Multiple sequence alignment - TraesCS4D01G334300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G334300 chr4D 100.000 5299 0 0 1 5299 491715385 491720683 0.000000e+00 9786.0
1 TraesCS4D01G334300 chr4D 89.835 364 25 5 43 400 490672994 490673351 1.740000e-124 457.0
2 TraesCS4D01G334300 chr4B 92.714 3829 158 44 46 3812 630632355 630636124 0.000000e+00 5413.0
3 TraesCS4D01G334300 chr4B 87.116 1172 76 34 3802 4952 630636584 630637701 0.000000e+00 1258.0
4 TraesCS4D01G334300 chr5A 95.120 3053 120 10 624 3660 672343584 672340545 0.000000e+00 4785.0
5 TraesCS4D01G334300 chr5A 88.185 1278 82 31 3735 4959 672340548 672339287 0.000000e+00 1459.0
6 TraesCS4D01G334300 chrUn 86.082 661 66 17 2658 3303 49245415 49244766 0.000000e+00 688.0
7 TraesCS4D01G334300 chr7B 92.500 40 2 1 68 107 336837217 336837255 7.410000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G334300 chr4D 491715385 491720683 5298 False 9786.0 9786 100.0000 1 5299 1 chr4D.!!$F2 5298
1 TraesCS4D01G334300 chr4B 630632355 630637701 5346 False 3335.5 5413 89.9150 46 4952 2 chr4B.!!$F1 4906
2 TraesCS4D01G334300 chr5A 672339287 672343584 4297 True 3122.0 4785 91.6525 624 4959 2 chr5A.!!$R1 4335
3 TraesCS4D01G334300 chrUn 49244766 49245415 649 True 688.0 688 86.0820 2658 3303 1 chrUn.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.032267 GATGTACTCCCGCCTAGCAC 59.968 60.0 0.00 0.00 0.00 4.40 F
833 866 0.177141 GATTCACCGATTCCCGTCCA 59.823 55.0 0.00 0.00 36.31 4.02 F
1045 1081 0.657312 CTCGTGCAACAGCAAGAACA 59.343 50.0 7.44 0.00 44.09 3.18 F
2971 3027 0.104934 ACTGAGGACTTGGACCACCT 60.105 55.0 1.74 1.74 37.04 4.00 F
3353 3424 2.224769 GGGACAGGGTTCTCATTTGTCA 60.225 50.0 5.44 0.00 39.81 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1655 0.741915 AGTTCGCCTAGCTAGCTGAC 59.258 55.000 27.68 14.59 0.00 3.51 R
2656 2710 2.167281 GGTAGGGTAAAGGTCCGAAGAC 59.833 54.545 0.00 0.00 42.73 3.01 R
2992 3048 1.341080 AACAGGGCATTTTCAGGTGG 58.659 50.000 0.00 0.00 0.00 4.61 R
4151 4716 0.697658 TCTGTGATGGGTGCATGGAA 59.302 50.000 0.00 0.00 0.00 3.53 R
5249 5848 0.239613 TGTGTGTGTGTGTGTGTTGC 59.760 50.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.940723 CGATGTACTCCCTCCGTTC 57.059 57.895 0.00 0.00 0.00 3.95
19 20 0.384669 CGATGTACTCCCTCCGTTCC 59.615 60.000 0.00 0.00 0.00 3.62
20 21 1.481871 GATGTACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
21 22 1.409427 GATGTACTCCCTCCGTTCCAG 59.591 57.143 0.00 0.00 0.00 3.86
22 23 1.255667 TGTACTCCCTCCGTTCCAGC 61.256 60.000 0.00 0.00 0.00 4.85
23 24 2.050350 TACTCCCTCCGTTCCAGCG 61.050 63.158 0.00 0.00 0.00 5.18
24 25 2.488771 TACTCCCTCCGTTCCAGCGA 62.489 60.000 0.00 0.00 0.00 4.93
25 26 2.363795 TCCCTCCGTTCCAGCGAT 60.364 61.111 0.00 0.00 0.00 4.58
26 27 2.202932 CCCTCCGTTCCAGCGATG 60.203 66.667 0.00 0.00 0.00 3.84
27 28 2.579201 CCTCCGTTCCAGCGATGT 59.421 61.111 0.00 0.00 0.00 3.06
28 29 1.672854 CCCTCCGTTCCAGCGATGTA 61.673 60.000 0.00 0.00 0.00 2.29
29 30 0.527817 CCTCCGTTCCAGCGATGTAC 60.528 60.000 0.00 0.00 0.00 2.90
30 31 0.456221 CTCCGTTCCAGCGATGTACT 59.544 55.000 0.00 0.00 0.00 2.73
31 32 0.454600 TCCGTTCCAGCGATGTACTC 59.545 55.000 0.00 0.00 0.00 2.59
32 33 0.527817 CCGTTCCAGCGATGTACTCC 60.528 60.000 0.00 0.00 0.00 3.85
33 34 0.527817 CGTTCCAGCGATGTACTCCC 60.528 60.000 0.00 0.00 0.00 4.30
34 35 0.527817 GTTCCAGCGATGTACTCCCG 60.528 60.000 0.00 0.00 0.00 5.14
38 39 3.440151 GCGATGTACTCCCGCCTA 58.560 61.111 13.39 0.00 42.77 3.93
39 40 1.286260 GCGATGTACTCCCGCCTAG 59.714 63.158 13.39 0.00 42.77 3.02
40 41 1.286260 CGATGTACTCCCGCCTAGC 59.714 63.158 0.00 0.00 0.00 3.42
41 42 1.452953 CGATGTACTCCCGCCTAGCA 61.453 60.000 0.00 0.00 0.00 3.49
42 43 0.032267 GATGTACTCCCGCCTAGCAC 59.968 60.000 0.00 0.00 0.00 4.40
43 44 0.397254 ATGTACTCCCGCCTAGCACT 60.397 55.000 0.00 0.00 0.00 4.40
44 45 1.035932 TGTACTCCCGCCTAGCACTC 61.036 60.000 0.00 0.00 0.00 3.51
54 55 1.202580 GCCTAGCACTCGTCATTGGAT 60.203 52.381 0.00 0.00 0.00 3.41
56 57 2.477825 CTAGCACTCGTCATTGGATGG 58.522 52.381 0.00 0.00 0.00 3.51
86 87 2.338500 GTTGTCTCCGGTGAATCTCAC 58.662 52.381 7.99 0.00 46.23 3.51
100 101 0.179084 TCTCACGGGATTCGATTGGC 60.179 55.000 0.00 0.00 42.43 4.52
110 111 1.651987 TTCGATTGGCGTCTTGGATC 58.348 50.000 0.00 0.00 41.80 3.36
