>input_sequence_51954
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-ATGGGCTGCTTCCTCGGCT------------------------------------------------------------
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------------------------------------------------------------------GCTTCGGGGGCGCC
AAGTCCAAGAAGGAGCGCCGCCACCGCCGGCGCAAGCAGCGCTCCCCCTCCCACTCCCCCTCCAAGGCCGCCCGCGACGC
CGAGGCCGCCTCCGCCGCCGCCCCGCTCCTCGCCACCCTCCTCGAGCTCAGGTTCGTTCCTTGTCCCATCGAGGATTACT
GCCAGTCTCTCTCTCTCACTGATCGGCTGCTGTTGATCCGCCTCGTGATTGACCGATGGATTCCGGCTTGATTTTTGTCT
GG-TTAATTAGGGGTTCGATCTCCGTTTGATTTTTT--CTGGTTGATTAGGGATTCGGCCGATGACCTGTGCCTGGCCGT
CGTCGCCAAGAAGAAGGTGACGTTCGACCCCAACGTGACCGCCTACGAGGCGCCGCCGATCCCCGAGGGCGAGGAGGCCG
CGACA------GAGGAGGAGGAGGAGGGCCGCGCCGCGGCGGGCGGCGAGGAGGCGTGGACGCTGCTGGGGCCCGAGTGC
GCGAAATCAGAGGCGTTCCCGCTCAACCACAGGTACGGCAACTGCGCCGGCGCCGACGACGACAGCGACTACGAGGACTG
CTACGACGACGACGACGACGATGAGTACGATGACGATGAGGACGACGAAGAGGAGGAGGGC------TTGGACGGGATCG
ACGAGTGCGCGGTGGACGACGACGAGGAGCAAGGCGGGCTTCTGGGCATCGCGCGCGGCGAGGAGGAGGCGTGCGAGTCG
CTCTTCCTGCTCCCGGCGCCCAGGACCACCAAGGACA---------------GCGCCGCTGCCGCTCAGACCGGAGCAGC
AGC---------------TGAGGCAACCGCCGCGCTCAGCTCGGTGGAGAACTTCAGCCAGTGGAAGGACG---CCAAGC
CACACACCGCCGCGCCCAAGGATTCAGAGAAGGAGAACATCGTCAGGCTCTCCGACT---CGGCGACGGCCCCTGATATG
AAAAAAGAGAAGCCGGCGGTGAGCTGGGACTACACCCCCAGGACGCCGAGCAAGCAGGAGGCCTCGGTGGACGCGAGCCT
CTCCACGTGGCTGGGCTCCTCGGGGACGCCGGAGAGCAACTACTCGGTGCGGTCCTACTCGCCGATCAGCCGGGAGGACC
GGCCCATCCTCGGCGCCCTCACCGTGGAGGACATCAAGATCTCCTCGGCCAACTCGTCGCCGAGGCGGTCGCGGTCCCCG
AGCCCGAGCCCCGACGACATGCCGATCCTGGGCACCGTGGGGGCTTACTGGAACTGCAGCGATGCCAAGGGCGGCAGTGA
TGATTCGGTGACGAGAGGCGGGTTCATGAAGACCAGGAGCAGATTTGGGCAGGTGAGCTCTTAATTAGCTTCGGCGATTT
GAGCTTTGGTTGATGATGCATTTTCCAGGCTCCAAATGTGTGGTGCTCATGATG----TTTTTTACCCATTGCAGAACTT
GGCATGA-------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G334400
AAAAA-GGACACGCGGTGTTCTCAGCAGCAGCCTTGCTCTCTTCCTGACGAGTAACGTTATGTGTCATAAGCAAAATGCT
CTTAGAA-TCAGACACCGACATGTCTTGCGCGGCTGGAATTGCGACCGATTTTTTGTCAATAGTAGTGTCTGCCTCTTGG
CATGTTAACTAACTAGCTGATGTTCCTGTCTGTCTGTCA--GTCTGATGCTGTCATCACACGCTTAACATTATTCTTGCA
TGACTTGATGTGTG------ATGGATGCTGTAATTCCAAAGTGCAAGGTTTGTCACATTCCTGTGCCCTGTTGGGCAGTT
CACTGTCATCAAAAGGGGCCTCTCTTTTTTATTTCT---GCAGAAGATGAACTTCTCATCAAAGCTCCAGTAATTTACCG
CCTTGTTCACCTCAAAAGAAAAAAAAACACCACCTTGTATGTTGTCATACAT----------------------------
------------------TTTTTTACACCTTTTATTTTAAACATCATGTGTATTGATT--TTCTTCTTGTAAATAGTTAC
TTCCTGACATGTGA------TACAAGAAAGCTAAATTCTGTACCCGCAAAAAATAAAGCTAAATTCTACACAGAAAAAGG
TTTATTTTAGGCCAAAAAAAGG--------------------------------GTAAAACAAGTTTGAGGGAAAAAAAG
AGAGAGGCAAATTTATGCCACAGGCCTGCATGGAACGCGATGCAATTCCCGCCACGCA---ACACACACACACACACAGG
