Multiple sequence alignment - TraesCS4D01G349000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G349000 chr4D 100.000 4186 0 0 1 4186 502407400 502411585 0.000000e+00 7731.0
1 TraesCS4D01G349000 chr4D 84.746 177 12 11 1390 1553 234423926 234423752 3.350000e-36 163.0
2 TraesCS4D01G349000 chr4D 98.507 67 1 0 1401 1467 348430475 348430409 7.350000e-23 119.0
3 TraesCS4D01G349000 chr4B 87.216 2417 178 60 877 3189 646655093 646657482 0.000000e+00 2630.0
4 TraesCS4D01G349000 chr4B 77.969 640 86 23 2105 2730 50245072 50245670 2.390000e-92 350.0
5 TraesCS4D01G349000 chr4B 80.147 272 34 14 2943 3203 50251108 50251370 7.150000e-43 185.0
6 TraesCS4D01G349000 chr4B 95.588 68 2 1 804 870 646654885 646654952 1.590000e-19 108.0
7 TraesCS4D01G349000 chr5A 91.744 1514 80 27 2477 3966 685535765 685537257 0.000000e+00 2061.0
8 TraesCS4D01G349000 chr5A 86.962 1741 119 38 804 2472 685533974 685535678 0.000000e+00 1858.0
9 TraesCS4D01G349000 chr5A 95.389 694 32 0 1 694 315274810 315275503 0.000000e+00 1105.0
10 TraesCS4D01G349000 chr5A 95.252 695 32 1 1 694 184617174 184617868 0.000000e+00 1099.0
11 TraesCS4D01G349000 chr5A 90.909 44 3 1 692 735 685533889 685533931 1.630000e-04 58.4
12 TraesCS4D01G349000 chr7D 97.691 693 15 1 3 694 529486245 529486937 0.000000e+00 1190.0
13 TraesCS4D01G349000 chr7D 98.507 67 1 0 1401 1467 232372625 232372559 7.350000e-23 119.0
14 TraesCS4D01G349000 chr6D 97.543 692 17 0 3 694 452320839 452320148 0.000000e+00 1184.0
15 TraesCS4D01G349000 chr6D 97.110 692 20 0 3 694 317515542 317516233 0.000000e+00 1168.0
16 TraesCS4D01G349000 chr7B 93.642 692 44 0 3 694 41190457 41189766 0.000000e+00 1035.0
17 TraesCS4D01G349000 chr6B 92.374 695 48 4 1 694 463445720 463446410 0.000000e+00 985.0
18 TraesCS4D01G349000 chr3B 91.908 692 53 2 3 694 774156856 774156168 0.000000e+00 965.0
19 TraesCS4D01G349000 chr3B 82.561 453 58 13 2767 3203 144080676 144080229 3.050000e-101 379.0
20 TraesCS4D01G349000 chr1A 91.449 690 58 1 3 691 97960304 97960993 0.000000e+00 946.0
21 TraesCS4D01G349000 chr3D 82.599 454 56 16 2767 3203 93832251 93831804 3.050000e-101 379.0
22 TraesCS4D01G349000 chr2D 97.143 70 2 0 1398 1467 600611182 600611251 7.350000e-23 119.0
23 TraesCS4D01G349000 chr2D 97.101 69 2 0 1398 1466 477428661 477428729 2.640000e-22 117.0
24 TraesCS4D01G349000 chr2D 97.015 67 2 0 1401 1467 614352074 614352008 3.420000e-21 113.0
25 TraesCS4D01G349000 chr1D 97.143 70 2 0 1398 1467 16732946 16733015 7.350000e-23 119.0
26 TraesCS4D01G349000 chr2B 75.664 226 35 16 3970 4186 472899944 472899730 1.240000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G349000 chr4D 502407400 502411585 4185 False 7731.0 7731 100.000000 1 4186 1 chr4D.!!$F1 4185
1 TraesCS4D01G349000 chr4B 646654885 646657482 2597 False 1369.0 2630 91.402000 804 3189 2 chr4B.!!$F3 2385
2 TraesCS4D01G349000 chr4B 50245072 50245670 598 False 350.0 350 77.969000 2105 2730 1 chr4B.!!$F1 625
3 TraesCS4D01G349000 chr5A 685533889 685537257 3368 False 1325.8 2061 89.871667 692 3966 3 chr5A.!!$F3 3274
4 TraesCS4D01G349000 chr5A 315274810 315275503 693 False 1105.0 1105 95.389000 1 694 1 chr5A.!!$F2 693
5 TraesCS4D01G349000 chr5A 184617174 184617868 694 False 1099.0 1099 95.252000 1 694 1 chr5A.!!$F1 693
6 TraesCS4D01G349000 chr7D 529486245 529486937 692 False 1190.0 1190 97.691000 3 694 1 chr7D.!!$F1 691
7 TraesCS4D01G349000 chr6D 452320148 452320839 691 True 1184.0 1184 97.543000 3 694 1 chr6D.!!$R1 691
8 TraesCS4D01G349000 chr6D 317515542 317516233 691 False 1168.0 1168 97.110000 3 694 1 chr6D.!!$F1 691
9 TraesCS4D01G349000 chr7B 41189766 41190457 691 True 1035.0 1035 93.642000 3 694 1 chr7B.!!$R1 691
10 TraesCS4D01G349000 chr6B 463445720 463446410 690 False 985.0 985 92.374000 1 694 1 chr6B.!!$F1 693
11 TraesCS4D01G349000 chr3B 774156168 774156856 688 True 965.0 965 91.908000 3 694 1 chr3B.!!$R2 691
12 TraesCS4D01G349000 chr1A 97960304 97960993 689 False 946.0 946 91.449000 3 691 1 chr1A.!!$F1 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 533 0.459585 GAGGTCCGCAAGCGTAATGA 60.460 55.0 13.80 0.32 37.81 2.57 F
1541 1744 0.035534 TTCAGCTAAGCGGCATGGAA 60.036 50.0 1.45 0.00 34.17 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 2559 0.482446 AGGCAACCCTGGTCATGAAA 59.518 50.0 0.00 0.00 40.94 2.69 R
3340 3726 0.183014 TCTTAGGTCTCGGATCCGCT 59.817 55.0 29.62 21.45 39.59 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.283529 GGTCGTCCAGCTTCTCCCA 61.284 63.158 0.00 0.00 0.00 4.37
140 141 4.589675 GGTTTGACCGGTGGGCCA 62.590 66.667 14.63 0.00 36.48 5.36
231 233 3.712218 GAGAGGGCCCTTATTGACTTAGT 59.288 47.826 29.39 0.00 0.00 2.24
298 300 4.495422 CTTGGCGTGAGTTACTAGATTGT 58.505 43.478 0.00 0.00 0.00 2.71
530 533 0.459585 GAGGTCCGCAAGCGTAATGA 60.460 55.000 13.80 0.32 37.81 2.57
694 697 0.960286 GTATACGGAGCTCCAGTCCC 59.040 60.000 31.67 12.76 35.14 4.46
695 698 0.851469 TATACGGAGCTCCAGTCCCT 59.149 55.000 31.67 18.43 35.14 4.20
696 699 0.757188 ATACGGAGCTCCAGTCCCTG 60.757 60.000 31.67 16.03 35.14 4.45
697 700 4.154347 CGGAGCTCCAGTCCCTGC 62.154 72.222 31.67 2.06 35.14 4.85
728 731 4.825422 TGCTCTCCTCATCTTTTAGTGTG 58.175 43.478 0.00 0.00 0.00 3.82
730 733 4.629200 GCTCTCCTCATCTTTTAGTGTGTG 59.371 45.833 0.00 0.00 0.00 3.82
734 737 7.054124 TCTCCTCATCTTTTAGTGTGTGTTTT 58.946 34.615 0.00 0.00 0.00 2.43
778 781 9.496873 TCTTTTTGAAATAGATACGGTCTTTCA 57.503 29.630 0.00 1.56 38.42 2.69
779 782 9.760660 CTTTTTGAAATAGATACGGTCTTTCAG 57.239 33.333 0.00 0.00 38.42 3.02
780 783 8.842358 TTTTGAAATAGATACGGTCTTTCAGT 57.158 30.769 0.00 0.00 38.42 3.41
781 784 7.827819 TTGAAATAGATACGGTCTTTCAGTG 57.172 36.000 0.00 0.00 38.42 3.66
782 785 6.931838 TGAAATAGATACGGTCTTTCAGTGT 58.068 36.000 0.00 0.00 38.42 3.55
783 786 7.383687 TGAAATAGATACGGTCTTTCAGTGTT 58.616 34.615 0.00 0.00 38.42 3.32
784 787 7.876068 TGAAATAGATACGGTCTTTCAGTGTTT 59.124 33.333 0.00 0.00 38.42 2.83
785 788 7.596749 AATAGATACGGTCTTTCAGTGTTTG 57.403 36.000 0.00 0.00 38.42 2.93
786 789 4.957296 AGATACGGTCTTTCAGTGTTTGT 58.043 39.130 0.00 0.00 31.47 2.83
787 790 5.365619 AGATACGGTCTTTCAGTGTTTGTT 58.634 37.500 0.00 0.00 31.47 2.83
788 791 6.518493 AGATACGGTCTTTCAGTGTTTGTTA 58.482 36.000 0.00 0.00 31.47 2.41