111 112 0.179084 TCGATTGGCGTCTTGGATCC 60.179 55.000 4.20 4.20 41.80 3.36
115 116 0.400213 TTGGCGTCTTGGATCCTGTT 59.600 50.000 14.23 0.00 0.00 3.16
118 119 1.468914 GGCGTCTTGGATCCTGTTTTC 59.531 52.381 14.23 0.00 0.00 2.29
120 121 1.128692 CGTCTTGGATCCTGTTTTCGC 59.871 52.381 14.23 0.00 0.00 4.70
132 133 1.266718 TGTTTTCGCTGGTCTGCATTC 59.733 47.619 0.00 0.00 0.00 2.67
141 142 1.202639 TGGTCTGCATTCGTGTGTCTT 60.203 47.619 0.00 0.00 0.00 3.01
149 150 3.926527 GCATTCGTGTGTCTTCATCTACA 59.073 43.478 0.00 0.00 0.00 2.74
155 156 7.117241 TCGTGTGTCTTCATCTACATTTTTC 57.883 36.000 0.00 0.00 0.00 2.29
156 157 6.704050 TCGTGTGTCTTCATCTACATTTTTCA 59.296 34.615 0.00 0.00 0.00 2.69
157 158 6.792250 CGTGTGTCTTCATCTACATTTTTCAC 59.208 38.462 0.00 0.00 0.00 3.18
164 165 4.994217 TCATCTACATTTTTCACGTGAGCA 59.006 37.500 19.11 6.89 0.00 4.26
168 169 4.305989 ACATTTTTCACGTGAGCATTGT 57.694 36.364 19.11 17.17 0.00 2.71
172 173 3.332761 TTTCACGTGAGCATTGTGTTC 57.667 42.857 19.11 0.00 35.20 3.18
174 175 2.284190 TCACGTGAGCATTGTGTTCAA 58.716 42.857 15.76 0.00 39.27 2.69
178 179 2.223456 CGTGAGCATTGTGTTCAAACCA 60.223 45.455 0.00 0.00 39.27 3.67
243 246 8.268850 ACAAACAATATCCTAGTGTCATTCAC 57.731 34.615 0.00 0.00 46.46 3.18
256 261 6.536731 GTGTCATTCACATCAGGATCATAC 57.463 41.667 0.00 0.00 45.51 2.39
265 270 6.156775 TCACATCAGGATCATACAAAGAAGGA 59.843 38.462 0.00 0.00 0.00 3.36
279 284 6.799512 ACAAAGAAGGAAAGTTGACAATGAG 58.200 36.000 0.00 0.00 0.00 2.90
300 305 2.424812 GGATATGATTGCCACCCTGGTT 60.425 50.000 0.00 0.00 40.46 3.67
389 398 5.919348 ACAAGAATATCCCCATCATCAGT 57.081 39.130 0.00 0.00 0.00 3.41
395 405 9.887862 AAGAATATCCCCATCATCAGTAAAAAT 57.112 29.630 0.00 0.00 0.00 1.82
442 455 6.531948 CAGGAAGTAAAGGAGATCGTAACAAG 59.468 42.308 0.00 0.00 0.00 3.16
446 459 6.396450 AGTAAAGGAGATCGTAACAAGGAAC 58.604 40.000 0.00 0.00 0.00 3.62
468 481 1.456518 AAGAGACAGGGGAGGGAGGT 61.457 60.000 0.00 0.00 0.00 3.85
469 482 1.382009 GAGACAGGGGAGGGAGGTC 60.382 68.421 0.00 0.00 0.00 3.85
470 483 2.365768 GACAGGGGAGGGAGGTCC 60.366 72.222 0.00 0.00 35.64 4.46
618 647 1.619669 ACCCCCACCATTCCTCCTC 60.620 63.158 0.00 0.00 0.00 3.71
619 648 1.308216 CCCCCACCATTCCTCCTCT 60.308 63.158 0.00 0.00 0.00 3.69
620 649 1.348775 CCCCCACCATTCCTCCTCTC 61.349 65.000 0.00 0.00 0.00 3.20
621 650 1.348775 CCCCACCATTCCTCCTCTCC 61.349 65.000 0.00 0.00 0.00 3.71
622 651 0.327000 CCCACCATTCCTCCTCTCCT 60.327 60.000 0.00 0.00 0.00 3.69
717 746 2.109181 CGGAAGGAATCTCCGGCC 59.891 66.667 0.00 0.00 42.75 6.13
718 747 2.109181 GGAAGGAATCTCCGGCCG 59.891 66.667 21.04 21.04 42.75 6.13
719 748 2.109181 GAAGGAATCTCCGGCCGG 59.891 66.667 39.13 39.13 42.75 6.13
720 749 4.176752 AAGGAATCTCCGGCCGGC 62.177 66.667 39.89 24.41 42.75 6.13
723 752 4.610714 GAATCTCCGGCCGGCCTC 62.611 72.222 41.01 27.32 34.68 4.70
762 791 1.454539 CAACTCCCCAGGTCCGTTT 59.545 57.895 0.00 0.00 0.00 3.60
809 842 2.262915 CTCTGCTCGTTTCCGCCT 59.737 61.111 0.00 0.00 0.00 5.52
833 866 0.177141 GATTCACCGATTCCCGTCCA 59.823 55.000 0.00 0.00 36.31 4.02
846 882 1.076332 CCGTCCATTCCGTCTTTGTC 58.924 55.000 0.00 0.00 0.00 3.18
860 896 2.019984 CTTTGTCTATCAGCTTGGGGC 58.980 52.381 0.00 0.00 42.19 5.80
969 1005 3.973267 GAGGCGCACGACCTGAGAC 62.973 68.421 10.83 0.00 37.77 3.36
972 1008 4.778415 CGCACGACCTGAGACCGG 62.778 72.222 0.00 0.00 0.00 5.28
1045 1081 0.657312 CTCGTGCAACAGCAAGAACA 59.343 50.000 7.44 0.00 44.09 3.18
1365 1404 3.696051 GCACCATGCTTCTTTTGATCCTA 59.304 43.478 0.00 0.00 40.96 2.94
1396 1441 1.143838 CCGATGCCGATGAGTTCCA 59.856 57.895 0.00 0.00 38.22 3.53
1493 1539 3.733337 GTCTCTTGTCAAGCAGGAAAGA 58.267 45.455 7.78 1.82 32.62 2.52
1537 1583 3.001634 CGAGGTTCGGTGATCAAATGATG 59.998 47.826 0.00 0.00 36.00 3.07
1601 1655 1.203052 GGGTGTCACAATCTGCCAATG 59.797 52.381 5.12 0.00 0.00 2.82
1615 1669 1.876322 CCAATGTCAGCTAGCTAGGC 58.124 55.000 18.86 13.87 0.00 3.93
1721 1775 8.438676 AGTAACATGTGGCTATAATTTCAGTC 57.561 34.615 0.00 0.00 0.00 3.51
1843 1897 4.050553 CGAACTGGTGTTGCAAAATGATT 58.949 39.130 0.00 0.00 36.39 2.57
2099 2153 2.015736 ACGCTCTTCTTACAGGCATG 57.984 50.000 0.00 0.00 0.00 4.06
2128 2182 5.467735 TGATATGTGCTGTCATATGTGAAGC 59.532 40.000 15.53 15.53 39.96 3.86
