Multiple sequence alignment - TraesCS4D01G349900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G349900 chr4D 100.000 2739 0 0 1 2739 502552351 502555089 0.000000e+00 5059.0
1 TraesCS4D01G349900 chr4B 92.698 1301 69 10 1453 2739 646873150 646874438 0.000000e+00 1853.0
2 TraesCS4D01G349900 chr4B 93.785 724 37 4 681 1397 646872429 646873151 0.000000e+00 1081.0
3 TraesCS4D01G349900 chr4B 86.905 252 29 4 1 250 364611535 364611286 2.080000e-71 279.0
4 TraesCS4D01G349900 chr5A 92.401 1237 72 11 1517 2739 685875875 685877103 0.000000e+00 1744.0
5 TraesCS4D01G349900 chr5A 93.366 618 37 2 761 1374 685875254 685875871 0.000000e+00 911.0
6 TraesCS4D01G349900 chr5A 92.576 229 14 2 539 765 685874871 685875098 2.630000e-85 326.0
7 TraesCS4D01G349900 chr5A 85.141 249 32 5 1 248 307713882 307714126 1.630000e-62 250.0
8 TraesCS4D01G349900 chr6D 85.130 269 35 4 1 269 429876204 429875941 1.250000e-68 270.0
9 TraesCS4D01G349900 chr2D 85.659 258 32 3 1 258 8468591 8468339 1.620000e-67 267.0
10 TraesCS4D01G349900 chr2D 86.905 84 10 1 311 393 34095601 34095518 2.900000e-15 93.5
11 TraesCS4D01G349900 chr6B 84.791 263 36 3 1 262 22816050 22815791 7.520000e-66 261.0
12 TraesCS4D01G349900 chr4A 85.433 254 29 6 2 252 198190438 198190190 9.730000e-65 257.0
13 TraesCS4D01G349900 chr4A 84.677 248 34 4 1 248 620392587 620392344 7.580000e-61 244.0
14 TraesCS4D01G349900 chr2A 86.008 243 31 3 6 248 440097470 440097231 9.730000e-65 257.0
15 TraesCS4D01G349900 chr2A 88.112 143 11 5 1372 1508 631963071 631963213 6.070000e-37 165.0
16 TraesCS4D01G349900 chr1A 85.081 248 35 2 1 248 1744062 1744307 4.530000e-63 252.0
17 TraesCS4D01G349900 chr1D 96.875 128 4 0 1381 1508 445550637 445550764 5.940000e-52 215.0
18 TraesCS4D01G349900 chr2B 94.488 127 7 0 1382 1508 789455579 789455453 2.150000e-46 196.0
19 TraesCS4D01G349900 chr2B 85.600 125 12 3 1386 1508 58602291 58602171 2.860000e-25 126.0
20 TraesCS4D01G349900 chr5D 91.473 129 9 1 1382 1508 76041249 76041377 2.800000e-40 176.0
21 TraesCS4D01G349900 chr5D 87.879 132 9 2 1379 1508 506257830 506257704 6.110000e-32 148.0
22 TraesCS4D01G349900 chr7A 82.677 127 18 3 1383 1508 138346025 138345902 2.880000e-20 110.0
23 TraesCS4D01G349900 chr7D 83.529 85 10 3 313 397 207965272 207965352 2.920000e-10 76.8
24 TraesCS4D01G349900 chr7B 83.529 85 9 5 313 397 193386449 193386370 1.050000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G349900 chr4D 502552351 502555089 2738 False 5059.000000 5059 100.0000 1 2739 1 chr4D.!!$F1 2738
1 TraesCS4D01G349900 chr4B 646872429 646874438 2009 False 1467.000000 1853 93.2415 681 2739 2 chr4B.!!$F1 2058
2 TraesCS4D01G349900 chr5A 685874871 685877103 2232 False 993.666667 1744 92.7810 539 2739 3 chr5A.!!$F2 2200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.032403 CGTACCGACACTGACCCAAA 59.968 55.0 0.00 0.0 0.00 3.28 F
362 363 0.035739 ATTTGGGTCGTGCGGTACTT 59.964 50.0 0.00 0.0 0.00 2.24 F
390 391 0.037139 TGTTACAACGCACGGGCTAT 60.037 50.0 8.62 0.0 38.10 2.97 F
519 520 0.039074 CGTCACCCTATCGAGGCATC 60.039 60.0 0.00 0.0 42.21 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1606 0.105964 TGGTGGCCGCATATGTACTC 59.894 55.000 19.98 0.0 0.0 2.59 R
1444 1617 0.177836 TATGTCTCATGTGGTGGCCG 59.822 55.000 0.00 0.0 0.0 6.13 R
1445 1618 1.065491 TGTATGTCTCATGTGGTGGCC 60.065 52.381 0.00 0.0 0.0 5.36 R
2114 2302 1.271934 CCACCAAAATCGTTGCATCCA 59.728 47.619 0.00 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 7.848223 AATTTGAAAATGCTATTTAGGGTGC 57.152 32.000 0.00 0.00 0.00 5.01
67 68 5.991933 TTGAAAATGCTATTTAGGGTGCA 57.008 34.783 0.00 0.00 39.83 4.57
68 69 5.991933 TGAAAATGCTATTTAGGGTGCAA 57.008 34.783 0.00 0.00 38.96 4.08
69 70 5.719173 TGAAAATGCTATTTAGGGTGCAAC 58.281 37.500 0.00 0.00 38.96 4.17
84 85 3.363178 GTGCAACCTTAATCAATAGCGC 58.637 45.455 0.00 0.00 0.00 5.92
85 86 3.013219 TGCAACCTTAATCAATAGCGCA 58.987 40.909 11.47 0.00 0.00 6.09
86 87 3.631686 TGCAACCTTAATCAATAGCGCAT 59.368 39.130 11.47 0.00 0.00 4.73
87 88 3.976942 GCAACCTTAATCAATAGCGCATG 59.023 43.478 11.47 5.77 0.00 4.06
88 89 4.261155 GCAACCTTAATCAATAGCGCATGA 60.261 41.667 11.47 11.82 0.00 3.07
89 90 5.563475 GCAACCTTAATCAATAGCGCATGAT 60.563 40.000 11.47 13.75 37.88 2.45
90 91 6.441274 CAACCTTAATCAATAGCGCATGATT 58.559 36.000 27.53 27.53 45.54 2.57
91 92 6.246420 ACCTTAATCAATAGCGCATGATTC 57.754 37.500 27.97 0.00 43.33 2.52
92 93 5.764686 ACCTTAATCAATAGCGCATGATTCA 59.235 36.000 27.97 20.50 43.33 2.57
93 94 6.432162 ACCTTAATCAATAGCGCATGATTCAT 59.568 34.615 27.97 14.99 43.33 2.57
94 95 6.965500 CCTTAATCAATAGCGCATGATTCATC 59.035 38.462 27.97 0.00 43.33 2.92
95 96 7.148289 CCTTAATCAATAGCGCATGATTCATCT 60.148 37.037 27.97 14.45 43.33 2.90
96 97 6.570672 AATCAATAGCGCATGATTCATCTT 57.429 33.333 22.49 7.82 41.22 2.40
97 98 5.602458 TCAATAGCGCATGATTCATCTTC 57.398 39.130 11.47 0.00 0.00 2.87
98 99 4.453478 TCAATAGCGCATGATTCATCTTCC 59.547 41.667 11.47 0.00 0.00 3.46
99 100 2.634815 AGCGCATGATTCATCTTCCT 57.365 45.000 11.47 0.00 0.00 3.36
100 101 2.928334 AGCGCATGATTCATCTTCCTT 58.072 42.857 11.47 0.00 0.00 3.36
101 102 3.285484 AGCGCATGATTCATCTTCCTTT 58.715 40.909 11.47 0.00 0.00 3.11
102 103 3.314635 AGCGCATGATTCATCTTCCTTTC 59.685 43.478 11.47 0.00 0.00 2.62
103 104 3.847467 GCGCATGATTCATCTTCCTTTCG 60.847 47.826 0.30 0.00 0.00 3.46
104 105 3.310774 CGCATGATTCATCTTCCTTTCGT 59.689 43.478 0.00 0.00 0.00 3.85
105 106 4.507756 CGCATGATTCATCTTCCTTTCGTA 59.492 41.667 0.00 0.00 0.00 3.43
106 107 5.557136 CGCATGATTCATCTTCCTTTCGTAC 60.557 44.000 0.00 0.00 0.00 3.67
107 108 5.277538 GCATGATTCATCTTCCTTTCGTACC 60.278 44.000 0.00 0.00 0.00 3.34
108 109 4.430007 TGATTCATCTTCCTTTCGTACCG 58.570 43.478 0.00 0.00 0.00 4.02
109 110 4.158949 TGATTCATCTTCCTTTCGTACCGA 59.841 41.667 0.00 0.00 0.00 4.69
110 111 3.498927 TCATCTTCCTTTCGTACCGAC 57.501 47.619 0.00 0.00 34.89 4.79
111 112 2.821378 TCATCTTCCTTTCGTACCGACA 59.179 45.455 0.00 0.00 34.89 4.35
112 113 2.712057 TCTTCCTTTCGTACCGACAC 57.288 50.000 0.00 0.00 34.89 3.67
113 114 2.233271 TCTTCCTTTCGTACCGACACT 58.767 47.619 0.00 0.00 34.89 3.55
114 115 2.030540 TCTTCCTTTCGTACCGACACTG 60.031 50.000 0.00 0.00 34.89 3.66
115 116 1.608055 TCCTTTCGTACCGACACTGA 58.392 50.000 0.00 0.00 34.89 3.41
116 117 1.267806 TCCTTTCGTACCGACACTGAC 59.732 52.381 0.00 0.00 34.89 3.51
117 118 1.668047 CCTTTCGTACCGACACTGACC 60.668 57.143 0.00 0.00 34.89 4.02
118 119 0.314935 TTTCGTACCGACACTGACCC 59.685 55.000 0.00 0.00 34.89 4.46
119 120 0.822944 TTCGTACCGACACTGACCCA 60.823 55.000 0.00 0.00 34.89 4.51
120 121 0.822944 TCGTACCGACACTGACCCAA 60.823 55.000 0.00 0.00 0.00 4.12
121 122 0.032403 CGTACCGACACTGACCCAAA 59.968 55.000 0.00 0.00 0.00 3.28
122 123 1.337447 CGTACCGACACTGACCCAAAT 60.337 52.381 0.00 0.00 0.00 2.32
123 124 2.774687 GTACCGACACTGACCCAAATT 58.225 47.619 0.00 0.00 0.00 1.82
124 125 1.604604 ACCGACACTGACCCAAATTG 58.395 50.000 0.00 0.00 0.00 2.32
125 126 0.240945 CCGACACTGACCCAAATTGC 59.759 55.000 0.00 0.00 0.00 3.56
126 127 0.950836 CGACACTGACCCAAATTGCA 59.049 50.000 0.00 0.00 0.00 4.08
127 128 1.336440 CGACACTGACCCAAATTGCAA 59.664 47.619 0.00 0.00 0.00 4.08
128 129 2.223688 CGACACTGACCCAAATTGCAAA 60.224 45.455 1.71 0.00 0.00 3.68
129 130 3.552684 CGACACTGACCCAAATTGCAAAT 60.553 43.478 1.71 0.00 0.00 2.32
130 131 3.731089 ACACTGACCCAAATTGCAAATG 58.269 40.909 1.71 5.89 0.00 2.32
131 132 3.387374 ACACTGACCCAAATTGCAAATGA 59.613 39.130 15.08 0.00 0.00 2.57
132 133 4.141756 ACACTGACCCAAATTGCAAATGAA 60.142 37.500 15.08 0.00 0.00 2.57
133 134 4.211794 CACTGACCCAAATTGCAAATGAAC 59.788 41.667 15.08 7.86 0.00 3.18
134 135 4.141756 ACTGACCCAAATTGCAAATGAACA 60.142 37.500 15.08 10.93 0.00 3.18
135 136 4.125703 TGACCCAAATTGCAAATGAACAC 58.874 39.130 15.08 2.31 0.00 3.32
136 137 3.475575 ACCCAAATTGCAAATGAACACC 58.524 40.909 15.08 0.00 0.00 4.16
137 138 3.136260 ACCCAAATTGCAAATGAACACCT 59.864 39.130 15.08 0.00 0.00 4.00
138 139 3.747529 CCCAAATTGCAAATGAACACCTC 59.252 43.478 15.08 0.00 0.00 3.85
139 140 4.378774 CCAAATTGCAAATGAACACCTCA 58.621 39.130 15.08 0.00 38.81 3.86
141 142 5.121142 CCAAATTGCAAATGAACACCTCATC 59.879 40.000 15.08 0.00 44.43 2.92
142 143 5.471556 AATTGCAAATGAACACCTCATCA 57.528 34.783 1.71 0.00 44.43 3.07
143 144 4.933505 TTGCAAATGAACACCTCATCAA 57.066 36.364 0.00 0.00 44.43 2.57
144 145 4.933505 TGCAAATGAACACCTCATCAAA 57.066 36.364 0.00 0.00 44.43 2.69
