Multiple sequence alignment - TraesCS4D01G334400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G334400 chr4D 100.000 3425 0 0 1 3425 491719958 491723382 0.000000e+00 6325.0
1 TraesCS4D01G334400 chr5A 89.127 1729 85 48 1020 2736 672338320 672336683 0.000000e+00 2056.0
2 TraesCS4D01G334400 chr5A 85.642 397 36 15 1 386 672339673 672339287 6.890000e-107 398.0
3 TraesCS4D01G334400 chr5A 89.068 311 14 10 596 898 672339025 672338727 5.400000e-98 368.0
4 TraesCS4D01G334400 chr5A 80.516 426 39 18 2468 2872 672335316 672334914 1.560000e-73 287.0
5 TraesCS4D01G334400 chr5A 78.366 453 29 25 3013 3425 672335096 672334673 2.660000e-56 230.0
6 TraesCS4D01G334400 chr5A 80.000 115 7 10 2955 3054 672336798 672336685 1.710000e-08 71.3
7 TraesCS4D01G334400 chr4B 89.804 1432 82 26 1288 2684 630638427 630639829 0.000000e+00 1777.0
8 TraesCS4D01G334400 chr4B 85.362 649 54 23 663 1290 630637840 630638468 4.820000e-178 634.0
9 TraesCS4D01G334400 chr4B 93.617 282 10 3 2716 2989 630639820 630640101 6.840000e-112 414.0
10 TraesCS4D01G334400 chr4B 87.616 323 25 8 57 379 630637394 630637701 9.040000e-96 361.0
11 TraesCS4D01G334400 chr4B 81.457 151 9 11 2955 3088 630641653 630641801 4.670000e-19 106.0
12 TraesCS4D01G334400 chr4B 96.667 60 1 1 3013 3072 630640185 630640243 7.820000e-17 99.0
13 TraesCS4D01G334400 chr4B 92.647 68 3 1 2612 2679 630640066 630640131 2.810000e-16 97.1
14 TraesCS4D01G334400 chr4B 79.605 152 12 10 3280 3425 630642415 630642553 1.310000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G334400 chr4D 491719958 491723382 3424 False 6325.000000 6325 100.000000 1 3425 1 chr4D.!!$F1 3424
1 TraesCS4D01G334400 chr5A 672334673 672339673 5000 True 568.383333 2056 83.786500 1 3425 6 chr5A.!!$R1 3424
2 TraesCS4D01G334400 chr4B 630637394 630642553 5159 False 447.462500 1777 88.346875 57 3425 8 chr4B.!!$F1 3368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 1048 0.407918 TTCCATCTCCCCCAAACACC 59.592 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2904 4512 0.106268 TTTTCCACTGCAGGGCAAGA 60.106 50.0 19.93 3.69 38.41 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 97 6.549952 CAAAATGCTCTTAGAATCAGACACC 58.450 40.000 0.00 0.00 0.00 4.16
96 99 3.089284 TGCTCTTAGAATCAGACACCGA 58.911 45.455 0.00 0.00 0.00 4.69
100 103 4.998788 TCTTAGAATCAGACACCGACATG 58.001 43.478 0.00 0.00 0.00 3.21
108 111 2.227968 GACACCGACATGTCTTGCGC 62.228 60.000 22.95 0.00 44.71 6.09
186 189 5.746990 AACTAACTAGCTGATGTTCCTGT 57.253 39.130 0.00 0.00 0.00 4.00
187 190 5.331876 ACTAACTAGCTGATGTTCCTGTC 57.668 43.478 0.00 0.00 0.00 3.51
188 191 5.020132 ACTAACTAGCTGATGTTCCTGTCT 58.980 41.667 0.00 0.00 0.00 3.41
189 192 3.883830 ACTAGCTGATGTTCCTGTCTG 57.116 47.619 0.00 0.00 0.00 3.51
230 235 6.771076 TGTCATCACACGCTTAACATTATTC 58.229 36.000 0.00 0.00 0.00 1.75
239 244 6.195244 CACGCTTAACATTATTCTTGCATGAC 59.805 38.462 1.02 0.00 0.00 3.06
246 251 7.400599 ACATTATTCTTGCATGACTTGATGT 57.599 32.000 1.02 8.55 0.00 3.06
247 252 7.255569 ACATTATTCTTGCATGACTTGATGTG 58.744 34.615 15.34 8.33 0.00 3.21
265 276 5.297527 TGATGTGTGATGGATGCTGTAATTC 59.702 40.000 0.00 0.00 0.00 2.17
290 301 2.362077 AGTGCAAGGTTTGTCACATTCC 59.638 45.455 14.22 0.00 38.93 3.01
327 338 3.254166 CAGTTCACTGTCATCAAAAGGGG 59.746 47.826 0.00 0.00 39.09 4.79
333 344 1.004745 TGTCATCAAAAGGGGCCTCTC 59.995 52.381 5.00 0.00 0.00 3.20
386 400 5.584649 TCATCAAAGCTCCAGTAATTTACCG 59.415 40.000 2.92 0.00 0.00 4.02
388 402 2.327200 AGCTCCAGTAATTTACCGCC 57.673 50.000 2.92 0.00 0.00 6.13
390 404 2.238898 AGCTCCAGTAATTTACCGCCTT 59.761 45.455 2.92 0.00 0.00 4.35
391 405 2.354821 GCTCCAGTAATTTACCGCCTTG 59.645 50.000 2.92 0.00 0.00 3.61
393 407 4.007659 CTCCAGTAATTTACCGCCTTGTT 58.992 43.478 2.92 0.00 0.00 2.83
394 408 4.004982 TCCAGTAATTTACCGCCTTGTTC 58.995 43.478 2.92 0.00 0.00 3.18
395 409 3.754323 CCAGTAATTTACCGCCTTGTTCA 59.246 43.478 2.92 0.00 0.00 3.18
397 411 3.754850 AGTAATTTACCGCCTTGTTCACC 59.245 43.478 2.92 0.00 0.00 4.02
398 412 2.579410 ATTTACCGCCTTGTTCACCT 57.421 45.000 0.00 0.00 0.00 4.00
399 413 1.886886 TTTACCGCCTTGTTCACCTC 58.113 50.000 0.00 0.00 0.00 3.85
400 414 0.759959 TTACCGCCTTGTTCACCTCA 59.240 50.000 0.00 0.00 0.00 3.86
404 418 1.001378 CCGCCTTGTTCACCTCAAAAG 60.001 52.381 0.00 0.00 0.00 2.27
406 420 2.357637 CGCCTTGTTCACCTCAAAAGAA 59.642 45.455 0.00 0.00 0.00 2.52
409 423 5.175127 GCCTTGTTCACCTCAAAAGAAAAA 58.825 37.500 0.00 0.00 0.00 1.94
431 445 5.669164 AAAAACACCACCTTGTATGTTGT 57.331 34.783 0.00 0.00 35.51 3.32
432 446 4.911514 AAACACCACCTTGTATGTTGTC 57.088 40.909 0.00 0.00 35.51 3.18
433 447 3.569194 ACACCACCTTGTATGTTGTCA 57.431 42.857 0.00 0.00 0.00 3.58
434 448 4.098914 ACACCACCTTGTATGTTGTCAT 57.901 40.909 0.00 0.00 38.00 3.06
435 449 5.235850 ACACCACCTTGTATGTTGTCATA 57.764 39.130 0.00 0.00 35.70 2.15
487 549 9.850628 ACATCATGTGTATTGATTTTCTTCTTG 57.149 29.630 0.00 0.00 39.91 3.02
488 550 9.850628 CATCATGTGTATTGATTTTCTTCTTGT 57.149 29.630 0.00 0.00 31.50 3.16
512 574 8.590204 TGTAAATAGTTACTTCCTGACATGTGA 58.410 33.333 13.68 0.00 40.35 3.58
532 600 9.499585 CATGTGATACAAGAAAGCTAAATTCTG 57.500 33.333 0.00 0.00 37.22 3.02
533 601 8.621532 TGTGATACAAGAAAGCTAAATTCTGT 57.378 30.769 0.00 4.19 37.22 3.41
535 603 9.974750 GTGATACAAGAAAGCTAAATTCTGTAC 57.025 33.333 0.00 0.00 37.22 2.90
536 604 9.162764 TGATACAAGAAAGCTAAATTCTGTACC 57.837 33.333 0.00 0.00 37.22 3.34
537 605 6.819397 ACAAGAAAGCTAAATTCTGTACCC 57.181 37.500 0.00 0.00 37.22 3.69
538 606 5.411669 ACAAGAAAGCTAAATTCTGTACCCG 59.588 40.000 0.00 0.00 37.22 5.28
539 607 3.939592 AGAAAGCTAAATTCTGTACCCGC 59.060 43.478 0.00 0.00 35.85 6.13
541 609 3.343941 AGCTAAATTCTGTACCCGCAA 57.656 42.857 0.00 0.00 0.00 4.85
542 610 3.681593 AGCTAAATTCTGTACCCGCAAA 58.318 40.909 0.00 0.00 0.00 3.68
543 611 4.076394 AGCTAAATTCTGTACCCGCAAAA 58.924 39.130 0.00 0.00 0.00 2.44