789 792 6.645415 AGATACGGTCTTTCAGTGTTTGTTAG 59.355 38.462 0.00 0.00 31.47 2.34
790 793 4.510571 ACGGTCTTTCAGTGTTTGTTAGT 58.489 39.130 0.00 0.00 0.00 2.24
791 794 5.663456 ACGGTCTTTCAGTGTTTGTTAGTA 58.337 37.500 0.00 0.00 0.00 1.82
792 795 5.751990 ACGGTCTTTCAGTGTTTGTTAGTAG 59.248 40.000 0.00 0.00 0.00 2.57
793 796 5.333111 CGGTCTTTCAGTGTTTGTTAGTAGC 60.333 44.000 0.00 0.00 0.00 3.58
794 797 5.526111 GGTCTTTCAGTGTTTGTTAGTAGCA 59.474 40.000 0.00 0.00 0.00 3.49
795 798 6.292919 GGTCTTTCAGTGTTTGTTAGTAGCAG 60.293 42.308 0.00 0.00 0.00 4.24
796 799 6.258068 GTCTTTCAGTGTTTGTTAGTAGCAGT 59.742 38.462 0.00 0.00 0.00 4.40
797 800 6.821665 TCTTTCAGTGTTTGTTAGTAGCAGTT 59.178 34.615 0.00 0.00 0.00 3.16
798 801 6.995511 TTCAGTGTTTGTTAGTAGCAGTTT 57.004 33.333 0.00 0.00 0.00 2.66
799 802 6.995511 TCAGTGTTTGTTAGTAGCAGTTTT 57.004 33.333 0.00 0.00 0.00 2.43
800 803 8.495361 TTCAGTGTTTGTTAGTAGCAGTTTTA 57.505 30.769 0.00 0.00 0.00 1.52
801 804 8.671384 TCAGTGTTTGTTAGTAGCAGTTTTAT 57.329 30.769 0.00 0.00 0.00 1.40
802 805 9.116067 TCAGTGTTTGTTAGTAGCAGTTTTATT 57.884 29.630 0.00 0.00 0.00 1.40
823 826 4.297299 TCAGAACTTTGCTTGCTTTCAG 57.703 40.909 0.00 0.00 0.00 3.02
873 876 9.911788 TCAGATCAATTAAGATTTAAAGAGGCT 57.088 29.630 0.00 0.00 0.00 4.58
942 1089 2.125912 CTCGTCCCAAGCCACTCG 60.126 66.667 0.00 0.00 0.00 4.18
1072 1234 2.429930 CGACCCCCTGCAAAGACA 59.570 61.111 0.00 0.00 0.00 3.41
1081 1243 4.430423 GCAAAGACAGCGTCGGCG 62.430 66.667 4.29 4.29 46.35 6.46
1235 1403 1.740025 GCAGAGCACAATCAAGGTACC 59.260 52.381 2.73 2.73 0.00 3.34
1236 1404 2.875672 GCAGAGCACAATCAAGGTACCA 60.876 50.000 15.94 0.00 0.00 3.25
1256 1424 2.356278 GCCACATGCAGAAGGGGA 59.644 61.111 8.91 0.00 40.77 4.81
1258 1426 1.687612 CCACATGCAGAAGGGGAGT 59.312 57.895 0.00 0.00 0.00 3.85
1265 1433 3.003763 AGAAGGGGAGTCGTGGCC 61.004 66.667 0.00 0.00 0.00 5.36
1276 1444 4.389576 CGTGGCCGCTTGCTTGTC 62.390 66.667 15.69 0.00 40.92 3.18
1468 1645 2.125753 CAGGAGAGGTGCGTGCTC 60.126 66.667 0.00 0.00 0.00 4.26
1469 1646 2.283532 AGGAGAGGTGCGTGCTCT 60.284 61.111 0.00 0.00 0.00 4.09
1470 1647 2.125753 GGAGAGGTGCGTGCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
1471 1648 2.813042 GAGAGGTGCGTGCTCTGC 60.813 66.667 0.00 0.00 0.00 4.26
1472 1649 4.385405 AGAGGTGCGTGCTCTGCC 62.385 66.667 0.00 0.00 0.00 4.85
1505 1708 0.380378 GCTCTGTTGCGGTTTGTGAA 59.620 50.000 0.00 0.00 0.00 3.18
1506 1709 1.597937 GCTCTGTTGCGGTTTGTGAAG 60.598 52.381 0.00 0.00 0.00 3.02
1507 1710 1.670811 CTCTGTTGCGGTTTGTGAAGT 59.329 47.619 0.00 0.00 0.00 3.01
1508 1711 1.400142 TCTGTTGCGGTTTGTGAAGTG 59.600 47.619 0.00 0.00 0.00 3.16
1509 1712 0.179150 TGTTGCGGTTTGTGAAGTGC 60.179 50.000 0.00 0.00 0.00 4.40
1511 1714 0.100325 TTGCGGTTTGTGAAGTGCTG 59.900 50.000 0.00 0.00 0.00 4.41
1527 1730 1.405105 TGCTGGTGTTGTTTCTTCAGC 59.595 47.619 0.00 0.00 45.28 4.26
1532 1735 3.315191 TGGTGTTGTTTCTTCAGCTAAGC 59.685 43.478 0.00 0.00 34.97 3.09
1541 1744 0.035534 TTCAGCTAAGCGGCATGGAA 60.036 50.000 1.45 0.00 34.17 3.53
1612 1815 2.358898 CCATAGCACAGGTACCAATTGC 59.641 50.000 15.94 18.17 0.00 3.56
1615 1818 0.527565 GCACAGGTACCAATTGCCAG 59.472 55.000 15.94 0.00 0.00 4.85
1628 1831 2.042686 TTGCCAGAATCTTCATCCGG 57.957 50.000 0.00 0.00 0.00 5.14
1629 1832 0.911769 TGCCAGAATCTTCATCCGGT 59.088 50.000 0.00 0.00 0.00 5.28
1631 1834 1.959042 CCAGAATCTTCATCCGGTGG 58.041 55.000 0.00 0.00 0.00 4.61
1633 1836 2.092968 CCAGAATCTTCATCCGGTGGAA 60.093 50.000 0.00 5.84 34.34 3.53
1634 1837 3.434167 CCAGAATCTTCATCCGGTGGAAT 60.434 47.826 0.00 0.00 34.34 3.01
1635 1838 3.562973 CAGAATCTTCATCCGGTGGAATG 59.437 47.826 0.00 0.00 34.34 2.67
1636 1839 3.455910 AGAATCTTCATCCGGTGGAATGA 59.544 43.478 0.00 0.00 34.34 2.57
1637 1840 4.103785 AGAATCTTCATCCGGTGGAATGAT 59.896 41.667 0.00 8.65 34.34 2.45
1638 1841 3.198409 TCTTCATCCGGTGGAATGATG 57.802 47.619 0.00 5.90 37.75 3.07
1639 1842 2.771372 TCTTCATCCGGTGGAATGATGA 59.229 45.455 12.68 12.68 42.20 2.92
1646 1874 0.740149 GGTGGAATGATGATTGCGCA 59.260 50.000 5.66 5.66 41.01 6.09
1648 1876 2.390938 GTGGAATGATGATTGCGCATG 58.609 47.619 12.75 0.00 39.51 4.06
1754 1982 4.002982 TGACAATGTCAAGCAGGTACATC 58.997 43.478 14.37 0.00 39.78 3.06
1833 2068 0.606604 TCAGGGAGTAGCAAACCGAC 59.393 55.000 0.00 0.00 0.00 4.79
1834 2069 0.608640 CAGGGAGTAGCAAACCGACT 59.391 55.000 0.00 0.00 31.61 4.18
1841 2079 5.163478 GGGAGTAGCAAACCGACTCTAATAA 60.163 44.000 0.00 0.00 43.33 1.40
1874 2112 5.633830 AAGCATTTCAGAAACATGATCGT 57.366 34.783 0.00 0.00 0.00 3.73
1875 2113 6.741992 AAGCATTTCAGAAACATGATCGTA 57.258 33.333 0.00 0.00 0.00 3.43
1876 2114 6.741992 AGCATTTCAGAAACATGATCGTAA 57.258 33.333 0.00 0.00 0.00 3.18
1877 2115 7.325660 AGCATTTCAGAAACATGATCGTAAT 57.674 32.000 0.00 0.00 0.00 1.89
1878 2116 7.191551 AGCATTTCAGAAACATGATCGTAATG 58.808 34.615 0.00 10.41 0.00 1.90
1879 2117 7.066163 AGCATTTCAGAAACATGATCGTAATGA 59.934 33.333 0.00 0.00 0.00 2.57
1880 2118 7.375280 GCATTTCAGAAACATGATCGTAATGAG 59.625 37.037 0.00 0.00 0.00 2.90
1881 2119 7.905604 TTTCAGAAACATGATCGTAATGAGT 57.094 32.000 0.00 0.00 0.00 3.41
1882 2120 8.996024 TTTCAGAAACATGATCGTAATGAGTA 57.004 30.769 0.00 0.00 0.00 2.59
1883 2121 9.599866 TTTCAGAAACATGATCGTAATGAGTAT 57.400 29.630 0.00 0.00 0.00 2.12
1955 2203 3.087031 ACTCCAAGGAAGATGCACAATG 58.913 45.455 0.00 0.00 0.00 2.82
2048 2301 3.894427 TCTTAGATGGATGCCTCAGACTC 59.106 47.826 0.00 0.00 0.00 3.36
2233 2491 4.202223 GCAAGCATGGTAAGGCTACTACTA 60.202 45.833 0.00 0.00 44.17 1.82
2236 2494 4.585162 AGCATGGTAAGGCTACTACTACTG 59.415 45.833 0.00 0.00 42.84 2.74
2291 2554 9.791820 CAGAATATTCAAACATGCAATCTTACA 57.208 29.630 17.56 0.00 0.00 2.41
2314 2577 1.478105 GATTTCATGACCAGGGTTGCC 59.522 52.381 0.00 0.00 0.00 4.52
2500 2851 3.328237 AAGGAAAACGTTTACAGTGCG 57.672 42.857 15.03 0.00 0.00 5.34
2505 2856 0.515564 AACGTTTACAGTGCGCATCC 59.484 50.000 15.91 0.17 0.00 3.51
2506 2857 0.601576 ACGTTTACAGTGCGCATCCA 60.602 50.000 15.91 0.00 0.00 3.41
2507 2858 0.726827 CGTTTACAGTGCGCATCCAT 59.273 50.000 15.91 2.04 0.00 3.41
2508 2859 1.267532 CGTTTACAGTGCGCATCCATC 60.268 52.381 15.91 0.00 0.00 3.51
2509 2860 1.737236 GTTTACAGTGCGCATCCATCA 59.263 47.619 15.91 0.00 0.00 3.07
2711 3067 6.252036 CGCAGCACAAATATTCAGAAATTC 57.748 37.500 0.00 0.00 0.00 2.17
