>input_sequence_70163
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-------------------------------------------------ATGAATTCATCCCGCAAGTTCTTCATGGTTG
TTGTCGTCCTTGCCTTGCTCGTCGTGGCTACGGGTGAGAATTTACACTGGATTTACTCATTTCCTTTCTTTTTGACACAC
TGCCC-TTTTTGTTGTCGTTTAACAAATTATTATTGCTAACTAAAACATGGCAGATATGAGCTTTCACTTTTGCTTTACC
AGGCTAGAAAATCACATGAGGCCATCATATATGACAAGGAATATTCGCAAGACATGAATATCAATTGGTACGATATTTTC
ATAAGAAATAAAAGCACAAAAGGGGTGTCTTA--AAATATCTAATACAATATAAGTGGTAATCTAGTGAGACAAAAACTT
ATGTAGATACATCATCATGCGTGATTTGATTTTTTTTTTTTGAAATAACCACATATATTCCATTAGTAGACAAACTTATT
GCAGAGAGTACATATGCGGCCACCACATGAGACATACATAGGTGTCTTACATTTTTGCACTAAAGATCCTCCTACCAGTA
CATATGCGTGATTTGATGTATTTAACATACTTTTCCAATGTGTGGGTGTGTTTGTGTTGTTTAGAGATGGCACCGGCGCA
GGCGGTAGACTGCAGGACAGCGAGCACCCGGTTCAACGGCATATGCATCCTGGACAGCAGTTGCGCCAACATGTGCATCA
CCGAGGGGTTCCTGGCTGGCGGGGACTGTGAAGGCCTCCACCGGCGATGCATGTGCAAAACACCATGCTAG---------
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>chr4D_1_TraesCS4D01G349900
AATGTGTAGAATATGAGTATCATGTTATTTTACCTATTAAATAATTTGAAAATGCTATTTAGGGTGCAACCTTAATCAAT
AGCGCATGATTCATCTTCCTTTCGTACCGACACTGACCCAAATTGCAAATGAACACCTCATCAAAGCCAAATTGGAGACG
AAACAAACCATCGATAACCGTGCATGCACGCCTCGGCAAACCGTTACATGGGAAAGAAAACAGATTTCTCATCCTATGCC
GAGAGAGAGAGAGATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAGCCTCGGCAAGACCTACTG
GGGTCTTGAGTCATGGTTATTGGATTTGGGTCGTGCGGTACTTTCTTCTCCTGTTACAACGCACGGGCTATTTTGCTGTT
TTTTATGTATAAAACAACAAAGTTAACTAAACAAGCCGGCACAACTCTATCGACGCAACCAACAAAGTTACTATCTATCT
ATAAAACAACAAAGTTAACTCGTCACCCTATCGAGGCATCTATGCATGGCAAGGTGATCGTGTCATCCGGATATTGCATG
TAGTTGCAGCTTTTACTAGATCTAATGAGTCTGTCTTAAATGTCAAGGGTTTTATAAATTTTGTAAGTCGTATATTTTTT
TCCAATCAGACTCACATGCCCCCATTCGAGATTTTTGT--TGAGGTTTTTTAAGCACCACATGCAAAACCCCATAGTTTT
CCAACACGCAAAAAA-----AATTGGATAGTAGTCCGAGGAGACCGGTTTGATG--------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGCGTCTAACTTCAGAGTACGACATA
TATAGAACACCTAGGGACAGCGCGACATGTTGCCGCTTATGACTGGCCACTATTTTTAGCCAATTATATACTATAT--GG
ATGTGAGATTATCTTGTGGTTCTCCATCGTGCCATGCAGACATGCTTACCCTTATATAAACTCGCCATAAGGATTTTGAC
GCATGATTGTCTTCTTATCAGAGAAAAGTTTACACATAACTTCCAATCCATGAATTCATCCCGCAAGTTCTTCATGGTTG
TTGTCGTCCTTGCCTTGCTCGTCGTGGCTACGGGTGAGAATTTACACTGGATTTACTCATTTCCTTTCTTTTTGACACAC
TGCCC-TTTTTGTTGTCGTTTAACAAATTATTATTGCTAACTAAAACATGGCAGATATGAGCTTTCACTTTTGCTTTACC
AGGCTAGAAAATCACATGAGGCCATCATATATGACAAGGAATATTCGCAAGACATGAATATCAATTGGTACGATATTTTC
ATAAGAAATAAAAGCACAAAAGGGGTGTCTTA--AAATATCTAATACAATATAAGTGGTAATCTAGTGAGACAAAAACTT
ATGTAGATACATCATCATGCGTGATTTGATTTTTTTTTTTTGAAATAACCACATATATTCCATTAGTAGACAAACTTATT
GCAGAGAGTACATATGCGGCCACCACATGAGACATACATAGGTGTCTTACATTTTTGCACTAAAGATCCTCCTACCAGTA
CATATGCGTGATTTGATGTATTTAACATACTTTTCCAATGTGTGGGTGTGTTTGTGTTGTTTAGAGATGGCACCGGCGCA
GGCGGTAGACTGCAGGACAGCGAGCACCCGGTTCAACGGCATATGCATCCTGGACAGCAGTTGCGCCAACATGTGCATCA
CCGAGGGGTTCCTGGCTGGCGGGGACTGTGAAGGCCTCCACCGGCGATGCATGTGCAAAACACCATGCTAGGCGAAGCAT
ATGCATAGTCTGGACTGCTTCATCAGGAAGTTTTCCCGATTTAGATAAAAACAAGGAAAAAA----------TCTAAAAG
AAAAGAAAATGGAGTTGTGACACATATTGTGTTCTTTTA-TTTTTTTC---CACATGTTCCTTTGGAAAATTGTGGTTGT
GCA-TTTGATGCATTTTTGTTGATCGTACAATCCAGTTTGATGTGTTTTTTTTTTTTTGTAAACTTGAAGTTGGCCATTT
AGTCATTGTGTAAGATTATTTTCCAAGGTTCATTCATTTGTGATCATGCAATGCAGTATTGTACTACTAGTAACCGTAGT
GTTTCTAGTAGCATAAATTTCTTTCTCTAACTTTTGAACGTTGACAGTGAAGACAAATAGATGGATGCAACGATTTTGGT