544 612 4.521256 AGCTAAATTCTGTACCCGCAAAAA 59.479 37.500 0.00 0.00 0.00 1.94
584 652 9.406828 CTACACAGAAAAAGGTTTATTTTAGGC 57.593 33.333 0.00 0.00 32.20 3.93
585 653 7.214381 ACACAGAAAAAGGTTTATTTTAGGCC 58.786 34.615 0.00 0.00 32.20 5.19
586 654 7.147637 ACACAGAAAAAGGTTTATTTTAGGCCA 60.148 33.333 5.01 0.00 32.20 5.36
587 655 7.713073 CACAGAAAAAGGTTTATTTTAGGCCAA 59.287 33.333 5.01 0.00 32.20 4.52
588 656 8.268605 ACAGAAAAAGGTTTATTTTAGGCCAAA 58.731 29.630 5.01 0.00 32.20 3.28
655 755 2.036098 CCACAGGCCTGCATGGAA 59.964 61.111 30.17 0.00 38.35 3.53
656 756 2.345760 CCACAGGCCTGCATGGAAC 61.346 63.158 30.17 0.00 38.35 3.62
661 761 3.204827 GCCTGCATGGAACGCGAT 61.205 61.111 15.93 0.00 38.35 4.58
676 776 2.408835 GATGCAATTCCCGCCACG 59.591 61.111 0.00 0.00 0.00 4.94
855 966 2.348998 CCAACGGCAGCTTCTCCT 59.651 61.111 0.00 0.00 0.00 3.69
857 968 2.097038 CAACGGCAGCTTCTCCTCG 61.097 63.158 0.00 0.00 0.00 4.63
894 1007 3.629282 GCCCCCTTCACTACTACTCCTAA 60.629 52.174 0.00 0.00 0.00 2.69
918 1033 2.046892 GCTGCCGCTTCTCTTCCA 60.047 61.111 0.00 0.00 0.00 3.53
928 1043 2.200081 CTTCTCTTCCATCTCCCCCAA 58.800 52.381 0.00 0.00 0.00 4.12
929 1044 2.359376 TCTCTTCCATCTCCCCCAAA 57.641 50.000 0.00 0.00 0.00 3.28
931 1046 1.635487 CTCTTCCATCTCCCCCAAACA 59.365 52.381 0.00 0.00 0.00 2.83
932 1047 1.354368 TCTTCCATCTCCCCCAAACAC 59.646 52.381 0.00 0.00 0.00 3.32
933 1048 0.407918 TTCCATCTCCCCCAAACACC 59.592 55.000 0.00 0.00 0.00 4.16
934 1049 1.000359 CCATCTCCCCCAAACACCC 60.000 63.158 0.00 0.00 0.00 4.61
935 1050 1.773635 CATCTCCCCCAAACACCCA 59.226 57.895 0.00 0.00 0.00 4.51
936 1051 0.611896 CATCTCCCCCAAACACCCAC 60.612 60.000 0.00 0.00 0.00 4.61
937 1052 1.800229 ATCTCCCCCAAACACCCACC 61.800 60.000 0.00 0.00 0.00 4.61
939 1054 4.986708 CCCCCAAACACCCACCCG 62.987 72.222 0.00 0.00 0.00 5.28
941 1056 4.596585 CCCAAACACCCACCCGCT 62.597 66.667 0.00 0.00 0.00 5.52
942 1057 2.520741 CCAAACACCCACCCGCTT 60.521 61.111 0.00 0.00 0.00 4.68
943 1058 2.561037 CCAAACACCCACCCGCTTC 61.561 63.158 0.00 0.00 0.00 3.86
944 1059 1.528309 CAAACACCCACCCGCTTCT 60.528 57.895 0.00 0.00 0.00 2.85
1187 1595 0.902531 GTTCCTTGTCCCATCGAGGA 59.097 55.000 0.00 0.00 43.83 3.71
1202 1610 2.028130 CGAGGATTACTGCCAGTCTCT 58.972 52.381 0.00 0.00 0.00 3.10
1206 1614 3.052944 AGGATTACTGCCAGTCTCTCTCT 60.053 47.826 0.00 0.00 0.00 3.10
1209 1617 2.128771 ACTGCCAGTCTCTCTCTCTC 57.871 55.000 0.00 0.00 0.00 3.20
1231 1639 0.462581 TGATCGGCTGCTGTTGATCC 60.463 55.000 8.55 0.97 37.11 3.36
1234 1642 3.512516 GGCTGCTGTTGATCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
1250 1658 1.482621 CGCCTCGTGATTGACCGATG 61.483 60.000 0.00 0.00 31.90 3.84
1255 1663 2.797156 CTCGTGATTGACCGATGGATTC 59.203 50.000 0.00 0.00 31.90 2.52
1262 1670 3.736483 CCGATGGATTCCGGCTTG 58.264 61.111 0.00 0.00 39.22 4.01
1269 1677 3.591196 TGGATTCCGGCTTGATTTTTG 57.409 42.857 0.00 0.00 0.00 2.44
1271 1679 3.056891 TGGATTCCGGCTTGATTTTTGTC 60.057 43.478 0.00 0.00 0.00 3.18
1272 1680 3.193479 GGATTCCGGCTTGATTTTTGTCT 59.807 43.478 0.00 0.00 0.00 3.41
1273 1681 3.641437 TTCCGGCTTGATTTTTGTCTG 57.359 42.857 0.00 0.00 0.00 3.51
1274 1682 1.885887 TCCGGCTTGATTTTTGTCTGG 59.114 47.619 0.00 0.00 0.00 3.86
1276 1685 2.035832 CCGGCTTGATTTTTGTCTGGTT 59.964 45.455 0.00 0.00 0.00 3.67
1285 1694 7.475137 TGATTTTTGTCTGGTTAATTAGGGG 57.525 36.000 0.00 0.00 0.00 4.79
1295 1704 4.102054 TGGTTAATTAGGGGTTCGATCTCC 59.898 45.833 4.04 4.04 0.00 3.71
1389 1800 1.957695 GTTCGACCCCAACGTGACC 60.958 63.158 0.00 0.00 0.00 4.02
1398 1809 1.800315 CAACGTGACCGCCTACGAG 60.800 63.158 9.88 0.41 43.93 4.18
1440 1857 4.200283 GAGGCCGCGACAGAGGAG 62.200 72.222 8.23 0.00 39.96 3.69
1512 1929 2.813474 CCCGAGTGCGCGAAATCA 60.813 61.111 15.81 0.00 35.83 2.57
1593 2010 1.060622 CGAGGACTGCTACGACGAC 59.939 63.158 0.00 0.00 0.00 4.34
1594 2011 1.060622 GAGGACTGCTACGACGACG 59.939 63.158 5.58 5.58 45.75 5.12
1595 2012 1.357258 GAGGACTGCTACGACGACGA 61.357 60.000 15.32 0.00 42.66 4.20
1620 2037 2.096860 CGACGATGAGTACGATGACGAT 60.097 50.000 0.00 0.00 42.66 3.73
1632 2049 1.063616 GATGACGATGAGGACGACGAA 59.936 52.381 0.00 0.00 34.70 3.85
1689 2112 2.559840 GACGACGACGAGGAGCAA 59.440 61.111 15.32 0.00 42.66 3.91
1698 2121 4.416738 GAGGAGCAAGGCGGGCTT 62.417 66.667 11.46 11.46 42.78 4.35
1815 2268 3.745803 GCAGCAGCTGAGGCAACC 61.746 66.667 27.39 2.11 41.70 3.77
1816 2269 3.429141 CAGCAGCTGAGGCAACCG 61.429 66.667 20.43 0.00 41.70 4.44
1866 2322 3.565214 TGGAAGGACGCCAAGCCA 61.565 61.111 0.00 0.00 31.13 4.75
1903 2359 4.019860 CCAAGGATTCAGAGAAGGAGAACA 60.020 45.833 0.00 0.00 0.00 3.18
1905 2361 5.612725 AGGATTCAGAGAAGGAGAACATC 57.387 43.478 0.00 0.00 0.00 3.06
1910 2366 3.441922 TCAGAGAAGGAGAACATCGTCAG 59.558 47.826 0.00 0.00 0.00 3.51
1921 2377 1.077357 ATCGTCAGGCTCTCCGACT 60.077 57.895 2.27 0.00 35.33 4.18
1944 2403 0.105964 CGACGGCCCCTGATATGAAA 59.894 55.000 0.00 0.00 0.00 2.69
1945 2404 1.474320 CGACGGCCCCTGATATGAAAA 60.474 52.381 0.00 0.00 0.00 2.29
2243 2702 0.670546 GCTTACTGGAACTGCAGCGA 60.671 55.000 15.27 0.00 29.96 4.93
2244 2703 2.009042 GCTTACTGGAACTGCAGCGAT 61.009 52.381 15.27 0.00 29.96 4.58
2325 2784 1.064003 TTGGGCAGGTGAGCTCTTAA 58.936 50.000 16.19 0.00 35.52 1.85
2326 2785 1.289160 TGGGCAGGTGAGCTCTTAAT 58.711 50.000 16.19 0.00 35.52 1.40
2327 2786 1.635487 TGGGCAGGTGAGCTCTTAATT 59.365 47.619 16.19 0.00 35.52 1.40
2328 2787 2.843730 TGGGCAGGTGAGCTCTTAATTA 59.156 45.455 16.19 0.00 35.52 1.40
2329 2788 3.118261 TGGGCAGGTGAGCTCTTAATTAG 60.118 47.826 16.19 0.00 35.52 1.73
2330 2789 2.875317 GGCAGGTGAGCTCTTAATTAGC 59.125 50.000 16.19 9.49 40.40 3.09
2357 2816 3.366273 GCGATTTGAGCTTTGGTTGATGA 60.366 43.478 0.00 0.00 0.00 2.92
2358 2817 4.676196 GCGATTTGAGCTTTGGTTGATGAT 60.676 41.667 0.00 0.00 0.00 2.45
2359 2818 4.796830 CGATTTGAGCTTTGGTTGATGATG 59.203 41.667 0.00 0.00 0.00 3.07
2360 2819 3.581024 TTGAGCTTTGGTTGATGATGC 57.419 42.857 0.00 0.00 0.00 3.91