2734 3090 4.989279 ACTTTCAGTGTGCATTTGAGTT 57.011 36.364 0.00 0.00 0.00 3.01
2803 3181 3.689649 GTGTTCTTCACAAACTGACTGGT 59.310 43.478 0.00 0.00 45.51 4.00
2819 3197 3.626930 ACTGGTTAGTGTTGAAAAGGCA 58.373 40.909 0.00 0.00 35.34 4.75
2882 3260 2.335712 GGTTCTTCCAGGGCTTGCG 61.336 63.158 0.00 0.00 35.97 4.85
2930 3308 1.409427 CCCGGAGAGGTACTTAAGCTG 59.591 57.143 0.73 0.00 41.55 4.24
2971 3349 3.897239 ACTTTGGATGAACTGACCACAA 58.103 40.909 0.00 0.00 33.20 3.33
3017 3395 4.696877 CCTTGAAGCATGATGTTACAGACA 59.303 41.667 0.00 0.00 43.71 3.41
3137 3515 8.446273 ACAATGTCTTATTCACTGAAAAGATCG 58.554 33.333 14.31 9.12 31.16 3.69
3197 3583 8.558973 AGAAGTTCTTGTAGGAAATGATCAAG 57.441 34.615 0.00 0.00 37.44 3.02
3218 3604 7.558604 TCAAGTCACATTCACATATCATGAGA 58.441 34.615 0.09 0.00 0.00 3.27
3224 3610 8.917088 TCACATTCACATATCATGAGAACTAGA 58.083 33.333 0.09 0.00 41.43 2.43
3340 3726 3.734463 TCAGATAAGTGCCAACGACAAA 58.266 40.909 0.00 0.00 0.00 2.83
3419 3806 6.867816 GCATAAGATGACACTTCTGATAGAGG 59.132 42.308 0.00 0.00 0.00 3.69
3430 3817 7.068103 ACACTTCTGATAGAGGTCTAGACAATG 59.932 40.741 23.91 2.65 31.70 2.82
3449 3836 1.271217 TGAGCAAGCTGATGACAAGCT 60.271 47.619 0.00 0.00 41.08 3.74
3457 3844 3.008330 GCTGATGACAAGCTCTCATGTT 58.992 45.455 10.79 0.00 0.00 2.71
3500 3887 7.674471 ATACTGTTAGAGGCTTTTTCAGAAC 57.326 36.000 13.16 0.02 0.00 3.01
3526 3913 9.958234 CCATACTCATAGAGATAAATGATACCG 57.042 37.037 0.31 0.00 33.32 4.02
3654 4042 3.739519 GCTAGACAGAAATCACTGCCGAT 60.740 47.826 0.00 0.00 41.06 4.18
3681 4069 4.156556 GCATTAAGAAATCACACAGGAGCA 59.843 41.667 0.00 0.00 0.00 4.26
3713 4101 8.234546 ACTACAAACATCGGTTCAAATATTCAC 58.765 33.333 0.00 0.00 35.82 3.18
3727 4115 5.648178 AATATTCACAGCAGCATCAACAA 57.352 34.783 0.00 0.00 0.00 2.83
3765 4153 0.250209 CGCAGATGAGAATCCCAGGG 60.250 60.000 0.00 0.00 0.00 4.45
3792 4180 6.934048 TCCATGCACAAATTCGACATATTA 57.066 33.333 0.00 0.00 0.00 0.98
3833 4221 1.945394 GCCATACAACCTCTCAGCATG 59.055 52.381 0.00 0.00 37.54 4.06
3846 4234 5.489249 CTCTCAGCATGGTATATTCAGCAT 58.511 41.667 0.00 0.00 37.11 3.79
3847 4235 6.351626 CCTCTCAGCATGGTATATTCAGCATA 60.352 42.308 0.00 0.00 34.96 3.14
3848 4236 7.191593 TCTCAGCATGGTATATTCAGCATAT 57.808 36.000 0.00 0.00 34.96 1.78
3849 4237 8.310122 TCTCAGCATGGTATATTCAGCATATA 57.690 34.615 0.00 0.00 34.96 0.86
3850 4238 8.931568 TCTCAGCATGGTATATTCAGCATATAT 58.068 33.333 0.00 0.00 34.96 0.86
3911 4300 1.059657 CACAAAAGAATGTCGCGGCG 61.060 55.000 17.70 17.70 0.00 6.46
3931 4320 3.563808 GCGGCATAACATGGTTCATCTTA 59.436 43.478 0.00 0.00 0.00 2.10
3948 4337 9.827411 GTTCATCTTAAACCATCTAGTTTTCAC 57.173 33.333 0.00 0.00 40.38 3.18
3956 4345 4.282703 ACCATCTAGTTTTCACGGTACACT 59.717 41.667 0.00 0.00 0.00 3.55
3957 4346 5.221581 ACCATCTAGTTTTCACGGTACACTT 60.222 40.000 0.00 0.00 0.00 3.16
3966 4355 6.715344 TTTCACGGTACACTTCAATCATAC 57.285 37.500 0.00 0.00 0.00 2.39
3967 4356 5.394224 TCACGGTACACTTCAATCATACA 57.606 39.130 0.00 0.00 0.00 2.29
3968 4357 5.407502 TCACGGTACACTTCAATCATACAG 58.592 41.667 0.00 0.00 0.00 2.74
3969 4358 5.184287 TCACGGTACACTTCAATCATACAGA 59.816 40.000 0.00 0.00 0.00 3.41
3970 4359 5.867174 CACGGTACACTTCAATCATACAGAA 59.133 40.000 0.00 0.00 0.00 3.02
3971 4360 6.367695 CACGGTACACTTCAATCATACAGAAA 59.632 38.462 0.00 0.00 0.00 2.52
3972 4361 7.064609 CACGGTACACTTCAATCATACAGAAAT 59.935 37.037 0.00 0.00 0.00 2.17
3973 4362 8.255206 ACGGTACACTTCAATCATACAGAAATA 58.745 33.333 0.00 0.00 0.00 1.40
3974 4363 9.093970 CGGTACACTTCAATCATACAGAAATAA 57.906 33.333 0.00 0.00 0.00 1.40
3977 4366 8.862325 ACACTTCAATCATACAGAAATAACCA 57.138 30.769 0.00 0.00 0.00 3.67
3978 4367 9.295825 ACACTTCAATCATACAGAAATAACCAA 57.704 29.630 0.00 0.00 0.00 3.67
3979 4368 9.559958 CACTTCAATCATACAGAAATAACCAAC 57.440 33.333 0.00 0.00 0.00 3.77
3980 4369 9.520515 ACTTCAATCATACAGAAATAACCAACT 57.479 29.630 0.00 0.00 0.00 3.16
3986 4375 9.784531 ATCATACAGAAATAACCAACTATCCTG 57.215 33.333 0.00 0.00 0.00 3.86
3987 4376 8.768397 TCATACAGAAATAACCAACTATCCTGT 58.232 33.333 0.00 0.00 36.48 4.00
3988 4377 9.396022 CATACAGAAATAACCAACTATCCTGTT 57.604 33.333 0.00 0.00 34.63 3.16
3989 4378 9.975218 ATACAGAAATAACCAACTATCCTGTTT 57.025 29.630 0.00 0.00 34.63 2.83
3990 4379 8.110860 ACAGAAATAACCAACTATCCTGTTTG 57.889 34.615 0.00 0.00 0.00 2.93
3991 4380 7.724061 ACAGAAATAACCAACTATCCTGTTTGT 59.276 33.333 0.00 0.00 0.00 2.83
3992 4381 8.023128 CAGAAATAACCAACTATCCTGTTTGTG 58.977 37.037 0.00 0.00 0.00 3.33
3993 4382 7.942341 AGAAATAACCAACTATCCTGTTTGTGA 59.058 33.333 0.00 0.00 0.00 3.58
3994 4383 7.687941 AATAACCAACTATCCTGTTTGTGAG 57.312 36.000 0.00 0.00 0.00 3.51
3995 4384 3.412386 ACCAACTATCCTGTTTGTGAGC 58.588 45.455 0.00 0.00 0.00 4.26
3996 4385 3.181445 ACCAACTATCCTGTTTGTGAGCA 60.181 43.478 0.00 0.00 0.00 4.26
3997 4386 3.820467 CCAACTATCCTGTTTGTGAGCAA 59.180 43.478 0.00 0.00 0.00 3.91
3998 4387 4.083110 CCAACTATCCTGTTTGTGAGCAAG 60.083 45.833 0.00 0.00 35.82 4.01
3999 4388 3.679389 ACTATCCTGTTTGTGAGCAAGG 58.321 45.455 0.00 0.00 35.82 3.61
4000 4389 1.915141 ATCCTGTTTGTGAGCAAGGG 58.085 50.000 0.00 0.00 35.82 3.95
4001 4390 0.550914 TCCTGTTTGTGAGCAAGGGT 59.449 50.000 0.00 0.00 35.82 4.34
4002 4391 1.771854 TCCTGTTTGTGAGCAAGGGTA 59.228 47.619 0.00 0.00 35.82 3.69
4003 4392 2.154462 CCTGTTTGTGAGCAAGGGTAG 58.846 52.381 0.00 0.00 35.82 3.18
4004 4393 2.224523 CCTGTTTGTGAGCAAGGGTAGA 60.225 50.000 0.00 0.00 35.82 2.59
4005 4394 3.560025 CCTGTTTGTGAGCAAGGGTAGAT 60.560 47.826 0.00 0.00 35.82 1.98
4006 4395 4.074970 CTGTTTGTGAGCAAGGGTAGATT 58.925 43.478 0.00 0.00 35.82 2.40
4007 4396 4.469657 TGTTTGTGAGCAAGGGTAGATTT 58.530 39.130 0.00 0.00 35.82 2.17
4008 4397 4.892934 TGTTTGTGAGCAAGGGTAGATTTT 59.107 37.500 0.00 0.00 35.82 1.82
4009 4398 5.362430 TGTTTGTGAGCAAGGGTAGATTTTT 59.638 36.000 0.00 0.00 35.82 1.94
4032 4421 9.482627 TTTTTAACTAAATAACCCAACATGCAG 57.517 29.630 0.00 0.00 0.00 4.41
4033 4422 8.410673 TTTAACTAAATAACCCAACATGCAGA 57.589 30.769 0.00 0.00 0.00 4.26
4034 4423 8.588290 TTAACTAAATAACCCAACATGCAGAT 57.412 30.769 0.00 0.00 0.00 2.90
4035 4424 7.480760 AACTAAATAACCCAACATGCAGATT 57.519 32.000 0.00 0.00 0.00 2.40
4036 4425 8.588290 AACTAAATAACCCAACATGCAGATTA 57.412 30.769 0.00 0.00 0.00 1.75