GGTTGCATGGTCTGAACACGGAGATCTCAAATAAAAATGATATAAGGTTGC-ACGATATATAATATTTCGGCTCCACCAA
AGAA-TCAGTATCTTTTCTCCTTGAAATTTTTGCTAGTGTCCATGAGCCGTGACTAAATTATCGATATGCCAAAACTATC
AACATCATTATTTTGATAAATATAGTTTGTCAAAAAGGGAGTGAAGTTGTTTATTTATGTCTTGTCTCTTGGTATTAATG
ACGCCAGTGATCGGTAGTTTCATAGTTTTGTTATTTGTCGAATGATGGATCAAATGATTATCTCCAAATGACAACTGAGA
ATCATCAGATCAAACTTCAAGATTCATGTAGGTGCTAAGAGGACGAGAAATCAGATCTGACATTAGTAACAACTATCAGT
AGTTGATTGTGAAATCACCATCGATAAGTCAATTGAGCTCTTGTAGACATCGTAATCATGTCTCTCTTTTTTCTTAGCCT
TGATTTGCCTCATGCCCTCATTGATACTTTAGCTAAACCATGTCGTGCACTGCATGTCGAGGTGGCCAAAGACGTACATG
TTCTACTCCAATTGGTACTTGTCACCATGTTCAAGGCATCCATGCATG
>chr5A_539
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----------------------------------------------------------CGTGTCATCCGGACATTGCATG
TAGTTGCAGCTTTTACTAGATCTAATGAGTCTGTCCTAAATGTCAGGGGTTTTATAAATTTTGTAAGTTGTATATTTTTT
CCCAATCAGACTCACATGCACCCATTCGAGTATTTTGTTATGAGGTTTTTTAAGCACCGCATGC-AAACCCCATACTTTT
CCAACACGCAAAAAA-----AAAAGAATAGTAGTCCGAGAAGACCGGTTTGACAAGCGGAACTACTGAGCAGCCGACACC
CACTGGCCGAACATTGCACGATGCTTTGATCCAGCGGTCGGCCTCCTCTTTGTGACATGCATGTACGATCAGATCAGTAG
CATCGTCCAGACATCGGCTGCACACCGTCGTGTGTATAGCAGCGCTCTTTGACAAGAGTCTAACTTCGGAGTATGTCATA
TATAGAATGCCTAGGGACAGCGCAACATGTTGCCGCTTATGATTGGCCACTATTTTTAGCCAATTATATACTATATATGG
ATGTGAGACGATCTTGTGGTTCTCCATCGTGCCATCCAGACATGCTTACCCTTATATAAACTCGACATAAGGATTTTGAC
GCATGATTGTCTTCCTACCAAAGAAAAGTTTACACATAACTTGCAATCCATGAATTCATCCCACAAGTTCTTCATGGTTG
TTGCCGTCCTTGCCTTGCTCGTCGTGGCTACGGGTGAGAATTTACACTGGATTTACTCCTTTCCTTTCTTTTTGATACAC
TGCCC-TTTATGTTGTCCTATAATAAATTATTATTGCTAACTAAAACATGGCAGATGTGAGCTTTCACTTTTGCTTTACC
AGGCTAGAAAATCACATGAGCCCATCATATATGACAAGCAATATTCACAAGACATGAATATCAATTGGTACCATATTTTT
ATAAGAAATAAAAGCACAAAAGGGGTGTCTTATAAAATATCTAGTACAATATAAGTGGTAATCTAATGAGAGAAAAACTT
ATGCAGATACATCATCATGTGTGATTCAC---------------------------------------------------
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--------TGATTTGATGTATTTAACGTACTTTTCCAATGTGTGGGTGTGTTTGTGTTGTTCAGAGGTGGCACCGGCGCA
GGCGGTAGACTGCAGGACAGCGAGCACCCGGTTCAACGGCATATGCATCCTGGACACCAGTTGCGCCAACATGTGCATCA
CCGAGGGGTTCCTGGCTGGCGGGGAGTGTGAAGGCCTCCACAGGCGCTGCATGTGCAGAACACCATGCTAGGCAAAGCAT
ATGCATAGTCTGGACTGCTTCATCAGGAAGTTTTCCCGATTTAGATAAAAACAAGGAAAATATATATTTTTTTCTAAAAG
AAAAGAAAATGGAGTTGTAACACATACTGTGTTCTTTTAGTTTTTTTC---CACATGTTCATCTGGAAACTTGTGGCTGT
GCAGTTTGATGCATTTGTGTTGATCGTGCAATCCAGTTTGATGTGTTTTTG-----TTGTAAACTTGAAGTTGACCATTT
AGTCATTGTGTAAGATTATTTTCCAAGATTCATTCATTTGTGATCATGCAATGCAGTATTGTAGTACTAGTAACCGCAGT
GTTTCTAGTAGCATAAATTTATTTCTCTAACTTCT-AACGTTGACAGTGAAGACAAATAGAAGGATGGAATGATTTTGGT
GGTTGCATGATCTGAACACAGAGATCTCAAATGAAAATGATATAAGGTTGAAATGATATATAATATTTCAGCTCCACCAA
AGAAATCAATATCGTTTCTCCTTGAAATTTTTGCTAGTGTCCGTGAGCCGTGACTAAATTATCGATATGCCAAAATTATC
AACAACGTTATTTTGATAAATATTGTTTGTTAAATAAGGAGTGAAGTTGTTTATTCGTGTCTTGACTCTTGGTATTAATG
ACAGCAGTGATCGGTATTTTCGCAGTTTTGTTATTTGTCGAACGACGGAACAAATGATTATCTCCAAATGACCACTGAGA
ATAATCAGATCAAACTT-AAGATTCATGTAGATGCTAAGAGGACGAGAAATCTGATCTGACATTAGTAACAACTATCGGT
AGTTCATTGTGAAATCACCATCAGTAAGTCAATTGAGCCCTTGTAGACATCGTAATCATGTCTTG-TTTTTTCTTAGCCT
TGACTCGCCTCATGCCCTCATTGATACTTTAGCTAGACCATGTCGTGCACTGCACGGCGAGGTGGCCAAAGACGTACATG
TTCTACTCCAGTTGGTACTCGTCACCATGTTCAAGGCATTCATGCATG
>chr4B_681