145 146 4.873817 TGCAAATGAACACCTCATCAAAG 58.126 39.130 0.00 0.00 44.43 2.77
146 147 3.676646 GCAAATGAACACCTCATCAAAGC 59.323 43.478 0.00 0.00 44.43 3.51
147 148 4.240096 CAAATGAACACCTCATCAAAGCC 58.760 43.478 0.00 0.00 44.43 4.35
148 149 2.655090 TGAACACCTCATCAAAGCCA 57.345 45.000 0.00 0.00 0.00 4.75
149 150 2.942804 TGAACACCTCATCAAAGCCAA 58.057 42.857 0.00 0.00 0.00 4.52
150 151 3.295093 TGAACACCTCATCAAAGCCAAA 58.705 40.909 0.00 0.00 0.00 3.28
151 152 3.896888 TGAACACCTCATCAAAGCCAAAT 59.103 39.130 0.00 0.00 0.00 2.32
152 153 4.344679 TGAACACCTCATCAAAGCCAAATT 59.655 37.500 0.00 0.00 0.00 1.82
153 154 4.261578 ACACCTCATCAAAGCCAAATTG 57.738 40.909 0.00 0.00 0.00 2.32
154 155 3.007182 ACACCTCATCAAAGCCAAATTGG 59.993 43.478 7.84 7.84 41.55 3.16
155 156 3.258872 CACCTCATCAAAGCCAAATTGGA 59.741 43.478 17.47 0.00 40.96 3.53
156 157 3.512724 ACCTCATCAAAGCCAAATTGGAG 59.487 43.478 17.47 1.04 40.96 3.86
157 158 3.765511 CCTCATCAAAGCCAAATTGGAGA 59.234 43.478 17.47 7.70 40.96 3.71
158 159 4.381292 CCTCATCAAAGCCAAATTGGAGAC 60.381 45.833 17.47 0.00 40.96 3.36
159 160 3.191162 TCATCAAAGCCAAATTGGAGACG 59.809 43.478 17.47 0.87 40.96 4.18
160 161 2.857483 TCAAAGCCAAATTGGAGACGA 58.143 42.857 17.47 3.42 40.96 4.20
161 162 3.218453 TCAAAGCCAAATTGGAGACGAA 58.782 40.909 17.47 0.00 40.96 3.85
162 163 3.634448 TCAAAGCCAAATTGGAGACGAAA 59.366 39.130 17.47 0.00 40.96 3.46
163 164 3.643159 AAGCCAAATTGGAGACGAAAC 57.357 42.857 17.47 0.00 40.96 2.78
164 165 2.582052 AGCCAAATTGGAGACGAAACA 58.418 42.857 17.47 0.00 40.96 2.83
165 166 2.955660 AGCCAAATTGGAGACGAAACAA 59.044 40.909 17.47 0.00 40.96 2.83
166 167 3.383185 AGCCAAATTGGAGACGAAACAAA 59.617 39.130 17.47 0.00 40.96 2.83
167 168 3.489416 GCCAAATTGGAGACGAAACAAAC 59.511 43.478 17.47 0.00 40.96 2.93
168 169 4.048504 CCAAATTGGAGACGAAACAAACC 58.951 43.478 6.04 0.00 40.96 3.27
169 170 4.440802 CCAAATTGGAGACGAAACAAACCA 60.441 41.667 6.04 0.00 40.96 3.67
170 171 5.288804 CAAATTGGAGACGAAACAAACCAT 58.711 37.500 0.00 0.00 0.00 3.55
171 172 4.766404 ATTGGAGACGAAACAAACCATC 57.234 40.909 0.00 0.00 0.00 3.51
172 173 2.139917 TGGAGACGAAACAAACCATCG 58.860 47.619 0.00 0.00 42.05 3.84
173 174 2.224090 TGGAGACGAAACAAACCATCGA 60.224 45.455 1.03 0.00 39.73 3.59
174 175 3.000727 GGAGACGAAACAAACCATCGAT 58.999 45.455 0.00 0.00 39.73 3.59
175 176 4.178540 GGAGACGAAACAAACCATCGATA 58.821 43.478 0.00 0.00 39.73 2.92
176 177 4.628333 GGAGACGAAACAAACCATCGATAA 59.372 41.667 0.00 0.00 39.73 1.75
177 178 5.445540 GGAGACGAAACAAACCATCGATAAC 60.446 44.000 0.00 0.00 39.73 1.89
178 179 4.390909 AGACGAAACAAACCATCGATAACC 59.609 41.667 0.00 0.00 39.73 2.85
179 180 3.123959 ACGAAACAAACCATCGATAACCG 59.876 43.478 0.00 0.00 39.73 4.44
180 181 3.123959 CGAAACAAACCATCGATAACCGT 59.876 43.478 0.00 0.00 38.82 4.83
181 182 4.399978 GAAACAAACCATCGATAACCGTG 58.600 43.478 0.00 0.00 39.75 4.94
182 183 1.735571 ACAAACCATCGATAACCGTGC 59.264 47.619 0.00 0.00 39.75 5.34
183 184 1.735018 CAAACCATCGATAACCGTGCA 59.265 47.619 0.00 0.00 39.75 4.57
184 185 2.325583 AACCATCGATAACCGTGCAT 57.674 45.000 0.00 0.00 39.75 3.96
185 186 1.581934 ACCATCGATAACCGTGCATG 58.418 50.000 0.00 0.00 39.75 4.06
186 187 0.235665 CCATCGATAACCGTGCATGC 59.764 55.000 11.82 11.82 39.75 4.06
187 188 0.936600 CATCGATAACCGTGCATGCA 59.063 50.000 18.46 18.46 39.75 3.96
188 189 0.937304 ATCGATAACCGTGCATGCAC 59.063 50.000 35.76 35.76 43.01 4.57
199 200 3.736100 CATGCACGCCTCGGCAAA 61.736 61.111 8.87 0.00 44.20 3.68
200 201 3.737172 ATGCACGCCTCGGCAAAC 61.737 61.111 8.87 0.00 44.20 2.93
212 213 2.949826 GGCAAACCGTTACATGGGA 58.050 52.632 0.00 0.00 0.00 4.37
213 214 1.249407 GGCAAACCGTTACATGGGAA 58.751 50.000 0.00 0.00 0.00 3.97
214 215 1.614413 GGCAAACCGTTACATGGGAAA 59.386 47.619 0.00 0.00 0.00 3.13
215 216 2.352323 GGCAAACCGTTACATGGGAAAG 60.352 50.000 0.00 0.00 0.00 2.62
216 217 2.554893 GCAAACCGTTACATGGGAAAGA 59.445 45.455 0.00 0.00 0.00 2.52
217 218 3.004944 GCAAACCGTTACATGGGAAAGAA 59.995 43.478 0.00 0.00 0.00 2.52
218 219 4.500035 GCAAACCGTTACATGGGAAAGAAA 60.500 41.667 0.00 0.00 0.00 2.52
219 220 5.593010 CAAACCGTTACATGGGAAAGAAAA 58.407 37.500 0.00 0.00 0.00 2.29
220 221 4.841443 ACCGTTACATGGGAAAGAAAAC 57.159 40.909 0.00 0.00 0.00 2.43
221 222 4.208746 ACCGTTACATGGGAAAGAAAACA 58.791 39.130 0.00 0.00 0.00 2.83
222 223 4.277423 ACCGTTACATGGGAAAGAAAACAG 59.723 41.667 0.00 0.00 0.00 3.16
223 224 4.517453 CCGTTACATGGGAAAGAAAACAGA 59.483 41.667 0.00 0.00 0.00 3.41
224 225 5.183140 CCGTTACATGGGAAAGAAAACAGAT 59.817 40.000 0.00 0.00 0.00 2.90
225 226 6.294508 CCGTTACATGGGAAAGAAAACAGATT 60.295 38.462 0.00 0.00 0.00 2.40
226 227 7.145323 CGTTACATGGGAAAGAAAACAGATTT 58.855 34.615 0.00 0.00 0.00 2.17
227 228 7.326063 CGTTACATGGGAAAGAAAACAGATTTC 59.674 37.037 0.00 0.00 46.45 2.17
239 240 6.705863 AAAACAGATTTCTCATCCTATGCC 57.294 37.500 0.00 0.00 0.00 4.40
240 241 4.000331 ACAGATTTCTCATCCTATGCCG 58.000 45.455 0.00 0.00 0.00 5.69
241 242 3.643320 ACAGATTTCTCATCCTATGCCGA 59.357 43.478 0.00 0.00 0.00 5.54
242 243 4.244066 CAGATTTCTCATCCTATGCCGAG 58.756 47.826 0.00 0.00 0.00 4.63
243 244 4.021632 CAGATTTCTCATCCTATGCCGAGA 60.022 45.833 0.00 0.00 32.79 4.04
244 245 4.220382 AGATTTCTCATCCTATGCCGAGAG 59.780 45.833 0.00 0.00 35.99 3.20
245 246 2.959465 TCTCATCCTATGCCGAGAGA 57.041 50.000 0.00 0.00 31.11 3.10
246 247 2.789213 TCTCATCCTATGCCGAGAGAG 58.211 52.381 0.00 0.00 31.11 3.20
247 248 2.373502 TCTCATCCTATGCCGAGAGAGA 59.626 50.000 0.00 0.00 31.11 3.10
248 249 2.749076 CTCATCCTATGCCGAGAGAGAG 59.251 54.545 0.00 0.00 0.00 3.20
249 250 2.373502 TCATCCTATGCCGAGAGAGAGA 59.626 50.000 0.00 0.00 0.00 3.10
250 251 2.559698 TCCTATGCCGAGAGAGAGAG 57.440 55.000 0.00 0.00 0.00 3.20
251 252 2.050918 TCCTATGCCGAGAGAGAGAGA 58.949 52.381 0.00 0.00 0.00 3.10
252 253 2.038426 TCCTATGCCGAGAGAGAGAGAG 59.962 54.545 0.00 0.00 0.00 3.20
253 254 2.038426 CCTATGCCGAGAGAGAGAGAGA 59.962 54.545 0.00 0.00 0.00 3.10
254 255 2.957402 ATGCCGAGAGAGAGAGAGAT 57.043 50.000 0.00 0.00 0.00 2.75
255 256 4.081142 CCTATGCCGAGAGAGAGAGAGATA 60.081 50.000 0.00 0.00 0.00 1.98
256 257 3.401033 TGCCGAGAGAGAGAGAGATAG 57.599 52.381 0.00 0.00 0.00 2.08
257 258 2.969262 TGCCGAGAGAGAGAGAGATAGA 59.031 50.000 0.00 0.00 0.00 1.98
258 259 3.582647 TGCCGAGAGAGAGAGAGATAGAT 59.417 47.826 0.00 0.00 0.00 1.98
259 260 4.775253 TGCCGAGAGAGAGAGAGATAGATA 59.225 45.833 0.00 0.00 0.00 1.98
260 261 5.105351 TGCCGAGAGAGAGAGAGATAGATAG 60.105 48.000 0.00 0.00 0.00 2.08
261 262 5.127194 GCCGAGAGAGAGAGAGATAGATAGA 59.873 48.000 0.00 0.00 0.00 1.98
262 263 6.183360 GCCGAGAGAGAGAGAGATAGATAGAT 60.183 46.154 0.00 0.00 0.00 1.98
263 264 7.014326 GCCGAGAGAGAGAGAGATAGATAGATA 59.986 44.444 0.00 0.00 0.00 1.98
264 265 8.572185 CCGAGAGAGAGAGAGATAGATAGATAG 58.428 44.444 0.00 0.00 0.00 2.08
265 266 9.343539 CGAGAGAGAGAGAGATAGATAGATAGA 57.656 40.741 0.00 0.00 0.00 1.98
280 281 8.821686 AGATAGATAGAGAGAGAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
281 282 8.619281 AGATAGATAGAGAGAGAGAGAGAGAGA 58.381 40.741 0.00 0.00 0.00 3.10
282 283 8.821686 ATAGATAGAGAGAGAGAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
283 284 6.857848 AGATAGAGAGAGAGAGAGAGAGAGA 58.142 44.000 0.00 0.00 0.00 3.10
284 285 6.947733 AGATAGAGAGAGAGAGAGAGAGAGAG 59.052 46.154 0.00 0.00 0.00 3.20
285 286 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
286 287 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
287 288 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
288 289 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
289 290 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
290 291 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
291 292 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
292 293 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
293 294 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
294 295 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
295 296 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
296 297 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
297 298 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
298 299 4.648762 AGAGAGAGAGAGAGAGAGAGAGTG 59.351 50.000 0.00 0.00 0.00 3.51
299 300 4.614475 AGAGAGAGAGAGAGAGAGAGTGA 58.386 47.826 0.00 0.00 0.00 3.41
300 301 5.026121 AGAGAGAGAGAGAGAGAGAGTGAA 58.974 45.833 0.00 0.00 0.00 3.18
301 302 5.128499 AGAGAGAGAGAGAGAGAGAGTGAAG 59.872 48.000 0.00 0.00 0.00 3.02