2361 2820 2.516906 TGAGCTTTGGTTGATGATGCA 58.483 42.857 0.00 0.00 0.00 3.96
2362 2821 3.093814 TGAGCTTTGGTTGATGATGCAT 58.906 40.909 0.00 0.00 0.00 3.96
2366 2825 4.933400 AGCTTTGGTTGATGATGCATTTTC 59.067 37.500 0.00 1.50 0.00 2.29
2368 2827 4.886496 TTGGTTGATGATGCATTTTCCA 57.114 36.364 0.00 1.96 0.00 3.53
2398 2861 2.585330 TGTGTGGTGCTCATGATGTTT 58.415 42.857 0.00 0.00 0.00 2.83
2439 2902 3.055963 TGGCATGATGAAAATGGTGAACC 60.056 43.478 0.00 0.00 0.00 3.62
2494 2957 8.320617 AGAAAGAAGAGCTGTGAATTAAGAGAT 58.679 33.333 0.00 0.00 0.00 2.75
2632 3407 5.918426 TTGTGTGGCATTGTCAATATGAT 57.082 34.783 0.00 0.00 0.00 2.45
2633 3408 5.251601 TGTGTGGCATTGTCAATATGATG 57.748 39.130 0.00 0.00 0.00 3.07
2693 3511 7.561021 TTTTGTACTACTGCATTTGAGTTCA 57.439 32.000 0.00 0.00 0.00 3.18
2694 3512 6.785488 TTGTACTACTGCATTTGAGTTCAG 57.215 37.500 0.00 0.00 0.00 3.02
2714 3532 4.635765 TCAGTTTCACCTTTCTGAACTGTG 59.364 41.667 12.53 10.64 34.42 3.66
2715 3533 4.635765 CAGTTTCACCTTTCTGAACTGTGA 59.364 41.667 14.00 14.00 34.38 3.58
2724 3542 1.227943 TGAACTGTGACTGCCTGCC 60.228 57.895 0.00 0.00 0.00 4.85
2726 3544 1.228063 AACTGTGACTGCCTGCCTG 60.228 57.895 0.00 0.00 0.00 4.85
2727 3545 3.054503 CTGTGACTGCCTGCCTGC 61.055 66.667 0.00 0.00 0.00 4.85
2728 3546 3.548306 CTGTGACTGCCTGCCTGCT 62.548 63.158 0.00 0.00 0.00 4.24
2729 3547 2.282040 GTGACTGCCTGCCTGCTT 60.282 61.111 0.00 0.00 0.00 3.91
2734 3552 0.468771 ACTGCCTGCCTGCTTTTCTT 60.469 50.000 0.00 0.00 0.00 2.52
2735 3553 0.243095 CTGCCTGCCTGCTTTTCTTC 59.757 55.000 0.00 0.00 0.00 2.87
2737 3555 0.964700 GCCTGCCTGCTTTTCTTCTT 59.035 50.000 0.00 0.00 0.00 2.52
2738 3556 1.067985 GCCTGCCTGCTTTTCTTCTTC 60.068 52.381 0.00 0.00 0.00 2.87
2739 3557 2.512705 CCTGCCTGCTTTTCTTCTTCT 58.487 47.619 0.00 0.00 0.00 2.85
2740 3558 2.228343 CCTGCCTGCTTTTCTTCTTCTG 59.772 50.000 0.00 0.00 0.00 3.02
2743 4350 3.316308 TGCCTGCTTTTCTTCTTCTGAAC 59.684 43.478 0.00 0.00 0.00 3.18
2744 4351 3.567585 GCCTGCTTTTCTTCTTCTGAACT 59.432 43.478 0.00 0.00 0.00 3.01
2751 4358 8.519526 TGCTTTTCTTCTTCTGAACTTTTGTTA 58.480 29.630 0.00 0.00 43.66 2.41
2756 4364 7.865707 TCTTCTTCTGAACTTTTGTTATCTGC 58.134 34.615 0.00 0.00 43.66 4.26
2760 4368 4.821260 TCTGAACTTTTGTTATCTGCAGCA 59.179 37.500 9.47 0.00 43.66 4.41
2766 4374 2.099141 TGTTATCTGCAGCACCTCAC 57.901 50.000 9.47 0.24 0.00 3.51
2768 4376 2.224499 TGTTATCTGCAGCACCTCACAA 60.224 45.455 9.47 0.00 0.00 3.33
2769 4377 2.099141 TATCTGCAGCACCTCACAAC 57.901 50.000 9.47 0.00 0.00 3.32
2770 4378 0.109153 ATCTGCAGCACCTCACAACA 59.891 50.000 9.47 0.00 0.00 3.33
2771 4379 0.815213 TCTGCAGCACCTCACAACAC 60.815 55.000 9.47 0.00 0.00 3.32
2772 4380 0.816825 CTGCAGCACCTCACAACACT 60.817 55.000 0.00 0.00 0.00 3.55
2773 4381 0.467804 TGCAGCACCTCACAACACTA 59.532 50.000 0.00 0.00 0.00 2.74
2775 4383 1.734465 GCAGCACCTCACAACACTATC 59.266 52.381 0.00 0.00 0.00 2.08
2776 4384 2.613977 GCAGCACCTCACAACACTATCT 60.614 50.000 0.00 0.00 0.00 1.98
2777 4385 3.668447 CAGCACCTCACAACACTATCTT 58.332 45.455 0.00 0.00 0.00 2.40
2778 4386 3.434641 CAGCACCTCACAACACTATCTTG 59.565 47.826 0.00 0.00 0.00 3.02
2779 4387 2.744202 GCACCTCACAACACTATCTTGG 59.256 50.000 0.00 0.00 0.00 3.61
2781 4389 4.248859 CACCTCACAACACTATCTTGGAG 58.751 47.826 0.00 0.00 0.00 3.86
2782 4390 3.261897 ACCTCACAACACTATCTTGGAGG 59.738 47.826 0.00 0.00 39.53 4.30
2783 4391 3.265791 CTCACAACACTATCTTGGAGGC 58.734 50.000 0.00 0.00 0.00 4.70
2784 4392 2.906389 TCACAACACTATCTTGGAGGCT 59.094 45.455 0.00 0.00 0.00 4.58
2785 4393 3.327757 TCACAACACTATCTTGGAGGCTT 59.672 43.478 0.00 0.00 0.00 4.35
2787 4395 5.012664 TCACAACACTATCTTGGAGGCTTAA 59.987 40.000 0.00 0.00 0.00 1.85
2788 4396 5.352569 CACAACACTATCTTGGAGGCTTAAG 59.647 44.000 0.00 0.00 0.00 1.85
2789 4397 5.248477 ACAACACTATCTTGGAGGCTTAAGA 59.752 40.000 6.67 14.77 37.34 2.10
2790 4398 6.069963 ACAACACTATCTTGGAGGCTTAAGAT 60.070 38.462 22.90 22.90 43.80 2.40
2791 4399 6.567602 ACACTATCTTGGAGGCTTAAGATT 57.432 37.500 23.88 11.27 42.12 2.40
2793 4401 8.090788 ACACTATCTTGGAGGCTTAAGATTAA 57.909 34.615 23.88 12.38 42.12 1.40
2794 4402 7.988028 ACACTATCTTGGAGGCTTAAGATTAAC 59.012 37.037 23.88 0.00 42.12 2.01
2795 4403 7.987458 CACTATCTTGGAGGCTTAAGATTAACA 59.013 37.037 23.88 11.63 42.12 2.41
2796 4404 8.718656 ACTATCTTGGAGGCTTAAGATTAACAT 58.281 33.333 23.88 9.72 42.12 2.71
2798 4406 6.957631 TCTTGGAGGCTTAAGATTAACATCA 58.042 36.000 6.67 0.00 0.00 3.07
2799 4407 7.577303 TCTTGGAGGCTTAAGATTAACATCAT 58.423 34.615 6.67 0.00 0.00 2.45
2800 4408 7.500227 TCTTGGAGGCTTAAGATTAACATCATG 59.500 37.037 6.67 0.00 0.00 3.07
2801 4409 6.899089 TGGAGGCTTAAGATTAACATCATGA 58.101 36.000 6.67 0.00 0.00 3.07
2802 4410 7.520798 TGGAGGCTTAAGATTAACATCATGAT 58.479 34.615 6.67 1.18 0.00 2.45
2803 4411 8.659527 TGGAGGCTTAAGATTAACATCATGATA 58.340 33.333 8.15 0.00 0.00 2.15
2804 4412 9.507329 GGAGGCTTAAGATTAACATCATGATAA 57.493 33.333 8.15 0.00 0.00 1.75
2819 4427 9.159364 ACATCATGATAATCTGTACATACATGC 57.841 33.333 8.15 0.00 35.36 4.06
2820 4428 9.158233 CATCATGATAATCTGTACATACATGCA 57.842 33.333 8.15 0.00 35.36 3.96
2821 4429 9.729281 ATCATGATAATCTGTACATACATGCAA 57.271 29.630 6.36 0.00 35.36 4.08
2823 4431 7.425577 TGATAATCTGTACATACATGCAAGC 57.574 36.000 0.00 0.00 35.36 4.01
2824 4432 7.219322 TGATAATCTGTACATACATGCAAGCT 58.781 34.615 0.00 0.00 35.36 3.74
2825 4433 5.998454 AATCTGTACATACATGCAAGCTC 57.002 39.130 0.00 0.00 35.36 4.09
2826 4434 4.743057 TCTGTACATACATGCAAGCTCT 57.257 40.909 0.00 0.00 35.36 4.09
2827 4435 4.436332 TCTGTACATACATGCAAGCTCTG 58.564 43.478 0.00 0.00 35.36 3.35
2828 4436 4.081476 TCTGTACATACATGCAAGCTCTGT 60.081 41.667 0.00 0.00 35.36 3.41
2830 4438 5.351458 TGTACATACATGCAAGCTCTGTAG 58.649 41.667 0.00 0.00 0.00 2.74
2831 4439 7.927704 CTGTACATACATGCAAGCTCTGTAGC 61.928 46.154 0.00 0.00 41.36 3.58
2842 4450 2.964740 GCTCTGTAGCTCACATGAACA 58.035 47.619 0.00 0.00 45.85 3.18