4037 4426 8.588290 ACTAAATAACCCAACATGCAGATTAA 57.412 30.769 0.00 0.00 0.00 1.40
4038 4427 9.030452 ACTAAATAACCCAACATGCAGATTAAA 57.970 29.630 0.00 0.00 0.00 1.52
4039 4428 9.520204 CTAAATAACCCAACATGCAGATTAAAG 57.480 33.333 0.00 0.00 0.00 1.85
4040 4429 7.480760 AATAACCCAACATGCAGATTAAAGT 57.519 32.000 0.00 0.00 0.00 2.66
4041 4430 4.789012 ACCCAACATGCAGATTAAAGTG 57.211 40.909 0.00 0.00 0.00 3.16
4042 4431 4.151883 ACCCAACATGCAGATTAAAGTGT 58.848 39.130 0.00 0.00 0.00 3.55
4043 4432 4.218417 ACCCAACATGCAGATTAAAGTGTC 59.782 41.667 0.00 0.00 0.00 3.67
4044 4433 4.218200 CCCAACATGCAGATTAAAGTGTCA 59.782 41.667 0.00 0.00 0.00 3.58
4045 4434 5.278907 CCCAACATGCAGATTAAAGTGTCAA 60.279 40.000 0.00 0.00 0.00 3.18
4046 4435 6.215121 CCAACATGCAGATTAAAGTGTCAAA 58.785 36.000 0.00 0.00 0.00 2.69
4047 4436 6.144402 CCAACATGCAGATTAAAGTGTCAAAC 59.856 38.462 0.00 0.00 0.00 2.93
4048 4437 6.639632 ACATGCAGATTAAAGTGTCAAACT 57.360 33.333 0.00 0.00 42.60 2.66
4049 4438 6.441274 ACATGCAGATTAAAGTGTCAAACTG 58.559 36.000 0.00 0.00 39.81 3.16
4050 4439 5.437289 TGCAGATTAAAGTGTCAAACTGG 57.563 39.130 0.00 0.00 39.81 4.00
4051 4440 4.229876 GCAGATTAAAGTGTCAAACTGGC 58.770 43.478 0.00 0.00 39.81 4.85
4052 4441 4.261572 GCAGATTAAAGTGTCAAACTGGCA 60.262 41.667 0.00 0.00 39.81 4.92
4053 4442 5.455392 CAGATTAAAGTGTCAAACTGGCAG 58.545 41.667 14.16 14.16 39.81 4.85
4054 4443 4.520492 AGATTAAAGTGTCAAACTGGCAGG 59.480 41.667 20.34 0.62 39.81 4.85
4055 4444 2.435372 AAAGTGTCAAACTGGCAGGA 57.565 45.000 20.34 3.42 39.81 3.86
4056 4445 2.664402 AAGTGTCAAACTGGCAGGAT 57.336 45.000 20.34 4.15 39.81 3.24
4057 4446 2.664402 AGTGTCAAACTGGCAGGATT 57.336 45.000 20.34 10.66 37.88 3.01
4058 4447 3.788227 AGTGTCAAACTGGCAGGATTA 57.212 42.857 20.34 0.00 37.88 1.75
4059 4448 4.098914 AGTGTCAAACTGGCAGGATTAA 57.901 40.909 20.34 0.00 37.88 1.40
4060 4449 4.469657 AGTGTCAAACTGGCAGGATTAAA 58.530 39.130 20.34 2.90 37.88 1.52
4061 4450 5.079643 AGTGTCAAACTGGCAGGATTAAAT 58.920 37.500 20.34 0.00 37.88 1.40
4062 4451 5.047802 AGTGTCAAACTGGCAGGATTAAATG 60.048 40.000 20.34 6.74 37.88 2.32
4063 4452 4.832266 TGTCAAACTGGCAGGATTAAATGT 59.168 37.500 20.34 0.00 0.00 2.71
4064 4453 5.048083 TGTCAAACTGGCAGGATTAAATGTC 60.048 40.000 20.34 5.35 0.00 3.06
4065 4454 5.183904 GTCAAACTGGCAGGATTAAATGTCT 59.816 40.000 20.34 0.00 0.00 3.41
4066 4455 5.774690 TCAAACTGGCAGGATTAAATGTCTT 59.225 36.000 20.34 0.00 0.00 3.01
4067 4456 5.649782 AACTGGCAGGATTAAATGTCTTG 57.350 39.130 20.34 0.00 0.00 3.02
4068 4457 4.922206 ACTGGCAGGATTAAATGTCTTGA 58.078 39.130 20.34 0.00 0.00 3.02
4069 4458 5.324409 ACTGGCAGGATTAAATGTCTTGAA 58.676 37.500 20.34 0.00 0.00 2.69
4070 4459 5.774690 ACTGGCAGGATTAAATGTCTTGAAA 59.225 36.000 20.34 0.00 0.00 2.69
4071 4460 6.071728 ACTGGCAGGATTAAATGTCTTGAAAG 60.072 38.462 20.34 0.00 0.00 2.62
4072 4461 6.009589 TGGCAGGATTAAATGTCTTGAAAGA 58.990 36.000 0.00 0.00 0.00 2.52
4088 4477 6.483307 TCTTGAAAGACATTAACAGACCTGTG 59.517 38.462 3.13 0.00 44.13 3.66
4089 4478 5.680619 TGAAAGACATTAACAGACCTGTGT 58.319 37.500 3.13 0.00 44.13 3.72
4090 4479 6.822442 TGAAAGACATTAACAGACCTGTGTA 58.178 36.000 3.13 0.00 44.13 2.90
4091 4480 7.276658 TGAAAGACATTAACAGACCTGTGTAA 58.723 34.615 3.13 5.61 44.13 2.41
4092 4481 7.225931 TGAAAGACATTAACAGACCTGTGTAAC 59.774 37.037 3.13 0.00 44.13 2.50
4110 4499 7.624360 GTGTAACAAGATGAAACCATATCCA 57.376 36.000 0.00 0.00 36.32 3.41
4111 4500 8.050778 GTGTAACAAGATGAAACCATATCCAA 57.949 34.615 0.00 0.00 36.32 3.53
4112 4501 7.968405 GTGTAACAAGATGAAACCATATCCAAC 59.032 37.037 0.00 0.00 36.32 3.77
4113 4502 7.667635 TGTAACAAGATGAAACCATATCCAACA 59.332 33.333 0.00 0.00 0.00 3.33
4114 4503 6.764308 ACAAGATGAAACCATATCCAACAG 57.236 37.500 0.00 0.00 0.00 3.16
4115 4504 6.484288 ACAAGATGAAACCATATCCAACAGA 58.516 36.000 0.00 0.00 0.00 3.41
4116 4505 7.121382 ACAAGATGAAACCATATCCAACAGAT 58.879 34.615 0.00 0.00 39.15 2.90
4117 4506 8.274322 ACAAGATGAAACCATATCCAACAGATA 58.726 33.333 0.00 0.00 41.73 1.98
4118 4507 9.123902 CAAGATGAAACCATATCCAACAGATAA 57.876 33.333 0.00 0.00 40.86 1.75
4119 4508 9.699410 AAGATGAAACCATATCCAACAGATAAA 57.301 29.630 0.00 0.00 40.86 1.40
4120 4509 9.125026 AGATGAAACCATATCCAACAGATAAAC 57.875 33.333 0.00 0.00 40.86 2.01
4121 4510 9.125026 GATGAAACCATATCCAACAGATAAACT 57.875 33.333 0.00 0.00 40.86 2.66
4127 4516 9.730705 ACCATATCCAACAGATAAACTATCATG 57.269 33.333 0.00 0.00 40.86 3.07
4128 4517 9.730705 CCATATCCAACAGATAAACTATCATGT 57.269 33.333 0.00 0.00 40.86 3.21
4131 4520 8.899427 ATCCAACAGATAAACTATCATGTGAG 57.101 34.615 0.00 0.00 37.65 3.51
4132 4521 6.763135 TCCAACAGATAAACTATCATGTGAGC 59.237 38.462 0.00 0.00 37.65 4.26
4133 4522 6.539826 CCAACAGATAAACTATCATGTGAGCA 59.460 38.462 0.00 0.00 37.65 4.26
4134 4523 7.404985 CAACAGATAAACTATCATGTGAGCAC 58.595 38.462 0.00 0.00 37.65 4.40
4135 4524 6.051717 ACAGATAAACTATCATGTGAGCACC 58.948 40.000 0.00 0.00 37.65 5.01
4136 4525 6.051074 CAGATAAACTATCATGTGAGCACCA 58.949 40.000 0.00 0.00 37.65 4.17
4137 4526 6.202379 CAGATAAACTATCATGTGAGCACCAG 59.798 42.308 0.00 0.00 37.65 4.00
4138 4527 3.988976 AACTATCATGTGAGCACCAGT 57.011 42.857 0.00 0.00 0.00 4.00
4139 4528 5.420725 AAACTATCATGTGAGCACCAGTA 57.579 39.130 0.00 0.00 0.00 2.74
4140 4529 5.620738 AACTATCATGTGAGCACCAGTAT 57.379 39.130 0.00 0.00 0.00 2.12
4141 4530 5.620738 ACTATCATGTGAGCACCAGTATT 57.379 39.130 0.00 0.00 0.00 1.89
4142 4531 5.605534 ACTATCATGTGAGCACCAGTATTC 58.394 41.667 0.00 0.00 0.00 1.75
4143 4532 3.979101 TCATGTGAGCACCAGTATTCA 57.021 42.857 0.00 0.00 0.00 2.57
4144 4533 4.284829 TCATGTGAGCACCAGTATTCAA 57.715 40.909 0.00 0.00 0.00 2.69
4145 4534 4.256110 TCATGTGAGCACCAGTATTCAAG 58.744 43.478 0.00 0.00 0.00 3.02
4146 4535 2.426522 TGTGAGCACCAGTATTCAAGC 58.573 47.619 0.00 0.00 0.00 4.01
4147 4536 1.740025 GTGAGCACCAGTATTCAAGCC 59.260 52.381 0.00 0.00 0.00 4.35
4148 4537 1.350684 TGAGCACCAGTATTCAAGCCA 59.649 47.619 0.00 0.00 0.00 4.75
4149 4538 2.025981 TGAGCACCAGTATTCAAGCCAT 60.026 45.455 0.00 0.00 0.00 4.40
4150 4539 2.357009 GAGCACCAGTATTCAAGCCATG 59.643 50.000 0.00 0.00 0.00 3.66
4151 4540 2.025981 AGCACCAGTATTCAAGCCATGA 60.026 45.455 0.00 0.00 35.85 3.07
4152 4541 2.954318 GCACCAGTATTCAAGCCATGAT 59.046 45.455 0.00 0.00 38.03 2.45