2144 2198 6.494893 TGTGAAGCTGGTTTGTATATGTTC 57.505 37.500 0.00 0.00 0.00 3.18
2249 2303 4.669206 AGTCAAGCCATGATCAGTAGAG 57.331 45.455 0.09 0.00 40.97 2.43
2580 2634 9.547753 CATTATACTGTTATGAGCTAAAGTGGT 57.452 33.333 0.00 0.00 0.00 4.16
2652 2706 2.375174 ACTGTTTTCTAGTGCCCCATCA 59.625 45.455 0.00 0.00 0.00 3.07
2656 2710 2.734755 TTCTAGTGCCCCATCATTGG 57.265 50.000 0.00 0.00 43.23 3.16
2685 2739 2.773661 ACCTTTACCCTACCCATAACGG 59.226 50.000 0.00 0.00 0.00 4.44
2760 2816 8.404107 ACAGTTTAAAGTGGCAATACAGTATT 57.596 30.769 23.54 0.00 33.62 1.89
2937 2993 6.223120 TGTCGGATTGAGGTAATATGTGATG 58.777 40.000 0.00 0.00 0.00 3.07
2971 3027 0.104934 ACTGAGGACTTGGACCACCT 60.105 55.000 1.74 1.74 37.04 4.00
2992 3048 4.514441 CCTGCATATGAATTGAGGACAGTC 59.486 45.833 6.97 0.00 0.00 3.51
3149 3209 9.817809 TTAGGTAAGCTCTGTTACTTTGATATG 57.182 33.333 0.00 0.00 33.98 1.78
3257 3326 6.459161 GGTGTAAGTTCAGTTTAACCAAGTGG 60.459 42.308 0.00 0.00 36.56 4.00
3303 3374 8.017373 TCTTTTGTTCTCAAGATATTTGCTTCG 58.983 33.333 0.00 0.00 34.88 3.79
3306 3377 4.142609 TCTCAAGATATTTGCTTCGCCT 57.857 40.909 0.00 0.00 0.00 5.52
3353 3424 2.224769 GGGACAGGGTTCTCATTTGTCA 60.225 50.000 5.44 0.00 39.81 3.58
3572 3643 4.036852 GGCATCAGCTTTACAATAGAACCC 59.963 45.833 0.00 0.00 41.70 4.11
3669 3740 9.807649 ATTTTGAAATAGACCAGATTACAATGC 57.192 29.630 0.00 0.00 0.00 3.56
3670 3741 7.936496 TTGAAATAGACCAGATTACAATGCA 57.064 32.000 0.00 0.00 0.00 3.96
3671 3742 8.523915 TTGAAATAGACCAGATTACAATGCAT 57.476 30.769 0.00 0.00 0.00 3.96
3672 3743 8.523915 TGAAATAGACCAGATTACAATGCATT 57.476 30.769 5.99 5.99 0.00 3.56
3673 3744 9.625747 TGAAATAGACCAGATTACAATGCATTA 57.374 29.630 12.53 0.00 0.00 1.90
3693 3764 7.614974 TGCATTAATATAGCCCATGCATCTAAA 59.385 33.333 0.00 0.00 44.07 1.85
3719 3797 9.041354 AGAGGTTGTATCTAGAAATCTTGAGTT 57.959 33.333 0.00 0.00 31.77 3.01
3744 3822 4.279169 CAGTTTCATGGGGCCAGTATAATG 59.721 45.833 4.39 0.00 0.00 1.90
3759 3837 7.116948 GCCAGTATAATGACAGCAGTATTAGTG 59.883 40.741 0.79 0.00 36.72 2.74
3827 4379 9.483916 TCTCTCTCTCTCAGTATATTTACTTCG 57.516 37.037 0.00 0.00 36.50 3.79
3833 4385 7.448777 TCTCTCAGTATATTTACTTCGCCTGAT 59.551 37.037 0.00 0.00 36.50 2.90
3947 4499 8.644374 TTATAGGTTTTAGAAATTGCAGGTGT 57.356 30.769 0.00 0.00 0.00 4.16
3951 4503 6.016276 AGGTTTTAGAAATTGCAGGTGTGTAG 60.016 38.462 0.00 0.00 0.00 2.74
3962 4514 9.855021 AATTGCAGGTGTGTAGTAAATAATTTC 57.145 29.630 0.00 0.00 0.00 2.17
3966 4518 9.908152 GCAGGTGTGTAGTAAATAATTTCTTTT 57.092 29.630 0.00 0.00 0.00 2.27
4102 4658 5.305585 ACGTTAATAACCCCATGCATCTAG 58.694 41.667 0.00 0.00 0.00 2.43
4142 4707 6.087555 CGTTGAACTGTAATTATGTTGGTTGC 59.912 38.462 10.28 0.00 0.00 4.17
4151 4716 8.584157 TGTAATTATGTTGGTTGCTCAAGAAAT 58.416 29.630 0.00 0.00 0.00 2.17
4158 4723 3.256558 GGTTGCTCAAGAAATTCCATGC 58.743 45.455 0.00 0.00 0.00 4.06
4169 4734 1.771565 ATTCCATGCACCCATCACAG 58.228 50.000 0.00 0.00 0.00 3.66
4230 4806 3.482156 TCCTCTAATTGCTCTGCCATC 57.518 47.619 0.00 0.00 0.00 3.51
4302 4888 7.425577 TGCATATGCTCAGTCATGTAAATAC 57.574 36.000 27.13 0.00 42.66 1.89
4346 4932 0.737715 CTTGCGCAGGTGGAGAGTAC 60.738 60.000 11.31 0.00 0.00 2.73
4445 5032 5.658634 ACAGGCTCAAACTATCTCATGTAGA 59.341 40.000 0.00 0.00 39.02 2.59
4495 5082 1.729838 GCGACGACGAGCCCATATC 60.730 63.158 12.29 0.00 42.66 1.63
4552 5139 4.507756 TCAGAATTTTGAGATATCGCCACG 59.492 41.667 3.86 0.00 0.00 4.94
4568 5155 1.608025 CCACGCAGCAGTTAGAAAGGA 60.608 52.381 0.00 0.00 0.00 3.36
4569 5156 2.143122 CACGCAGCAGTTAGAAAGGAA 58.857 47.619 0.00 0.00 0.00 3.36
4570 5157 2.548057 CACGCAGCAGTTAGAAAGGAAA 59.452 45.455 0.00 0.00 0.00 3.13
4667 5255 6.549952 CAAAATGCTCTTAGAATCAGACACC 58.450 40.000 0.00 0.00 0.00 4.16
4669 5257 3.089284 TGCTCTTAGAATCAGACACCGA 58.911 45.455 0.00 0.00 0.00 4.69
4673 5261 4.998788 TCTTAGAATCAGACACCGACATG 58.001 43.478 0.00 0.00 0.00 3.21
4681 5269 2.227968 GACACCGACATGTCTTGCGC 62.228 60.000 22.95 0.00 44.71 6.09
4759 5347 5.746990 AACTAACTAGCTGATGTTCCTGT 57.253 39.130 0.00 0.00 0.00 4.00
4760 5348 5.331876 ACTAACTAGCTGATGTTCCTGTC 57.668 43.478 0.00 0.00 0.00 3.51
4761 5349 5.020132 ACTAACTAGCTGATGTTCCTGTCT 58.980 41.667 0.00 0.00 0.00 3.41
4762 5350 3.883830 ACTAGCTGATGTTCCTGTCTG 57.116 47.619 0.00 0.00 0.00 3.51