2844 4452 3.309138 GCTCTGTAGCTCACATGAACATG 59.691 47.826 12.43 12.43 45.85 3.21
2846 4454 3.515104 TCTGTAGCTCACATGAACATGGA 59.485 43.478 17.25 11.08 42.91 3.41
2847 4455 3.599343 TGTAGCTCACATGAACATGGAC 58.401 45.455 17.25 5.47 42.91 4.02
2848 4456 2.119801 AGCTCACATGAACATGGACC 57.880 50.000 17.25 5.52 42.91 4.46
2850 4458 2.840038 AGCTCACATGAACATGGACCTA 59.160 45.455 17.25 0.10 42.91 3.08
2851 4459 3.118482 AGCTCACATGAACATGGACCTAG 60.118 47.826 17.25 8.82 42.91 3.02
2852 4460 3.801698 CTCACATGAACATGGACCTAGG 58.198 50.000 17.25 7.41 42.91 3.02
2856 4464 5.249622 TCACATGAACATGGACCTAGGTTTA 59.750 40.000 17.53 8.74 42.91 2.01
2857 4465 6.069673 TCACATGAACATGGACCTAGGTTTAT 60.070 38.462 17.53 10.80 42.91 1.40
2858 4466 6.260936 CACATGAACATGGACCTAGGTTTATC 59.739 42.308 17.53 9.56 42.91 1.75
2862 4470 8.096621 TGAACATGGACCTAGGTTTATCATTA 57.903 34.615 17.53 0.00 0.00 1.90
2865 4473 7.867921 ACATGGACCTAGGTTTATCATTAACA 58.132 34.615 17.53 3.49 0.00 2.41
2866 4474 8.502738 ACATGGACCTAGGTTTATCATTAACAT 58.497 33.333 17.53 5.53 0.00 2.71
2873 4481 9.725019 CCTAGGTTTATCATTAACATATGAGCA 57.275 33.333 10.38 0.00 37.91 4.26
2876 4484 9.851686 AGGTTTATCATTAACATATGAGCAGAA 57.148 29.630 10.38 0.00 37.91 3.02
2883 4491 9.617523 TCATTAACATATGAGCAGAAGATTTCA 57.382 29.630 10.38 0.00 31.19 2.69
2885 4493 9.842775 ATTAACATATGAGCAGAAGATTTCAGA 57.157 29.630 10.38 0.00 0.00 3.27
2886 4494 9.842775 TTAACATATGAGCAGAAGATTTCAGAT 57.157 29.630 10.38 0.00 0.00 2.90
2897 4505 8.727910 GCAGAAGATTTCAGATAATATCATGCA 58.272 33.333 2.84 0.00 0.00 3.96
2906 4514 8.969260 TCAGATAATATCATGCAAACTTGTCT 57.031 30.769 2.84 0.00 0.00 3.41
2907 4515 9.399797 TCAGATAATATCATGCAAACTTGTCTT 57.600 29.630 2.84 0.00 0.00 3.01
2908 4516 9.447040 CAGATAATATCATGCAAACTTGTCTTG 57.553 33.333 2.84 0.00 0.00 3.02
2914 4522 0.598419 GCAAACTTGTCTTGCCCTGC 60.598 55.000 0.00 0.00 42.74 4.85
2915 4523 0.746063 CAAACTTGTCTTGCCCTGCA 59.254 50.000 0.00 0.00 36.47 4.41
2916 4524 1.035139 AAACTTGTCTTGCCCTGCAG 58.965 50.000 6.78 6.78 40.61 4.41
2917 4525 0.106519 AACTTGTCTTGCCCTGCAGT 60.107 50.000 13.81 0.00 40.61 4.40
2918 4526 0.820891 ACTTGTCTTGCCCTGCAGTG 60.821 55.000 13.81 1.33 40.61 3.66
2919 4527 1.521450 CTTGTCTTGCCCTGCAGTGG 61.521 60.000 13.81 14.43 40.61 4.00
2920 4528 1.993701 TTGTCTTGCCCTGCAGTGGA 61.994 55.000 21.37 5.83 40.61 4.02
2921 4529 1.228245 GTCTTGCCCTGCAGTGGAA 60.228 57.895 21.37 13.43 40.61 3.53
2922 4530 0.823356 GTCTTGCCCTGCAGTGGAAA 60.823 55.000 21.37 16.89 40.61 3.13
2923 4531 0.106268 TCTTGCCCTGCAGTGGAAAA 60.106 50.000 21.37 14.16 40.61 2.29
2924 4532 0.971386 CTTGCCCTGCAGTGGAAAAT 59.029 50.000 21.37 0.00 40.61 1.82
2926 4534 0.178967 TGCCCTGCAGTGGAAAATGA 60.179 50.000 21.37 0.00 33.32 2.57
2927 4535 0.529378 GCCCTGCAGTGGAAAATGAG 59.471 55.000 21.37 0.00 0.00 2.90
2931 4539 3.152341 CCTGCAGTGGAAAATGAGAACT 58.848 45.455 13.81 0.00 0.00 3.01
2932 4540 4.326826 CCTGCAGTGGAAAATGAGAACTA 58.673 43.478 13.81 0.00 0.00 2.24
2933 4541 4.946157 CCTGCAGTGGAAAATGAGAACTAT 59.054 41.667 13.81 0.00 0.00 2.12
2934 4542 6.115446 CCTGCAGTGGAAAATGAGAACTATA 58.885 40.000 13.81 0.00 0.00 1.31
2937 4545 6.595326 TGCAGTGGAAAATGAGAACTATACAG 59.405 38.462 0.00 0.00 0.00 2.74
2938 4546 6.457528 GCAGTGGAAAATGAGAACTATACAGC 60.458 42.308 0.00 0.00 0.00 4.40
2939 4547 6.820656 CAGTGGAAAATGAGAACTATACAGCT 59.179 38.462 0.00 0.00 0.00 4.24
2940 4548 7.335422 CAGTGGAAAATGAGAACTATACAGCTT 59.665 37.037 0.00 0.00 0.00 3.74
2941 4549 7.885399 AGTGGAAAATGAGAACTATACAGCTTT 59.115 33.333 0.00 0.00 0.00 3.51
2943 4551 8.514594 TGGAAAATGAGAACTATACAGCTTTTG 58.485 33.333 0.00 0.00 0.00 2.44
2981 5280 7.938490 TGTGGCATTGTCAATATGATGTACTAT 59.062 33.333 0.00 0.00 0.00 2.12
2982 5281 8.786898 GTGGCATTGTCAATATGATGTACTATT 58.213 33.333 0.00 0.00 0.00 1.73
3083 5417 2.672961 TCAGTTATCTGCGGAACCTG 57.327 50.000 0.00 6.23 41.10 4.00
3106 5444 4.579869 ACAACACTGTATTGGAGGCTTAG 58.420 43.478 3.63 0.00 32.54 2.18
3107 5445 3.914426 ACACTGTATTGGAGGCTTAGG 57.086 47.619 0.00 0.00 0.00 2.69
3108 5446 3.182152 ACACTGTATTGGAGGCTTAGGT 58.818 45.455 0.00 0.00 0.00 3.08
3116 5454 4.316025 TTGGAGGCTTAGGTTTAGCAAT 57.684 40.909 0.00 0.00 40.42 3.56
3117 5455 3.886123 TGGAGGCTTAGGTTTAGCAATC 58.114 45.455 0.00 0.00 40.42 2.67
3118 5456 3.265737 TGGAGGCTTAGGTTTAGCAATCA 59.734 43.478 0.00 0.00 40.42 2.57
3120 5458 4.276926 GGAGGCTTAGGTTTAGCAATCATG 59.723 45.833 0.00 0.00 40.42 3.07
3121 5459 5.116084 AGGCTTAGGTTTAGCAATCATGA 57.884 39.130 0.00 0.00 40.42 3.07
3123 5461 6.841601 AGGCTTAGGTTTAGCAATCATGATA 58.158 36.000 9.04 0.00 40.42 2.15
3125 5463 7.946776 AGGCTTAGGTTTAGCAATCATGATAAT 59.053 33.333 9.04 0.56 37.28 1.28
3126 5464 8.239998 GGCTTAGGTTTAGCAATCATGATAATC 58.760 37.037 9.04 0.00 37.28 1.75
3131 5469 9.499479 AGGTTTAGCAATCATGATAATCTGTAG 57.501 33.333 9.04 0.00 37.28 2.74
3132 5470 9.277783 GGTTTAGCAATCATGATAATCTGTAGT 57.722 33.333 9.04 0.00 37.28 2.73
3181 5519 4.185467 ACAACTCTGTAGCTCACATGAG 57.815 45.455 0.00 4.43 38.46 2.90
3184 5522 5.243954 ACAACTCTGTAGCTCACATGAGTAA 59.756 40.000 10.50 0.00 41.11 2.24
3186 5524 4.400884 ACTCTGTAGCTCACATGAGTAAGG 59.599 45.833 10.50 0.00 43.85 2.69
3211 5549 7.010339 ACCTAGGATTCCTATTAACATCTGC 57.990 40.000 17.98 0.00 35.36 4.26
3217 5579 8.055181 AGGATTCCTATTAACATCTGCAAAGAA 58.945 33.333 2.49 0.00 28.47 2.52
3240 5602 6.497785 AGAAAGTGCAGAAGATTTCAGATG 57.502 37.500 0.00 0.00 34.77 2.90
3350 6125 5.596361 ACATAATCCACTTGTCCACACAAAA 59.404 36.000 0.00 0.00 42.13 2.44
3358 6133 4.750098 ACTTGTCCACACAAAATAGAGTCG 59.250 41.667 0.00 0.00 42.13 4.18
3359 6134 4.594123 TGTCCACACAAAATAGAGTCGA 57.406 40.909 0.00 0.00 0.00 4.20
3360 6135 4.556233 TGTCCACACAAAATAGAGTCGAG 58.444 43.478 0.00 0.00 0.00 4.04
3361 6136 4.038763 TGTCCACACAAAATAGAGTCGAGT 59.961 41.667 0.00 0.00 0.00 4.18
3363 6138 4.523173 TCCACACAAAATAGAGTCGAGTCT 59.477 41.667 25.31 25.31 0.00 3.24