4153 4542 3.004106 GCACCAGTATTCAAGCCATGATC 59.996 47.826 0.00 0.00 38.03 2.92
4154 4543 4.458397 CACCAGTATTCAAGCCATGATCT 58.542 43.478 0.00 0.00 38.03 2.75
4155 4544 4.885907 CACCAGTATTCAAGCCATGATCTT 59.114 41.667 0.00 0.00 38.03 2.40
4156 4545 5.008415 CACCAGTATTCAAGCCATGATCTTC 59.992 44.000 0.00 0.00 38.03 2.87
4157 4546 4.212847 CCAGTATTCAAGCCATGATCTTCG 59.787 45.833 0.00 0.00 38.03 3.79
4158 4547 3.812053 AGTATTCAAGCCATGATCTTCGC 59.188 43.478 0.00 0.00 38.03 4.70
4159 4548 1.382522 TTCAAGCCATGATCTTCGCC 58.617 50.000 0.00 0.00 38.03 5.54
4160 4549 0.811219 TCAAGCCATGATCTTCGCCG 60.811 55.000 0.00 0.00 31.50 6.46
4161 4550 0.811219 CAAGCCATGATCTTCGCCGA 60.811 55.000 0.00 0.00 0.00 5.54
4162 4551 0.811616 AAGCCATGATCTTCGCCGAC 60.812 55.000 0.00 0.00 0.00 4.79
4163 4552 2.247437 GCCATGATCTTCGCCGACC 61.247 63.158 0.00 0.00 0.00 4.79
4164 4553 1.443407 CCATGATCTTCGCCGACCT 59.557 57.895 0.00 0.00 0.00 3.85
4165 4554 0.598680 CCATGATCTTCGCCGACCTC 60.599 60.000 0.00 0.00 0.00 3.85
4166 4555 0.103026 CATGATCTTCGCCGACCTCA 59.897 55.000 0.00 0.00 0.00 3.86
4167 4556 1.043816 ATGATCTTCGCCGACCTCAT 58.956 50.000 0.00 0.00 0.00 2.90
4168 4557 0.103026 TGATCTTCGCCGACCTCATG 59.897 55.000 0.00 0.00 0.00 3.07
4169 4558 0.103208 GATCTTCGCCGACCTCATGT 59.897 55.000 0.00 0.00 0.00 3.21
4170 4559 1.337071 GATCTTCGCCGACCTCATGTA 59.663 52.381 0.00 0.00 0.00 2.29
4171 4560 1.179152 TCTTCGCCGACCTCATGTAA 58.821 50.000 0.00 0.00 0.00 2.41
4172 4561 1.546923 TCTTCGCCGACCTCATGTAAA 59.453 47.619 0.00 0.00 0.00 2.01
4173 4562 1.927174 CTTCGCCGACCTCATGTAAAG 59.073 52.381 0.00 0.00 0.00 1.85
4174 4563 1.179152 TCGCCGACCTCATGTAAAGA 58.821 50.000 0.00 0.00 0.00 2.52
4175 4564 1.135199 TCGCCGACCTCATGTAAAGAC 60.135 52.381 0.00 0.00 0.00 3.01
4176 4565 1.135083 CGCCGACCTCATGTAAAGACT 60.135 52.381 0.00 0.00 0.00 3.24
4177 4566 2.271800 GCCGACCTCATGTAAAGACTG 58.728 52.381 0.00 0.00 0.00 3.51
4178 4567 2.353803 GCCGACCTCATGTAAAGACTGT 60.354 50.000 0.00 0.00 0.00 3.55
4179 4568 3.512680 CCGACCTCATGTAAAGACTGTC 58.487 50.000 0.00 0.00 0.00 3.51
4180 4569 3.512680 CGACCTCATGTAAAGACTGTCC 58.487 50.000 3.76 0.00 0.00 4.02
4181 4570 3.056821 CGACCTCATGTAAAGACTGTCCA 60.057 47.826 3.76 0.00 0.00 4.02
4182 4571 4.246458 GACCTCATGTAAAGACTGTCCAC 58.754 47.826 3.76 1.25 0.00 4.02
4183 4572 3.646162 ACCTCATGTAAAGACTGTCCACA 59.354 43.478 3.76 7.03 0.00 4.17
4184 4573 4.102524 ACCTCATGTAAAGACTGTCCACAA 59.897 41.667 3.76 0.00 0.00 3.33
4185 4574 4.452455 CCTCATGTAAAGACTGTCCACAAC 59.548 45.833 3.76 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.893398 GTCCCGATGCGAAGGACT 59.107 61.111 7.54 0.00 45.49 3.85
140 141 1.545706 GCAACGAAGGGGGAGTCTCT 61.546 60.000 0.00 0.00 0.00 3.10
231 233 1.600636 CTCCGGAAAGCAAGGCACA 60.601 57.895 5.23 0.00 0.00 4.57
694 697 1.153667 GAGAGCAAGAGGGACGCAG 60.154 63.158 0.00 0.00 0.00 5.18
695 698 2.650116 GGAGAGCAAGAGGGACGCA 61.650 63.158 0.00 0.00 0.00 5.24
696 699 2.185608 GGAGAGCAAGAGGGACGC 59.814 66.667 0.00 0.00 0.00 5.19
697 700 0.967887 TGAGGAGAGCAAGAGGGACG 60.968 60.000 0.00 0.00 0.00 4.79
752 755 9.496873 TGAAAGACCGTATCTATTTCAAAAAGA 57.503 29.630 0.00 0.00 36.27 2.52
753 756 9.760660 CTGAAAGACCGTATCTATTTCAAAAAG 57.239 33.333 0.00 0.00 34.96 2.27
754 757 9.280174 ACTGAAAGACCGTATCTATTTCAAAAA 57.720 29.630 0.00 0.00 34.96 1.94
755 758 8.717821 CACTGAAAGACCGTATCTATTTCAAAA 58.282 33.333 0.00 0.00 34.96 2.44
756 759 7.876068 ACACTGAAAGACCGTATCTATTTCAAA 59.124 33.333 0.00 0.00 34.96 2.69
757 760 7.383687 ACACTGAAAGACCGTATCTATTTCAA 58.616 34.615 0.00 0.00 34.96 2.69
758 761 6.931838 ACACTGAAAGACCGTATCTATTTCA 58.068 36.000 0.00 0.00 36.27 2.69
759 762 7.829378 AACACTGAAAGACCGTATCTATTTC 57.171 36.000 0.00 0.00 36.27 2.17
760 763 7.660208 ACAAACACTGAAAGACCGTATCTATTT 59.340 33.333 0.00 0.00 36.27 1.40
762 765 6.698380 ACAAACACTGAAAGACCGTATCTAT 58.302 36.000 0.00 0.00 36.27 1.98
763 766 6.092955 ACAAACACTGAAAGACCGTATCTA 57.907 37.500 0.00 0.00 36.27 1.98
764 767 4.957296 ACAAACACTGAAAGACCGTATCT 58.043 39.130 0.00 0.00 40.46 1.98
766 769 6.285990 ACTAACAAACACTGAAAGACCGTAT 58.714 36.000 0.00 0.00 37.43 3.06
768 771 4.510571 ACTAACAAACACTGAAAGACCGT 58.489 39.130 0.00 0.00 37.43 4.83
770 773 5.526111 TGCTACTAACAAACACTGAAAGACC 59.474 40.000 0.00 0.00 37.43 3.85
771 774 6.258068 ACTGCTACTAACAAACACTGAAAGAC 59.742 38.462 0.00 0.00 37.43 3.01
773 776 6.604735 ACTGCTACTAACAAACACTGAAAG 57.395 37.500 0.00 0.00 42.29 2.62
775 778 6.995511 AAACTGCTACTAACAAACACTGAA 57.004 33.333 0.00 0.00 0.00 3.02
776 779 6.995511 AAAACTGCTACTAACAAACACTGA 57.004 33.333 0.00 0.00 0.00 3.41
777 780 9.382244 GAATAAAACTGCTACTAACAAACACTG 57.618 33.333 0.00 0.00 0.00 3.66
778 781 9.116067 TGAATAAAACTGCTACTAACAAACACT 57.884 29.630 0.00 0.00 0.00 3.55
779 782 9.382244 CTGAATAAAACTGCTACTAACAAACAC 57.618 33.333 0.00 0.00 0.00 3.32
780 783 9.332502 TCTGAATAAAACTGCTACTAACAAACA 57.667 29.630 0.00 0.00 0.00 2.83
783 786 9.555727 AGTTCTGAATAAAACTGCTACTAACAA 57.444 29.630 0.00 0.00 34.52 2.83
784 787 9.555727 AAGTTCTGAATAAAACTGCTACTAACA 57.444 29.630 0.00 0.00 35.93 2.41
787 790 8.504005 GCAAAGTTCTGAATAAAACTGCTACTA 58.496 33.333 0.00 0.00 35.93 1.82
788 791 7.229506 AGCAAAGTTCTGAATAAAACTGCTACT 59.770 33.333 0.00 0.00 36.03 2.57
789 792 7.363431 AGCAAAGTTCTGAATAAAACTGCTAC 58.637 34.615 0.00 0.00 36.03 3.58
790 793 7.510549 AGCAAAGTTCTGAATAAAACTGCTA 57.489 32.000 0.00 0.00 36.03 3.49
791 794 6.396829 AGCAAAGTTCTGAATAAAACTGCT 57.603 33.333 0.00 0.67 35.93 4.24
792 795 6.562825 GCAAGCAAAGTTCTGAATAAAACTGC 60.563 38.462 0.00 0.00 35.93 4.40
793 796 6.698766 AGCAAGCAAAGTTCTGAATAAAACTG 59.301 34.615 0.00 0.00 35.93 3.16
794 797 6.809869 AGCAAGCAAAGTTCTGAATAAAACT 58.190 32.000 0.00 0.00 37.32 2.66
795 798 7.468922 AAGCAAGCAAAGTTCTGAATAAAAC 57.531 32.000 0.00 0.00 0.00 2.43
796 799 7.763528 TGAAAGCAAGCAAAGTTCTGAATAAAA 59.236 29.630 0.00 0.00 0.00 1.52
797 800 7.264221 TGAAAGCAAGCAAAGTTCTGAATAAA 58.736 30.769 0.00 0.00 0.00 1.40
798 801 6.804677 TGAAAGCAAGCAAAGTTCTGAATAA 58.195 32.000 0.00 0.00 0.00 1.40
799 802 6.039717 ACTGAAAGCAAGCAAAGTTCTGAATA 59.960 34.615 0.00 0.00 37.60 1.75
800 803 5.163478 ACTGAAAGCAAGCAAAGTTCTGAAT 60.163 36.000 0.00 0.00 37.60 2.57