ATTCCGACGGCCCGGCCCGGCCC------GCGGCCTCGGATTCCTTG--CTCCGTCATCGGATCCCATCCGTTCCGTCCG
CCCATCCAACGGTCACATGCCAGCTGGGTCAACACGACCGTTACCACTCGGGCTTTTGCCCTTTTCCCCCAACGGCAGCT
TCTCCTCG--CCCCCAAATGCCGCGCCCCCTTCACTACTACTCCTAA--GCCGCCGCTGCCGCTTCTCTTCCATCTCCCC
CAAACACCCACCCGCTTCT-------CTTCTCGCCGCCGACGAGCCACCGACGAGCCACCGACGCGCCCGCCGGGCCGGC
CATGGGCTGCTTCCTCGGCT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GCTTCGGGGGCGCC
AAGTCCAAGAAGGAGCGCCGCCACCGCCGGCGCAAGCAGCGCTCCCCCTCCCACTCCCCCTCCAAGGCCGCCCGCGACGC
CGAGGCCGCCTCCGCCGCCGCCCCGCTCCTCGCCACCCTCCTCGAGCTCAGGTTCGTTCCTTGTCCCATCGAGGATTACT
GCCAGTCTCTCTCTCTCACTGATCGGCTGCTGTTGATCCGCCTCGTGATTGACCGATGGATTCCGGCTTGATTTTTGTCT
GG-TTAATTAGGGGTTCGATCTCCGTTTGATTTTTT--CTGGTTGATTAGGGATTCGGCCGATGACCTGTGCCTGGCCGT
CGTCGCCAAGAAGAAGGTGACGTTCGACCCCAACGTGACCGCCTACGAGGCGCCGCCGATCCCCGAGGGCGAGGAGGCCG
CGACA------GAGGAGGAGGAGGAGGGCCGCGCCGCGGCGGGCGGCGAGGAGGCGTGGACGCTGCTGGGGCCCGAGTGC
GCGAAATCAGAGGCGTTCCCGCTCAACCACAGGTACGGCAACTGCGCCGGCGCCGACGACGACAGCGACTACGAGGACTG
CTACGACGACGACGACGACGATGAGTACGATGACGATGAGGACGACGAAGAGGAGGAGGGC------TTGGACGGGATCG
ACGAGTGCGCGGTGGACGACGACGAGGAGCAAGGCGGGCTTCTGGGCATCGCGCGCGGCGAGGAGGAGGCGTGCGAGTCG
CTCTTCCTGCTCCCGGCGCCCAGGACCACCAAGGACA---------------GCGCCGCTGCCGCTCAGACCGGAGCAGC
AGC---------------TGAGGCAACCGCCGCGCTCAGCTCGGTGGAGAACTTCAGCCAGTGGAAGGACG---CCAAGC
CACACACCGCCGCGCCCAAGGATTCAGAGAAGGAGAACATCGTCAGGCTCTCCGACT---CGGCGACGGCCCCTGATATG
AAAAAAGAGAAGCCGGCGGTGAGCTGGGACTACACCCCCAGGACGCCGAGCAAGCAGGAGGCCTCGGTGGACGCGAGCCT
CTCCACGTGGCTGGGCTCCTCGGGGACGCCGGAGAGCAACTACTCGGTGCGGTCCTACTCGCCGATCAGCCGGGAGGACC
GGCCCATCCTCGGCGCCCTCACCGTGGAGGACATCAAGATCTCCTCGGCCAACTCGTCGCCGAGGCGGTCGCGGTCCCCG
AGCCCGAGCCCCGACGACATGCCGATCCTGGGCACCGTGGGGGCTTACTGGAACTGCAGCGATGCCAAGGGCGGCAGTGA
TGATTCGGTGACGAGAGGCGGGTTCATGAAGACCAGGAGCAGATTTGGGCAGGTGAGCTCTTAATTAGCTTCGGCGATTT
GAGCTTTGGTTGATGATGCATTTTCCAGGCTCCAAATGTGTGGTGCTCATGATG----TTTTTTACCCATTGCAGAACTT
GGCATGATGAAAATGGTGAACCGCCCTCCAGAATTATGATGAAATAGGCTAGAAAGAAGAGCTGTGAATTAAGAGATAAG
ATACAGTGTGAGTGAGTGAGTGAGTGAGTGAGAGATTGTTCCATGAGTGAGAGATTCTTTTATGTGTTTGTAAACATGTC
ATGTCAGCATTCTATATAGCATGGTATTCTTTT-----------------------------------------------
--------------------------------------------------------------------------------
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-------------------------TGTGTGGCATTGTCAATATGATGTGTACTATTATTTCACCCTT-TGTCAATAATC
AATATTTTGTACTACTG------------------------------------------CATTTGAGTTCAGTTTCACCT
TTCTGAACTGTGACTGCCTGCCTGCTTTTCTTCTTCTG------------------------------------------
--------------------------------------------------------------------------------