3364 6139 4.623167 CCACACAAAATAGAGTCGAGTCTG 59.377 45.833 29.10 16.89 0.00 3.51
3365 6140 4.090642 CACACAAAATAGAGTCGAGTCTGC 59.909 45.833 29.10 1.03 0.00 4.26
3366 6141 4.237724 CACAAAATAGAGTCGAGTCTGCA 58.762 43.478 29.10 13.49 0.00 4.41
3367 6142 4.325741 CACAAAATAGAGTCGAGTCTGCAG 59.674 45.833 29.10 7.63 0.00 4.41
3369 6144 5.183331 ACAAAATAGAGTCGAGTCTGCAGTA 59.817 40.000 29.10 12.06 0.00 2.74
3370 6145 5.493133 AAATAGAGTCGAGTCTGCAGTAG 57.507 43.478 29.10 3.98 0.00 2.57
3371 6146 2.483014 AGAGTCGAGTCTGCAGTAGT 57.517 50.000 21.89 3.34 0.00 2.73
3373 6148 3.527533 AGAGTCGAGTCTGCAGTAGTAG 58.472 50.000 21.89 4.42 0.00 2.57
3374 6149 2.011222 AGTCGAGTCTGCAGTAGTAGC 58.989 52.381 14.67 1.96 0.00 3.58
3375 6150 1.007580 TCGAGTCTGCAGTAGTAGCG 58.992 55.000 14.67 10.18 33.85 4.26
3378 6153 2.286872 GAGTCTGCAGTAGTAGCGGTA 58.713 52.381 14.67 0.00 39.38 4.02
3379 6154 2.015587 AGTCTGCAGTAGTAGCGGTAC 58.984 52.381 16.85 16.85 39.38 3.34
3380 6155 1.741706 GTCTGCAGTAGTAGCGGTACA 59.258 52.381 25.28 9.76 39.38 2.90
3381 6156 2.163010 GTCTGCAGTAGTAGCGGTACAA 59.837 50.000 25.28 4.28 39.38 2.41
3382 6157 2.821378 TCTGCAGTAGTAGCGGTACAAA 59.179 45.455 25.28 11.18 39.38 2.83
3383 6158 2.921754 CTGCAGTAGTAGCGGTACAAAC 59.078 50.000 25.28 20.96 33.72 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 11 2.356313 CTGCTGAGAACACCGCGT 60.356 61.111 4.92 0.00 0.00 6.01
13 15 2.331132 GGCTGCTGCTGAGAACACC 61.331 63.158 15.64 0.00 39.59 4.16
15 17 0.887836 CAAGGCTGCTGCTGAGAACA 60.888 55.000 15.64 0.00 39.59 3.18
94 97 4.505217 GCCGCGCAAGACATGTCG 62.505 66.667 19.85 10.12 43.02 4.35
96 99 3.425713 CAGCCGCGCAAGACATGT 61.426 61.111 8.75 0.00 43.02 3.21
100 103 2.690778 AATTCCAGCCGCGCAAGAC 61.691 57.895 8.75 0.00 43.02 3.01
102 105 2.202518 CAATTCCAGCCGCGCAAG 60.203 61.111 8.75 0.00 43.44 4.01
108 111 3.864686 CGGTCGCAATTCCAGCCG 61.865 66.667 0.00 0.00 0.00 5.52
187 190 6.346912 TGACAGCATCAGACTGACAGACAG 62.347 50.000 10.08 0.00 41.39 3.51
188 191 1.966354 ACAGCATCAGACTGACAGACA 59.034 47.619 10.08 0.00 38.55 3.41
189 192 2.029560 TGACAGCATCAGACTGACAGAC 60.030 50.000 10.08 2.59 35.44 3.51
230 235 4.412207 CATCACACATCAAGTCATGCAAG 58.588 43.478 0.00 0.00 0.00 4.01
239 244 3.014623 ACAGCATCCATCACACATCAAG 58.985 45.455 0.00 0.00 0.00 3.02
246 251 4.233632 TGGAATTACAGCATCCATCACA 57.766 40.909 0.00 0.00 38.30 3.58
247 252 5.126061 ACTTTGGAATTACAGCATCCATCAC 59.874 40.000 0.00 0.00 42.53 3.06
265 276 2.094286 TGTGACAAACCTTGCACTTTGG 60.094 45.455 12.85 4.68 38.02 3.28
361 375 6.238211 CGGTAAATTACTGGAGCTTTGATGAG 60.238 42.308 4.10 0.00 0.00 2.90
362 376 5.584649 CGGTAAATTACTGGAGCTTTGATGA 59.415 40.000 4.10 0.00 0.00 2.92
363 377 5.730568 GCGGTAAATTACTGGAGCTTTGATG 60.731 44.000 13.26 0.00 35.58 3.07
364 378 4.335594 GCGGTAAATTACTGGAGCTTTGAT 59.664 41.667 13.26 0.00 35.58 2.57
365 379 3.687698 GCGGTAAATTACTGGAGCTTTGA 59.312 43.478 13.26 0.00 35.58 2.69
366 380 3.181500 GGCGGTAAATTACTGGAGCTTTG 60.181 47.826 13.26 0.00 35.58 2.77
368 382 2.238898 AGGCGGTAAATTACTGGAGCTT 59.761 45.455 13.26 3.88 35.58 3.74
369 383 1.838077 AGGCGGTAAATTACTGGAGCT 59.162 47.619 13.26 0.00 35.58 4.09
370 384 2.327200 AGGCGGTAAATTACTGGAGC 57.673 50.000 13.26 8.83 35.58 4.70
371 385 3.606687 ACAAGGCGGTAAATTACTGGAG 58.393 45.455 13.26 0.40 35.58 3.86
372 386 3.706600 ACAAGGCGGTAAATTACTGGA 57.293 42.857 13.26 0.00 35.58 3.86
373 387 3.754323 TGAACAAGGCGGTAAATTACTGG 59.246 43.478 13.26 2.86 35.58 4.00
386 400 4.385358 TTTCTTTTGAGGTGAACAAGGC 57.615 40.909 0.00 0.00 0.00 4.35
409 423 5.186021 TGACAACATACAAGGTGGTGTTTTT 59.814 36.000 0.00 0.00 46.79 1.94
411 425 4.274147 TGACAACATACAAGGTGGTGTTT 58.726 39.130 0.00 0.00 46.79 2.83
412 426 3.892284 TGACAACATACAAGGTGGTGTT 58.108 40.909 0.00 0.00 46.79 3.32
481 543 9.706691 TGTCAGGAAGTAACTATTTACAAGAAG 57.293 33.333 5.85 0.00 40.25 2.85
484 546 9.436957 ACATGTCAGGAAGTAACTATTTACAAG 57.563 33.333 5.85 0.00 40.25 3.16
487 549 8.997621 TCACATGTCAGGAAGTAACTATTTAC 57.002 34.615 0.00 0.00 38.34 2.01
493 555 6.605471 TGTATCACATGTCAGGAAGTAACT 57.395 37.500 0.00 0.00 0.00 2.24
494 556 7.097192 TCTTGTATCACATGTCAGGAAGTAAC 58.903 38.462 0.00 0.00 0.00 2.50
496 558 6.850752 TCTTGTATCACATGTCAGGAAGTA 57.149 37.500 0.00 0.00 0.00 2.24
512 574 7.280205 CGGGTACAGAATTTAGCTTTCTTGTAT 59.720 37.037 0.00 0.00 31.11 2.29
547 615 8.914011 ACCTTTTTCTGTGTAGAATTTAGCTTT 58.086 29.630 0.00 0.00 42.25 3.51
548 616 8.465273 ACCTTTTTCTGTGTAGAATTTAGCTT 57.535 30.769 0.00 0.00 42.25 3.74
549 617 8.465273 AACCTTTTTCTGTGTAGAATTTAGCT 57.535 30.769 0.00 0.00 42.25 3.32
558 626 9.406828 GCCTAAAATAAACCTTTTTCTGTGTAG 57.593 33.333 0.00 0.00 31.15 2.74
588 656 6.213802 TCCCTCAAACTTGTTTTACCCTTTTT 59.786 34.615 0.00 0.00 0.00 1.94
593 661 5.601583 TTTCCCTCAAACTTGTTTTACCC 57.398 39.130 0.00 0.00 0.00 3.69
653 753 1.297598 CGGGAATTGCATCGCGTTC 60.298 57.895 16.14 0.45 46.75 3.95
676 776 0.239613 TGTGTGTGTGTGTGTGTTGC 59.760 50.000 0.00 0.00 0.00 4.17
918 1033 1.774300 GTGGGTGTTTGGGGGAGAT 59.226 57.895 0.00 0.00 0.00 2.75
928 1043 1.705997 AAGAGAAGCGGGTGGGTGTT 61.706 55.000 0.00 0.00 0.00 3.32
929 1044 2.113243 GAAGAGAAGCGGGTGGGTGT 62.113 60.000 0.00 0.00 0.00 4.16
931 1046 1.536662 AGAAGAGAAGCGGGTGGGT 60.537 57.895 0.00 0.00 0.00 4.51
932 1047 1.219393 GAGAAGAGAAGCGGGTGGG 59.781 63.158 0.00 0.00 0.00 4.61
933 1048 1.153745 CGAGAAGAGAAGCGGGTGG 60.154 63.158 0.00 0.00 0.00 4.61
934 1049 1.807573 GCGAGAAGAGAAGCGGGTG 60.808 63.158 0.00 0.00 0.00 4.61
935 1050 2.574399 GCGAGAAGAGAAGCGGGT 59.426 61.111 0.00 0.00 0.00 5.28
936 1051 2.202810 GGCGAGAAGAGAAGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
937 1052 2.580867 CGGCGAGAAGAGAAGCGG 60.581 66.667 0.00 0.00 0.00 5.52
939 1054 2.888051 GGCGGCGAGAAGAGAAGC 60.888 66.667 12.98 0.00 0.00 3.86
940 1055 2.580867 CGGCGGCGAGAAGAGAAG 60.581 66.667 29.19 0.00 0.00 2.85
941 1056 3.060000 TCGGCGGCGAGAAGAGAA 61.060 61.111 31.46 5.34 0.00 2.87