302 303 3.873952 GAGAGAGAGAGAGAGAGTGAAGC 59.126 52.174 0.00 0.00 0.00 3.86
303 304 2.945668 GAGAGAGAGAGAGAGTGAAGCC 59.054 54.545 0.00 0.00 0.00 4.35
304 305 2.578021 AGAGAGAGAGAGAGTGAAGCCT 59.422 50.000 0.00 0.00 0.00 4.58
305 306 2.945668 GAGAGAGAGAGAGTGAAGCCTC 59.054 54.545 0.00 0.00 0.00 4.70
306 307 1.670811 GAGAGAGAGAGTGAAGCCTCG 59.329 57.143 0.00 0.00 36.56 4.63
307 308 0.738389 GAGAGAGAGTGAAGCCTCGG 59.262 60.000 0.00 0.00 36.56 4.63
308 309 1.140804 GAGAGAGTGAAGCCTCGGC 59.859 63.158 0.00 0.00 42.33 5.54
309 310 1.599606 GAGAGAGTGAAGCCTCGGCA 61.600 60.000 11.02 0.00 44.88 5.69
310 311 1.188219 AGAGAGTGAAGCCTCGGCAA 61.188 55.000 11.02 0.00 44.88 4.52
311 312 0.739112 GAGAGTGAAGCCTCGGCAAG 60.739 60.000 11.02 0.00 44.88 4.01
312 313 1.188219 AGAGTGAAGCCTCGGCAAGA 61.188 55.000 11.02 0.00 44.88 3.02
313 314 1.004440 AGTGAAGCCTCGGCAAGAC 60.004 57.895 11.02 3.18 44.88 3.01
314 315 2.035442 GTGAAGCCTCGGCAAGACC 61.035 63.158 11.02 0.00 44.88 3.85
315 316 2.217038 TGAAGCCTCGGCAAGACCT 61.217 57.895 11.02 0.00 44.88 3.85
316 317 0.902984 TGAAGCCTCGGCAAGACCTA 60.903 55.000 11.02 0.00 44.88 3.08
317 318 0.460459 GAAGCCTCGGCAAGACCTAC 60.460 60.000 11.02 0.00 44.88 3.18
318 319 0.905337 AAGCCTCGGCAAGACCTACT 60.905 55.000 11.02 0.00 44.88 2.57
319 320 1.153549 GCCTCGGCAAGACCTACTG 60.154 63.158 2.41 0.00 41.49 2.74
320 321 1.517832 CCTCGGCAAGACCTACTGG 59.482 63.158 0.00 0.00 35.61 4.00
321 322 1.517832 CTCGGCAAGACCTACTGGG 59.482 63.158 0.00 0.00 41.89 4.45
322 323 1.961180 CTCGGCAAGACCTACTGGGG 61.961 65.000 0.00 0.00 40.03 4.96
323 324 2.291043 CGGCAAGACCTACTGGGGT 61.291 63.158 0.00 0.00 43.07 4.95
331 332 1.939980 ACCTACTGGGGTCTTGAGTC 58.060 55.000 0.00 0.00 40.03 3.36
332 333 1.149288 ACCTACTGGGGTCTTGAGTCA 59.851 52.381 0.00 0.00 40.03 3.41
333 334 2.225650 ACCTACTGGGGTCTTGAGTCAT 60.226 50.000 0.00 0.00 40.03 3.06
334 335 2.169352 CCTACTGGGGTCTTGAGTCATG 59.831 54.545 0.00 0.00 0.00 3.07
335 336 0.987294 ACTGGGGTCTTGAGTCATGG 59.013 55.000 6.21 0.00 0.00 3.66
336 337 0.987294 CTGGGGTCTTGAGTCATGGT 59.013 55.000 6.21 0.00 0.00 3.55
337 338 1.352352 CTGGGGTCTTGAGTCATGGTT 59.648 52.381 6.21 0.00 0.00 3.67
338 339 2.571653 CTGGGGTCTTGAGTCATGGTTA 59.428 50.000 6.21 0.00 0.00 2.85
339 340 3.189606 TGGGGTCTTGAGTCATGGTTAT 58.810 45.455 6.21 0.00 0.00 1.89
340 341 3.591527 TGGGGTCTTGAGTCATGGTTATT 59.408 43.478 6.21 0.00 0.00 1.40
341 342 3.947834 GGGGTCTTGAGTCATGGTTATTG 59.052 47.826 6.21 0.00 0.00 1.90
342 343 3.947834 GGGTCTTGAGTCATGGTTATTGG 59.052 47.826 6.21 0.00 0.00 3.16
343 344 4.324254 GGGTCTTGAGTCATGGTTATTGGA 60.324 45.833 6.21 0.00 0.00 3.53
344 345 5.440610 GGTCTTGAGTCATGGTTATTGGAT 58.559 41.667 6.21 0.00 0.00 3.41
345 346 5.888161 GGTCTTGAGTCATGGTTATTGGATT 59.112 40.000 6.21 0.00 0.00 3.01
346 347 6.378280 GGTCTTGAGTCATGGTTATTGGATTT 59.622 38.462 6.21 0.00 0.00 2.17
347 348 7.253422 GTCTTGAGTCATGGTTATTGGATTTG 58.747 38.462 6.21 0.00 0.00 2.32
348 349 6.377996 TCTTGAGTCATGGTTATTGGATTTGG 59.622 38.462 6.21 0.00 0.00 3.28
349 350 4.955450 TGAGTCATGGTTATTGGATTTGGG 59.045 41.667 0.00 0.00 0.00 4.12
350 351 4.946646 AGTCATGGTTATTGGATTTGGGT 58.053 39.130 0.00 0.00 0.00 4.51
351 352 4.956075 AGTCATGGTTATTGGATTTGGGTC 59.044 41.667 0.00 0.00 0.00 4.46
352 353 3.951037 TCATGGTTATTGGATTTGGGTCG 59.049 43.478 0.00 0.00 0.00 4.79
353 354 3.443145 TGGTTATTGGATTTGGGTCGT 57.557 42.857 0.00 0.00 0.00 4.34
354 355 3.085533 TGGTTATTGGATTTGGGTCGTG 58.914 45.455 0.00 0.00 0.00 4.35
355 356 2.159296 GGTTATTGGATTTGGGTCGTGC 60.159 50.000 0.00 0.00 0.00 5.34
356 357 1.374560 TATTGGATTTGGGTCGTGCG 58.625 50.000 0.00 0.00 0.00 5.34
357 358 1.312371 ATTGGATTTGGGTCGTGCGG 61.312 55.000 0.00 0.00 0.00 5.69
358 359 2.359478 GGATTTGGGTCGTGCGGT 60.359 61.111 0.00 0.00 0.00 5.68
359 360 1.078988 GGATTTGGGTCGTGCGGTA 60.079 57.895 0.00 0.00 0.00 4.02
360 361 1.363885 GGATTTGGGTCGTGCGGTAC 61.364 60.000 0.00 0.00 0.00 3.34
361 362 0.390735 GATTTGGGTCGTGCGGTACT 60.391 55.000 0.00 0.00 0.00 2.73
362 363 0.035739 ATTTGGGTCGTGCGGTACTT 59.964 50.000 0.00 0.00 0.00 2.24
363 364 0.179051 TTTGGGTCGTGCGGTACTTT 60.179 50.000 0.00 0.00 0.00 2.66
364 365 0.600782 TTGGGTCGTGCGGTACTTTC 60.601 55.000 0.00 0.00 0.00 2.62
365 366 1.291272 GGGTCGTGCGGTACTTTCT 59.709 57.895 0.00 0.00 0.00 2.52
366 367 0.320160 GGGTCGTGCGGTACTTTCTT 60.320 55.000 0.00 0.00 0.00 2.52
367 368 1.066136 GGTCGTGCGGTACTTTCTTC 58.934 55.000 0.00 0.00 0.00 2.87
368 369 1.336609 GGTCGTGCGGTACTTTCTTCT 60.337 52.381 0.00 0.00 0.00 2.85
369 370 1.984297 GTCGTGCGGTACTTTCTTCTC 59.016 52.381 0.00 0.00 0.00 2.87
370 371 1.068055 TCGTGCGGTACTTTCTTCTCC 60.068 52.381 0.00 0.00 0.00 3.71
371 372 1.067776 CGTGCGGTACTTTCTTCTCCT 60.068 52.381 0.00 0.00 0.00 3.69
372 373 2.338500 GTGCGGTACTTTCTTCTCCTG 58.662 52.381 0.00 0.00 0.00 3.86
373 374 1.968493 TGCGGTACTTTCTTCTCCTGT 59.032 47.619 0.00 0.00 0.00 4.00
374 375 2.367567 TGCGGTACTTTCTTCTCCTGTT 59.632 45.455 0.00 0.00 0.00 3.16
375 376 3.575256 TGCGGTACTTTCTTCTCCTGTTA 59.425 43.478 0.00 0.00 0.00 2.41
376 377 3.925299 GCGGTACTTTCTTCTCCTGTTAC 59.075 47.826 0.00 0.00 0.00 2.50
377 378 4.560108 GCGGTACTTTCTTCTCCTGTTACA 60.560 45.833 0.00 0.00 0.00 2.41
378 379 5.535333 CGGTACTTTCTTCTCCTGTTACAA 58.465 41.667 0.00 0.00 0.00 2.41
379 380 5.404667 CGGTACTTTCTTCTCCTGTTACAAC 59.595 44.000 0.00 0.00 0.00 3.32
380 381 5.404667 GGTACTTTCTTCTCCTGTTACAACG 59.595 44.000 0.00 0.00 0.00 4.10
381 382 3.808174 ACTTTCTTCTCCTGTTACAACGC 59.192 43.478 0.00 0.00 0.00 4.84
382 383 3.462483 TTCTTCTCCTGTTACAACGCA 57.538 42.857 0.00 0.00 0.00 5.24
383 384 2.750948 TCTTCTCCTGTTACAACGCAC 58.249 47.619 0.00 0.00 0.00 5.34
384 385 1.455786 CTTCTCCTGTTACAACGCACG 59.544 52.381 0.00 0.00 0.00 5.34
385 386 0.319211 TCTCCTGTTACAACGCACGG 60.319 55.000 0.00 0.00 0.00 4.94
386 387 1.289109 CTCCTGTTACAACGCACGGG 61.289 60.000 0.00 0.00 40.43 5.28
387 388 2.554272 CTGTTACAACGCACGGGC 59.446 61.111 0.00 0.00 0.00 6.13
388 389 1.959226 CTGTTACAACGCACGGGCT 60.959 57.895 8.62 0.00 38.10 5.19
389 390 0.668096 CTGTTACAACGCACGGGCTA 60.668 55.000 8.62 0.00 38.10 3.93
390 391 0.037139 TGTTACAACGCACGGGCTAT 60.037 50.000 8.62 0.00 38.10 2.97
391 392 1.081094 GTTACAACGCACGGGCTATT 58.919 50.000 8.62 0.00 38.10 1.73
392 393 1.465777 GTTACAACGCACGGGCTATTT 59.534 47.619 8.62 0.00 38.10 1.40
393 394 1.810959 TACAACGCACGGGCTATTTT 58.189 45.000 8.62 0.00 38.10 1.82
394 395 0.239879 ACAACGCACGGGCTATTTTG 59.760 50.000 8.62 8.33 38.10 2.44
395 396 1.070471 CAACGCACGGGCTATTTTGC 61.070 55.000 8.62 0.00 38.10 3.68
396 397 1.241315 AACGCACGGGCTATTTTGCT 61.241 50.000 8.62 0.00 38.10 3.91
397 398 1.226379 CGCACGGGCTATTTTGCTG 60.226 57.895 8.62 0.00 38.10 4.41
398 399 1.883021 GCACGGGCTATTTTGCTGT 59.117 52.632 0.00 0.00 36.96 4.40
399 400 0.243636 GCACGGGCTATTTTGCTGTT 59.756 50.000 0.00 0.00 36.96 3.16
400 401 1.336795 GCACGGGCTATTTTGCTGTTT 60.337 47.619 0.00 0.00 36.96 2.83
401 402 2.866065 GCACGGGCTATTTTGCTGTTTT 60.866 45.455 0.00 0.00 36.96 2.43
402 403 3.389221 CACGGGCTATTTTGCTGTTTTT 58.611 40.909 0.00 0.00 0.00 1.94
436 437 7.821595 AACAACAAAGTTAACTAAACAAGCC 57.178 32.000 8.92 0.00 40.83 4.35
437 438 6.031471 ACAACAAAGTTAACTAAACAAGCCG 58.969 36.000 8.92 0.00 40.83 5.52
438 439 5.177725 ACAAAGTTAACTAAACAAGCCGG 57.822 39.130 8.92 0.00 40.83 6.13
439 440 3.909776 AAGTTAACTAAACAAGCCGGC 57.090 42.857 21.89 21.89 40.83 6.13
440 441 2.853705 AGTTAACTAAACAAGCCGGCA 58.146 42.857 31.54 5.25 40.83 5.69
441 442 2.551032 AGTTAACTAAACAAGCCGGCAC 59.449 45.455 31.54 13.32 40.83 5.01
442 443 2.257691 TAACTAAACAAGCCGGCACA 57.742 45.000 31.54 5.31 0.00 4.57
443 444 1.394618 AACTAAACAAGCCGGCACAA 58.605 45.000 31.54 6.48 0.00 3.33
444 445 0.666374 ACTAAACAAGCCGGCACAAC 59.334 50.000 31.54 0.00 0.00 3.32
445 446 0.951558 CTAAACAAGCCGGCACAACT 59.048 50.000 31.54 12.51 0.00 3.16
446 447 0.948678 TAAACAAGCCGGCACAACTC 59.051 50.000 31.54 0.00 0.00 3.01
447 448 0.751643 AAACAAGCCGGCACAACTCT 60.752 50.000 31.54 1.71 0.00 3.24
448 449 0.107831 AACAAGCCGGCACAACTCTA 59.892 50.000 31.54 0.00 0.00 2.43
449 450 0.324943 ACAAGCCGGCACAACTCTAT 59.675 50.000 31.54 0.00 0.00 1.98
450 451 1.009829 CAAGCCGGCACAACTCTATC 58.990 55.000 31.54 0.00 0.00 2.08
451 452 0.460284 AAGCCGGCACAACTCTATCG 60.460 55.000 31.54 0.00 0.00 2.92
452 453 1.141019 GCCGGCACAACTCTATCGA 59.859 57.895 24.80 0.00 0.00 3.59