801 804 4.158394 ACTGAAAGCAAGCAAAGTTCTGAA 59.842 37.500 0.00 0.00 37.60 3.02
802 805 3.696051 ACTGAAAGCAAGCAAAGTTCTGA 59.304 39.130 0.00 0.00 37.60 3.27
823 826 8.621286 TGAATAGTTCTCTTCTGTTTGGAAAAC 58.379 33.333 0.00 0.00 0.00 2.43
872 875 2.720578 CACGCTGCATGTTTGTTACAAG 59.279 45.455 0.00 0.00 40.89 3.16
873 876 2.356069 TCACGCTGCATGTTTGTTACAA 59.644 40.909 0.00 0.00 40.89 2.41
874 877 1.943340 TCACGCTGCATGTTTGTTACA 59.057 42.857 0.00 0.00 41.97 2.41
875 878 2.032030 AGTCACGCTGCATGTTTGTTAC 60.032 45.455 0.00 0.00 0.00 2.50
912 1050 0.741221 GGACGAGTGATCACTTGGGC 60.741 60.000 35.65 27.97 45.10 5.36
942 1089 0.108138 AACGCCCATAGTGAGTGAGC 60.108 55.000 0.00 0.00 0.00 4.26
1256 1424 4.626081 AAGCAAGCGGCCACGACT 62.626 61.111 2.24 0.00 46.50 4.18
1258 1426 4.927782 ACAAGCAAGCGGCCACGA 62.928 61.111 2.24 0.00 46.50 4.35
1265 1433 0.590195 AAGCAGAAGACAAGCAAGCG 59.410 50.000 0.00 0.00 0.00 4.68
1276 1444 1.423395 GACGACAGTCCAAGCAGAAG 58.577 55.000 0.00 0.00 41.41 2.85
1316 1484 1.071605 CTTAAGCAGTCAGTCGCCAC 58.928 55.000 0.00 0.00 0.00 5.01
1505 1708 2.684881 CTGAAGAAACAACACCAGCACT 59.315 45.455 0.00 0.00 0.00 4.40
1506 1709 2.796032 GCTGAAGAAACAACACCAGCAC 60.796 50.000 0.00 0.00 44.40 4.40
1507 1710 1.405105 GCTGAAGAAACAACACCAGCA 59.595 47.619 0.00 0.00 44.40 4.41
1508 1711 1.678101 AGCTGAAGAAACAACACCAGC 59.322 47.619 0.00 0.00 45.09 4.85
1509 1712 4.555511 GCTTAGCTGAAGAAACAACACCAG 60.556 45.833 0.00 0.00 37.33 4.00
1511 1714 3.607078 CGCTTAGCTGAAGAAACAACACC 60.607 47.826 1.76 0.00 37.33 4.16
1527 1730 0.659957 GCTTCTTCCATGCCGCTTAG 59.340 55.000 0.00 0.00 0.00 2.18
1532 1735 2.117156 CAGGGCTTCTTCCATGCCG 61.117 63.158 0.00 0.00 44.86 5.69
1541 1744 1.764054 CGGGATCTCCAGGGCTTCT 60.764 63.158 0.00 0.00 37.91 2.85
1612 1815 1.486310 TCCACCGGATGAAGATTCTGG 59.514 52.381 9.46 0.12 43.99 3.86
1615 1818 3.808728 TCATTCCACCGGATGAAGATTC 58.191 45.455 9.46 0.00 0.00 2.52
1628 1831 2.223641 ACATGCGCAATCATCATTCCAC 60.224 45.455 17.11 0.00 0.00 4.02
1629 1832 2.025898 ACATGCGCAATCATCATTCCA 58.974 42.857 17.11 0.00 0.00 3.53
1631 1834 2.304413 CGACATGCGCAATCATCATTC 58.696 47.619 17.11 0.99 0.00 2.67
1674 1902 4.037208 CACCAGTTGCTCTTGTCTGAAAAT 59.963 41.667 0.00 0.00 0.00 1.82
1754 1982 5.107837 GCTCGTATATTCTTGACGTTGGATG 60.108 44.000 0.00 0.00 37.81 3.51
1841 2079 7.231317 TGTTTCTGAAATGCTTTCTTGAGGTAT 59.769 33.333 6.06 0.00 40.32 2.73
1867 2105 9.144747 GAAGTGCATTATACTCATTACGATCAT 57.855 33.333 0.00 0.00 0.00 2.45
1868 2106 8.141268 TGAAGTGCATTATACTCATTACGATCA 58.859 33.333 0.00 0.00 0.00 2.92
1871 2109 7.712797 TCTGAAGTGCATTATACTCATTACGA 58.287 34.615 0.00 0.00 0.00 3.43
1875 2113 9.539825 CTAGTTCTGAAGTGCATTATACTCATT 57.460 33.333 7.98 0.00 0.00 2.57
1876 2114 8.700051 ACTAGTTCTGAAGTGCATTATACTCAT 58.300 33.333 7.98 0.00 0.00 2.90
1877 2115 8.067751 ACTAGTTCTGAAGTGCATTATACTCA 57.932 34.615 7.98 0.00 0.00 3.41
1883 2121 9.719355 TGAATTTACTAGTTCTGAAGTGCATTA 57.281 29.630 0.00 0.00 0.00 1.90
1884 2122 8.621532 TGAATTTACTAGTTCTGAAGTGCATT 57.378 30.769 0.00 0.00 0.00 3.56
1885 2123 8.798859 ATGAATTTACTAGTTCTGAAGTGCAT 57.201 30.769 0.00 0.00 0.00 3.96
1886 2124 9.151471 GTATGAATTTACTAGTTCTGAAGTGCA 57.849 33.333 0.00 0.00 0.00 4.57
1975 2223 7.987458 TCCACTATGCTCTTCCATTTAGTTTAG 59.013 37.037 0.00 0.00 0.00 1.85
2048 2301 4.134379 AGTGCTGATGGAGATGTTACAG 57.866 45.455 0.00 0.00 0.00 2.74
2233 2491 7.078228 GTGAATTTTAGAAACAATCGAGCAGT 58.922 34.615 0.00 0.00 0.00 4.40
2236 2494 6.378582 TGGTGAATTTTAGAAACAATCGAGC 58.621 36.000 0.00 0.00 0.00 5.03
2291 2554 3.196254 GCAACCCTGGTCATGAAATCAAT 59.804 43.478 0.00 0.00 0.00 2.57
2296 2559 0.482446 AGGCAACCCTGGTCATGAAA 59.518 50.000 0.00 0.00 40.94 2.69
2322 2585 2.480555 CCGATTGACAGCGTTGGC 59.519 61.111 3.74 0.00 40.37 4.52
2560 2915 3.755378 AGCCAAAAACATCAGTCTAGCAG 59.245 43.478 0.00 0.00 0.00 4.24
2649 3004 6.422100 CGGAATCCATATCTTGTCTGTTGTAG 59.578 42.308 0.00 0.00 0.00 2.74
2758 3136 8.250332 ACACATCATTTACTGTTTTCAAGTTGT 58.750 29.630 2.11 0.00 0.00 3.32
2803 3181 4.532834 ACCTCTTGCCTTTTCAACACTAA 58.467 39.130 0.00 0.00 0.00 2.24
2819 3197 3.544698 TCTCCAAGTACCTGACCTCTT 57.455 47.619 0.00 0.00 0.00 2.85
2971 3349 9.541884 AAGGTGTAAACCTGAAAATAATGGTAT 57.458 29.630 5.00 0.00 40.59 2.73
3017 3395 0.769873 CCTGGCATTAGGCTCTGGAT 59.230 55.000 0.00 0.00 44.01 3.41
3137 3515 5.362556 TCAAGTTCTGCAAAAGATGTAGC 57.637 39.130 0.00 0.00 41.13 3.58
3197 3583 7.783090 AGTTCTCATGATATGTGAATGTGAC 57.217 36.000 0.00 0.00 42.50 3.67
3340 3726 0.183014 TCTTAGGTCTCGGATCCGCT 59.817 55.000 29.62 21.45 39.59 5.52
3419 3806 3.854666 TCAGCTTGCTCATTGTCTAGAC 58.145 45.455 16.32 16.32 0.00 2.59
3430 3817 1.397692 GAGCTTGTCATCAGCTTGCTC 59.602 52.381 0.61 0.00 39.21 4.26
3449 3836 3.780294 AGCCACCAGGTATAAACATGAGA 59.220 43.478 0.00 0.00 39.79 3.27
3457 3844 7.071273 ACAGTATAGTAAGCCACCAGGTATAA 58.929 38.462 0.00 0.00 37.19 0.98
3500 3887 9.958234 CGGTATCATTTATCTCTATGAGTATGG 57.042 37.037 0.00 0.00 34.52 2.74
3584 3971 5.294734 AGACGAAACCAAGTTAAAGGGTA 57.705 39.130 0.00 0.00 33.71 3.69
3654 4042 5.045213 TCCTGTGTGATTTCTTAATGCCCTA 60.045 40.000 0.00 0.00 0.00 3.53
3662 4050 5.316167 ACAATGCTCCTGTGTGATTTCTTA 58.684 37.500 0.00 0.00 0.00 2.10
3681 4069 7.499321 TTGAACCGATGTTTGTAGTTACAAT 57.501 32.000 5.62 0.00 44.72 2.71
3699 4087 4.439305 TGCTGCTGTGAATATTTGAACC 57.561 40.909 0.00 0.00 0.00 3.62
3702 4090 5.183522 TGTTGATGCTGCTGTGAATATTTGA 59.816 36.000 0.00 0.00 0.00 2.69
3792 4180 1.175983 TTTCTTTGGCATCGGCGGTT 61.176 50.000 7.21 0.00 42.47 4.44
3854 4242 6.165577 AGCTTTTTATTTTGCCTGTGTATGG 58.834 36.000 0.00 0.00 0.00 2.74
3855 4243 8.755696 TTAGCTTTTTATTTTGCCTGTGTATG 57.244 30.769 0.00 0.00 0.00 2.39
3911 4300 6.273071 GGTTTAAGATGAACCATGTTATGCC 58.727 40.000 1.36 0.00 44.71 4.40
3931 4320 5.467735 GTGTACCGTGAAAACTAGATGGTTT 59.532 40.000 0.00 0.00 40.59 3.27
3948 4337 6.961359 TTTCTGTATGATTGAAGTGTACCG 57.039 37.500 0.00 0.00 0.00 4.02
3966 4355 8.023128 CACAAACAGGATAGTTGGTTATTTCTG 58.977 37.037 0.00 0.00 33.45 3.02
3967 4356 7.942341 TCACAAACAGGATAGTTGGTTATTTCT 59.058 33.333 0.00 0.00 33.45 2.52
3968 4357 8.106247 TCACAAACAGGATAGTTGGTTATTTC 57.894 34.615 0.00 0.00 33.45 2.17
3969 4358 7.309194 GCTCACAAACAGGATAGTTGGTTATTT 60.309 37.037 0.00 0.00 33.45 1.40