942 1057 3.812019 GTCGGCGGCGAGAAGAGA 61.812 66.667 35.53 8.71 0.00 3.10
1187 1595 4.207165 GAGAGAGAGAGACTGGCAGTAAT 58.793 47.826 22.11 12.61 0.00 1.89
1202 1610 1.387539 CAGCCGATCAGTGAGAGAGA 58.612 55.000 0.00 0.00 0.00 3.10
1206 1614 1.253593 ACAGCAGCCGATCAGTGAGA 61.254 55.000 0.00 0.00 0.00 3.27
1209 1617 0.671472 TCAACAGCAGCCGATCAGTG 60.671 55.000 0.00 0.00 0.00 3.66
1231 1639 1.226974 ATCGGTCAATCACGAGGCG 60.227 57.895 0.00 0.00 42.89 5.52
1234 1642 2.515926 ATCCATCGGTCAATCACGAG 57.484 50.000 0.00 0.00 42.89 4.18
1250 1658 3.193479 AGACAAAAATCAAGCCGGAATCC 59.807 43.478 5.05 0.00 0.00 3.01
1255 1663 1.613437 ACCAGACAAAAATCAAGCCGG 59.387 47.619 0.00 0.00 0.00 6.13
1259 1667 8.034804 CCCCTAATTAACCAGACAAAAATCAAG 58.965 37.037 0.00 0.00 0.00 3.02
1262 1670 7.476540 ACCCCTAATTAACCAGACAAAAATC 57.523 36.000 0.00 0.00 0.00 2.17
1269 1677 4.476628 TCGAACCCCTAATTAACCAGAC 57.523 45.455 0.00 0.00 0.00 3.51
1271 1679 5.291905 AGATCGAACCCCTAATTAACCAG 57.708 43.478 0.00 0.00 0.00 4.00
1272 1680 4.102054 GGAGATCGAACCCCTAATTAACCA 59.898 45.833 0.00 0.00 0.00 3.67
1273 1681 4.639334 GGAGATCGAACCCCTAATTAACC 58.361 47.826 0.00 0.00 0.00 2.85
1274 1682 4.202192 ACGGAGATCGAACCCCTAATTAAC 60.202 45.833 0.00 0.00 42.43 2.01
1276 1685 3.569491 ACGGAGATCGAACCCCTAATTA 58.431 45.455 0.00 0.00 42.43 1.40
1593 2010 0.647104 CGTACTCATCGTCGTCGTCG 60.647 60.000 5.50 5.50 38.33 5.12
1594 2011 0.642291 TCGTACTCATCGTCGTCGTC 59.358 55.000 1.33 0.00 38.33 4.20
1595 2012 1.005242 CATCGTACTCATCGTCGTCGT 60.005 52.381 1.33 0.00 38.33 4.34
1620 2037 0.677098 CCTCCTCTTCGTCGTCCTCA 60.677 60.000 0.00 0.00 0.00 3.86
1632 2049 1.306568 GTCCAAGCCCTCCTCCTCT 60.307 63.158 0.00 0.00 0.00 3.69
1760 2183 2.358737 CGCTGTCCTTGGTGGTCC 60.359 66.667 0.00 0.00 37.07 4.46
1787 2225 2.183811 CTGCTGCTCCGGTCTGAG 59.816 66.667 0.00 0.00 35.40 3.35
1788 2226 4.074526 GCTGCTGCTCCGGTCTGA 62.075 66.667 8.53 0.00 36.03 3.27
1820 2273 2.994671 TTCTCCACCGAGCTGAGCG 61.995 63.158 0.00 0.00 35.94 5.03
1826 2279 1.016653 GCTGAAGTTCTCCACCGAGC 61.017 60.000 4.17 0.00 35.94 5.03
1903 2359 1.077357 AGTCGGAGAGCCTGACGAT 60.077 57.895 0.00 0.00 40.36 3.73
1905 2361 2.795297 GAGTCGGAGAGCCTGACG 59.205 66.667 0.00 0.00 40.36 4.35
1944 2403 1.966451 CACCGCCGGCTTCTCTTTT 60.966 57.895 26.68 0.00 0.00 2.27
1945 2404 2.358737 CACCGCCGGCTTCTCTTT 60.359 61.111 26.68 0.00 0.00 2.52
2226 2685 1.725641 CATCGCTGCAGTTCCAGTAA 58.274 50.000 16.64 0.00 35.28 2.24
2325 2784 1.599542 GCTCAAATCGCCGAAGCTAAT 59.400 47.619 1.44 0.00 36.60 1.73
2326 2785 1.006832 GCTCAAATCGCCGAAGCTAA 58.993 50.000 1.44 0.00 36.60 3.09
2327 2786 0.175760 AGCTCAAATCGCCGAAGCTA 59.824 50.000 9.14 0.00 36.60 3.32
2328 2787 0.674895 AAGCTCAAATCGCCGAAGCT 60.675 50.000 5.25 5.25 36.60 3.74
2329 2788 0.169009 AAAGCTCAAATCGCCGAAGC 59.831 50.000 0.35 0.35 0.00 3.86
2330 2789 1.466360 CCAAAGCTCAAATCGCCGAAG 60.466 52.381 0.00 0.00 0.00 3.79
2331 2790 0.521291 CCAAAGCTCAAATCGCCGAA 59.479 50.000 0.00 0.00 0.00 4.30
2332 2791 0.605319 ACCAAAGCTCAAATCGCCGA 60.605 50.000 0.00 0.00 0.00 5.54
2333 2792 0.240945 AACCAAAGCTCAAATCGCCG 59.759 50.000 0.00 0.00 0.00 6.46
2334 2793 1.269448 TCAACCAAAGCTCAAATCGCC 59.731 47.619 0.00 0.00 0.00 5.54
2357 2816 1.941377 TTGGAGCCTGGAAAATGCAT 58.059 45.000 0.00 0.00 0.00 3.96
2358 2817 1.714541 TTTGGAGCCTGGAAAATGCA 58.285 45.000 0.00 0.00 0.00 3.96
2359 2818 2.027837 ACATTTGGAGCCTGGAAAATGC 60.028 45.455 17.25 0.81 41.54 3.56
2360 2819 3.007182 ACACATTTGGAGCCTGGAAAATG 59.993 43.478 16.38 16.38 42.82 2.32
2361 2820 3.007182 CACACATTTGGAGCCTGGAAAAT 59.993 43.478 0.00 0.00 0.00 1.82
2362 2821 2.364970 CACACATTTGGAGCCTGGAAAA 59.635 45.455 0.00 0.00 0.00 2.29
2366 2825 0.540365 ACCACACATTTGGAGCCTGG 60.540 55.000 0.00 0.00 39.24 4.45
2368 2827 1.181098 GCACCACACATTTGGAGCCT 61.181 55.000 0.53 0.00 44.87 4.58
2398 2861 3.244044 GCCAAGTTCTGCAATGGGTAAAA 60.244 43.478 0.00 0.00 33.45 1.52
2439 2902 3.407424 TCATCATAATTCTGGAGGGCG 57.593 47.619 0.00 0.00 0.00 6.13
2494 2957 6.004574 ACTCACTCACTCACACTGTATCTTA 58.995 40.000 0.00 0.00 0.00 2.10
2506 2969 2.620585 CACTCACTCACTCACTCACTCA 59.379 50.000 0.00 0.00 0.00 3.41
2507 2970 2.881513 TCACTCACTCACTCACTCACTC 59.118 50.000 0.00 0.00 0.00 3.51
2508 2971 2.884012 CTCACTCACTCACTCACTCACT 59.116 50.000 0.00 0.00 0.00 3.41
2509 2972 2.881513 TCTCACTCACTCACTCACTCAC 59.118 50.000 0.00 0.00 0.00 3.51
2510 2973 3.145286 CTCTCACTCACTCACTCACTCA 58.855 50.000 0.00 0.00 0.00 3.41
2511 2974 3.407698 TCTCTCACTCACTCACTCACTC 58.592 50.000 0.00 0.00 0.00 3.51
2632 3407 8.158132 TGACAAAGGGTGAAATAATAGTACACA 58.842 33.333 0.00 0.00 33.82 3.72
2633 3408 8.556213 TGACAAAGGGTGAAATAATAGTACAC 57.444 34.615 0.00 0.00 0.00 2.90
2670 3446 6.765989 ACTGAACTCAAATGCAGTAGTACAAA 59.234 34.615 2.52 0.00 39.61 2.83
2679 3455 4.037208 AGGTGAAACTGAACTCAAATGCAG 59.963 41.667 0.00 0.00 36.74 4.41
2680 3456 3.953612 AGGTGAAACTGAACTCAAATGCA 59.046 39.130 0.00 0.00 36.74 3.96
2693 3511 4.636206 GTCACAGTTCAGAAAGGTGAAACT 59.364 41.667 16.03 0.00 39.87 2.66
2694 3512 4.636206 AGTCACAGTTCAGAAAGGTGAAAC 59.364 41.667 16.03 8.56 39.87 2.78
2714 3532 0.892814 AGAAAAGCAGGCAGGCAGTC 60.893 55.000 0.00 0.00 35.83 3.51
2715 3533 0.468771 AAGAAAAGCAGGCAGGCAGT 60.469 50.000 0.00 0.00 35.83 4.40
2724 3542 7.031975 ACAAAAGTTCAGAAGAAGAAAAGCAG 58.968 34.615 0.00 0.00 33.63 4.24
2726 3544 7.818493 AACAAAAGTTCAGAAGAAGAAAAGC 57.182 32.000 0.00 0.00 33.63 3.51
2734 3552 6.293626 GCTGCAGATAACAAAAGTTCAGAAGA 60.294 38.462 20.43 0.00 0.00 2.87
2735 3553 5.855395 GCTGCAGATAACAAAAGTTCAGAAG 59.145 40.000 20.43 0.00 0.00 2.85
2737 3555 4.821260 TGCTGCAGATAACAAAAGTTCAGA 59.179 37.500 20.43 0.00 0.00 3.27
2738 3556 4.913924 GTGCTGCAGATAACAAAAGTTCAG 59.086 41.667 20.43 0.00 0.00 3.02
2739 3557 4.261572 GGTGCTGCAGATAACAAAAGTTCA 60.262 41.667 20.43 0.00 0.00 3.18