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---------------------------AACTTTTGTTATC-TGCAGCACCTCACAACACTATCTTGGAGGCTTAAGATTA
ACATCATGATAATCTGTACATACATGCAAGCTCTGTAGCTCACATGAACATGGACCTAGGTTTATCATTAACATATGAGC
AGAAGATTTCAGATAATATCATGCAAACTTGTCTTGCCCTGCAGTGGAAAATGAGAACTATACAGCTTTTGCATTTCAGA
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------GTGTGGCATTGTCAATATGATGTACTAT
TATT---------------------TCAGTATGATTA----------CATTTGAGTTCTTTTTCAGTTTTCACCTTTCTG
AACTGTACCTGCCTGCTTT----TCATGTTCTGAACTTCAGTTATCTGCGGAACCTGACAACACTGT----ATTGGAGGC
TTAGGTTTAGCAATCATGATAATCTGTAGTACATTACTAAAGCATAAATGTAAGCATACAACTCTGTAGCTCACATGAGT
AAGGACCTAGGATTCCTATTAACATCTGCA------------------------AAGAAGAAAGTGCAGAAGATTTCAGA
TGT-----------------------------------------------------------------------------
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----------------CTTCTCTTCCCCTGCAGTGAAAAAATGTGAACTATACAGCTTTTGCAAACGCTTCAAGCGATCA
ATTATTTGCCTCCAACACACACATAATCCACTTGTCCACACAAAATAGAGTCGAGTCTGCAGTAGTAGCGGTACAAACTG
CAAAGCCTAGCGTCACCGCCTCTTGGGGAGCTGGAACGC
>chr5A_1
AAAAAGGGACCCGCAGCGTTGGCAGCAGCAGCCTTGCTCTCTTCCTGACGAGTAACGTTATGTGTGATAAGCAAAATGCT
CTTAGAAATCAGACACGGGCATTT-TTGCGGGGTTGGAATTGCGACCGA-TTTTTGTCAATAGTA---TCTGCCTCTTGG
CATGTTAACTAACTAGCTGATGTTCCTG----TGTGTGTGTGTCTGTTGCTGCCATGACACGGTTAACATTATTGTTGCA
TGAATTGATTGATGCCATCAATGGATGCTGTAATTGCAAAGTGCAAGGTTTGTCACATTCATGTGCCCTATCAGGCAGTT
CACTCTTATCAAAAGGGACCTCTTTTTTTTTCTTCTCCGGCAGAATATAAGCTTGCTCAGAGCT---CAGTAATTTACCA
CTTCCTCTGCTCATAAATATAAGATGTTTTAGACTTGTAAGTATAATACGTTATTTACAAGTCTCAAAATGTCTTACATT
TAGCTTTCTTATCATACATTTTTGACACCTTTTTTAGCACTCTGTCTGTGTGCTGATATTGTGTAAATCAGTA-------
-TCCTGACATGTGTAACTAGTACAAGAAAGCTAAATGCTACG--------------------------CACACAAAAAGG
TTTATTTTATTAGGCTAAAAAAGGGTAAAACAAAATTAAGTTTTTTTTAGGGGAGTAAAACAAATTTAAGAGAAAAAAAA
AGGGTAAATG---TATGCCACAGGCCTGCATGCAGTGCGACGCAATTCCCGCC----------ACACAAACGCACATAGG
ATTCCGACGGCCCGGCCCGGCCCATTGTGGCGGCCTCGGATTCCTTG--CTCCGTCATGGGATCCCATCCGTTCCGTCCG
CGCATCCAACGGTCACATGCCAGCTGGGTCAACACGACCGTTACCACTCGGGC-TTTGCCCTTTTCCCCCAACGGCAGCT
TCTCCCCTCCCCCCCAAATGCCGCGCCCCCTTCACTACTACTCCTAGCCCACA----------TTCTCTTCCGTCTCCCC
CACCCCAAACATCCACCTCGCCGCCGCCGCTTCCCGCTCGCCTGCG-CCGACAAGCCACCGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCGGGGGCGAC
AAGTCCAAGAAGGAGCGCCGCCACCGCCGCCGCAAGCAGCGCTCCCCCTCCCGCTCCCCCTCCAAGGCCCACCGCGACGC
CGA------------CGCCGCCCCGCTCCTCGCCACCCTCCTCGAGCTCAGGTTCGATCCTTGTCCCATCCGGTGTTACA
GCTGGTCTCACTCACTGAC----CGGCTGCTGTTGG----------------CCGATCGATTTCGGTTTCATTTTTCTGG
TTATAAATTAGGGATTTGATCTCTGTTTT-TTTTTT--CTGGTTGATTAGGGATTCCGCCGATGATCTGTGCCTGGCCGT
CGTCGCCAAGAAGAAGGTGACGTTCGACCCCAACGTGACGGCCTACGACGCGCCGCCGATCCCCGAGGGCGAGGAGGCCG
CGACA------GAGG---AGGAGGAGGGCCGCGCCGCGGCGGGCGGCGAGGGGGCGTGGACGCTGCTGGGGCCCCAGTGC