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------------------------------------------AGGTTTTTTAAGCACCGCATGC-AAAACTCATTATTTT
CCAACACGCAAAAAAGAAAAAATTGGATAGTAGTCCGAGAAGAGCGGTTTGACG--------------------------
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------------------------------------------------------AGAGCCTAACTTCGGAGTACGACATA
TATAGAACACCTAGGGACAGCCCAACATGTTGCTGCTTATGACTGGCCACTATTTTTAGCCAATTATATACTA--TATGG
ATGTGAGACGATCTTGTGGTTCTCCATCGTGCCATGCAGACATGCTTACCCTTATATAAACTCGCCATAAGGATTTTGGT
GCATGATTGTCCTCTTATCAGAGAGAAGTTCACACATAACTTGCAATCCATGAATTCATCCCGCAAGTTCTTCATGGTTG
TTGCCGTCCTTGCCTTGCTCGTCGTGGCTACAGGTGAGAATTTACACTGGATTTACTCCTTTCCTTTCTTTTTGATACAC
TGCGCTTTTTGTTTATCGTTTAACAAATTATAATTGCTAACTAAAATATGGCAGATATGAGCTTTCACTTTTGCTTTACT
AGGCTAGAAAATCACATGAGCCCATCATATATGACAAGGAATATTCGCAAGACATGAATATCAATTGGTACGATATTTTC
ATAAGAAATATAAGCACAAAAGGGGTGTCTTA--AAATATTTAATACAATATAAGTAGTAATCCAGTGAGACAAAAACTT
ACGTAGATACATCATCATGCGTGATTTGACTCTTTTTTTTTTGAAATA--------------------------------
------------------------ACATGAGACATACGTAGGTGTCTTACATTTTTGCACTAAAGATCTTCCTACCGGTA
CATATGCGTGATTTGATGTATTTAACATACTTTTCCAATGTGTGGGTGTTTTTGTGTTGTTCAGTGGTGGCGCCGGCGCA
GGCGGTAGACTGCAGGACAGCGAGCACCCGGTTCAACGGCATATGCATCCTGGACAGCAGTTGCGCCAACATGTGCATCA
CCGAGGGGTTCCTGGCTGGCGGGGAGTGTGAAGGTCTCCACCGACGCTGCATGTGCAAAACACCATGCTAGGCGAAGCAT
ATGCATAGTCTGGACTGCTTCATCAGGAAGTTTTTCCGATTTAGATAAAAACAAGGAAAAAGATT-TTTTTTTCTAAAAG
AAAAGAAAATGGAGTTGTAACACATACTGTGTTCTTTTA-GTTTTTTTTTTCACATGTTCCTTTGGGAGATTGTGGTTGT
GCA-TTTGATGCATTTTTGTTGATCGTACAATCCAGTTTGATGTGTTTTTG-----TTGTAAACTTGAAGTTGGCCATTT
TGTCATTGTGTAAGATTATTTTCCAAGATTCATTCATTTGTGATCATGCAATGCAGTATTGTACTACCAGTAACCGTAAT
GTTTCTAGTAGCATAAATTTGTTTCTCTAACTTC-GAACGTTGACAGTGAAGACAAATAGAAGGATGCAACGATTTTGGT
GGTTGCATGATCAGAACACGGAGATCTCAAATGAAAATGATATAAGGTTGAAACGATATATAACATTTCAGCTCCACCAA
AGAAATCAATATCGTTTCTACTTGAAATTTTTGCTAGTGTCCATGAGCCGTGACTAAATTATCGATATGCTAAAACCATC
GACAACGTTATTTTGATAAATATTGTTTGTCAAAT-AGGAGTGAAGTTGTTTATTTGTGTCTTGTCTCTTGGTATTAATG
ACGGCAGTGATCG----TTTCACAGTTTTGTTATTTGTTGAACAATGGAACAAATGATTATCTCCAAATGACCACTAAGA
ATCATCAGATCAAACTTCAAGATTCATGTAGATGCTAAGAGGAAGAGAAATATGATGTGACATTAGTAACAACTATCAGT
AGTTCATTGTGAAATCACCATCATTAAGTCAATTGAGCCCTTGTAGACATCGTGATCATGTCTTG-TTTTTTCTTAGCCT
TGACTCGCCACATGCCCTCATTGGTACTTTAGCTAGACCATGTCGTGCACTGCATGTCGAGGTGGCCAAAGACGTACATG
TTCTACTCCCATTGGTACTCGTCACCATGTTCAAGGCATCCATGCATG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--------
-----------------------------------S---------S----------------------S-----------
S------------------S----------SS--------------------------S-----S----------S----
---------------------------------------S------------S---------------------------
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--------------------------------------------------------S----------S------------
-----------------------S--------------------------------------------------------
--------SS----------------------------------------------------------------------
------------------------------------------S-------------------------------------
---S------------------------------------------------------S----------------S----
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--------------------S-----------------------------------------------------------