2740 3558 4.022849 AGGTGCTGCAGATAACAAAAGTTC 60.023 41.667 20.43 0.00 0.00 3.01
2743 4350 3.503363 TGAGGTGCTGCAGATAACAAAAG 59.497 43.478 20.43 0.00 0.00 2.27
2744 4351 3.253188 GTGAGGTGCTGCAGATAACAAAA 59.747 43.478 20.43 0.00 0.00 2.44
2751 4358 0.109153 TGTTGTGAGGTGCTGCAGAT 59.891 50.000 20.43 0.00 0.00 2.90
2753 4360 0.816825 AGTGTTGTGAGGTGCTGCAG 60.817 55.000 10.11 10.11 0.00 4.41
2755 4363 1.734465 GATAGTGTTGTGAGGTGCTGC 59.266 52.381 0.00 0.00 0.00 5.25
2756 4364 3.325293 AGATAGTGTTGTGAGGTGCTG 57.675 47.619 0.00 0.00 0.00 4.41
2760 4368 3.261897 CCTCCAAGATAGTGTTGTGAGGT 59.738 47.826 12.21 0.00 37.47 3.85
2766 4374 5.734720 TCTTAAGCCTCCAAGATAGTGTTG 58.265 41.667 0.00 0.00 0.00 3.33
2768 4376 6.567602 AATCTTAAGCCTCCAAGATAGTGT 57.432 37.500 0.00 0.00 39.91 3.55
2769 4377 7.987458 TGTTAATCTTAAGCCTCCAAGATAGTG 59.013 37.037 0.00 0.00 39.91 2.74
2770 4378 8.090788 TGTTAATCTTAAGCCTCCAAGATAGT 57.909 34.615 0.00 0.00 39.91 2.12
2771 4379 9.213799 GATGTTAATCTTAAGCCTCCAAGATAG 57.786 37.037 0.00 0.00 39.91 2.08
2772 4380 8.713971 TGATGTTAATCTTAAGCCTCCAAGATA 58.286 33.333 0.00 0.00 39.91 1.98
2773 4381 7.577303 TGATGTTAATCTTAAGCCTCCAAGAT 58.423 34.615 0.00 0.00 42.03 2.40
2775 4383 7.500227 TCATGATGTTAATCTTAAGCCTCCAAG 59.500 37.037 0.00 0.00 33.61 3.61
2776 4384 7.345691 TCATGATGTTAATCTTAAGCCTCCAA 58.654 34.615 0.00 0.00 33.61 3.53
2777 4385 6.899089 TCATGATGTTAATCTTAAGCCTCCA 58.101 36.000 0.00 0.00 33.61 3.86
2778 4386 7.992754 ATCATGATGTTAATCTTAAGCCTCC 57.007 36.000 7.59 0.00 33.61 4.30
2793 4401 9.159364 GCATGTATGTACAGATTATCATGATGT 57.841 33.333 18.72 11.03 39.92 3.06
2794 4402 9.158233 TGCATGTATGTACAGATTATCATGATG 57.842 33.333 18.72 5.05 39.92 3.07
2795 4403 9.729281 TTGCATGTATGTACAGATTATCATGAT 57.271 29.630 17.96 13.81 39.92 2.45
2796 4404 9.211485 CTTGCATGTATGTACAGATTATCATGA 57.789 33.333 17.96 0.00 39.92 3.07
2798 4406 7.881751 AGCTTGCATGTATGTACAGATTATCAT 59.118 33.333 0.33 0.00 39.92 2.45
2799 4407 7.219322 AGCTTGCATGTATGTACAGATTATCA 58.781 34.615 0.33 0.00 39.92 2.15
2800 4408 7.601886 AGAGCTTGCATGTATGTACAGATTATC 59.398 37.037 0.33 0.00 39.92 1.75
2801 4409 7.387122 CAGAGCTTGCATGTATGTACAGATTAT 59.613 37.037 0.33 0.00 39.92 1.28
2802 4410 6.703165 CAGAGCTTGCATGTATGTACAGATTA 59.297 38.462 0.33 0.00 39.92 1.75
2803 4411 5.526479 CAGAGCTTGCATGTATGTACAGATT 59.474 40.000 0.33 0.00 39.92 2.40
2804 4412 5.055144 CAGAGCTTGCATGTATGTACAGAT 58.945 41.667 0.33 0.00 39.92 2.90
2805 4413 4.081476 ACAGAGCTTGCATGTATGTACAGA 60.081 41.667 0.33 0.00 39.92 3.41
2807 4415 4.206477 ACAGAGCTTGCATGTATGTACA 57.794 40.909 0.00 0.00 40.98 2.90
2808 4416 4.210120 GCTACAGAGCTTGCATGTATGTAC 59.790 45.833 9.85 0.00 45.98 2.90
2809 4417 4.371786 GCTACAGAGCTTGCATGTATGTA 58.628 43.478 9.85 7.28 45.98 2.29
2811 4419 3.874400 GCTACAGAGCTTGCATGTATG 57.126 47.619 9.85 0.00 45.98 2.39
2823 4431 3.869832 CCATGTTCATGTGAGCTACAGAG 59.130 47.826 11.13 0.00 43.80 3.35
2824 4432 3.515104 TCCATGTTCATGTGAGCTACAGA 59.485 43.478 11.13 0.00 43.80 3.41
2825 4433 3.620374 GTCCATGTTCATGTGAGCTACAG 59.380 47.826 11.13 0.00 43.80 2.74
2826 4434 3.599343 GTCCATGTTCATGTGAGCTACA 58.401 45.455 11.13 0.00 44.87 2.74
2827 4435 2.939103 GGTCCATGTTCATGTGAGCTAC 59.061 50.000 17.46 0.00 0.00 3.58
2828 4436 2.840038 AGGTCCATGTTCATGTGAGCTA 59.160 45.455 21.83 0.69 32.18 3.32
2830 4438 2.119801 AGGTCCATGTTCATGTGAGC 57.880 50.000 17.23 17.23 0.00 4.26
2831 4439 3.198635 ACCTAGGTCCATGTTCATGTGAG 59.801 47.826 9.21 0.00 0.00 3.51
2833 4441 3.634397 ACCTAGGTCCATGTTCATGTG 57.366 47.619 9.21 4.17 0.00 3.21
2834 4442 4.657814 AAACCTAGGTCCATGTTCATGT 57.342 40.909 16.64 0.00 0.00 3.21
2835 4443 6.356556 TGATAAACCTAGGTCCATGTTCATG 58.643 40.000 16.64 5.88 0.00 3.07
2836 4444 6.575244 TGATAAACCTAGGTCCATGTTCAT 57.425 37.500 16.64 0.00 0.00 2.57
2837 4445 6.575244 ATGATAAACCTAGGTCCATGTTCA 57.425 37.500 16.64 12.66 0.00 3.18
2838 4446 8.837389 GTTAATGATAAACCTAGGTCCATGTTC 58.163 37.037 16.64 7.48 0.00 3.18
2839 4447 8.333235 TGTTAATGATAAACCTAGGTCCATGTT 58.667 33.333 16.64 8.00 0.00 2.71
2840 4448 7.867921 TGTTAATGATAAACCTAGGTCCATGT 58.132 34.615 16.64 2.97 0.00 3.21
2841 4449 8.924511 ATGTTAATGATAAACCTAGGTCCATG 57.075 34.615 16.64 0.00 0.00 3.66
2846 4454 9.726438 GCTCATATGTTAATGATAAACCTAGGT 57.274 33.333 9.21 9.21 35.40 3.08
2847 4455 9.725019 TGCTCATATGTTAATGATAAACCTAGG 57.275 33.333 7.41 7.41 35.40 3.02
2850 4458 9.851686 TTCTGCTCATATGTTAATGATAAACCT 57.148 29.630 1.90 0.00 35.40 3.50
2857 4465 9.617523 TGAAATCTTCTGCTCATATGTTAATGA 57.382 29.630 1.90 0.00 34.72 2.57
2858 4466 9.880064 CTGAAATCTTCTGCTCATATGTTAATG 57.120 33.333 1.90 0.00 0.00 1.90
2862 4470 9.842775 TTATCTGAAATCTTCTGCTCATATGTT 57.157 29.630 1.90 0.00 0.00 2.71
2871 4479 8.727910 TGCATGATATTATCTGAAATCTTCTGC 58.272 33.333 0.00 0.00 0.00 4.26
2880 4488 9.399797 AGACAAGTTTGCATGATATTATCTGAA 57.600 29.630 0.00 0.00 0.00 3.02
2881 4489 8.969260 AGACAAGTTTGCATGATATTATCTGA 57.031 30.769 0.00 0.00 0.00 3.27
2882 4490 9.447040 CAAGACAAGTTTGCATGATATTATCTG 57.553 33.333 0.00 2.94 0.00 2.90
2897 4505 1.035139 CTGCAGGGCAAGACAAGTTT 58.965 50.000 5.57 0.00 38.41 2.66
2904 4512 0.106268 TTTTCCACTGCAGGGCAAGA 60.106 50.000 19.93 3.69 38.41 3.02
2905 4513 0.971386 ATTTTCCACTGCAGGGCAAG 59.029 50.000 19.93 0.79 38.41 4.01
2906 4514 0.680618 CATTTTCCACTGCAGGGCAA 59.319 50.000 19.93 2.38 38.41 4.52
2907 4515 0.178967 TCATTTTCCACTGCAGGGCA 60.179 50.000 19.93 0.00 36.92 5.36
2908 4516 0.529378 CTCATTTTCCACTGCAGGGC 59.471 55.000 19.93 0.00 0.00 5.19
2909 4517 2.205022 TCTCATTTTCCACTGCAGGG 57.795 50.000 19.93 15.23 0.00 4.45
2914 4522 6.820656 AGCTGTATAGTTCTCATTTTCCACTG 59.179 38.462 0.00 0.00 0.00 3.66
2915 4523 6.951971 AGCTGTATAGTTCTCATTTTCCACT 58.048 36.000 0.00 0.00 0.00 4.00
2916 4524 7.617041 AAGCTGTATAGTTCTCATTTTCCAC 57.383 36.000 0.00 0.00 0.00 4.02
2917 4525 8.514594 CAAAAGCTGTATAGTTCTCATTTTCCA 58.485 33.333 0.00 0.00 0.00 3.53