GCGAAATCCGAGGCGTTCCCGCTCAACCACAGGTACCGCAACTGCGCCGGCGCCGACGACGACAGCGACTACGAGGACTG
CTACGACGA---CGACGACGATGAGTACGATGACGAC---GACGAGGAGGAGGAGGACGGC------TTGGATGGGATCG
ACGAGTGCGCGGTGGACGACGACGAGGAGCACGGCGGGCTGCTGGGCATCGCGCGCGGCGAGGAGGAGGCGTGCGAGTCG
CTCTTCCTGCTCCCGGCGCCCAAGACCACCAAGGACA---------------GCGCCGGC------CAGACTGGAGCCGC
AGC---------------CGAGGT---------GTTCAACTCGGTGGAGAGCTTCAGCCAGTGGAAGGACGCCACCAAGC
CTCACACCGCCGCGCCCAAGGATTCGGAGAAGGAGAACTTGGTCACGCTCTCCGACGACCCGGCGACCGTCCCGGCCATG
AAGCAAGAGAAGCCGGCGGGGAGCTGGGACTACACCCCGAGGACGCCGAGCAAGCAGGAGGCGTCGGTGGACGCGAGCCT
CTCGACGTGGCTGGGCTCCTCGGGCACGCCGGAGAGCAACTACTCGGTGCGGTCCTACTCGCCGATCAGCCGGGAGGACC
GGCCCATCCTCGGCGCCCTCACCGTGGAGGACATCAAGATCTCGTCGGCCAACTCGTCGCCGAGGCGGTCGCGGTCCCCG
AGCCCGAGCCCCGACGACATGCCCATCCTGGGCACCGTGGGGGCCTACTGGAACTGCAGCGGCGCCAAGGGCGGCCCTGA
CGATTCGGTGACGAGAGGCGGGTTCATGAAGACCAGGAGCAGATTTGGGCAGGTGAGCTCTTA----------GCGAATT
GAGCTTTGGTTGATGCA----TTTGCGGGCTCCAAATGTGTGGTGCTCACGATG----TT-TTTACCCGTTGCAGAACTT
GGCATGATGAAAATGGTGAACTGCCCTCCTGAATTATGATGAAATAGGCTAGAAAGAAGAGCTGTGAATTAAGAGAGAAG
ATACAGTG------AGTGAGTGAGTGAGTGAGAGATTGTTCCATGAGTGAGAGATTCTTTTATGTGTTTGTAAACATGTC
ATGTCAGCATTCTATATAGCATGGTATTCTTTT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGTGTGGCATTGTCAATATGA--TGTATTATTGTTTCACCCTTCTGTCAATAATC
AGTATGTGAT----------------------------------------------GTACATTTGAGTTCGTTTTGACCT
TTCTGAACTGTACCTGCCTGCTTTTCATTCAGTTATCTGC--------------AAACGGATTCCCTTCACCTGAACAAA
CTGTCCAGTTTTCCCCACGATCCAGTTTTCTCTTTGGTGAGCGACGAACAGCGCGAGGATCCACTTCCCATCTTCAACCG
CCGGCGGCGAGCCCGTGGGATCTTCCTGCTTCCATCTGCTGCTCCGGCAGCCCGTG--------------GGAGCTTCTA
CTTCGGCCTGTAGATAGTTTAGGAATA-----AGTATGTTTTTGTCACTCAAATTCCCCGAAAGTATAGACTTGATTTAT
CAAGTTTTTTGGTATA-ATTTGGTCCTTCAAGTCTCAAAACCGAAT-AAGTTTGGTCCAAAATCAGATTTTAACCAGATT
TGACCGGGTTTGACCA---------GGTTTGATGAACGAACAGTAAATTCAAAAAAATAGCAATA--AATATTAAAAAAC
TCTGAAATTTTGTGGCAACCAAGATGCTTGGGTGCATGGAAATTTGTGTGGTGTTTCAACATCCGAAGATCTCCTCGCAA
AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCCGAAGATCTCGTGGCAAAAACAACA
ACTAATTTTGGCTA-----AAAAAGCCAAAATTTGTTTTT-TAGAGCTCCTCAGATGTTATTTGACCACAAACATTTACA
CGCACCAATCGCACCCAAGCATGTTGGTTGTCACAAAATTTTAGA------------TTTTTTGAAATTTACTGTCCATC
GGTCAAACGTGGTCAAGCCCGGCCGAACTTGGTCAAACCTAGTCAACCCCCAGTCAATGTGCTAAAAAATCAGGTTTTGG
ACCATACTTATCCGGTTTTGAGACTTGAAGGACAAAATATATACCTAAAAAATCTTGAAAAACAAGTCTATTTTTTTGAG
GAACTTGAGGGACAAAAACA-------------TAAGAATAGTTTTCACGGCTTCGATGACGGCGACAGCGTCACTCCGT
CGAATAAATTTGCCTCGACGCCCACCATCTCAGTGGTGCTCTCCTGGGAAGCGCCGGAAGGTCGATGGCTCGTGTTCCTC
TCTGGTTAGTCGGATCAGCGAGGCTAGTCTTTTCACATTCGCGGTGGACGTGTTCTTCGACCGAC-AAGCGACTCTGGTT
GCGATGGTGCTCCTTTGGATTTGGTTGTGATGGATCTTCATCTCCTTCCACTCCGGCGGTATTTCGTCGACAGTGGGTGA