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-----------------------------S-S---------SS--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-------------S------------------------------S-------S---
-------------------------------------------------------------S----S-------------
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-------------------------S--------------------S---------------------------------
--------------------------------------------------------------------------------
------------------S-------S-----------------------------------------------------
--------------------------------------------------SSSSSS------------------------
---------------------------S----------------------------------------------------
--------------------S------------S---------------------------S------------------
---------S----------------------S-----------------S------------------S----------
--------S----S------------------------------------------------------------------
----S-S----------------S----------S-S-------------------S-----------------------
---S------------S-----S-------------------S------S----------------------S-------
-------------------------------S--------------------S---------------------------
----S-----------------SS--------------S------------------------SSS--------------
---S-S-----------------------------S--------------------------------------------
-------------------S----------------------------
>forward_122
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----------------------CGTACCGACACTGACCCAAA--------------------------------------
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>reverse_1606
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-----GAGTACATATGCGGCCACCA-------------------------------------------------------
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>forward_363
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-----------------------ATTTGGGTCGTGCGGTACTT-------------------------------------
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>reverse_1617
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----------------CGGCCACCACATGAGACATA--------------------------------------------
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>forward_391
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---------------------------------------------------TGTTACAACGCACGGGCTAT---------
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>reverse_1618
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-----------------GGCCACCACATGAGACATACA------------------------------------------
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>forward_520
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--------------------CGTCACCCTATCGAGGCATC----------------------------------------
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>reverse_2302
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-------------------------------------------------------------TGGATGCAACGATTTTGGT
GG------------------------------------------------------------------------------
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------------------------------------------------