453 454 1.146358 GCCGGCACAACTCTATCGAC 61.146 60.000 24.80 0.00 0.00 4.20
454 455 0.866061 CCGGCACAACTCTATCGACG 60.866 60.000 0.00 0.00 0.00 5.12
455 456 1.472276 CGGCACAACTCTATCGACGC 61.472 60.000 0.00 0.00 0.00 5.19
456 457 0.457853 GGCACAACTCTATCGACGCA 60.458 55.000 0.00 0.00 0.00 5.24
457 458 1.346365 GCACAACTCTATCGACGCAA 58.654 50.000 0.00 0.00 0.00 4.85
458 459 1.059264 GCACAACTCTATCGACGCAAC 59.941 52.381 0.00 0.00 0.00 4.17
459 460 1.654105 CACAACTCTATCGACGCAACC 59.346 52.381 0.00 0.00 0.00 3.77
460 461 1.271379 ACAACTCTATCGACGCAACCA 59.729 47.619 0.00 0.00 0.00 3.67
461 462 2.288579 ACAACTCTATCGACGCAACCAA 60.289 45.455 0.00 0.00 0.00 3.67
462 463 1.992170 ACTCTATCGACGCAACCAAC 58.008 50.000 0.00 0.00 0.00 3.77
463 464 1.271379 ACTCTATCGACGCAACCAACA 59.729 47.619 0.00 0.00 0.00 3.33
464 465 2.288579 ACTCTATCGACGCAACCAACAA 60.289 45.455 0.00 0.00 0.00 2.83
465 466 2.734606 CTCTATCGACGCAACCAACAAA 59.265 45.455 0.00 0.00 0.00 2.83
466 467 2.734606 TCTATCGACGCAACCAACAAAG 59.265 45.455 0.00 0.00 0.00 2.77
467 468 1.305201 ATCGACGCAACCAACAAAGT 58.695 45.000 0.00 0.00 0.00 2.66
468 469 1.088306 TCGACGCAACCAACAAAGTT 58.912 45.000 0.00 0.00 0.00 2.66
469 470 2.277969 TCGACGCAACCAACAAAGTTA 58.722 42.857 0.00 0.00 0.00 2.24
470 471 2.030701 TCGACGCAACCAACAAAGTTAC 59.969 45.455 0.00 0.00 0.00 2.50
471 472 2.031191 CGACGCAACCAACAAAGTTACT 59.969 45.455 0.00 0.00 0.00 2.24
472 473 3.245754 CGACGCAACCAACAAAGTTACTA 59.754 43.478 0.00 0.00 0.00 1.82
473 474 4.084223 CGACGCAACCAACAAAGTTACTAT 60.084 41.667 0.00 0.00 0.00 2.12
474 475 5.352643 ACGCAACCAACAAAGTTACTATC 57.647 39.130 0.00 0.00 0.00 2.08
475 476 5.061179 ACGCAACCAACAAAGTTACTATCT 58.939 37.500 0.00 0.00 0.00 1.98
476 477 6.225318 ACGCAACCAACAAAGTTACTATCTA 58.775 36.000 0.00 0.00 0.00 1.98
477 478 6.877322 ACGCAACCAACAAAGTTACTATCTAT 59.123 34.615 0.00 0.00 0.00 1.98
478 479 7.064253 ACGCAACCAACAAAGTTACTATCTATC 59.936 37.037 0.00 0.00 0.00 2.08
479 480 7.277981 CGCAACCAACAAAGTTACTATCTATCT 59.722 37.037 0.00 0.00 0.00 1.98
480 481 9.595823 GCAACCAACAAAGTTACTATCTATCTA 57.404 33.333 0.00 0.00 0.00 1.98
505 506 8.831000 ATAAAACAACAAAGTTAACTCGTCAC 57.169 30.769 8.95 0.00 0.00 3.67
506 507 4.870221 ACAACAAAGTTAACTCGTCACC 57.130 40.909 8.95 0.00 0.00 4.02
507 508 3.624410 ACAACAAAGTTAACTCGTCACCC 59.376 43.478 8.95 0.00 0.00 4.61
508 509 3.832615 ACAAAGTTAACTCGTCACCCT 57.167 42.857 8.95 0.00 0.00 4.34
509 510 4.942761 ACAAAGTTAACTCGTCACCCTA 57.057 40.909 8.95 0.00 0.00 3.53
510 511 5.479124 ACAAAGTTAACTCGTCACCCTAT 57.521 39.130 8.95 0.00 0.00 2.57
511 512 5.476614 ACAAAGTTAACTCGTCACCCTATC 58.523 41.667 8.95 0.00 0.00 2.08
512 513 4.367386 AAGTTAACTCGTCACCCTATCG 57.633 45.455 8.95 0.00 0.00 2.92
513 514 3.614092 AGTTAACTCGTCACCCTATCGA 58.386 45.455 1.12 0.00 0.00 3.59
516 517 1.655329 CTCGTCACCCTATCGAGGC 59.345 63.158 6.00 0.00 44.54 4.70
517 518 1.077285 TCGTCACCCTATCGAGGCA 60.077 57.895 0.00 0.00 42.21 4.75
518 519 0.467474 TCGTCACCCTATCGAGGCAT 60.467 55.000 0.00 0.00 42.21 4.40
519 520 0.039074 CGTCACCCTATCGAGGCATC 60.039 60.000 0.00 0.00 42.21 3.91
520 521 1.333177 GTCACCCTATCGAGGCATCT 58.667 55.000 0.00 0.00 42.21 2.90
521 522 2.515854 GTCACCCTATCGAGGCATCTA 58.484 52.381 0.00 0.00 42.21 1.98
522 523 3.093057 GTCACCCTATCGAGGCATCTAT 58.907 50.000 0.00 0.00 42.21 1.98
523 524 3.092301 TCACCCTATCGAGGCATCTATG 58.908 50.000 0.00 0.00 42.21 2.23
536 537 2.578786 CATCTATGCATGGCAAGGTGA 58.421 47.619 10.16 0.00 43.62 4.02
537 538 3.154710 CATCTATGCATGGCAAGGTGAT 58.845 45.455 10.16 0.00 43.62 3.06
551 552 0.389391 GGTGATCGTGTCATCCGGAT 59.611 55.000 12.38 12.38 39.48 4.18
659 660 2.408271 TCCAATCAGACTCACATGCC 57.592 50.000 0.00 0.00 0.00 4.40
670 671 1.224315 CACATGCCCCCATTCGAGA 59.776 57.895 0.00 0.00 0.00 4.04
671 672 0.179009 CACATGCCCCCATTCGAGAT 60.179 55.000 0.00 0.00 0.00 2.75
713 716 2.094078 CACCACATGCAAAACCCCATAG 60.094 50.000 0.00 0.00 0.00 2.23
765 773 0.613853 TCCGAGGAGACCGGTTTGAT 60.614 55.000 9.42 0.00 46.53 2.57
769 937 0.250513 AGGAGACCGGTTTGATGAGC 59.749 55.000 9.42 0.00 0.00 4.26
780 948 3.994392 GGTTTGATGAGCGTCTAACTTCA 59.006 43.478 13.74 0.00 35.26 3.02
816 984 3.296709 AACACCTAGGGACAGCGCG 62.297 63.158 14.81 0.00 0.00 6.86
1034 1204 3.489059 CGCAAGTTCTTCATGGTTGTTGT 60.489 43.478 0.00 0.00 0.00 3.32
1089 1259 7.606456 GGTGAGAATTTACACTGGATTTACTCA 59.394 37.037 13.02 0.00 37.22 3.41
1210 1381 3.881688 CCAGGCTAGAAAATCACATGAGG 59.118 47.826 0.00 0.00 0.00 3.86
1377 1550 6.653740 AGATACATCATCATGCGTGATTTGAT 59.346 34.615 25.07 20.94 42.37 2.57
1379 1552 5.898174 ACATCATCATGCGTGATTTGATTT 58.102 33.333 25.07 16.18 42.37 2.17
1430 1603 8.856153 TTCCATTAGTAGACAAACTTATTGCA 57.144 30.769 0.00 0.00 0.00 4.08
1431 1604 8.492673 TCCATTAGTAGACAAACTTATTGCAG 57.507 34.615 0.00 0.00 0.00 4.41
1432 1605 8.318412 TCCATTAGTAGACAAACTTATTGCAGA 58.682 33.333 0.00 0.00 0.00 4.26
1433 1606 8.607459 CCATTAGTAGACAAACTTATTGCAGAG 58.393 37.037 0.00 0.00 0.00 3.35
1434 1607 9.371136 CATTAGTAGACAAACTTATTGCAGAGA 57.629 33.333 1.44 0.00 0.00 3.10
1435 1608 8.988064 TTAGTAGACAAACTTATTGCAGAGAG 57.012 34.615 1.44 0.00 0.00 3.20
1436 1609 6.998802 AGTAGACAAACTTATTGCAGAGAGT 58.001 36.000 1.44 0.00 0.00 3.24
1437 1610 8.123639 AGTAGACAAACTTATTGCAGAGAGTA 57.876 34.615 1.44 0.00 0.00 2.59
1438 1611 8.030106 AGTAGACAAACTTATTGCAGAGAGTAC 58.970 37.037 1.44 0.00 0.00 2.73
1439 1612 6.759272 AGACAAACTTATTGCAGAGAGTACA 58.241 36.000 0.00 0.00 0.00 2.90
1440 1613 7.390027 AGACAAACTTATTGCAGAGAGTACAT 58.610 34.615 0.00 0.00 0.00 2.29
1441 1614 8.531982 AGACAAACTTATTGCAGAGAGTACATA 58.468 33.333 0.00 0.00 0.00 2.29
1442 1615 9.319143 GACAAACTTATTGCAGAGAGTACATAT 57.681 33.333 0.00 0.00 0.00 1.78
1443 1616 9.102757 ACAAACTTATTGCAGAGAGTACATATG 57.897 33.333 0.00 0.00 0.00 1.78
1444 1617 7.721286 AACTTATTGCAGAGAGTACATATGC 57.279 36.000 1.58 9.92 37.40 3.14
1445 1618 5.923114 ACTTATTGCAGAGAGTACATATGCG 59.077 40.000 1.58 2.20 39.74 4.73
1446 1619 2.800881 TGCAGAGAGTACATATGCGG 57.199 50.000 1.58 0.00 39.74 5.69
1447 1620 1.269778 TGCAGAGAGTACATATGCGGC 60.270 52.381 1.58 0.00 39.74 6.53
1448 1621 1.937108 GCAGAGAGTACATATGCGGCC 60.937 57.143 1.58 0.00 0.00 6.13
1449 1622 1.341209 CAGAGAGTACATATGCGGCCA 59.659 52.381 2.24 0.00 0.00 5.36
1450 1623 1.341531 AGAGAGTACATATGCGGCCAC 59.658 52.381 2.24 0.00 0.00 5.01
1451 1624 0.393077 AGAGTACATATGCGGCCACC 59.607 55.000 2.24 0.00 0.00 4.61
1465 1638 1.065491 GGCCACCACATGAGACATACA 60.065 52.381 0.00 0.00 0.00 2.29
1496 1669 8.296713 TGTCTTACATTTTTGCACTAAAGATCC 58.703 33.333 0.00 0.00 0.00 3.36
1504 1677 3.719871 TGCACTAAAGATCCTCCTACCA 58.280 45.455 0.00 0.00 0.00 3.25
1569 1742 2.365617 TGTGGGTGTGTTTGTGTTGTTT 59.634 40.909 0.00 0.00 0.00 2.83
1574 1747 4.396790 GGGTGTGTTTGTGTTGTTTAGAGA 59.603 41.667 0.00 0.00 0.00 3.10
1836 2019 9.801873 TCTAAAAGAAAAGAAAATGGAGTTGTG 57.198 29.630 0.00 0.00 0.00 3.33
1844 2027 7.765695 AAGAAAATGGAGTTGTGACACATAT 57.234 32.000 9.55 0.54 0.00 1.78
2000 2188 9.573133 GTCATTGTGTAAGATTATTTTCCAAGG 57.427 33.333 0.00 0.00 0.00 3.61
2114 2302 6.223852 ACGTTGACAGTGAAGACAAATAGAT 58.776 36.000 0.00 0.00 0.00 1.98
2142 2330 1.000731 ACGATTTTGGTGGTTGCATGG 59.999 47.619 0.00 0.00 0.00 3.66
2165 2353 5.394224 GGTCTGAACACGGAGATCTCAAATA 60.394 44.000 23.85 3.08 0.00 1.40
2219 2409 1.089920 CGGCTCCACCAAAGAATCAG 58.910 55.000 0.00 0.00 39.03 2.90
2224 2414 4.384647 GGCTCCACCAAAGAATCAGTATCT 60.385 45.833 0.00 0.00 38.86 1.98
2295 2485 7.750229 ATCGATATGCCAAAACTATCAACAT 57.250 32.000 0.00 0.00 0.00 2.71
2297 2487 6.765512 TCGATATGCCAAAACTATCAACATCA 59.234 34.615 0.00 0.00 0.00 3.07
2347 2537 9.810545 CAAAAAGGGAGTGAAGTTGTTTATTTA 57.189 29.630 0.00 0.00 0.00 1.40
2374 2564 5.810587 TCTTGTCTCTTGGTATTAATGACGC 59.189 40.000 0.00 0.00 0.00 5.19
2387 2577 0.385751 ATGACGCCAGTGATCGGTAG 59.614 55.000 9.05 0.00 0.00 3.18
2393 2583 2.738643 CGCCAGTGATCGGTAGTTTCAT 60.739 50.000 0.00 0.00 0.00 2.57
2420 2610 8.522830 AGTTTTGTTATTTGTCGAATGATGGAT 58.477 29.630 0.00 0.00 0.00 3.41
2443 2633 8.853126 GGATCAAATGATTATCTCCAAATGACA 58.147 33.333 0.00 0.00 34.37 3.58
2482 2672 8.396390 CAGATCAAACTTCAAGATTCATGTAGG 58.604 37.037 0.00 0.00 0.00 3.18
2503 2693 3.119101 GGTGCTAAGAGGACGAGAAATCA 60.119 47.826 0.00 0.00 37.44 2.57
2553 2743 5.300969 AGTTGATTGTGAAATCACCATCG 57.699 39.130 17.64 0.00 46.19 3.84