4803 5393 6.771076 TGTCATCACACGCTTAACATTATTC 58.229 36.000 0.00 0.00 0.00 1.75
4812 5402 6.195244 CACGCTTAACATTATTCTTGCATGAC 59.805 38.462 1.02 0.00 0.00 3.06
4819 5409 7.400599 ACATTATTCTTGCATGACTTGATGT 57.599 32.000 1.02 8.55 0.00 3.06
4820 5410 7.255569 ACATTATTCTTGCATGACTTGATGTG 58.744 34.615 15.34 8.33 0.00 3.21
4838 5434 5.297527 TGATGTGTGATGGATGCTGTAATTC 59.702 40.000 0.00 0.00 0.00 2.17
4863 5459 2.362077 AGTGCAAGGTTTGTCACATTCC 59.638 45.455 14.22 0.00 38.93 3.01
4900 5496 3.254166 CAGTTCACTGTCATCAAAAGGGG 59.746 47.826 0.00 0.00 39.09 4.79
4906 5502 1.004745 TGTCATCAAAAGGGGCCTCTC 59.995 52.381 5.00 0.00 0.00 3.20
4959 5558 5.584649 TCATCAAAGCTCCAGTAATTTACCG 59.415 40.000 2.92 0.00 0.00 4.02
4960 5559 3.687698 TCAAAGCTCCAGTAATTTACCGC 59.312 43.478 2.92 2.21 0.00 5.68
4961 5560 2.327200 AGCTCCAGTAATTTACCGCC 57.673 50.000 2.92 0.00 0.00 6.13
4962 5561 1.838077 AGCTCCAGTAATTTACCGCCT 59.162 47.619 2.92 0.00 0.00 5.52
4963 5562 2.238898 AGCTCCAGTAATTTACCGCCTT 59.761 45.455 2.92 0.00 0.00 4.35
4964 5563 2.354821 GCTCCAGTAATTTACCGCCTTG 59.645 50.000 2.92 0.00 0.00 3.61
4965 5564 3.606687 CTCCAGTAATTTACCGCCTTGT 58.393 45.455 2.92 0.00 0.00 3.16
4966 5565 4.007659 CTCCAGTAATTTACCGCCTTGTT 58.992 43.478 2.92 0.00 0.00 2.83
4967 5566 4.004982 TCCAGTAATTTACCGCCTTGTTC 58.995 43.478 2.92 0.00 0.00 3.18
4968 5567 3.754323 CCAGTAATTTACCGCCTTGTTCA 59.246 43.478 2.92 0.00 0.00 3.18
4969 5568 4.379082 CCAGTAATTTACCGCCTTGTTCAC 60.379 45.833 2.92 0.00 0.00 3.18
4970 5569 3.754850 AGTAATTTACCGCCTTGTTCACC 59.245 43.478 2.92 0.00 0.00 4.02
4971 5570 2.579410 ATTTACCGCCTTGTTCACCT 57.421 45.000 0.00 0.00 0.00 4.00
4972 5571 1.886886 TTTACCGCCTTGTTCACCTC 58.113 50.000 0.00 0.00 0.00 3.85
4973 5572 0.759959 TTACCGCCTTGTTCACCTCA 59.240 50.000 0.00 0.00 0.00 3.86
4974 5573 0.759959 TACCGCCTTGTTCACCTCAA 59.240 50.000 0.00 0.00 0.00 3.02
4975 5574 0.106918 ACCGCCTTGTTCACCTCAAA 60.107 50.000 0.00 0.00 0.00 2.69
4976 5575 1.028905 CCGCCTTGTTCACCTCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
4977 5576 1.001378 CCGCCTTGTTCACCTCAAAAG 60.001 52.381 0.00 0.00 0.00 2.27
4978 5577 1.946768 CGCCTTGTTCACCTCAAAAGA 59.053 47.619 0.00 0.00 0.00 2.52
4979 5578 2.357637 CGCCTTGTTCACCTCAAAAGAA 59.642 45.455 0.00 0.00 0.00 2.52
4980 5579 3.181491 CGCCTTGTTCACCTCAAAAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
4981 5580 4.676723 CGCCTTGTTCACCTCAAAAGAAAA 60.677 41.667 0.00 0.00 0.00 2.29
4982 5581 5.175127 GCCTTGTTCACCTCAAAAGAAAAA 58.825 37.500 0.00 0.00 0.00 1.94
5004 5603 5.669164 AAAAACACCACCTTGTATGTTGT 57.331 34.783 0.00 0.00 35.51 3.32
5005 5604 4.911514 AAACACCACCTTGTATGTTGTC 57.088 40.909 0.00 0.00 35.51 3.18
5006 5605 3.569194 ACACCACCTTGTATGTTGTCA 57.431 42.857 0.00 0.00 0.00 3.58
5007 5606 4.098914 ACACCACCTTGTATGTTGTCAT 57.901 40.909 0.00 0.00 38.00 3.06
5008 5607 5.235850 ACACCACCTTGTATGTTGTCATA 57.764 39.130 0.00 0.00 35.70 2.15
5060 5659 9.850628 ACATCATGTGTATTGATTTTCTTCTTG 57.149 29.630 0.00 0.00 39.91 3.02
5061 5660 9.850628 CATCATGTGTATTGATTTTCTTCTTGT 57.149 29.630 0.00 0.00 31.50 3.16
5079 5678 9.924650 TCTTCTTGTAAATAGTTACTTCCTGAC 57.075 33.333 13.68 0.00 40.35 3.51
5080 5679 9.706691 CTTCTTGTAAATAGTTACTTCCTGACA 57.293 33.333 13.68 0.00 40.35 3.58
5082 5681 9.653287 TCTTGTAAATAGTTACTTCCTGACATG 57.347 33.333 13.68 0.00 40.35 3.21
5083 5682 9.436957 CTTGTAAATAGTTACTTCCTGACATGT 57.563 33.333 13.68 0.00 40.35 3.21
5084 5683 8.771920 TGTAAATAGTTACTTCCTGACATGTG 57.228 34.615 13.68 0.00 40.35 3.21
5085 5684 8.590204 TGTAAATAGTTACTTCCTGACATGTGA 58.410 33.333 13.68 0.00 40.35 3.58
5086 5685 9.601217 GTAAATAGTTACTTCCTGACATGTGAT 57.399 33.333 1.15 0.00 37.27 3.06
5088 5687 9.601217 AAATAGTTACTTCCTGACATGTGATAC 57.399 33.333 1.15 0.00 0.00 2.24
5089 5688 6.605471 AGTTACTTCCTGACATGTGATACA 57.395 37.500 1.15 0.00 0.00 2.29
5090 5689 7.004555 AGTTACTTCCTGACATGTGATACAA 57.995 36.000 1.15 0.00 0.00 2.41
5091 5690 7.099764 AGTTACTTCCTGACATGTGATACAAG 58.900 38.462 1.15 0.00 0.00 3.16
5092 5691 5.745312 ACTTCCTGACATGTGATACAAGA 57.255 39.130 1.15 0.00 0.00 3.02
5093 5692 6.114187 ACTTCCTGACATGTGATACAAGAA 57.886 37.500 1.15 0.00 0.00 2.52