CAATGGTGGATGGTTGCTTTTCTGTGCAGAGGGATAGAAAGTAAGAGCTGTGAATTAAGAAGATACAGTGTGAGTGAGTG
AGTGAGAGATTGCTCCATGGGAGAGAGAGCTTTCTATTCTTTTATGTGTTTGTAAACATCTCAGCATTC-----------
--------------------------------------------------------------------------------
-----------------------------TATATAGCATGGT-ATTCTTTTTCTGTGGCATTGTCGATATGATGTTCTAC
GTATTATGTCACCCTTCTGTCAATAATAGAGGTAGAATGTACTGCTGCATTTGAGTTC-------GTTTTCACCTTTCTG
AACTGTACCTGCCTACTTT----TCATGTTCTGAACTTCAGTTATCTGCGGAACCTCACAACACTGTCTGTATTGGAGGC
TTAATATTAGCATCACTAGT---------------------GCATACATGCAAGCATATAACTCTGTAGCTCACATGAAT
ATGAACCTAGGATTCCTATTAACATCTGAGATGATGCATTAGCATCTGCAATACAAGAGGAAAGAGCAGAAAATTTCAGA
TAG-----------------------------------------------------------------------------
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-----TATCAGGCAAACTTCTCTTCCCCTGCAGTGAAAAATGGGAACTATA------TTTGCAAACGCTTCAAGCGATCA
ATTATTTGCTTCCAACACACACATAATCCACTTGTCCACACAAATTAGAGTCTGCACCTGGCTGCAAATAGTGGTGCATG
CAAAGCCTATTGTCACCTCCTCTTTGGGAGCTGGAACGC
>chr4B_57
---------------------------------------------------------TTATGTGTGATAAGCAAAATGCT
CTTAGAA-TCAGACACGGGCATTT-TTGCGGGGCTGGAATTGCGACCGATTTTTTGTCAATAGTA---TCTGCCTCTTGG
CATGTTAACTAACTAGCTGATGTTCCTG----TCTGTCA--GTCTGATGCTGTCATCGCACGCTTAACATTATTTTTGCA
TGAATTGATGCC------CAATGGATGGTGTGATGGCAAAGTGCAAGGTTTGTAACATTCTTGTGCCCTGTTGGGCAGTT
CACTGTCATCAAAAGGGACCTCTTTATTTT-------CGGCACAAGATGAAGTTGCTCAGAGCC---CAGTACTACCTT-
---------------------------------------------------T----------------------------
------------------TTTTTTACACCCT---TTTCAAACATTTTGTGTATTGATTCTTTTTTGTTAAAAATCATCAC
TTCCTGCCATGTGCACG----ACAAGAAAGCTAAAGTCTACAAATTTACTGTTTCCTTGTTACGTATATGTGTCA-----
--------------------------------------------------------------------------------
-----------------------------------------GCAATTCCCGCCACACACACACACACACACACACACACA
CATACGACGGCCCGGCCCATTCTGGTCTCGGTCCCCACGGGTCAGGAGCCTCCGTCCTCGGATCCCATCCGTTCCGTCCG
CCCATCCAACGGTCACATGCCAGCTGGGTCAACACGACCGTTACCACTCGGGCTC-TGCCCTTTTCCCCCAACGGCAGCC
TCTCTCCT--CCCCCAAATGCCGCGCCCCCTTCACTACTACTCCTAGCCGCTGCCGCTGCCGCTTCTCCTCTCTTCTC--
--CCCGAAACATCCACCTCACCGCCGCTTCTCGCCGCCGACGACCGACG-------------------CGCCAGGCCAGC
CATGGGCTGCTTCCTCGGCT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GCTTCGGGGGCGCC
AAGTCCAAGAAGGAGCGCCGCCACCGCCGCCGCAAGCAGCGCTCCCCCTCCCACTCCCCCTCCAAGGCCGCCCGCGACGC
TGAGGCCGCCGCCGCCGCCGCCCCGCTCCTCGCCACCCTCCTCGAGCTCAGGTTCGTTCCTTGTCCCATCGAGGGTTACT
GCCAGACTCACTCACTGATTGATTGGCCGTTGTTGATCTGCTTCGTGATTGATTGATCGA--------------------
---------------TCGATCTCGGTTTGATTTTCTTCCTGGTTGATTAGGGATTCGGCCGATGACCTGTGCCTGGCCGT
CGTCGCCAAGAAGAAGGTGACGTTCGACCCCAACGTCACGGCCTACGACGCGCCGCCCATACCCGAGGGAGGAGAGGAGG