2554 2744 5.003160 AGTTGATTGTGAAATCACCATCGA 58.997 37.500 17.64 14.72 46.19 3.59
2569 2759 4.813161 CACCATCGATAAGTCAATTGAGCT 59.187 41.667 8.80 6.56 0.00 4.09
2646 2836 6.247229 TGCCCTCATTGATACTTTAGCTAA 57.753 37.500 0.86 0.86 0.00 3.09
2710 2900 6.779860 ACATGTTCTACTCCAATTGGTACTT 58.220 36.000 23.76 9.32 36.34 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.546428 GCACCCTAAATAGCATTTTCAAATTAT 57.454 29.630 0.00 0.00 0.00 1.28
41 42 8.535335 TGCACCCTAAATAGCATTTTCAAATTA 58.465 29.630 0.00 0.00 31.05 1.40
42 43 7.393216 TGCACCCTAAATAGCATTTTCAAATT 58.607 30.769 0.00 0.00 31.05 1.82
43 44 6.945218 TGCACCCTAAATAGCATTTTCAAAT 58.055 32.000 0.00 0.00 31.05 2.32
44 45 6.352016 TGCACCCTAAATAGCATTTTCAAA 57.648 33.333 0.00 0.00 31.05 2.69
45 46 5.991933 TGCACCCTAAATAGCATTTTCAA 57.008 34.783 0.00 0.00 31.05 2.69
46 47 5.337169 GGTTGCACCCTAAATAGCATTTTCA 60.337 40.000 0.00 0.00 36.80 2.69
47 48 5.105351 AGGTTGCACCCTAAATAGCATTTTC 60.105 40.000 0.00 0.00 39.75 2.29
48 49 4.777366 AGGTTGCACCCTAAATAGCATTTT 59.223 37.500 0.00 0.00 39.75 1.82
49 50 4.352893 AGGTTGCACCCTAAATAGCATTT 58.647 39.130 0.00 0.00 39.75 2.32
50 51 3.981212 AGGTTGCACCCTAAATAGCATT 58.019 40.909 0.00 0.00 39.75 3.56
51 52 3.669939 AGGTTGCACCCTAAATAGCAT 57.330 42.857 0.00 0.00 39.75 3.79
52 53 3.449746 AAGGTTGCACCCTAAATAGCA 57.550 42.857 1.94 0.00 39.75 3.49
53 54 5.592688 TGATTAAGGTTGCACCCTAAATAGC 59.407 40.000 1.94 0.00 39.75 2.97
54 55 7.639113 TTGATTAAGGTTGCACCCTAAATAG 57.361 36.000 1.94 0.00 39.75 1.73
55 56 9.349713 CTATTGATTAAGGTTGCACCCTAAATA 57.650 33.333 1.94 3.23 39.75 1.40
56 57 7.201911 GCTATTGATTAAGGTTGCACCCTAAAT 60.202 37.037 1.94 2.21 39.75 1.40
57 58 6.096282 GCTATTGATTAAGGTTGCACCCTAAA 59.904 38.462 1.94 0.00 39.75 1.85
58 59 5.592688 GCTATTGATTAAGGTTGCACCCTAA 59.407 40.000 1.94 1.15 39.75 2.69
59 60 5.130350 GCTATTGATTAAGGTTGCACCCTA 58.870 41.667 1.94 0.00 39.75 3.53
60 61 3.954258 GCTATTGATTAAGGTTGCACCCT 59.046 43.478 0.00 0.00 39.75 4.34
61 62 3.243068 CGCTATTGATTAAGGTTGCACCC 60.243 47.826 0.00 0.00 39.75 4.61
62 63 3.792124 GCGCTATTGATTAAGGTTGCACC 60.792 47.826 0.00 0.00 38.99 5.01
63 64 3.181501 TGCGCTATTGATTAAGGTTGCAC 60.182 43.478 9.73 0.00 0.00 4.57
64 65 3.013219 TGCGCTATTGATTAAGGTTGCA 58.987 40.909 9.73 0.00 0.00 4.08
65 66 3.691049 TGCGCTATTGATTAAGGTTGC 57.309 42.857 9.73 0.00 0.00 4.17
66 67 5.422666 TCATGCGCTATTGATTAAGGTTG 57.577 39.130 9.73 0.00 0.00 3.77
67 68 6.262944 TGAATCATGCGCTATTGATTAAGGTT 59.737 34.615 23.90 10.07 31.96 3.50
68 69 5.764686 TGAATCATGCGCTATTGATTAAGGT 59.235 36.000 23.90 10.04 31.96 3.50
69 70 6.245115 TGAATCATGCGCTATTGATTAAGG 57.755 37.500 23.90 0.00 31.96 2.69
70 71 7.749808 AGATGAATCATGCGCTATTGATTAAG 58.250 34.615 23.90 0.00 31.96 1.85
71 72 7.677454 AGATGAATCATGCGCTATTGATTAA 57.323 32.000 23.90 19.93 31.96 1.40
72 73 7.148356 GGAAGATGAATCATGCGCTATTGATTA 60.148 37.037 23.90 16.28 31.96 1.75
73 74 6.349115 GGAAGATGAATCATGCGCTATTGATT 60.349 38.462 24.01 24.01 34.17 2.57
74 75 5.123502 GGAAGATGAATCATGCGCTATTGAT 59.876 40.000 9.73 11.86 0.00 2.57
75 76 4.453478 GGAAGATGAATCATGCGCTATTGA 59.547 41.667 9.73 9.88 0.00 2.57
76 77 4.454847 AGGAAGATGAATCATGCGCTATTG 59.545 41.667 9.73 3.92 0.00 1.90
77 78 4.649692 AGGAAGATGAATCATGCGCTATT 58.350 39.130 9.73 5.90 0.00 1.73
78 79 4.283363 AGGAAGATGAATCATGCGCTAT 57.717 40.909 9.73 0.00 0.00 2.97
79 80 3.758755 AGGAAGATGAATCATGCGCTA 57.241 42.857 9.73 0.00 0.00 4.26
80 81 2.634815 AGGAAGATGAATCATGCGCT 57.365 45.000 9.73 0.00 0.00 5.92
81 82 3.625938 GAAAGGAAGATGAATCATGCGC 58.374 45.455 0.00 0.00 0.00 6.09
82 83 3.310774 ACGAAAGGAAGATGAATCATGCG 59.689 43.478 0.00 0.00 0.00 4.73
83 84 4.889832 ACGAAAGGAAGATGAATCATGC 57.110 40.909 0.00 0.00 0.00 4.06
84 85 6.292389 GGTACGAAAGGAAGATGAATCATG 57.708 41.667 0.00 0.00 0.00 3.07
103 104 2.467566 ATTTGGGTCAGTGTCGGTAC 57.532 50.000 0.00 0.00 0.00 3.34
104 105 2.773487 CAATTTGGGTCAGTGTCGGTA 58.227 47.619 0.00 0.00 0.00 4.02
105 106 1.604604 CAATTTGGGTCAGTGTCGGT 58.395 50.000 0.00 0.00 0.00 4.69
106 107 0.240945 GCAATTTGGGTCAGTGTCGG 59.759 55.000 0.00 0.00 0.00 4.79
107 108 0.950836 TGCAATTTGGGTCAGTGTCG 59.049 50.000 0.00 0.00 0.00 4.35
108 109 3.451141 TTTGCAATTTGGGTCAGTGTC 57.549 42.857 0.00 0.00 0.00 3.67
109 110 3.387374 TCATTTGCAATTTGGGTCAGTGT 59.613 39.130 0.00 0.00 0.00 3.55
110 111 3.992643 TCATTTGCAATTTGGGTCAGTG 58.007 40.909 0.00 0.00 0.00 3.66
111 112 4.141756 TGTTCATTTGCAATTTGGGTCAGT 60.142 37.500 0.00 0.00 0.00 3.41
112 113 4.211794 GTGTTCATTTGCAATTTGGGTCAG 59.788 41.667 0.00 0.00 0.00 3.51
113 114 4.125703 GTGTTCATTTGCAATTTGGGTCA 58.874 39.130 0.00 0.28 0.00 4.02
114 115 3.498018 GGTGTTCATTTGCAATTTGGGTC 59.502 43.478 0.00 0.00 0.00 4.46
115 116 3.136260 AGGTGTTCATTTGCAATTTGGGT 59.864 39.130 0.00 0.00 0.00 4.51
116 117 3.742385 AGGTGTTCATTTGCAATTTGGG 58.258 40.909 0.00 0.00 0.00 4.12
117 118 4.378774 TGAGGTGTTCATTTGCAATTTGG 58.621 39.130 0.00 0.00 0.00 3.28
118 119 5.697178 TGATGAGGTGTTCATTTGCAATTTG 59.303 36.000 0.00 1.37 46.51 2.32
119 120 5.856156 TGATGAGGTGTTCATTTGCAATTT 58.144 33.333 0.00 0.00 46.51 1.82
120 121 5.471556 TGATGAGGTGTTCATTTGCAATT 57.528 34.783 0.00 0.00 46.51 2.32
121 122 5.471556 TTGATGAGGTGTTCATTTGCAAT 57.528 34.783 0.00 0.00 46.51 3.56
122 123 4.933505 TTGATGAGGTGTTCATTTGCAA 57.066 36.364 0.00 0.00 46.51 4.08
123 124 4.796946 GCTTTGATGAGGTGTTCATTTGCA 60.797 41.667 0.00 0.00 46.51 4.08
124 125 3.676646 GCTTTGATGAGGTGTTCATTTGC 59.323 43.478 0.00 0.00 46.51 3.68
125 126 4.240096 GGCTTTGATGAGGTGTTCATTTG 58.760 43.478 0.00 0.00 46.51 2.32
126 127 3.896888 TGGCTTTGATGAGGTGTTCATTT 59.103 39.130 0.00 0.00 46.51 2.32
127 128 3.499338 TGGCTTTGATGAGGTGTTCATT 58.501 40.909 0.00 0.00 46.51 2.57
129 130 2.655090 TGGCTTTGATGAGGTGTTCA 57.345 45.000 0.00 0.00 40.85 3.18
130 131 4.525912 ATTTGGCTTTGATGAGGTGTTC 57.474 40.909 0.00 0.00 0.00 3.18
131 132 4.503643 CCAATTTGGCTTTGATGAGGTGTT 60.504 41.667 1.71 0.00 0.00 3.32
132 133 3.007182 CCAATTTGGCTTTGATGAGGTGT 59.993 43.478 1.71 0.00 0.00 4.16
133 134 3.258872 TCCAATTTGGCTTTGATGAGGTG 59.741 43.478 10.76 0.00 37.47 4.00
134 135 3.509442 TCCAATTTGGCTTTGATGAGGT 58.491 40.909 10.76 0.00 37.47 3.85
135 136 3.765511 TCTCCAATTTGGCTTTGATGAGG 59.234 43.478 10.76 0.00 37.47 3.86
136 137 4.673580 CGTCTCCAATTTGGCTTTGATGAG 60.674 45.833 10.76 0.72 37.47 2.90
137 138 3.191162 CGTCTCCAATTTGGCTTTGATGA 59.809 43.478 10.76 0.00 37.47 2.92
138 139 3.191162 TCGTCTCCAATTTGGCTTTGATG 59.809 43.478 10.76 10.68 37.47 3.07
139 140 3.420893 TCGTCTCCAATTTGGCTTTGAT 58.579 40.909 10.76 0.00 37.47 2.57
140 141 2.857483 TCGTCTCCAATTTGGCTTTGA 58.143 42.857 10.76 3.73 37.47 2.69
141 142 3.641437 TTCGTCTCCAATTTGGCTTTG 57.359 42.857 10.76 1.43 37.47 2.77
142 143 3.383185 TGTTTCGTCTCCAATTTGGCTTT 59.617 39.130 10.76 0.00 37.47 3.51
143 144 2.955660 TGTTTCGTCTCCAATTTGGCTT 59.044 40.909 10.76 0.00 37.47 4.35
144 145 2.582052 TGTTTCGTCTCCAATTTGGCT 58.418 42.857 10.76 0.00 37.47 4.75
145 146 3.363341 TTGTTTCGTCTCCAATTTGGC 57.637 42.857 10.76 0.00 37.47 4.52
146 147 4.048504 GGTTTGTTTCGTCTCCAATTTGG 58.951 43.478 9.28 9.28 39.43 3.28
147 148 4.677584 TGGTTTGTTTCGTCTCCAATTTG 58.322 39.130 0.00 0.00 0.00 2.32
148 149 4.993029 TGGTTTGTTTCGTCTCCAATTT 57.007 36.364 0.00 0.00 0.00 1.82
149 150 4.320202 CGATGGTTTGTTTCGTCTCCAATT 60.320 41.667 0.00 0.00 0.00 2.32
150 151 3.188460 CGATGGTTTGTTTCGTCTCCAAT 59.812 43.478 0.00 0.00 0.00 3.16
151 152 2.546368 CGATGGTTTGTTTCGTCTCCAA 59.454 45.455 0.00 0.00 0.00 3.53
152 153 2.139917 CGATGGTTTGTTTCGTCTCCA 58.860 47.619 0.00 0.00 0.00 3.86
153 154 2.409975 TCGATGGTTTGTTTCGTCTCC 58.590 47.619 0.00 0.00 34.60 3.71
154 155 5.445540 GGTTATCGATGGTTTGTTTCGTCTC 60.446 44.000 8.54 0.00 34.60 3.36
155 156 4.390909 GGTTATCGATGGTTTGTTTCGTCT 59.609 41.667 8.54 0.00 34.60 4.18
156 157 4.644954 GGTTATCGATGGTTTGTTTCGTC 58.355 43.478 8.54 0.00 34.60 4.20
157 158 3.123959 CGGTTATCGATGGTTTGTTTCGT 59.876 43.478 8.54 0.00 42.43 3.85
158 159 3.123959 ACGGTTATCGATGGTTTGTTTCG 59.876 43.478 8.54 2.06 42.43 3.46
159 160 4.399978 CACGGTTATCGATGGTTTGTTTC 58.600 43.478 8.54 0.00 42.43 2.78
160 161 3.365565 GCACGGTTATCGATGGTTTGTTT 60.366 43.478 8.54 0.00 42.43 2.83
161 162 2.160813 GCACGGTTATCGATGGTTTGTT 59.839 45.455 8.54 0.00 42.43 2.83
162 163 1.735571 GCACGGTTATCGATGGTTTGT 59.264 47.619 8.54 0.00 42.43 2.83