3970 4359 6.151144 GCTCACAAACAGGATAGTTGGTTATT 59.849 38.462 0.00 0.00 33.45 1.40
3971 4360 5.648092 GCTCACAAACAGGATAGTTGGTTAT 59.352 40.000 0.00 0.00 33.45 1.89
3972 4361 5.001232 GCTCACAAACAGGATAGTTGGTTA 58.999 41.667 0.00 0.00 33.45 2.85
3973 4362 3.821033 GCTCACAAACAGGATAGTTGGTT 59.179 43.478 0.00 0.00 33.45 3.67
3974 4363 3.181445 TGCTCACAAACAGGATAGTTGGT 60.181 43.478 0.00 0.00 36.09 3.67
3975 4364 3.411446 TGCTCACAAACAGGATAGTTGG 58.589 45.455 0.00 0.00 0.00 3.77
3976 4365 4.083110 CCTTGCTCACAAACAGGATAGTTG 60.083 45.833 0.00 0.00 34.74 3.16
3977 4366 4.074970 CCTTGCTCACAAACAGGATAGTT 58.925 43.478 0.00 0.00 34.74 2.24
3978 4367 3.560025 CCCTTGCTCACAAACAGGATAGT 60.560 47.826 0.00 0.00 34.74 2.12
3979 4368 3.012518 CCCTTGCTCACAAACAGGATAG 58.987 50.000 0.00 0.00 34.74 2.08
3980 4369 2.375174 ACCCTTGCTCACAAACAGGATA 59.625 45.455 0.00 0.00 34.74 2.59
3981 4370 1.145738 ACCCTTGCTCACAAACAGGAT 59.854 47.619 0.00 0.00 34.74 3.24
3982 4371 0.550914 ACCCTTGCTCACAAACAGGA 59.449 50.000 0.00 0.00 34.74 3.86
3983 4372 2.154462 CTACCCTTGCTCACAAACAGG 58.846 52.381 0.00 0.00 34.74 4.00
3984 4373 3.126001 TCTACCCTTGCTCACAAACAG 57.874 47.619 0.00 0.00 34.74 3.16
3985 4374 3.788227 ATCTACCCTTGCTCACAAACA 57.212 42.857 0.00 0.00 34.74 2.83
3986 4375 5.453567 AAAATCTACCCTTGCTCACAAAC 57.546 39.130 0.00 0.00 34.74 2.93
4006 4395 9.482627 CTGCATGTTGGGTTATTTAGTTAAAAA 57.517 29.630 0.00 0.00 0.00 1.94
4007 4396 8.861086 TCTGCATGTTGGGTTATTTAGTTAAAA 58.139 29.630 0.00 0.00 0.00 1.52
4008 4397 8.410673 TCTGCATGTTGGGTTATTTAGTTAAA 57.589 30.769 0.00 0.00 0.00 1.52
4009 4398 8.588290 ATCTGCATGTTGGGTTATTTAGTTAA 57.412 30.769 0.00 0.00 0.00 2.01
4010 4399 8.588290 AATCTGCATGTTGGGTTATTTAGTTA 57.412 30.769 0.00 0.00 0.00 2.24
4011 4400 7.480760 AATCTGCATGTTGGGTTATTTAGTT 57.519 32.000 0.00 0.00 0.00 2.24
4012 4401 8.588290 TTAATCTGCATGTTGGGTTATTTAGT 57.412 30.769 0.00 0.00 0.00 2.24
4013 4402 9.520204 CTTTAATCTGCATGTTGGGTTATTTAG 57.480 33.333 0.00 0.00 0.00 1.85
4014 4403 9.030452 ACTTTAATCTGCATGTTGGGTTATTTA 57.970 29.630 0.00 0.00 0.00 1.40
4015 4404 7.818930 CACTTTAATCTGCATGTTGGGTTATTT 59.181 33.333 0.00 0.00 0.00 1.40
4016 4405 7.039082 ACACTTTAATCTGCATGTTGGGTTATT 60.039 33.333 0.00 0.00 0.00 1.40
4017 4406 6.437162 ACACTTTAATCTGCATGTTGGGTTAT 59.563 34.615 0.00 0.00 0.00 1.89
4018 4407 5.772672 ACACTTTAATCTGCATGTTGGGTTA 59.227 36.000 0.00 0.00 0.00 2.85
4019 4408 4.588528 ACACTTTAATCTGCATGTTGGGTT 59.411 37.500 0.00 0.00 0.00 4.11
4020 4409 4.151883 ACACTTTAATCTGCATGTTGGGT 58.848 39.130 0.00 0.00 0.00 4.51
4021 4410 4.218200 TGACACTTTAATCTGCATGTTGGG 59.782 41.667 0.00 0.00 0.00 4.12
4022 4411 5.375417 TGACACTTTAATCTGCATGTTGG 57.625 39.130 0.00 0.00 0.00 3.77
4023 4412 6.919662 AGTTTGACACTTTAATCTGCATGTTG 59.080 34.615 0.00 0.00 27.32 3.33
4024 4413 6.919662 CAGTTTGACACTTTAATCTGCATGTT 59.080 34.615 0.00 0.00 30.92 2.71
4025 4414 6.441274 CAGTTTGACACTTTAATCTGCATGT 58.559 36.000 0.00 0.00 30.92 3.21
4026 4415 5.860182 CCAGTTTGACACTTTAATCTGCATG 59.140 40.000 0.00 0.00 30.92 4.06
4027 4416 5.565439 GCCAGTTTGACACTTTAATCTGCAT 60.565 40.000 0.00 0.00 30.92 3.96
4028 4417 4.261572 GCCAGTTTGACACTTTAATCTGCA 60.262 41.667 0.00 0.00 30.92 4.41
4029 4418 4.229876 GCCAGTTTGACACTTTAATCTGC 58.770 43.478 0.00 0.00 30.92 4.26
4030 4419 5.437289 TGCCAGTTTGACACTTTAATCTG 57.563 39.130 0.00 0.00 30.92 2.90
4031 4420 4.520492 CCTGCCAGTTTGACACTTTAATCT 59.480 41.667 0.00 0.00 30.92 2.40
4032 4421 4.518970 TCCTGCCAGTTTGACACTTTAATC 59.481 41.667 0.00 0.00 30.92 1.75
4033 4422 4.469657 TCCTGCCAGTTTGACACTTTAAT 58.530 39.130 0.00 0.00 30.92 1.40
4034 4423 3.892284 TCCTGCCAGTTTGACACTTTAA 58.108 40.909 0.00 0.00 30.92 1.52
4035 4424 3.569194 TCCTGCCAGTTTGACACTTTA 57.431 42.857 0.00 0.00 30.92 1.85
4036 4425 2.435372 TCCTGCCAGTTTGACACTTT 57.565 45.000 0.00 0.00 30.92 2.66
4037 4426 2.664402 ATCCTGCCAGTTTGACACTT 57.336 45.000 0.00 0.00 30.92 3.16
4038 4427 2.664402 AATCCTGCCAGTTTGACACT 57.336 45.000 0.00 0.00 35.35 3.55
4039 4428 4.846779 TTTAATCCTGCCAGTTTGACAC 57.153 40.909 0.00 0.00 0.00 3.67
4040 4429 4.832266 ACATTTAATCCTGCCAGTTTGACA 59.168 37.500 0.00 0.00 0.00 3.58
4041 4430 5.183904 AGACATTTAATCCTGCCAGTTTGAC 59.816 40.000 0.00 0.00 0.00 3.18
4042 4431 5.324409 AGACATTTAATCCTGCCAGTTTGA 58.676 37.500 0.00 0.00 0.00 2.69
4043 4432 5.649782 AGACATTTAATCCTGCCAGTTTG 57.350 39.130 0.00 0.00 0.00 2.93
4044 4433 5.774690 TCAAGACATTTAATCCTGCCAGTTT 59.225 36.000 0.00 0.00 0.00 2.66
4045 4434 5.324409 TCAAGACATTTAATCCTGCCAGTT 58.676 37.500 0.00 0.00 0.00 3.16
4046 4435 4.922206 TCAAGACATTTAATCCTGCCAGT 58.078 39.130 0.00 0.00 0.00 4.00
4047 4436 5.902613 TTCAAGACATTTAATCCTGCCAG 57.097 39.130 0.00 0.00 0.00 4.85
4048 4437 6.009589 TCTTTCAAGACATTTAATCCTGCCA 58.990 36.000 0.00 0.00 0.00 4.92
4049 4438 6.515272 TCTTTCAAGACATTTAATCCTGCC 57.485 37.500 0.00 0.00 0.00 4.85
4063 4452 6.483307 CACAGGTCTGTTAATGTCTTTCAAGA 59.517 38.462 0.20 0.00 42.83 3.02
4064 4453 6.260936 ACACAGGTCTGTTAATGTCTTTCAAG 59.739 38.462 0.20 0.00 42.83 3.02
4065 4454 6.119536 ACACAGGTCTGTTAATGTCTTTCAA 58.880 36.000 0.20 0.00 42.83 2.69
4066 4455 5.680619 ACACAGGTCTGTTAATGTCTTTCA 58.319 37.500 0.20 0.00 42.83 2.69
4067 4456 7.225931 TGTTACACAGGTCTGTTAATGTCTTTC 59.774 37.037 0.20 0.00 42.83 2.62
4068 4457 7.051623 TGTTACACAGGTCTGTTAATGTCTTT 58.948 34.615 0.20 0.00 42.83 2.52
4069 4458 6.588204 TGTTACACAGGTCTGTTAATGTCTT 58.412 36.000 0.20 0.00 42.83 3.01
4070 4459 6.169557 TGTTACACAGGTCTGTTAATGTCT 57.830 37.500 0.20 0.00 42.83 3.41
4071 4460 6.704493 TCTTGTTACACAGGTCTGTTAATGTC 59.296 38.462 0.20 0.00 42.83 3.06
4072 4461 6.588204 TCTTGTTACACAGGTCTGTTAATGT 58.412 36.000 0.20 0.00 42.83 2.71
4073 4462 7.387673 TCATCTTGTTACACAGGTCTGTTAATG 59.612 37.037 0.20 0.00 42.83 1.90
4074 4463 7.450074 TCATCTTGTTACACAGGTCTGTTAAT 58.550 34.615 0.20 0.00 42.83 1.40
4075 4464 6.822442 TCATCTTGTTACACAGGTCTGTTAA 58.178 36.000 0.20 2.26 42.83 2.01
4076 4465 6.413783 TCATCTTGTTACACAGGTCTGTTA 57.586 37.500 0.20 0.00 42.83 2.41
4077 4466 5.290493 TCATCTTGTTACACAGGTCTGTT 57.710 39.130 0.20 0.00 42.83 3.16
4078 4467 4.955811 TCATCTTGTTACACAGGTCTGT 57.044 40.909 0.00 0.00 46.17 3.41