CGACTGAGGCGGAGG---AGGAGGAGGGCCGCGCCGCGGCGAAGGCCGAGGAGGCGTGGACGCTGCTGGGGCCCGAGTGC
GCCAAGTCCGAGGCGTTCCCGCTCAACCACAGGTACGGCAACTGCGCCGGCGCCGACGACGACAGCGACTACGAGGACTG
CTACGACGA---CGACGACGATGAGTACGAGTAC---GAGGACGACGAGGAGGAGGAGGACGATGATTTGGACGGCATCG
ACGAGTGCGCGGTGGACGACGACGAGGAGCACGGCGGGCTGCTGGGCATCGCGCGCGGCGAGGAGGACGCGTGCGACTCG
CTCTTCCTGCTCCCGGCGCCCAAGACGTACGCCAAGGACAATGCCGCTACCGGCGCCGGC------CAGACTGGTGCCGC
AGCTGAGGCGCCCGCAGCCGAGGT---------GCTCAACTCGGTGGAGAACTTCAGCCAGTGGAAGGACACCACCAAAC
CTCACACAGCCGTGACAAAGGATTCAGAGAAGGAGAACTTGGTCACTCTCTCCGACGACCCGGCGACCGCCCCGGCCATG
AAGCAAGAGAAGCCGGCGGTGAGCTGGGACTACACCCCCAGGACGCCGAGCAAGCAGGAGGCCTCGGTGGACGCGAGCCT
CTCCACGTGGCTGGGCTCCTCGGGGACGCCGGAGAGCAACTACTCGGTGCGGTCCTACTCACCGATCAGCCGGGAGGACC
GGCCCATCCTCGGCGCCCTCACCGTGGAGGACATCAAGATCTCCTCGGCCAACTCGTCGCCGAGACGGTCGCGGTCCCCG
AGCCCGAGCCCCGACGACATGCCGATCCTCGGCACCGTGGGGGCCTACTGGAACTGCAGCGGCGCCAAGGGCGGCAGTGA
TGATTCAGTGACGAGAGGCGGGTTCCTGAAGACCAGGAGCAGATTTGGGCAGGTGAGCTCTTA----------GCGATTT
GAGCTTTGGTTGATGCA----TTTGCGGGCTCCAAATGTGTGGCGCTCATGATGTTACTT-TTTACCCAATGCAGAACTT
GGCTTGATGGAAATGGTGAACTGCCCTCCAGAATTATGATGAAATAGGCTAGAAAGAAGAGCTGTGAATTAAGAGAGAAG
ATACAGTG------------TGAGTGAGTGAGAGATTGTTCCATGAGTGAGAGATTCTTTTATGTGTTTGTAAACATGTC
ATGTCAGCATTCTATATAGCATGGTAATTCTTTTTGTGTGGCACTGTCAATATGATGTAGTACTATTATTTCACCCTTTG
TCAATAATCAATATTTTGCACTGCTTGCAAGCTTTTCTTCTTCTGAACTTCTGTTATCTGCAGCACCTCACAACACTATC
TTGGAGGCTTAAGATTAACATCATGATGATCTGTACATACATGCAAGCTCTATAGCTCACAACATGAATATGGACCTAGG
TGGTTTATCATTAACATCTGAGCACAAGATTTCAGATAATATCATGCAAACTTGTCTTCCCCTGCAGTGGAAAATGAGAA
CTATACAGCTTTTGCATTTCAGAGGTGTGTGGCATTGTCAATATGA--TGTACTATTATTTCACCCTT-TGTCAATAATC
AGTATGATGTACTAAAGTTAGTACAAAGTTGAGTCATCTATTTTGAAACGGAGGGAGTACATTTGAGTTCGTTTTCACCT
TTCTGAACTGTACCTGCCTGCTTTTCATGTTGTGAACTTCAGTTATTATCTACAAAAAGGATTCCCTCCACCCGGACAA-
CTGCCCAGATTTCCCCGCGACCCGGTTTTCTCTCTGGTGAGCGACGAACAGCGCGGGGATCCACTTCCCATCTTCAACAG
CCGCCGGCGAGCCTGTGGGATCTCCCTCCTTCCATCTGCTGCTCCGGCAGCAGGGAGGGATGGAGATCCCGGTGCTTCGG
CTTCGGCCTATAGATAGTTTAGGAATGAGAATAGTATGTTTTTGTCACTCAAATTCCCCAAAAGTATAGACTTCGTTCAT
CAAGTTTTTTGGTATACATTTGGTCCTTCAAGTCTCAAAACCGGATAAAGTTTGGTCCAAAACTAGATTTTAAGCACG-T
TGACCGGGTTTGACCATGTCGACCAGGTTTGAGGGACGAACAATAAACTAAAAAAATGGCAAAACATAAAATAATAAAAC
TCACAAATTTTGTGGCAAGCAAGATGCTTGGGTGCGTGAAAATTTGTGTGGTTATTTGA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CATCCAAGGAGCTCGTGGCGAAAAAGAAA
AACTATTTTGGCTCACAATAAAAAGCCAAAACTTTTTTGGCTAGAGATCATCGGATGTTATTTGACAACAAACATTTACG
TGCACCAAGCGCACCCAAGCATGTTGGTTGTCACAAATTTTCAGATTTTTTTGCTATTTTTTTTGAACTTACTGTTCATA
GGTCAAACATGGTCA--------------------AACCCGGTCAAACCCCGGTCAACATGCCCAAAAATCAGGTTTTGG