2918 4526 7.486232 GCAAAAGCTGTATAGTTCTCATTTTCC 59.514 37.037 0.00 0.00 0.00 3.13
2919 4527 8.023128 TGCAAAAGCTGTATAGTTCTCATTTTC 58.977 33.333 0.00 0.00 0.00 2.29
2920 4528 7.885297 TGCAAAAGCTGTATAGTTCTCATTTT 58.115 30.769 0.00 0.00 0.00 1.82
2921 4529 7.452880 TGCAAAAGCTGTATAGTTCTCATTT 57.547 32.000 0.00 0.00 0.00 2.32
2922 4530 7.636150 ATGCAAAAGCTGTATAGTTCTCATT 57.364 32.000 0.00 0.00 0.00 2.57
2923 4531 7.636150 AATGCAAAAGCTGTATAGTTCTCAT 57.364 32.000 0.00 0.00 29.02 2.90
2924 4532 7.174772 TGAAATGCAAAAGCTGTATAGTTCTCA 59.825 33.333 0.00 0.00 29.02 3.27
2926 4534 7.391554 TCTGAAATGCAAAAGCTGTATAGTTCT 59.608 33.333 0.00 0.00 29.02 3.01
2927 4535 7.530010 TCTGAAATGCAAAAGCTGTATAGTTC 58.470 34.615 0.00 0.00 29.02 3.01
2931 4539 5.945784 ACCTCTGAAATGCAAAAGCTGTATA 59.054 36.000 0.00 0.00 29.02 1.47
2932 4540 4.768968 ACCTCTGAAATGCAAAAGCTGTAT 59.231 37.500 0.00 0.00 30.59 2.29
2933 4541 4.022935 CACCTCTGAAATGCAAAAGCTGTA 60.023 41.667 0.00 0.00 0.00 2.74
2934 4542 2.961062 ACCTCTGAAATGCAAAAGCTGT 59.039 40.909 0.00 0.00 0.00 4.40
2937 4545 3.054878 CACACCTCTGAAATGCAAAAGC 58.945 45.455 0.00 0.00 0.00 3.51
2938 4546 3.645884 CCACACCTCTGAAATGCAAAAG 58.354 45.455 0.00 0.00 0.00 2.27
2939 4547 2.224018 GCCACACCTCTGAAATGCAAAA 60.224 45.455 0.00 0.00 0.00 2.44
2940 4548 1.340889 GCCACACCTCTGAAATGCAAA 59.659 47.619 0.00 0.00 0.00 3.68
2941 4549 0.961019 GCCACACCTCTGAAATGCAA 59.039 50.000 0.00 0.00 0.00 4.08
2943 4551 1.180029 ATGCCACACCTCTGAAATGC 58.820 50.000 0.00 0.00 0.00 3.56
2944 4552 2.559668 ACAATGCCACACCTCTGAAATG 59.440 45.455 0.00 0.00 0.00 2.32
2945 4553 2.821969 GACAATGCCACACCTCTGAAAT 59.178 45.455 0.00 0.00 0.00 2.17
2946 4554 2.229792 GACAATGCCACACCTCTGAAA 58.770 47.619 0.00 0.00 0.00 2.69
2949 4557 1.608055 TTGACAATGCCACACCTCTG 58.392 50.000 0.00 0.00 0.00 3.35
2950 4558 2.592102 ATTGACAATGCCACACCTCT 57.408 45.000 0.00 0.00 0.00 3.69
2952 4560 3.966979 TCATATTGACAATGCCACACCT 58.033 40.909 11.05 0.00 0.00 4.00
2953 4561 4.098349 ACATCATATTGACAATGCCACACC 59.902 41.667 11.05 0.00 0.00 4.16
3009 5339 7.598493 CAGTTCAGAAAGGTGAAAACTGAAAAA 59.402 33.333 0.00 0.00 44.97 1.94
3010 5340 7.090173 CAGTTCAGAAAGGTGAAAACTGAAAA 58.910 34.615 0.00 0.00 44.97 2.29
3011 5341 6.208599 ACAGTTCAGAAAGGTGAAAACTGAAA 59.791 34.615 17.17 0.00 44.97 2.69
3012 5342 5.710099 ACAGTTCAGAAAGGTGAAAACTGAA 59.290 36.000 17.17 0.00 42.59 3.02
3013 5343 5.253330 ACAGTTCAGAAAGGTGAAAACTGA 58.747 37.500 17.17 0.00 37.43 3.41
3014 5344 5.567138 ACAGTTCAGAAAGGTGAAAACTG 57.433 39.130 10.56 10.56 39.60 3.16
3015 5345 5.589050 GGTACAGTTCAGAAAGGTGAAAACT 59.411 40.000 0.00 0.00 38.17 2.66
3083 5417 3.059352 AGCCTCCAATACAGTGTTGTC 57.941 47.619 0.00 0.00 38.76 3.18
3106 5444 9.277783 ACTACAGATTATCATGATTGCTAAACC 57.722 33.333 14.65 0.00 0.00 3.27
3141 5479 8.960591 AGAGTTGTATGCTTACATTTATGCTTT 58.039 29.630 12.73 0.07 38.12 3.51
3143 5481 7.554118 ACAGAGTTGTATGCTTACATTTATGCT 59.446 33.333 12.73 5.58 38.12 3.79
3149 5487 6.644347 AGCTACAGAGTTGTATGCTTACATT 58.356 36.000 12.73 5.37 39.26 2.71
3153 5491 5.185056 TGTGAGCTACAGAGTTGTATGCTTA 59.815 40.000 10.64 6.43 40.79 3.09
3161 5499 4.185467 ACTCATGTGAGCTACAGAGTTG 57.815 45.455 9.84 5.93 45.79 3.16
3181 5519 8.488308 TGTTAATAGGAATCCTAGGTCCTTAC 57.512 38.462 22.59 16.08 41.73 2.34
3184 5522 7.456269 CAGATGTTAATAGGAATCCTAGGTCCT 59.544 40.741 21.46 21.46 46.29 3.85
3186 5524 7.100409 GCAGATGTTAATAGGAATCCTAGGTC 58.900 42.308 14.99 0.00 39.70 3.85
3211 5549 7.198390 TGAAATCTTCTGCACTTTCTTCTTTG 58.802 34.615 0.00 0.00 0.00 2.77
3217 5579 6.002704 ACATCTGAAATCTTCTGCACTTTCT 58.997 36.000 0.00 0.00 0.00 2.52
3240 5602 0.980423 ACTGCAGGGGAAGAGAAGAC 59.020 55.000 19.93 0.00 0.00 3.01
3266 6041 6.573664 TTGCAAAAGCTGTATAGTTCACAT 57.426 33.333 0.00 0.00 0.00 3.21
3267 6042 6.205784 GTTTGCAAAAGCTGTATAGTTCACA 58.794 36.000 14.67 0.00 0.00 3.58
3269 6044 5.448438 CGTTTGCAAAAGCTGTATAGTTCA 58.552 37.500 14.67 0.00 0.00 3.18
3270 6045 4.320953 GCGTTTGCAAAAGCTGTATAGTTC 59.679 41.667 33.54 9.60 39.72 3.01
3272 6047 3.821841 GCGTTTGCAAAAGCTGTATAGT 58.178 40.909 33.54 0.00 39.72 2.12
3350 6125 4.145365 ACTACTGCAGACTCGACTCTAT 57.855 45.455 23.35 0.00 0.00 1.98
3358 6133 1.096416 ACCGCTACTACTGCAGACTC 58.904 55.000 23.35 2.08 0.00 3.36
3359 6134 2.015587 GTACCGCTACTACTGCAGACT 58.984 52.381 23.35 0.27 0.00 3.24
3360 6135 1.741706 TGTACCGCTACTACTGCAGAC 59.258 52.381 23.35 4.18 0.00 3.51
3361 6136 2.118313 TGTACCGCTACTACTGCAGA 57.882 50.000 23.35 2.95 0.00 4.26
3363 6138 2.559668 AGTTTGTACCGCTACTACTGCA 59.440 45.455 0.00 0.00 0.00 4.41
3364 6139 2.921754 CAGTTTGTACCGCTACTACTGC 59.078 50.000 9.32 0.00 33.45 4.40
3365 6140 2.921754 GCAGTTTGTACCGCTACTACTG 59.078 50.000 14.29 14.29 38.24 2.74
3366 6141 2.559668 TGCAGTTTGTACCGCTACTACT 59.440 45.455 0.00 0.00 0.00 2.57
3367 6142 2.950433 TGCAGTTTGTACCGCTACTAC 58.050 47.619 0.00 0.00 0.00 2.73
3369 6144 2.536761 TTGCAGTTTGTACCGCTACT 57.463 45.000 0.00 0.00 0.00 2.57
3370 6145 2.664698 GCTTTGCAGTTTGTACCGCTAC 60.665 50.000 0.00 0.00 0.00 3.58
3371 6146 1.533731 GCTTTGCAGTTTGTACCGCTA 59.466 47.619 0.00 0.00 0.00 4.26
3373 6148 0.663269 GGCTTTGCAGTTTGTACCGC 60.663 55.000 0.00 0.00 0.00 5.68
3374 6149 0.951558 AGGCTTTGCAGTTTGTACCG 59.048 50.000 0.00 0.00 0.00 4.02
3375 6150 2.095212 GCTAGGCTTTGCAGTTTGTACC 60.095 50.000 0.00 0.00 0.00 3.34
3378 6153 0.593128 CGCTAGGCTTTGCAGTTTGT 59.407 50.000 11.63 0.00 0.00 2.83
3379 6154 0.593128 ACGCTAGGCTTTGCAGTTTG 59.407 50.000 11.63 0.00 0.00 2.93
3380 6155 0.875059 GACGCTAGGCTTTGCAGTTT 59.125 50.000 11.63 0.00 0.00 2.66
3381 6156 0.250295 TGACGCTAGGCTTTGCAGTT 60.250 50.000 11.63 0.00 0.00 3.16
3382 6157 0.951040 GTGACGCTAGGCTTTGCAGT 60.951 55.000 11.63 9.88 0.00 4.40
3383 6158 1.639298 GGTGACGCTAGGCTTTGCAG 61.639 60.000 11.63 7.42 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.