4079 4468 5.049405 GGTTTCATCTTGTTACACAGGTCTG 60.049 44.000 0.00 0.00 0.00 3.51
4080 4469 5.063880 GGTTTCATCTTGTTACACAGGTCT 58.936 41.667 0.00 0.00 0.00 3.85
4081 4470 4.819630 TGGTTTCATCTTGTTACACAGGTC 59.180 41.667 0.00 0.00 0.00 3.85
4082 4471 4.787551 TGGTTTCATCTTGTTACACAGGT 58.212 39.130 0.00 0.00 0.00 4.00
4083 4472 5.964958 ATGGTTTCATCTTGTTACACAGG 57.035 39.130 0.00 0.00 0.00 4.00
4084 4473 7.336679 TGGATATGGTTTCATCTTGTTACACAG 59.663 37.037 0.00 0.00 34.96 3.66
4085 4474 7.171653 TGGATATGGTTTCATCTTGTTACACA 58.828 34.615 0.00 0.00 34.96 3.72
4086 4475 7.624360 TGGATATGGTTTCATCTTGTTACAC 57.376 36.000 0.00 0.00 34.96 2.90
4087 4476 7.667635 TGTTGGATATGGTTTCATCTTGTTACA 59.332 33.333 0.00 0.00 34.96 2.41
4088 4477 8.050778 TGTTGGATATGGTTTCATCTTGTTAC 57.949 34.615 0.00 0.00 34.96 2.50
4089 4478 8.106462 TCTGTTGGATATGGTTTCATCTTGTTA 58.894 33.333 0.00 0.00 34.96 2.41
4090 4479 6.947733 TCTGTTGGATATGGTTTCATCTTGTT 59.052 34.615 0.00 0.00 34.96 2.83
4091 4480 6.484288 TCTGTTGGATATGGTTTCATCTTGT 58.516 36.000 0.00 0.00 34.96 3.16
4092 4481 7.578310 ATCTGTTGGATATGGTTTCATCTTG 57.422 36.000 0.00 0.00 34.96 3.02
4093 4482 9.699410 TTTATCTGTTGGATATGGTTTCATCTT 57.301 29.630 0.00 0.00 36.86 2.40
4094 4483 9.125026 GTTTATCTGTTGGATATGGTTTCATCT 57.875 33.333 0.00 0.00 36.86 2.90
4095 4484 9.125026 AGTTTATCTGTTGGATATGGTTTCATC 57.875 33.333 0.00 0.00 36.86 2.92
4101 4490 9.730705 CATGATAGTTTATCTGTTGGATATGGT 57.269 33.333 0.00 0.00 36.86 3.55
4102 4491 9.730705 ACATGATAGTTTATCTGTTGGATATGG 57.269 33.333 0.00 0.00 36.86 2.74
4105 4494 9.987272 CTCACATGATAGTTTATCTGTTGGATA 57.013 33.333 0.00 0.00 36.17 2.59
4106 4495 7.443575 GCTCACATGATAGTTTATCTGTTGGAT 59.556 37.037 0.00 0.00 36.17 3.41
4107 4496 6.763135 GCTCACATGATAGTTTATCTGTTGGA 59.237 38.462 0.00 0.00 36.17 3.53
4108 4497 6.539826 TGCTCACATGATAGTTTATCTGTTGG 59.460 38.462 0.00 0.00 36.17 3.77
4109 4498 7.404985 GTGCTCACATGATAGTTTATCTGTTG 58.595 38.462 0.00 0.00 36.17 3.33
4110 4499 6.540189 GGTGCTCACATGATAGTTTATCTGTT 59.460 38.462 0.00 0.00 36.17 3.16
4111 4500 6.051717 GGTGCTCACATGATAGTTTATCTGT 58.948 40.000 0.00 0.00 36.17 3.41
4112 4501 6.051074 TGGTGCTCACATGATAGTTTATCTG 58.949 40.000 0.00 0.00 36.17 2.90
4113 4502 6.126940 ACTGGTGCTCACATGATAGTTTATCT 60.127 38.462 0.00 0.00 36.17 1.98
4114 4503 6.051717 ACTGGTGCTCACATGATAGTTTATC 58.948 40.000 0.00 0.00 35.74 1.75
4115 4504 5.994250 ACTGGTGCTCACATGATAGTTTAT 58.006 37.500 0.00 0.00 0.00 1.40
4116 4505 5.420725 ACTGGTGCTCACATGATAGTTTA 57.579 39.130 0.00 0.00 0.00 2.01
4117 4506 4.292186 ACTGGTGCTCACATGATAGTTT 57.708 40.909 0.00 0.00 0.00 2.66
4118 4507 3.988976 ACTGGTGCTCACATGATAGTT 57.011 42.857 0.00 0.00 0.00 2.24
4119 4508 5.129320 TGAATACTGGTGCTCACATGATAGT 59.871 40.000 0.00 0.00 0.00 2.12
4120 4509 5.604565 TGAATACTGGTGCTCACATGATAG 58.395 41.667 0.00 0.00 0.00 2.08
4121 4510 5.612725 TGAATACTGGTGCTCACATGATA 57.387 39.130 0.00 0.00 0.00 2.15
4122 4511 4.492494 TGAATACTGGTGCTCACATGAT 57.508 40.909 0.00 0.00 0.00 2.45
4123 4512 3.979101 TGAATACTGGTGCTCACATGA 57.021 42.857 0.00 0.00 0.00 3.07
4124 4513 3.181503 GCTTGAATACTGGTGCTCACATG 60.182 47.826 2.21 0.00 0.00 3.21
4125 4514 3.012518 GCTTGAATACTGGTGCTCACAT 58.987 45.455 2.21 0.00 0.00 3.21
4126 4515 2.426522 GCTTGAATACTGGTGCTCACA 58.573 47.619 2.21 0.00 0.00 3.58
4127 4516 1.740025 GGCTTGAATACTGGTGCTCAC 59.260 52.381 0.00 0.00 0.00 3.51
4128 4517 1.350684 TGGCTTGAATACTGGTGCTCA 59.649 47.619 0.00 0.00 0.00 4.26
4129 4518 2.113860 TGGCTTGAATACTGGTGCTC 57.886 50.000 0.00 0.00 0.00 4.26
4130 4519 2.025981 TCATGGCTTGAATACTGGTGCT 60.026 45.455 0.00 0.00 0.00 4.40
4131 4520 2.368439 TCATGGCTTGAATACTGGTGC 58.632 47.619 0.00 0.00 0.00 5.01
4132 4521 4.458397 AGATCATGGCTTGAATACTGGTG 58.542 43.478 7.20 0.00 38.03 4.17
4133 4522 4.785346 AGATCATGGCTTGAATACTGGT 57.215 40.909 7.20 0.00 38.03 4.00
4134 4523 4.212847 CGAAGATCATGGCTTGAATACTGG 59.787 45.833 7.20 1.56 38.03 4.00
4135 4524 4.319333 GCGAAGATCATGGCTTGAATACTG 60.319 45.833 7.20 0.00 38.03 2.74
4136 4525 3.812053 GCGAAGATCATGGCTTGAATACT 59.188 43.478 7.20 5.03 38.03 2.12
4137 4526 3.058639 GGCGAAGATCATGGCTTGAATAC 60.059 47.826 7.20 2.96 38.03 1.89
4138 4527 3.141398 GGCGAAGATCATGGCTTGAATA 58.859 45.455 7.20 0.00 38.03 1.75
4139 4528 1.952296 GGCGAAGATCATGGCTTGAAT 59.048 47.619 7.20 0.00 38.03 2.57
4140 4529 1.382522 GGCGAAGATCATGGCTTGAA 58.617 50.000 7.20 0.00 38.03 2.69
4141 4530 0.811219 CGGCGAAGATCATGGCTTGA 60.811 55.000 0.00 5.47 39.12 3.02
4142 4531 0.811219 TCGGCGAAGATCATGGCTTG 60.811 55.000 7.35 0.00 0.00 4.01
4143 4532 0.811616 GTCGGCGAAGATCATGGCTT 60.812 55.000 12.92 0.00 0.00 4.35
4144 4533 1.227380 GTCGGCGAAGATCATGGCT 60.227 57.895 12.92 0.00 0.00 4.75
4145 4534 2.247437 GGTCGGCGAAGATCATGGC 61.247 63.158 12.92 0.00 0.00 4.40
4146 4535 0.598680 GAGGTCGGCGAAGATCATGG 60.599 60.000 12.92 0.00 0.00 3.66
4147 4536 0.103026 TGAGGTCGGCGAAGATCATG 59.897 55.000 12.92 0.00 0.00 3.07
4148 4537 1.043816 ATGAGGTCGGCGAAGATCAT 58.956 50.000 20.47 20.47 0.00 2.45
4149 4538 0.103026 CATGAGGTCGGCGAAGATCA 59.897 55.000 12.92 16.42 0.00 2.92
4150 4539 0.103208 ACATGAGGTCGGCGAAGATC 59.897 55.000 12.92 10.76 0.00 2.75
4151 4540 1.399714 TACATGAGGTCGGCGAAGAT 58.600 50.000 12.92 0.00 0.00 2.40
4152 4541 1.179152 TTACATGAGGTCGGCGAAGA 58.821 50.000 12.92 0.00 0.00 2.87
4153 4542 1.927174 CTTTACATGAGGTCGGCGAAG 59.073 52.381 12.92 0.00 0.00 3.79
4154 4543 1.546923 TCTTTACATGAGGTCGGCGAA 59.453 47.619 12.92 0.00 0.00 4.70
4155 4544 1.135199 GTCTTTACATGAGGTCGGCGA 60.135 52.381 4.99 4.99 0.00 5.54
4156 4545 1.135083 AGTCTTTACATGAGGTCGGCG 60.135 52.381 0.00 0.00 0.00 6.46
4157 4546 2.271800 CAGTCTTTACATGAGGTCGGC 58.728 52.381 0.00 0.00 0.00 5.54
4158 4547 3.512680 GACAGTCTTTACATGAGGTCGG 58.487 50.000 0.00 0.00 0.00 4.79
4159 4548 3.056821 TGGACAGTCTTTACATGAGGTCG 60.057 47.826 0.00 0.00 0.00 4.79
4160 4549 4.246458 GTGGACAGTCTTTACATGAGGTC 58.754 47.826 0.00 0.00 0.00 3.85
4161 4550 3.646162 TGTGGACAGTCTTTACATGAGGT 59.354 43.478 0.00 0.00 0.00 3.85
4162 4551 4.271696 TGTGGACAGTCTTTACATGAGG 57.728 45.455 0.00 0.00 0.00 3.86
4163 4552 5.597813 GTTGTGGACAGTCTTTACATGAG 57.402 43.478 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.