ACCAAGCTTACCCGGTTTTGAGACTTGAAGGACCAAATATATACCCAAAAAATCTTCAGGGACAAGTCTATACTTTTGGA
GAACTTGAGGAATCAAAAGCATATTTTTCTCTCTAGGAATGGTTTTGGCGGCTTCCATGGTGACGGCAGCGTTGCTTCGT
CGAATAAATTTGCCCATCTCGATGGTGCGGGCAGCGCCGGC-----------------AGGTCGATGGCTCGTGTTCCTC
TCTGGTTAGTCGGATCAGTGAGGCTAGTCTTTTCACATTCGCGGTGGACGTGTTCTTCGGCTGACAAAGCGACTCTGGTT
GCGATGGCGCTCCTTCGGATTTGGTTGTGATGGATCTTCATCTCCTTCCACTCCGGCGGTATTTTGTCGACAGTGGATGA
CAATGGTGGATGGTTGCTTTTGTGTGCAGAGGGATAGAAAG-AAGAGCTGTGAATTAAGAAGATACAGTGTGAGC----G
AGTGAGAGATTGTTCCATGAAGGA-AGAGCTTTCAATTCTTTTATGTGTTTGTAAACATGTCCGCATTCTACTCCCTCCC
TTCCCAAATATAAGTCTTTTTTAGAGATTTTAACAAGGGACTATTATACAGAGCAAAATGAGTGAATCTAACAAGGGACT
ATATCTGGAGTATTTAGGAACGGAGGAAGTATATAGCATGGTGATTTTTTGTGTGTGGCATTGTCAATATGATGTATAC-
-TATTATTTCACCCTTTGTCAACAATCAATATGATTA----------CATTTGAGTTC-------GTTTTCACCTT-CTG
AACTGTACCTGCCTGCCTGCCTCTCATGTTCTGAACTTCAGTTATCTGCGGAACCTCACAATACCATCGACTATGCGGCC
AAATCCGGTGGTAGGGGTGGGAGATGTGCGACGGTTTGGATGAAAATCCTGCTCGTCTTCAGTCGGAGCTGACGACGACG
GCGCCAGTGGGTGTCGTTTCCCTCCTTAGAGGCATCGTCAAGGTGTGTCGGCATCTCCCCTTCTTGATCGGGTTGGGGTC
TCTGGGCGAAAGTCTTGGTCTGTTGCAGGACCGGCGATGGTGGCGTTTGGCGTCGTTACATTGTTGAGAGCATCGAGGGT
GGAGACTTGGCCTTATGGTCATGTGAGGTGGTTCTCCGGTGCTTGCCGCTGGTTCAAGTTGATCTTCGAGGGCGCTAAGT
ACACAGCTGCCGGTGCTCCAAGAGGATGCCTTTTTCCGGTCCCGACCAAGTCCCGCTATCCACTTGCCGTCTCCTTTTAG
GCATTCAAGGGTGGATAGTGCGTTGGCAAAGTATGGCCGGCTGAAGTTATTGCTCCTTGTAGTGTTTGGCGTTTGTGTGA
CGCGGCTAGATGATTGATTTAGGACAGGCCCTTTGCGTTGTGTTTGTACTTGTTGTGGTGGCTAATCTTTTGATTAACTT
TCAGATATGAGGCGAACTTCTCTTCCCGTGCAGA-------------------AGCTTTTGCGAACGCTTGAAGCGATCA
ATTATTTGTCTCCCACACCACACACACATAA---TCCACACGAATTAGAGTCTGCAACTGGCTGCAAATAGCGGC----G
CAAAGCGTAGCGTCACCGCCTCTTGGGGAGCTGGAACGC
>SNPs
----------S---S-S---SS-------------------------------------------S--------------
----------------S-S---S-S-----S----------------------------------SSS------------
----------------------------SSSS------------------------------------------S-----
---S------SS-----------------------S------------------------S-------------------
-----------------S-----S------SS----------------------SSSSSS-SSSSSS------------S
-S-SS-SSS-SSSS---S-S--S-SSSSSSSSS------S--SSSSSSSSS-----------------------------
---------------------------------S---S------SS----------------S--S--SS----SS-S--
-------------S-------------------------SS-SSSSS-SSSSS-SSSSS-S-SS-S------S-------
---------SSSSSSS----SS-----------------------------------------S---S--S--------S
--S-SSSSSSSSS-------------------S-SS----S--------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-S--------------------------------------S-------------------------S-------
--SS-SSSSSSS-SSSSSS--------------------------S------S--------SSSSSSS----S----S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