5094 5693 6.533730 ACTTCCTGACATGTGATACAAGAAA 58.466 36.000 1.15 0.00 0.00 2.52
5095 5694 6.652481 ACTTCCTGACATGTGATACAAGAAAG 59.348 38.462 1.15 1.89 0.00 2.62
5096 5695 4.937620 TCCTGACATGTGATACAAGAAAGC 59.062 41.667 1.15 0.00 0.00 3.51
5097 5696 4.940046 CCTGACATGTGATACAAGAAAGCT 59.060 41.667 1.15 0.00 0.00 3.74
5098 5697 6.070824 TCCTGACATGTGATACAAGAAAGCTA 60.071 38.462 1.15 0.00 0.00 3.32
5099 5698 6.595326 CCTGACATGTGATACAAGAAAGCTAA 59.405 38.462 1.15 0.00 0.00 3.09
5100 5699 7.119699 CCTGACATGTGATACAAGAAAGCTAAA 59.880 37.037 1.15 0.00 0.00 1.85
5101 5700 8.565896 TGACATGTGATACAAGAAAGCTAAAT 57.434 30.769 1.15 0.00 0.00 1.40
5102 5701 9.013229 TGACATGTGATACAAGAAAGCTAAATT 57.987 29.630 1.15 0.00 0.00 1.82
5103 5702 9.495754 GACATGTGATACAAGAAAGCTAAATTC 57.504 33.333 1.15 0.00 0.00 2.17
5104 5703 9.236006 ACATGTGATACAAGAAAGCTAAATTCT 57.764 29.630 0.00 0.00 38.75 2.40
5105 5704 9.499585 CATGTGATACAAGAAAGCTAAATTCTG 57.500 33.333 0.00 0.00 37.22 3.02
5106 5705 8.621532 TGTGATACAAGAAAGCTAAATTCTGT 57.378 30.769 0.00 4.19 37.22 3.41
5107 5706 9.719355 TGTGATACAAGAAAGCTAAATTCTGTA 57.281 29.630 0.00 5.90 37.22 2.74
5108 5707 9.974750 GTGATACAAGAAAGCTAAATTCTGTAC 57.025 33.333 0.00 0.00 37.22 2.90
5109 5708 9.162764 TGATACAAGAAAGCTAAATTCTGTACC 57.837 33.333 0.00 0.00 37.22 3.34
5110 5709 6.819397 ACAAGAAAGCTAAATTCTGTACCC 57.181 37.500 0.00 0.00 37.22 3.69
5111 5710 5.411669 ACAAGAAAGCTAAATTCTGTACCCG 59.588 40.000 0.00 0.00 37.22 5.28
5112 5711 3.939592 AGAAAGCTAAATTCTGTACCCGC 59.060 43.478 0.00 0.00 35.85 6.13
5113 5712 3.343941 AAGCTAAATTCTGTACCCGCA 57.656 42.857 0.00 0.00 0.00 5.69
5114 5713 3.343941 AGCTAAATTCTGTACCCGCAA 57.656 42.857 0.00 0.00 0.00 4.85
5115 5714 3.681593 AGCTAAATTCTGTACCCGCAAA 58.318 40.909 0.00 0.00 0.00 3.68
5116 5715 4.076394 AGCTAAATTCTGTACCCGCAAAA 58.924 39.130 0.00 0.00 0.00 2.44
5117 5716 4.521256 AGCTAAATTCTGTACCCGCAAAAA 59.479 37.500 0.00 0.00 0.00 1.94
5146 5745 8.465273 AAGCTAAATTCTACACAGAAAAAGGT 57.535 30.769 0.00 0.00 43.89 3.50
5147 5746 8.465273 AGCTAAATTCTACACAGAAAAAGGTT 57.535 30.769 0.00 0.00 43.89 3.50
5148 5747 8.914011 AGCTAAATTCTACACAGAAAAAGGTTT 58.086 29.630 0.00 0.00 43.89 3.27
5157 5756 9.406828 CTACACAGAAAAAGGTTTATTTTAGGC 57.593 33.333 0.00 0.00 32.20 3.93
5158 5757 7.214381 ACACAGAAAAAGGTTTATTTTAGGCC 58.786 34.615 0.00 0.00 32.20 5.19
5159 5758 7.147637 ACACAGAAAAAGGTTTATTTTAGGCCA 60.148 33.333 5.01 0.00 32.20 5.36
5160 5759 7.713073 CACAGAAAAAGGTTTATTTTAGGCCAA 59.287 33.333 5.01 0.00 32.20 4.52
5161 5760 8.268605 ACAGAAAAAGGTTTATTTTAGGCCAAA 58.731 29.630 5.01 0.00 32.20 3.28
5162 5761 9.114952 CAGAAAAAGGTTTATTTTAGGCCAAAA 57.885 29.630 5.01 10.47 40.34 2.44
5163 5762 9.688091 AGAAAAAGGTTTATTTTAGGCCAAAAA 57.312 25.926 5.01 1.64 39.51 1.94
5185 5784 5.607939 AAAGGGTAAAACAAGTTTGAGGG 57.392 39.130 0.00 0.00 32.36 4.30
5186 5785 4.529716 AGGGTAAAACAAGTTTGAGGGA 57.470 40.909 0.00 0.00 32.36 4.20
5187 5786 4.874199 AGGGTAAAACAAGTTTGAGGGAA 58.126 39.130 0.00 0.00 32.36 3.97
5188 5787 5.274015 AGGGTAAAACAAGTTTGAGGGAAA 58.726 37.500 0.00 0.00 32.36 3.13
5189 5788 5.722441 AGGGTAAAACAAGTTTGAGGGAAAA 59.278 36.000 0.00 0.00 32.36 2.29
5190 5789 6.213802 AGGGTAAAACAAGTTTGAGGGAAAAA 59.786 34.615 0.00 0.00 32.36 1.94
5227 5826 4.746309 GCCACAGGCCTGCATGGA 62.746 66.667 35.37 0.00 44.06 3.41
5228 5827 2.036098 CCACAGGCCTGCATGGAA 59.964 61.111 30.17 0.00 38.35 3.53
5229 5828 2.345760 CCACAGGCCTGCATGGAAC 61.346 63.158 30.17 0.00 38.35 3.62
5230 5829 2.360350 ACAGGCCTGCATGGAACG 60.360 61.111 33.06 5.98 38.35 3.95
5231 5830 3.818787 CAGGCCTGCATGGAACGC 61.819 66.667 22.33 0.00 38.35 4.84
5234 5833 3.204827 GCCTGCATGGAACGCGAT 61.205 61.111 15.93 0.00 38.35 4.58
5235 5834 2.711311 CCTGCATGGAACGCGATG 59.289 61.111 15.93 7.21 38.35 3.84
5240 5839 3.628005 CATGGAACGCGATGCAATT 57.372 47.368 15.40 0.00 0.00 2.32
5241 5840 1.469917 CATGGAACGCGATGCAATTC 58.530 50.000 15.40 5.48 0.00 2.17
5242 5841 0.381801 ATGGAACGCGATGCAATTCC 59.618 50.000 15.40 15.15 41.21 3.01
5243 5842 1.064134 GGAACGCGATGCAATTCCC 59.936 57.895 15.93 0.00 37.44 3.97
5244 5843 1.297598 GAACGCGATGCAATTCCCG 60.298 57.895 15.93 0.00 0.00 5.14
5245 5844 3.395470 AACGCGATGCAATTCCCGC 62.395 57.895 15.93 0.19 43.68 6.13