163 164 1.735018 TGCACGGTTATCGATGGTTTG 59.265 47.619 8.54 0.00 42.43 2.93
164 165 2.102070 TGCACGGTTATCGATGGTTT 57.898 45.000 8.54 0.00 42.43 3.27
165 166 1.939934 CATGCACGGTTATCGATGGTT 59.060 47.619 8.54 0.00 42.43 3.67
166 167 1.581934 CATGCACGGTTATCGATGGT 58.418 50.000 8.54 0.00 42.43 3.55
167 168 0.235665 GCATGCACGGTTATCGATGG 59.764 55.000 14.21 0.00 42.43 3.51
168 169 0.936600 TGCATGCACGGTTATCGATG 59.063 50.000 18.46 0.00 42.43 3.84
169 170 0.937304 GTGCATGCACGGTTATCGAT 59.063 50.000 33.20 2.16 42.43 3.59
170 171 2.379054 GTGCATGCACGGTTATCGA 58.621 52.632 33.20 0.00 42.43 3.59
171 172 4.974468 GTGCATGCACGGTTATCG 57.026 55.556 33.20 0.00 45.88 2.92
182 183 3.736100 TTTGCCGAGGCGTGCATG 61.736 61.111 9.78 0.09 45.51 4.06
183 184 3.737172 GTTTGCCGAGGCGTGCAT 61.737 61.111 9.78 0.00 45.51 3.96
194 195 1.249407 TTCCCATGTAACGGTTTGCC 58.751 50.000 0.00 0.00 0.00 4.52
195 196 2.554893 TCTTTCCCATGTAACGGTTTGC 59.445 45.455 0.00 0.00 0.00 3.68
196 197 4.839668 TTCTTTCCCATGTAACGGTTTG 57.160 40.909 0.00 0.00 0.00 2.93
197 198 5.127356 TGTTTTCTTTCCCATGTAACGGTTT 59.873 36.000 0.00 0.00 0.00 3.27
198 199 4.645588 TGTTTTCTTTCCCATGTAACGGTT 59.354 37.500 0.00 0.00 0.00 4.44
199 200 4.208746 TGTTTTCTTTCCCATGTAACGGT 58.791 39.130 0.00 0.00 0.00 4.83
200 201 4.517453 TCTGTTTTCTTTCCCATGTAACGG 59.483 41.667 0.00 0.00 0.00 4.44
201 202 5.682943 TCTGTTTTCTTTCCCATGTAACG 57.317 39.130 0.00 0.00 0.00 3.18
202 203 8.520835 GAAATCTGTTTTCTTTCCCATGTAAC 57.479 34.615 4.38 0.00 40.54 2.50
215 216 6.512415 CGGCATAGGATGAGAAATCTGTTTTC 60.512 42.308 3.55 3.55 43.45 2.29
216 217 5.297776 CGGCATAGGATGAGAAATCTGTTTT 59.702 40.000 0.00 0.00 0.00 2.43
217 218 4.818546 CGGCATAGGATGAGAAATCTGTTT 59.181 41.667 0.00 0.00 0.00 2.83
218 219 4.101585 TCGGCATAGGATGAGAAATCTGTT 59.898 41.667 0.00 0.00 0.00 3.16
219 220 3.643320 TCGGCATAGGATGAGAAATCTGT 59.357 43.478 0.00 0.00 0.00 3.41
220 221 4.021632 TCTCGGCATAGGATGAGAAATCTG 60.022 45.833 0.00 0.00 34.72 2.90
221 222 4.155709 TCTCGGCATAGGATGAGAAATCT 58.844 43.478 0.00 0.00 34.72 2.40
222 223 4.219507 TCTCTCGGCATAGGATGAGAAATC 59.780 45.833 1.58 0.00 37.06 2.17
223 224 4.155709 TCTCTCGGCATAGGATGAGAAAT 58.844 43.478 1.58 0.00 37.06 2.17
224 225 3.566351 TCTCTCGGCATAGGATGAGAAA 58.434 45.455 1.58 0.00 37.06 2.52
225 226 3.153130 CTCTCTCGGCATAGGATGAGAA 58.847 50.000 0.00 0.00 37.06 2.87
226 227 2.373502 TCTCTCTCGGCATAGGATGAGA 59.626 50.000 0.00 0.00 36.18 3.27
227 228 2.749076 CTCTCTCTCGGCATAGGATGAG 59.251 54.545 0.00 0.00 0.00 2.90
228 229 2.373502 TCTCTCTCTCGGCATAGGATGA 59.626 50.000 0.00 0.00 0.00 2.92
229 230 2.749076 CTCTCTCTCTCGGCATAGGATG 59.251 54.545 0.00 0.00 0.00 3.51
230 231 2.642311 TCTCTCTCTCTCGGCATAGGAT 59.358 50.000 0.00 0.00 0.00 3.24
231 232 2.038426 CTCTCTCTCTCTCGGCATAGGA 59.962 54.545 0.00 0.00 0.00 2.94
232 233 2.038426 TCTCTCTCTCTCTCGGCATAGG 59.962 54.545 0.00 0.00 0.00 2.57
233 234 3.401033 TCTCTCTCTCTCTCGGCATAG 57.599 52.381 0.00 0.00 0.00 2.23
234 235 4.775253 TCTATCTCTCTCTCTCTCGGCATA 59.225 45.833 0.00 0.00 0.00 3.14
235 236 2.957402 ATCTCTCTCTCTCTCGGCAT 57.043 50.000 0.00 0.00 0.00 4.40
236 237 2.969262 TCTATCTCTCTCTCTCTCGGCA 59.031 50.000 0.00 0.00 0.00 5.69
237 238 3.678056 TCTATCTCTCTCTCTCTCGGC 57.322 52.381 0.00 0.00 0.00 5.54
238 239 6.775594 TCTATCTATCTCTCTCTCTCTCGG 57.224 45.833 0.00 0.00 0.00 4.63
239 240 9.343539 TCTATCTATCTATCTCTCTCTCTCTCG 57.656 40.741 0.00 0.00 0.00 4.04
254 255 9.913310 CTCTCTCTCTCTCTCTCTATCTATCTA 57.087 40.741 0.00 0.00 0.00 1.98
255 256 8.619281 TCTCTCTCTCTCTCTCTCTATCTATCT 58.381 40.741 0.00 0.00 0.00 1.98
256 257 8.815565 TCTCTCTCTCTCTCTCTCTATCTATC 57.184 42.308 0.00 0.00 0.00 2.08
257 258 8.619281 TCTCTCTCTCTCTCTCTCTCTATCTAT 58.381 40.741 0.00 0.00 0.00 1.98
258 259 7.990055 TCTCTCTCTCTCTCTCTCTCTATCTA 58.010 42.308 0.00 0.00 0.00 1.98
259 260 6.857848 TCTCTCTCTCTCTCTCTCTCTATCT 58.142 44.000 0.00 0.00 0.00 1.98
260 261 6.945435 TCTCTCTCTCTCTCTCTCTCTCTATC 59.055 46.154 0.00 0.00 0.00 2.08
261 262 6.857848 TCTCTCTCTCTCTCTCTCTCTCTAT 58.142 44.000 0.00 0.00 0.00 1.98
262 263 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
263 264 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
264 265 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
265 266 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
266 267 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
267 268 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
268 269 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
269 270 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
270 271 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
271 272 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
272 273 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
273 274 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
274 275 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
275 276 4.648762 CACTCTCTCTCTCTCTCTCTCTCT 59.351 50.000 0.00 0.00 0.00 3.10
276 277 4.646945 TCACTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
277 278 4.614475 TCACTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
278 279 5.344743 TTCACTCTCTCTCTCTCTCTCTC 57.655 47.826 0.00 0.00 0.00 3.20
279 280 4.383552 GCTTCACTCTCTCTCTCTCTCTCT 60.384 50.000 0.00 0.00 0.00 3.10
280 281 3.873952 GCTTCACTCTCTCTCTCTCTCTC 59.126 52.174 0.00 0.00 0.00 3.20
281 282 3.370953 GGCTTCACTCTCTCTCTCTCTCT 60.371 52.174 0.00 0.00 0.00 3.10
282 283 2.945668 GGCTTCACTCTCTCTCTCTCTC 59.054 54.545 0.00 0.00 0.00 3.20
283 284 2.578021 AGGCTTCACTCTCTCTCTCTCT 59.422 50.000 0.00 0.00 0.00 3.10
284 285 2.945668 GAGGCTTCACTCTCTCTCTCTC 59.054 54.545 0.00 0.00 34.65 3.20
285 286 2.680805 CGAGGCTTCACTCTCTCTCTCT 60.681 54.545 0.00 0.00 35.33 3.10
286 287 1.670811 CGAGGCTTCACTCTCTCTCTC 59.329 57.143 0.00 0.00 35.33 3.20
287 288 1.681780 CCGAGGCTTCACTCTCTCTCT 60.682 57.143 0.00 0.00 35.33 3.10
288 289 0.738389 CCGAGGCTTCACTCTCTCTC 59.262 60.000 0.00 0.00 35.33 3.20
289 290 1.319614 GCCGAGGCTTCACTCTCTCT 61.320 60.000 6.90 0.00 38.26 3.10
290 291 1.140804 GCCGAGGCTTCACTCTCTC 59.859 63.158 6.90 0.00 38.26 3.20
291 292 1.188219 TTGCCGAGGCTTCACTCTCT 61.188 55.000 15.75 0.00 42.51 3.10
292 293 0.739112 CTTGCCGAGGCTTCACTCTC 60.739 60.000 15.75 0.00 42.51 3.20
293 294 1.188219 TCTTGCCGAGGCTTCACTCT 61.188 55.000 15.75 0.00 42.51 3.24
294 295 1.016653 GTCTTGCCGAGGCTTCACTC 61.017 60.000 15.75 0.00 42.51 3.51
295 296 1.004440 GTCTTGCCGAGGCTTCACT 60.004 57.895 15.75 0.00 42.51 3.41
296 297 2.035442 GGTCTTGCCGAGGCTTCAC 61.035 63.158 15.75 8.26 42.51 3.18
297 298 0.902984 TAGGTCTTGCCGAGGCTTCA 60.903 55.000 15.75 0.00 43.70 3.02
298 299 0.460459 GTAGGTCTTGCCGAGGCTTC 60.460 60.000 15.75 3.26 43.70 3.86
299 300 0.905337 AGTAGGTCTTGCCGAGGCTT 60.905 55.000 15.75 0.00 43.70 4.35
300 301 1.305381 AGTAGGTCTTGCCGAGGCT 60.305 57.895 15.75 0.00 43.70 4.58
301 302 1.153549 CAGTAGGTCTTGCCGAGGC 60.154 63.158 7.26 7.26 43.70 4.70
302 303 1.517832 CCAGTAGGTCTTGCCGAGG 59.482 63.158 0.00 0.00 43.70 4.63
303 304 1.517832 CCCAGTAGGTCTTGCCGAG 59.482 63.158 0.00 0.00 43.70 4.63
304 305 1.987855 CCCCAGTAGGTCTTGCCGA 60.988 63.158 0.00 0.00 43.70 5.54
305 306 2.291043 ACCCCAGTAGGTCTTGCCG 61.291 63.158 0.00 0.00 43.70 5.69
306 307 3.821886 ACCCCAGTAGGTCTTGCC 58.178 61.111 0.00 0.00 33.81 4.52
312 313 1.149288 TGACTCAAGACCCCAGTAGGT 59.851 52.381 0.00 0.00 45.12 3.08
313 314 1.938585 TGACTCAAGACCCCAGTAGG 58.061 55.000 0.00 0.00 0.00 3.18
314 315 2.169352 CCATGACTCAAGACCCCAGTAG 59.831 54.545 0.00 0.00 0.00 2.57
315 316 2.187958 CCATGACTCAAGACCCCAGTA 58.812 52.381 0.00 0.00 0.00 2.74
316 317 0.987294 CCATGACTCAAGACCCCAGT 59.013 55.000 0.00 0.00 0.00 4.00
317 318 0.987294 ACCATGACTCAAGACCCCAG 59.013 55.000 0.00 0.00 0.00 4.45
318 319 1.444933 AACCATGACTCAAGACCCCA 58.555 50.000 0.00 0.00 0.00 4.96
319 320 3.933861 ATAACCATGACTCAAGACCCC 57.066 47.619 0.00 0.00 0.00 4.95
320 321 3.947834 CCAATAACCATGACTCAAGACCC 59.052 47.826 0.00 0.00 0.00 4.46
321 322 4.843728 TCCAATAACCATGACTCAAGACC 58.156 43.478 0.00 0.00 0.00 3.85
322 323 7.253422 CAAATCCAATAACCATGACTCAAGAC 58.747 38.462 0.00 0.00 0.00 3.01
323 324 6.377996 CCAAATCCAATAACCATGACTCAAGA 59.622 38.462 0.00 0.00 0.00 3.02
324 325 6.406177 CCCAAATCCAATAACCATGACTCAAG 60.406 42.308 0.00 0.00 0.00 3.02
325 326 5.421693 CCCAAATCCAATAACCATGACTCAA 59.578 40.000 0.00 0.00 0.00 3.02