----------S---------------------------------------------------------------S-----
---------S---S--S---------------------S--S---------------S----S---S--S------S-SS
SS--S--------S---------S--------------------------------------------------------
---------------------------------------S--------S-------------------------------
---------------SSS--------------------------------------------------------------
--------S-----------------------------------------------------------------------
---------SSS------------------------S-----------S-------------------------------
-------------------------------S--------S---------------------------------------
----------------------S-----------------------------------SSSSSSSS-----S-----S--
------------------S----SSSSSSSSSS-----S-----------------------------------------
-S------------------------------------S-S----S----------S----------S-----S-SS---
--SS----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S----------------SS-----------------
---------------------------------------------------------------SSSSSSSSSS-------
---------------SSSSSS---S-S---------------------------------S-------------------
---------------------S------------------------------------------------------S---
--------SSSSSS------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------SS--------------------------------
-S---S--------SS------------------------------------------------------SS--------
-----------SS--------S-SSSS----SS-SSSS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------SS------S-S--SS---S-----S-SSSSSS-SSSSS-SSSSS-SSSSS-
SSSS-SSSSSSSS-SSS-SSSSSS--SSS-SSSSSS-SS-SSSSSSSSSS-S-SSS-SSS---SSS---S--SSS-S-S-
S-SSS-SSSSS-SS--SSS-SSS-S------SSSSSS----SSSSSSSSSSS-SS---SSSS--SSSSS-SSSS--SS-S
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
SSS-------------------------------------------------------SSSSSSS---------------
--------------------------------------------------------S-----------------------
---SSS-------SSS-SS-S-SS---SSS--SS-SSSS-S-----S---S-------S-------------------S-
-S-S------------------------S-----------------------------S---------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------SS-SS-SSSSSSS---------------------------
--------------------------------------------S-------SSSS-SSSSS-SSS-SSS--SSSSSS--
---------------------------------------
>forward_1048
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TTCCATCTCCCC
CAAACACC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_4512
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TCTTGCCCTGCAGTGGAAAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