5246 5845 4.612536 CGCGATGCAATTCCCGCC 62.613 66.667 0.00 0.50 44.18 6.13
5247 5846 3.517140 GCGATGCAATTCCCGCCA 61.517 61.111 0.00 0.00 41.59 5.69
5248 5847 2.408835 CGATGCAATTCCCGCCAC 59.591 61.111 0.00 0.00 0.00 5.01
5249 5848 2.408835 GATGCAATTCCCGCCACG 59.591 61.111 0.00 0.00 0.00 4.94
5250 5849 3.756413 GATGCAATTCCCGCCACGC 62.756 63.158 0.00 0.00 0.00 5.34
5252 5851 4.049640 GCAATTCCCGCCACGCAA 62.050 61.111 0.00 0.00 0.00 4.85
5253 5852 2.126502 CAATTCCCGCCACGCAAC 60.127 61.111 0.00 0.00 0.00 4.17
5254 5853 2.596046 AATTCCCGCCACGCAACA 60.596 55.556 0.00 0.00 0.00 3.33
5255 5854 2.914908 AATTCCCGCCACGCAACAC 61.915 57.895 0.00 0.00 0.00 3.32
5256 5855 4.858680 TTCCCGCCACGCAACACA 62.859 61.111 0.00 0.00 0.00 3.72
5259 5858 4.605967 CCGCCACGCAACACACAC 62.606 66.667 0.00 0.00 0.00 3.82
5260 5859 3.870422 CGCCACGCAACACACACA 61.870 61.111 0.00 0.00 0.00 3.72
5261 5860 2.277884 GCCACGCAACACACACAC 60.278 61.111 0.00 0.00 0.00 3.82
5262 5861 3.045277 GCCACGCAACACACACACA 62.045 57.895 0.00 0.00 0.00 3.72
5263 5862 1.226267 CCACGCAACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
5264 5863 1.499502 CACGCAACACACACACACA 59.500 52.632 0.00 0.00 0.00 3.72
5265 5864 0.792729 CACGCAACACACACACACAC 60.793 55.000 0.00 0.00 0.00 3.82
5266 5865 1.231296 ACGCAACACACACACACACA 61.231 50.000 0.00 0.00 0.00 3.72
5267 5866 0.792729 CGCAACACACACACACACAC 60.793 55.000 0.00 0.00 0.00 3.82
5268 5867 0.239613 GCAACACACACACACACACA 59.760 50.000 0.00 0.00 0.00 3.72
5269 5868 1.728825 GCAACACACACACACACACAG 60.729 52.381 0.00 0.00 0.00 3.66
5270 5869 1.135717 CAACACACACACACACACAGG 60.136 52.381 0.00 0.00 0.00 4.00
5271 5870 0.323302 ACACACACACACACACAGGA 59.677 50.000 0.00 0.00 0.00 3.86
5272 5871 1.065491 ACACACACACACACACAGGAT 60.065 47.619 0.00 0.00 0.00 3.24
5273 5872 2.016318 CACACACACACACACAGGATT 58.984 47.619 0.00 0.00 0.00 3.01
5274 5873 2.032054 CACACACACACACACAGGATTC 59.968 50.000 0.00 0.00 0.00 2.52
5275 5874 1.603802 CACACACACACACAGGATTCC 59.396 52.381 0.00 0.00 0.00 3.01
5276 5875 0.867746 CACACACACACAGGATTCCG 59.132 55.000 0.00 0.00 0.00 4.30
5277 5876 0.756294 ACACACACACAGGATTCCGA 59.244 50.000 0.00 0.00 0.00 4.55
5278 5877 1.148310 CACACACACAGGATTCCGAC 58.852 55.000 0.00 0.00 0.00 4.79
5279 5878 0.319555 ACACACACAGGATTCCGACG 60.320 55.000 0.00 0.00 0.00 5.12
5280 5879 1.014044 CACACACAGGATTCCGACGG 61.014 60.000 7.84 7.84 0.00 4.79
5281 5880 2.100631 CACACAGGATTCCGACGGC 61.101 63.158 9.66 0.00 0.00 5.68
5282 5881 2.511600 CACAGGATTCCGACGGCC 60.512 66.667 9.66 4.79 0.00 6.13
5283 5882 3.782443 ACAGGATTCCGACGGCCC 61.782 66.667 9.66 10.22 0.00 5.80
5284 5883 4.891727 CAGGATTCCGACGGCCCG 62.892 72.222 9.66 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.384669 GGAACGGAGGGAGTACATCG 59.615 60.000 0.00 0.00 0.00 3.84
1 2 1.409427 CTGGAACGGAGGGAGTACATC 59.591 57.143 0.00 0.00 36.31 3.06
2 3 1.486211 CTGGAACGGAGGGAGTACAT 58.514 55.000 0.00 0.00 36.31 2.29
3 4 1.255667 GCTGGAACGGAGGGAGTACA 61.256 60.000 0.00 0.00 36.31 2.90
4 5 1.516423 GCTGGAACGGAGGGAGTAC 59.484 63.158 0.00 0.00 36.31 2.73
5 6 2.050350 CGCTGGAACGGAGGGAGTA 61.050 63.158 0.00 0.00 36.31 2.59
6 7 3.382832 CGCTGGAACGGAGGGAGT 61.383 66.667 0.00 0.00 36.31 3.85
7 8 2.427245 ATCGCTGGAACGGAGGGAG 61.427 63.158 0.00 0.00 36.01 4.30
8 9 2.363795 ATCGCTGGAACGGAGGGA 60.364 61.111 0.00 0.00 36.31 4.20
9 10 1.672854 TACATCGCTGGAACGGAGGG 61.673 60.000 0.00 0.00 36.31 4.30
10 11 0.527817 GTACATCGCTGGAACGGAGG 60.528 60.000 0.00 0.00 36.31 4.30
11 12 0.456221 AGTACATCGCTGGAACGGAG 59.544 55.000 0.00 0.00 36.31 4.63
12 13 0.454600 GAGTACATCGCTGGAACGGA 59.545 55.000 0.00 0.00 36.31 4.69
13 14 0.527817 GGAGTACATCGCTGGAACGG 60.528 60.000 0.00 0.00 38.10 4.44
14 15 0.527817 GGGAGTACATCGCTGGAACG 60.528 60.000 0.00 0.00 37.86 3.95
15 16 0.527817 CGGGAGTACATCGCTGGAAC 60.528 60.000 0.00 0.00 38.70 3.62
16 17 1.813859 CGGGAGTACATCGCTGGAA 59.186 57.895 0.00 0.00 38.70 3.53
17 18 2.782222 GCGGGAGTACATCGCTGGA 61.782 63.158 16.42 0.00 45.16 3.86
18 19 2.279517 GCGGGAGTACATCGCTGG 60.280 66.667 16.42 1.97 45.16 4.85
22 23 1.286260 GCTAGGCGGGAGTACATCG 59.714 63.158 0.00 0.00 0.00 3.84
23 24 0.032267 GTGCTAGGCGGGAGTACATC 59.968 60.000 0.00 0.00 30.66 3.06