326 327 4.955450 CCCAAATCCAATAACCATGACTCA 59.045 41.667 0.00 0.00 0.00 3.41
327 328 4.956075 ACCCAAATCCAATAACCATGACTC 59.044 41.667 0.00 0.00 0.00 3.36
328 329 4.946646 ACCCAAATCCAATAACCATGACT 58.053 39.130 0.00 0.00 0.00 3.41
329 330 4.202010 CGACCCAAATCCAATAACCATGAC 60.202 45.833 0.00 0.00 0.00 3.06
330 331 3.951037 CGACCCAAATCCAATAACCATGA 59.049 43.478 0.00 0.00 0.00 3.07
331 332 3.699038 ACGACCCAAATCCAATAACCATG 59.301 43.478 0.00 0.00 0.00 3.66
332 333 3.699038 CACGACCCAAATCCAATAACCAT 59.301 43.478 0.00 0.00 0.00 3.55
333 334 3.085533 CACGACCCAAATCCAATAACCA 58.914 45.455 0.00 0.00 0.00 3.67
334 335 2.159296 GCACGACCCAAATCCAATAACC 60.159 50.000 0.00 0.00 0.00 2.85
335 336 2.477189 CGCACGACCCAAATCCAATAAC 60.477 50.000 0.00 0.00 0.00 1.89
336 337 1.740585 CGCACGACCCAAATCCAATAA 59.259 47.619 0.00 0.00 0.00 1.40
337 338 1.374560 CGCACGACCCAAATCCAATA 58.625 50.000 0.00 0.00 0.00 1.90
338 339 1.312371 CCGCACGACCCAAATCCAAT 61.312 55.000 0.00 0.00 0.00 3.16
339 340 1.969064 CCGCACGACCCAAATCCAA 60.969 57.895 0.00 0.00 0.00 3.53
340 341 1.828461 TACCGCACGACCCAAATCCA 61.828 55.000 0.00 0.00 0.00 3.41
341 342 1.078988 TACCGCACGACCCAAATCC 60.079 57.895 0.00 0.00 0.00 3.01
342 343 0.390735 AGTACCGCACGACCCAAATC 60.391 55.000 0.00 0.00 0.00 2.17
343 344 0.035739 AAGTACCGCACGACCCAAAT 59.964 50.000 0.00 0.00 0.00 2.32
344 345 0.179051 AAAGTACCGCACGACCCAAA 60.179 50.000 0.00 0.00 0.00 3.28
345 346 0.600782 GAAAGTACCGCACGACCCAA 60.601 55.000 0.00 0.00 0.00 4.12
346 347 1.005867 GAAAGTACCGCACGACCCA 60.006 57.895 0.00 0.00 0.00 4.51
347 348 0.320160 AAGAAAGTACCGCACGACCC 60.320 55.000 0.00 0.00 0.00 4.46
348 349 1.066136 GAAGAAAGTACCGCACGACC 58.934 55.000 0.00 0.00 0.00 4.79
349 350 1.984297 GAGAAGAAAGTACCGCACGAC 59.016 52.381 0.00 0.00 0.00 4.34
350 351 1.068055 GGAGAAGAAAGTACCGCACGA 60.068 52.381 0.00 0.00 0.00 4.35
351 352 1.067776 AGGAGAAGAAAGTACCGCACG 60.068 52.381 0.00 0.00 0.00 5.34
352 353 2.288886 ACAGGAGAAGAAAGTACCGCAC 60.289 50.000 0.00 0.00 0.00 5.34
353 354 1.968493 ACAGGAGAAGAAAGTACCGCA 59.032 47.619 0.00 0.00 0.00 5.69
354 355 2.745515 ACAGGAGAAGAAAGTACCGC 57.254 50.000 0.00 0.00 0.00 5.68
355 356 5.130292 TGTAACAGGAGAAGAAAGTACCG 57.870 43.478 0.00 0.00 0.00 4.02
356 357 5.404667 CGTTGTAACAGGAGAAGAAAGTACC 59.595 44.000 0.00 0.00 0.00 3.34
357 358 5.107568 GCGTTGTAACAGGAGAAGAAAGTAC 60.108 44.000 0.00 0.00 0.00 2.73
358 359 4.986659 GCGTTGTAACAGGAGAAGAAAGTA 59.013 41.667 0.00 0.00 0.00 2.24
359 360 3.808174 GCGTTGTAACAGGAGAAGAAAGT 59.192 43.478 0.00 0.00 0.00 2.66
360 361 3.807622 TGCGTTGTAACAGGAGAAGAAAG 59.192 43.478 0.00 0.00 0.00 2.62
361 362 3.558418 GTGCGTTGTAACAGGAGAAGAAA 59.442 43.478 0.00 0.00 0.00 2.52
362 363 3.128349 GTGCGTTGTAACAGGAGAAGAA 58.872 45.455 0.00 0.00 0.00 2.52
363 364 2.750948 GTGCGTTGTAACAGGAGAAGA 58.249 47.619 0.00 0.00 0.00 2.87
364 365 1.455786 CGTGCGTTGTAACAGGAGAAG 59.544 52.381 0.00 0.00 0.00 2.85
365 366 1.493772 CGTGCGTTGTAACAGGAGAA 58.506 50.000 0.00 0.00 0.00 2.87
366 367 0.319211 CCGTGCGTTGTAACAGGAGA 60.319 55.000 0.00 0.00 0.00 3.71
367 368 1.289109 CCCGTGCGTTGTAACAGGAG 61.289 60.000 0.00 0.00 0.00 3.69
368 369 1.301087 CCCGTGCGTTGTAACAGGA 60.301 57.895 0.00 0.00 0.00 3.86
369 370 2.961669 GCCCGTGCGTTGTAACAGG 61.962 63.158 0.00 0.00 0.00 4.00
370 371 0.668096 TAGCCCGTGCGTTGTAACAG 60.668 55.000 0.00 0.00 44.33 3.16
371 372 0.037139 ATAGCCCGTGCGTTGTAACA 60.037 50.000 0.00 0.00 44.33 2.41
372 373 1.081094 AATAGCCCGTGCGTTGTAAC 58.919 50.000 0.00 0.00 44.33 2.50
373 374 1.810959 AAATAGCCCGTGCGTTGTAA 58.189 45.000 0.00 0.00 44.33 2.41
374 375 1.465387 CAAAATAGCCCGTGCGTTGTA 59.535 47.619 0.00 0.00 44.33 2.41
375 376 0.239879 CAAAATAGCCCGTGCGTTGT 59.760 50.000 0.00 0.00 44.33 3.32
376 377 1.070471 GCAAAATAGCCCGTGCGTTG 61.070 55.000 0.00 0.00 44.33 4.10
377 378 1.211709 GCAAAATAGCCCGTGCGTT 59.788 52.632 0.00 0.00 44.33 4.84
378 379 1.674322 AGCAAAATAGCCCGTGCGT 60.674 52.632 0.00 0.00 44.33 5.24
379 380 1.226379 CAGCAAAATAGCCCGTGCG 60.226 57.895 0.00 0.00 44.33 5.34
380 381 0.243636 AACAGCAAAATAGCCCGTGC 59.756 50.000 0.00 0.00 37.26 5.34
381 382 2.723124 AAACAGCAAAATAGCCCGTG 57.277 45.000 0.00 0.00 34.23 4.94
382 383 3.744238 AAAAACAGCAAAATAGCCCGT 57.256 38.095 0.00 0.00 34.23 5.28
410 411 8.714179 GGCTTGTTTAGTTAACTTTGTTGTTTT 58.286 29.630 14.49 0.00 37.64 2.43
411 412 7.062488 CGGCTTGTTTAGTTAACTTTGTTGTTT 59.938 33.333 14.49 0.00 37.64 2.83
412 413 6.528774 CGGCTTGTTTAGTTAACTTTGTTGTT 59.471 34.615 14.49 0.00 37.64 2.83
413 414 6.031471 CGGCTTGTTTAGTTAACTTTGTTGT 58.969 36.000 14.49 0.00 37.64 3.32
414 415 5.457473 CCGGCTTGTTTAGTTAACTTTGTTG 59.543 40.000 14.49 2.08 37.64 3.33
415 416 5.584442 CCGGCTTGTTTAGTTAACTTTGTT 58.416 37.500 14.49 0.00 37.64 2.83
416 417 4.498513 GCCGGCTTGTTTAGTTAACTTTGT 60.499 41.667 22.15 0.00 37.64 2.83
417 418 3.978855 GCCGGCTTGTTTAGTTAACTTTG 59.021 43.478 22.15 0.00 37.64 2.77
418 419 3.633065 TGCCGGCTTGTTTAGTTAACTTT 59.367 39.130 29.70 0.00 37.64 2.66
419 420 3.004002 GTGCCGGCTTGTTTAGTTAACTT 59.996 43.478 29.70 0.00 37.64 2.66
420 421 2.551032 GTGCCGGCTTGTTTAGTTAACT 59.449 45.455 29.70 13.68 37.64 2.24
421 422 2.291190 TGTGCCGGCTTGTTTAGTTAAC 59.709 45.455 29.70 13.12 37.26 2.01
422 423 2.573369 TGTGCCGGCTTGTTTAGTTAA 58.427 42.857 29.70 0.00 0.00 2.01
423 424 2.257691 TGTGCCGGCTTGTTTAGTTA 57.742 45.000 29.70 0.00 0.00 2.24
424 425 1.066454 GTTGTGCCGGCTTGTTTAGTT 59.934 47.619 29.70 0.00 0.00 2.24
425 426 0.666374 GTTGTGCCGGCTTGTTTAGT 59.334 50.000 29.70 0.00 0.00 2.24
426 427 0.951558 AGTTGTGCCGGCTTGTTTAG 59.048 50.000 29.70 0.00 0.00 1.85
427 428 0.948678 GAGTTGTGCCGGCTTGTTTA 59.051 50.000 29.70 1.94 0.00 2.01
428 429 0.751643 AGAGTTGTGCCGGCTTGTTT 60.752 50.000 29.70 10.68 0.00 2.83
429 430 0.107831 TAGAGTTGTGCCGGCTTGTT 59.892 50.000 29.70 9.47 0.00 2.83
430 431 0.324943 ATAGAGTTGTGCCGGCTTGT 59.675 50.000 29.70 7.59 0.00 3.16
431 432 1.009829 GATAGAGTTGTGCCGGCTTG 58.990 55.000 29.70 0.00 0.00 4.01
432 433 0.460284 CGATAGAGTTGTGCCGGCTT 60.460 55.000 29.70 7.88 39.76 4.35
433 434 1.141881 CGATAGAGTTGTGCCGGCT 59.858 57.895 29.70 6.37 39.76 5.52
434 435 1.141019 TCGATAGAGTTGTGCCGGC 59.859 57.895 22.73 22.73 42.67 6.13
446 447 2.478894 ACTTTGTTGGTTGCGTCGATAG 59.521 45.455 0.00 0.00 0.00 2.08
447 448 2.485903 ACTTTGTTGGTTGCGTCGATA 58.514 42.857 0.00 0.00 0.00 2.92
448 449 1.305201 ACTTTGTTGGTTGCGTCGAT 58.695 45.000 0.00 0.00 0.00 3.59
449 450 1.088306 AACTTTGTTGGTTGCGTCGA 58.912 45.000 0.00 0.00 0.00 4.20
450 451 2.031191 AGTAACTTTGTTGGTTGCGTCG 59.969 45.455 0.00 0.00 35.15 5.12
451 452 3.685836 AGTAACTTTGTTGGTTGCGTC 57.314 42.857 0.00 0.00 35.15 5.19
452 453 5.061179 AGATAGTAACTTTGTTGGTTGCGT 58.939 37.500 0.00 0.00 35.15 5.24
453 454 5.607119 AGATAGTAACTTTGTTGGTTGCG 57.393 39.130 0.00 0.00 35.15 4.85
454 455 8.494016 AGATAGATAGTAACTTTGTTGGTTGC 57.506 34.615 0.00 0.00 0.00 4.17
479 480 9.919348 GTGACGAGTTAACTTTGTTGTTTTATA 57.081 29.630 10.02 0.00 0.00 0.98
480 481 7.911727 GGTGACGAGTTAACTTTGTTGTTTTAT 59.088 33.333 10.02 0.00 0.00 1.40
481 482 7.242783 GGTGACGAGTTAACTTTGTTGTTTTA 58.757 34.615 10.02 0.00 0.00 1.52
482 483 6.088173 GGTGACGAGTTAACTTTGTTGTTTT 58.912 36.000 10.02 0.00 0.00 2.43
483 484 5.392272 GGGTGACGAGTTAACTTTGTTGTTT 60.392 40.000 10.02 0.00 0.00 2.83
484 485 4.095334 GGGTGACGAGTTAACTTTGTTGTT 59.905 41.667 10.02 0.00 0.00 2.83
485 486 3.624410 GGGTGACGAGTTAACTTTGTTGT 59.376 43.478 10.02 4.06 0.00 3.32
486 487 3.875134 AGGGTGACGAGTTAACTTTGTTG 59.125 43.478 10.02 0.89 0.00 3.33
487 488 4.146745 AGGGTGACGAGTTAACTTTGTT 57.853 40.909 10.02 0.00 0.00 2.83
488 489 3.832615 AGGGTGACGAGTTAACTTTGT 57.167 42.857 10.02 11.56 0.00 2.83
489 490 4.561606 CGATAGGGTGACGAGTTAACTTTG 59.438 45.833 10.02 8.31 0.00 2.77
490 491 4.460382 TCGATAGGGTGACGAGTTAACTTT 59.540 41.667 10.02 0.00 0.00 2.66
491 492 4.012374 TCGATAGGGTGACGAGTTAACTT 58.988 43.478 10.02 0.00 0.00 2.66
492 493 3.614092 TCGATAGGGTGACGAGTTAACT 58.386 45.455 8.13 8.13 0.00 2.24
493 494 3.950078 CTCGATAGGGTGACGAGTTAAC 58.050 50.000 0.00 0.00 45.23 2.01
499 500 0.467474 ATGCCTCGATAGGGTGACGA 60.467 55.000 0.00 0.00 43.87 4.20
500 501 0.039074 GATGCCTCGATAGGGTGACG 60.039 60.000 0.00 0.00 43.87 4.35
501 502 1.333177 AGATGCCTCGATAGGGTGAC 58.667 55.000 0.00 0.00 43.87 3.67
502 503 2.971901 TAGATGCCTCGATAGGGTGA 57.028 50.000 0.00 0.00 43.87 4.02