24 25 0.397254 AGTGCTAGGCGGGAGTACAT 60.397 55.000 0.00 0.00 32.50 2.29
25 26 1.000019 AGTGCTAGGCGGGAGTACA 60.000 57.895 0.00 0.00 32.50 2.90
26 27 1.734748 GAGTGCTAGGCGGGAGTAC 59.265 63.158 0.00 0.00 0.00 2.73
27 28 1.822613 CGAGTGCTAGGCGGGAGTA 60.823 63.158 0.00 0.00 0.00 2.59
28 29 3.141488 CGAGTGCTAGGCGGGAGT 61.141 66.667 0.00 0.00 0.00 3.85
29 30 3.127352 GACGAGTGCTAGGCGGGAG 62.127 68.421 0.00 0.00 0.00 4.30
30 31 3.138798 GACGAGTGCTAGGCGGGA 61.139 66.667 0.00 0.00 0.00 5.14
31 32 2.298158 AATGACGAGTGCTAGGCGGG 62.298 60.000 0.00 0.00 0.00 6.13
32 33 1.141881 AATGACGAGTGCTAGGCGG 59.858 57.895 0.00 0.00 0.00 6.13
33 34 1.148157 CCAATGACGAGTGCTAGGCG 61.148 60.000 0.00 0.00 0.00 5.52
34 35 0.175760 TCCAATGACGAGTGCTAGGC 59.824 55.000 0.00 0.00 0.00 3.93
35 36 2.477825 CATCCAATGACGAGTGCTAGG 58.522 52.381 0.00 0.00 0.00 3.02
36 37 2.477825 CCATCCAATGACGAGTGCTAG 58.522 52.381 0.00 0.00 0.00 3.42
37 38 1.473257 GCCATCCAATGACGAGTGCTA 60.473 52.381 0.00 0.00 0.00 3.49
38 39 0.745845 GCCATCCAATGACGAGTGCT 60.746 55.000 0.00 0.00 0.00 4.40
39 40 1.723870 GCCATCCAATGACGAGTGC 59.276 57.895 0.00 0.00 0.00 4.40
40 41 0.740868 ACGCCATCCAATGACGAGTG 60.741 55.000 2.67 0.00 38.47 3.51
41 42 0.740868 CACGCCATCCAATGACGAGT 60.741 55.000 2.67 0.00 38.47 4.18
42 43 0.740868 ACACGCCATCCAATGACGAG 60.741 55.000 2.67 0.00 38.47 4.18
43 44 1.018752 CACACGCCATCCAATGACGA 61.019 55.000 2.67 0.00 38.47 4.20
44 45 1.425031 CACACGCCATCCAATGACG 59.575 57.895 0.00 0.00 42.05 4.35
54 55 2.110213 GACAACCTCCACACGCCA 59.890 61.111 0.00 0.00 0.00 5.69
56 57 3.952811 GAGACAACCTCCACACGC 58.047 61.111 0.00 0.00 35.87 5.34
79 80 2.838736 CCAATCGAATCCCGTGAGATT 58.161 47.619 0.00 0.00 39.19 2.40
86 87 0.810031 AAGACGCCAATCGAATCCCG 60.810 55.000 0.00 0.00 41.67 5.14
89 90 1.651987 TCCAAGACGCCAATCGAATC 58.348 50.000 0.00 0.00 41.67 2.52
93 94 0.179073 AGGATCCAAGACGCCAATCG 60.179 55.000 15.82 0.00 45.38 3.34
94 95 1.303309 CAGGATCCAAGACGCCAATC 58.697 55.000 15.82 0.00 0.00 2.67
100 101 1.128692 GCGAAAACAGGATCCAAGACG 59.871 52.381 15.82 12.30 0.00 4.18
110 111 1.165907 TGCAGACCAGCGAAAACAGG 61.166 55.000 0.00 0.00 37.31 4.00
111 112 0.877071 ATGCAGACCAGCGAAAACAG 59.123 50.000 0.00 0.00 37.31 3.16
115 116 0.602638 ACGAATGCAGACCAGCGAAA 60.603 50.000 0.00 0.00 37.31 3.46
118 119 2.029288 ACACGAATGCAGACCAGCG 61.029 57.895 0.00 0.00 37.31 5.18
120 121 0.792640 GACACACGAATGCAGACCAG 59.207 55.000 0.00 0.00 0.00 4.00
132 133 6.792250 GTGAAAAATGTAGATGAAGACACACG 59.208 38.462 0.00 0.00 0.00 4.49
141 142 4.994217 TGCTCACGTGAAAAATGTAGATGA 59.006 37.500 20.49 0.00 0.00 2.92
149 150 4.305989 ACACAATGCTCACGTGAAAAAT 57.694 36.364 20.49 10.30 34.69 1.82
155 156 2.753989 TTGAACACAATGCTCACGTG 57.246 45.000 9.94 9.94 36.70 4.49
156 157 2.223479 GGTTTGAACACAATGCTCACGT 60.223 45.455 0.00 0.00 0.00 4.49
157 158 2.223456 TGGTTTGAACACAATGCTCACG 60.223 45.455 0.00 0.00 0.00 4.35
214 215 7.447374 TGACACTAGGATATTGTTTGTTTGG 57.553 36.000 0.00 0.00 34.37 3.28
215 216 9.559958 GAATGACACTAGGATATTGTTTGTTTG 57.440 33.333 0.00 0.00 34.37 2.93
243 246 7.555554 ACTTTCCTTCTTTGTATGATCCTGATG 59.444 37.037 0.00 0.00 0.00 3.07
256 261 6.039717 TCCTCATTGTCAACTTTCCTTCTTTG 59.960 38.462 0.00 0.00 0.00 2.77
265 270 7.417116 GGCAATCATATCCTCATTGTCAACTTT 60.417 37.037 0.00 0.00 33.22 2.66
279 284 1.145738 ACCAGGGTGGCAATCATATCC 59.854 52.381 0.00 0.00 42.67 2.59
300 305 6.127647 GGGAGCAACATGTTTGAATCAAGATA 60.128 38.462 8.77 0.00 0.00 1.98
345 350 6.893759 TGTACGTGTATCCAACTTTCATTTG 58.106 36.000 0.00 0.00 0.00 2.32
347 352 6.932400 TCTTGTACGTGTATCCAACTTTCATT 59.068 34.615 0.00 0.00 0.00 2.57
349 354 5.845103 TCTTGTACGTGTATCCAACTTTCA 58.155 37.500 0.00 0.00 0.00 2.69
423 433 5.287992 CGTTCCTTGTTACGATCTCCTTTAC 59.712 44.000 0.00 0.00 40.03 2.01
427 437 2.165845 CCGTTCCTTGTTACGATCTCCT 59.834 50.000 0.00 0.00 40.03 3.69
428 438 2.165030 TCCGTTCCTTGTTACGATCTCC 59.835 50.000 0.00 0.00 40.03 3.71
434 447 2.985139 GTCTCTTCCGTTCCTTGTTACG 59.015 50.000 0.00 0.00 37.50 3.18
442 455 0.903454 TCCCCTGTCTCTTCCGTTCC 60.903 60.000 0.00 0.00 0.00 3.62
446 459 2.060980 CCCTCCCCTGTCTCTTCCG 61.061 68.421 0.00 0.00 0.00 4.30