503 504 3.516981 CATAGATGCCTCGATAGGGTG 57.483 52.381 0.00 0.00 43.87 4.61
516 517 2.578786 TCACCTTGCCATGCATAGATG 58.421 47.619 0.00 0.00 38.76 2.90
517 518 3.418995 GATCACCTTGCCATGCATAGAT 58.581 45.455 0.00 0.00 38.76 1.98
518 519 2.807837 CGATCACCTTGCCATGCATAGA 60.808 50.000 0.00 0.00 38.76 1.98
519 520 1.534163 CGATCACCTTGCCATGCATAG 59.466 52.381 0.00 0.00 38.76 2.23
520 521 1.134128 ACGATCACCTTGCCATGCATA 60.134 47.619 0.00 0.00 38.76 3.14
521 522 0.394762 ACGATCACCTTGCCATGCAT 60.395 50.000 0.00 0.00 38.76 3.96
522 523 1.002257 ACGATCACCTTGCCATGCA 60.002 52.632 0.00 0.00 36.47 3.96
523 524 1.308069 ACACGATCACCTTGCCATGC 61.308 55.000 0.00 0.00 0.00 4.06
524 525 0.729116 GACACGATCACCTTGCCATG 59.271 55.000 0.00 0.00 0.00 3.66
525 526 0.324614 TGACACGATCACCTTGCCAT 59.675 50.000 0.00 0.00 29.99 4.40
526 527 0.324614 ATGACACGATCACCTTGCCA 59.675 50.000 0.00 0.00 41.24 4.92
527 528 1.009829 GATGACACGATCACCTTGCC 58.990 55.000 0.00 0.00 41.24 4.52
528 529 1.009829 GGATGACACGATCACCTTGC 58.990 55.000 0.00 0.00 41.24 4.01
529 530 1.280982 CGGATGACACGATCACCTTG 58.719 55.000 0.00 0.00 41.24 3.61
530 531 0.175760 CCGGATGACACGATCACCTT 59.824 55.000 0.00 0.00 41.24 3.50
531 532 0.683179 TCCGGATGACACGATCACCT 60.683 55.000 0.00 0.00 41.24 4.00
532 533 0.389391 ATCCGGATGACACGATCACC 59.611 55.000 18.33 0.00 41.24 4.02
533 534 3.577649 ATATCCGGATGACACGATCAC 57.422 47.619 27.55 0.00 41.24 3.06
534 535 3.860754 GCAATATCCGGATGACACGATCA 60.861 47.826 27.55 3.45 43.13 2.92
535 536 2.668457 GCAATATCCGGATGACACGATC 59.332 50.000 27.55 4.16 0.00 3.69
536 537 2.037121 TGCAATATCCGGATGACACGAT 59.963 45.455 27.55 8.32 0.00 3.73
537 538 1.410882 TGCAATATCCGGATGACACGA 59.589 47.619 27.55 5.94 0.00 4.35
640 641 1.065199 GGGCATGTGAGTCTGATTGGA 60.065 52.381 0.00 0.00 0.00 3.53
659 660 4.380867 CCTCAACAAAAATCTCGAATGGGG 60.381 45.833 0.00 0.00 0.00 4.96
696 699 4.893608 GAAAACTATGGGGTTTTGCATGT 58.106 39.130 9.56 0.00 45.62 3.21
752 760 0.389948 ACGCTCATCAAACCGGTCTC 60.390 55.000 8.04 0.00 0.00 3.36
765 773 3.124806 CGTACTCTGAAGTTAGACGCTCA 59.875 47.826 0.00 0.00 36.92 4.26
769 937 4.658713 TGTCGTACTCTGAAGTTAGACG 57.341 45.455 0.00 0.00 40.55 4.18
780 948 9.656040 CTAGGTGTTCTATATATGTCGTACTCT 57.344 37.037 0.00 0.00 0.00 3.24
816 984 2.009774 AGTCATAAGCGGCAACATGTC 58.990 47.619 0.00 0.61 0.00 3.06
993 1163 2.029649 GCGGGATGAATTCATGGATTGG 60.030 50.000 25.37 9.32 36.57 3.16
1034 1204 2.048222 CGAGCAAGGCAAGGACGA 60.048 61.111 0.00 0.00 0.00 4.20
1089 1259 5.812127 GCAGTGTGTCAAAAAGAAAGGAAAT 59.188 36.000 0.00 0.00 0.00 2.17
1106 1276 2.539476 GACAACAAAAAGGGCAGTGTG 58.461 47.619 0.00 0.00 0.00 3.82
1210 1381 8.554528 CGAATATTCCTTGTCATATATGATGGC 58.445 37.037 18.18 6.76 39.30 4.40
1404 1577 9.461312 TGCAATAAGTTTGTCTACTAATGGAAT 57.539 29.630 0.00 0.00 0.00 3.01
1405 1578 8.856153 TGCAATAAGTTTGTCTACTAATGGAA 57.144 30.769 0.00 0.00 0.00 3.53
1406 1579 8.318412 TCTGCAATAAGTTTGTCTACTAATGGA 58.682 33.333 0.00 0.00 0.00 3.41
1407 1580 8.492673 TCTGCAATAAGTTTGTCTACTAATGG 57.507 34.615 0.00 0.00 0.00 3.16
1408 1581 9.371136 TCTCTGCAATAAGTTTGTCTACTAATG 57.629 33.333 0.00 0.00 0.00 1.90
1409 1582 9.593134 CTCTCTGCAATAAGTTTGTCTACTAAT 57.407 33.333 0.00 0.00 0.00 1.73
1410 1583 8.585881 ACTCTCTGCAATAAGTTTGTCTACTAA 58.414 33.333 0.00 0.00 0.00 2.24
1411 1584 8.123639 ACTCTCTGCAATAAGTTTGTCTACTA 57.876 34.615 0.00 0.00 0.00 1.82
1412 1585 6.998802 ACTCTCTGCAATAAGTTTGTCTACT 58.001 36.000 0.00 0.00 0.00 2.57
1413 1586 7.813148 TGTACTCTCTGCAATAAGTTTGTCTAC 59.187 37.037 0.00 0.00 0.00 2.59
1414 1587 7.892609 TGTACTCTCTGCAATAAGTTTGTCTA 58.107 34.615 0.00 0.00 0.00 2.59
1415 1588 6.759272 TGTACTCTCTGCAATAAGTTTGTCT 58.241 36.000 0.00 0.00 0.00 3.41
1416 1589 7.602517 ATGTACTCTCTGCAATAAGTTTGTC 57.397 36.000 0.00 0.00 0.00 3.18
1417 1590 9.102757 CATATGTACTCTCTGCAATAAGTTTGT 57.897 33.333 0.00 0.00 0.00 2.83
1418 1591 8.066595 GCATATGTACTCTCTGCAATAAGTTTG 58.933 37.037 4.29 0.00 33.13 2.93
1419 1592 7.042456 CGCATATGTACTCTCTGCAATAAGTTT 60.042 37.037 4.29 0.00 33.13 2.66
1420 1593 6.422100 CGCATATGTACTCTCTGCAATAAGTT 59.578 38.462 4.29 0.00 33.13 2.66
1421 1594 5.923114 CGCATATGTACTCTCTGCAATAAGT 59.077 40.000 4.29 0.00 33.13 2.24
1422 1595 5.347093 CCGCATATGTACTCTCTGCAATAAG 59.653 44.000 4.29 0.00 33.13 1.73
1423 1596 5.230182 CCGCATATGTACTCTCTGCAATAA 58.770 41.667 4.29 0.00 33.13 1.40
1424 1597 4.809673 CCGCATATGTACTCTCTGCAATA 58.190 43.478 4.29 0.00 33.13 1.90
1425 1598 3.657634 CCGCATATGTACTCTCTGCAAT 58.342 45.455 4.29 0.00 33.13 3.56
1426 1599 2.803133 GCCGCATATGTACTCTCTGCAA 60.803 50.000 4.29 0.00 33.13 4.08
1427 1600 1.269778 GCCGCATATGTACTCTCTGCA 60.270 52.381 4.29 0.00 33.13 4.41
1428 1601 1.423395 GCCGCATATGTACTCTCTGC 58.577 55.000 4.29 0.00 0.00 4.26
1429 1602 1.341209 TGGCCGCATATGTACTCTCTG 59.659 52.381 4.29 0.00 0.00 3.35
1430 1603 1.341531 GTGGCCGCATATGTACTCTCT 59.658 52.381 12.58 0.00 0.00 3.10
1431 1604 1.605712 GGTGGCCGCATATGTACTCTC 60.606 57.143 19.98 0.00 0.00 3.20
1432 1605 0.393077 GGTGGCCGCATATGTACTCT 59.607 55.000 19.98 0.00 0.00 3.24
1433 1606 0.105964 TGGTGGCCGCATATGTACTC 59.894 55.000 19.98 0.00 0.00 2.59
1434 1607 0.179056 GTGGTGGCCGCATATGTACT 60.179 55.000 19.98 0.00 33.65 2.73
1435 1608 0.462937 TGTGGTGGCCGCATATGTAC 60.463 55.000 19.98 7.29 39.28 2.90
1436 1609 1.908483 TGTGGTGGCCGCATATGTA 59.092 52.632 19.98 0.00 39.28 2.29
1437 1610 2.674138 TGTGGTGGCCGCATATGT 59.326 55.556 19.98 0.00 39.28 2.29
1443 1616 3.127533 GTCTCATGTGGTGGCCGC 61.128 66.667 8.12 8.12 34.12 6.53
1444 1617 0.177836 TATGTCTCATGTGGTGGCCG 59.822 55.000 0.00 0.00 0.00 6.13
1445 1618 1.065491 TGTATGTCTCATGTGGTGGCC 60.065 52.381 0.00 0.00 0.00 5.36
1446 1619 2.401583 TGTATGTCTCATGTGGTGGC 57.598 50.000 0.00 0.00 0.00 5.01
1447 1620 4.101585 ACCTATGTATGTCTCATGTGGTGG 59.898 45.833 0.00 0.00 34.70 4.61
1448 1621 5.052481 CACCTATGTATGTCTCATGTGGTG 58.948 45.833 13.57 13.57 40.63 4.17
1449 1622 4.716784 ACACCTATGTATGTCTCATGTGGT 59.283 41.667 0.00 0.00 37.26 4.16
1450 1623 5.282055 ACACCTATGTATGTCTCATGTGG 57.718 43.478 0.00 0.00 37.26 4.17
1465 1638 8.630054 TTAGTGCAAAAATGTAAGACACCTAT 57.370 30.769 0.00 0.00 0.00 2.57
1496 1669 3.568430 TCACGCATATGTACTGGTAGGAG 59.432 47.826 4.29 0.00 0.00 3.69
1504 1677 8.607441 AATACATCAAATCACGCATATGTACT 57.393 30.769 4.29 0.00 33.88 2.73
1569 1742 4.221422 GCGCCGGTGCCATCTCTA 62.221 66.667 29.80 0.00 0.00 2.43
1693 1866 2.046892 CGGTGGAGGCCTTCACAG 60.047 66.667 39.07 33.36 35.74 3.66
1946 2134 5.794894 TGGCCAACTTCAAGTTTACAAAAA 58.205 33.333 0.61 0.00 36.03 1.94
1947 2135 5.407407 TGGCCAACTTCAAGTTTACAAAA 57.593 34.783 0.61 0.00 36.03 2.44
1948 2136 5.606348 ATGGCCAACTTCAAGTTTACAAA 57.394 34.783 10.96 0.00 36.03 2.83
2000 2188 6.954616 TTGCATGATCACAAATGAATGAAC 57.045 33.333 0.00 0.00 38.69 3.18
2073 2261 7.461107 TGTCAACGTTCAAAAGTTAGAGAAAG 58.539 34.615 0.00 0.00 0.00 2.62
2086 2274 3.591023 TGTCTTCACTGTCAACGTTCAA 58.409 40.909 0.00 0.00 0.00 2.69
2114 2302 1.271934 CCACCAAAATCGTTGCATCCA 59.728 47.619 0.00 0.00 0.00 3.41
2142 2330 3.577649 TTGAGATCTCCGTGTTCAGAC 57.422 47.619 20.03 0.00 0.00 3.51
2183 2371 7.169308 GGTGGAGCCGAAATATTATATATCGTG 59.831 40.741 5.92 0.41 0.00 4.35
2201 2390 2.206576 ACTGATTCTTTGGTGGAGCC 57.793 50.000 0.00 0.00 37.90 4.70
2314 2504 5.016831 ACTTCACTCCCTTTTTGACAAACT 58.983 37.500 0.00 0.00 0.00 2.66
2325 2515 8.706322 ACATAAATAAACAACTTCACTCCCTT 57.294 30.769 0.00 0.00 0.00 3.95
2327 2517 8.336801 AGACATAAATAAACAACTTCACTCCC 57.663 34.615 0.00 0.00 0.00 4.30
2347 2537 7.492669 CGTCATTAATACCAAGAGACAAGACAT 59.507 37.037 0.00 0.00 0.00 3.06
2374 2564 5.263968 ACTATGAAACTACCGATCACTGG 57.736 43.478 0.00 0.00 0.00 4.00
2393 2583 9.004717 TCCATCATTCGACAAATAACAAAACTA 57.995 29.630 0.00 0.00 0.00 2.24
2413 2603 8.999905 TTTGGAGATAATCATTTGATCCATCA 57.000 30.769 13.39 0.00 32.58 3.07
2420 2610 9.246670 AGTTGTCATTTGGAGATAATCATTTGA 57.753 29.630 0.00 0.00 0.00 2.69
2443 2633 7.881751 TGAAGTTTGATCTGATGATTCTCAGTT 59.118 33.333 0.00 5.34 42.68 3.16
2482 2672 4.109050 CTGATTTCTCGTCCTCTTAGCAC 58.891 47.826 0.00 0.00 0.00 4.40
2553 2743 7.761704 TGTCTACAAGAGCTCAATTGACTTATC 59.238 37.037 19.42 0.56 0.00 1.75
2554 2744 7.615403 TGTCTACAAGAGCTCAATTGACTTAT 58.385 34.615 19.42 0.00 0.00 1.73
2646 2836 0.890542 ATGCAGTGCACGACATGGTT 60.891 50.000 22.44 0.00 43.04 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.