475 488 1.650314 GCCAAATAACCACCGGACCG 61.650 60.000 9.46 6.99 0.00 4.79
603 632 0.327000 AGGAGAGGAGGAATGGTGGG 60.327 60.000 0.00 0.00 0.00 4.61
621 650 2.770048 ATTGGAGGGGCCGGAGAG 60.770 66.667 5.05 0.00 40.66 3.20
622 651 2.768344 GATTGGAGGGGCCGGAGA 60.768 66.667 5.05 0.00 40.66 3.71
718 747 2.000825 GAATTGGAGGGAGGGAGGCC 62.001 65.000 0.00 0.00 0.00 5.19
719 748 1.534203 GAATTGGAGGGAGGGAGGC 59.466 63.158 0.00 0.00 0.00 4.70
720 749 1.700042 CGGAATTGGAGGGAGGGAGG 61.700 65.000 0.00 0.00 0.00 4.30
721 750 1.832912 CGGAATTGGAGGGAGGGAG 59.167 63.158 0.00 0.00 0.00 4.30
722 751 2.375345 GCGGAATTGGAGGGAGGGA 61.375 63.158 0.00 0.00 0.00 4.20
723 752 2.193248 GCGGAATTGGAGGGAGGG 59.807 66.667 0.00 0.00 0.00 4.30
762 791 2.048222 CGGACGGCAAGAAGAGCA 60.048 61.111 0.00 0.00 0.00 4.26
809 842 0.750850 GGGAATCGGTGAATCTCGGA 59.249 55.000 0.00 0.00 0.00 4.55
833 866 4.744795 AGCTGATAGACAAAGACGGAAT 57.255 40.909 0.00 0.00 0.00 3.01
846 882 2.077687 AAATGGCCCCAAGCTGATAG 57.922 50.000 0.00 0.00 43.05 2.08
860 896 2.024414 GGGAGGACGATTCCAAAATGG 58.976 52.381 0.00 0.00 45.72 3.16
972 1008 2.892425 CATCAACTCCCTCCGCGC 60.892 66.667 0.00 0.00 0.00 6.86
1365 1404 1.586422 GCATCGGCATCATGTAGTGT 58.414 50.000 0.00 0.00 40.72 3.55
1396 1441 2.610232 GCCAAACAAGGAAACATCGCAT 60.610 45.455 0.00 0.00 0.00 4.73
1493 1539 4.265073 GTGACTACAGCAATCATTTCCCT 58.735 43.478 0.00 0.00 0.00 4.20
1601 1655 0.741915 AGTTCGCCTAGCTAGCTGAC 59.258 55.000 27.68 14.59 0.00 3.51
1615 1669 3.181497 CCCAGGCACAATAATTCAGTTCG 60.181 47.826 0.00 0.00 0.00 3.95
1721 1775 5.295152 AGGTCAGGTAAACGACAAACTAAG 58.705 41.667 0.00 0.00 33.66 2.18
1843 1897 6.542370 GGATTAGTTGCCTAAGACTTTATGCA 59.458 38.462 0.00 0.00 38.23 3.96
1912 1966 9.070179 CCTTGATACATCAATAATGACCAATCA 57.930 33.333 5.16 0.00 44.92 2.57
2078 2132 3.722147 CATGCCTGTAAGAAGAGCGTAT 58.278 45.455 0.00 0.00 34.07 3.06
2099 2153 6.581166 CACATATGACAGCACATATCATTTGC 59.419 38.462 10.38 0.00 40.20 3.68
2128 2182 6.878923 TCAACTGAGGAACATATACAAACCAG 59.121 38.462 0.00 0.00 0.00 4.00
2249 2303 7.595130 ACTCTCAGAAAATAAAATCGCCAAAAC 59.405 33.333 0.00 0.00 0.00 2.43
2580 2634 2.433239 GGCTTCTGAACGGGATAGGTTA 59.567 50.000 0.00 0.00 0.00 2.85
2656 2710 2.167281 GGTAGGGTAAAGGTCCGAAGAC 59.833 54.545 0.00 0.00 42.73 3.01
2685 2739 8.985805 TCAATTCTAGGTTTTTAACGAAGTCTC 58.014 33.333 0.00 0.00 45.00 3.36
2937 2993 1.374758 CAGTCCTGAACCGCCAGAC 60.375 63.158 0.00 0.00 36.29 3.51
2971 3027 4.080413 TGGACTGTCCTCAATTCATATGCA 60.080 41.667 26.03 0.00 37.46 3.96
2992 3048 1.341080 AACAGGGCATTTTCAGGTGG 58.659 50.000 0.00 0.00 0.00 4.61
3149 3209 7.847096 ACATAAACAAGGGTTTCCAAATATCC 58.153 34.615 0.00 0.00 43.60 2.59
3156 3216 5.894393 TGAAGAACATAAACAAGGGTTTCCA 59.106 36.000 0.00 0.00 43.60 3.53
3257 3326 3.316308 AGAAGTCATGTGCCAACAAGTTC 59.684 43.478 0.00 0.00 40.46 3.01
3658 3729 9.705103 ATGGGCTATATTAATGCATTGTAATCT 57.295 29.630 22.27 9.60 0.00 2.40
3659 3730 9.740239 CATGGGCTATATTAATGCATTGTAATC 57.260 33.333 22.27 3.06 0.00 1.75
3662 3733 6.662663 TGCATGGGCTATATTAATGCATTGTA 59.337 34.615 22.27 14.31 46.32 2.41
3663 3734 5.481122 TGCATGGGCTATATTAATGCATTGT 59.519 36.000 22.27 12.60 46.32 2.71
3664 3735 5.968254 TGCATGGGCTATATTAATGCATTG 58.032 37.500 22.27 5.02 46.32 2.82
3668 3739 7.572523 TTAGATGCATGGGCTATATTAATGC 57.427 36.000 2.46 0.00 43.08 3.56
3669 3740 9.399797 TCTTTAGATGCATGGGCTATATTAATG 57.600 33.333 2.46 0.00 41.91 1.90
3670 3741 9.624373 CTCTTTAGATGCATGGGCTATATTAAT 57.376 33.333 2.46 0.00 41.91 1.40
3671 3742 8.049117 CCTCTTTAGATGCATGGGCTATATTAA 58.951 37.037 2.46 0.00 41.91 1.40
3672 3743 7.182749 ACCTCTTTAGATGCATGGGCTATATTA 59.817 37.037 2.46 0.00 41.91 0.98
3673 3744 6.012157 ACCTCTTTAGATGCATGGGCTATATT 60.012 38.462 2.46 0.00 41.91 1.28
3674 3745 5.490357 ACCTCTTTAGATGCATGGGCTATAT 59.510 40.000 2.46 0.00 41.91 0.86
3675 3746 4.846367 ACCTCTTTAGATGCATGGGCTATA 59.154 41.667 2.46 0.00 41.91 1.31
3676 3747 3.654806 ACCTCTTTAGATGCATGGGCTAT 59.345 43.478 2.46 0.00 41.91 2.97
3677 3748 3.048600 ACCTCTTTAGATGCATGGGCTA 58.951 45.455 2.46 0.00 41.91 3.93
3678 3749 1.849039 ACCTCTTTAGATGCATGGGCT 59.151 47.619 2.46 0.00 41.91 5.19
3679 3750 2.355010 ACCTCTTTAGATGCATGGGC 57.645 50.000 2.46 0.00 41.68 5.36
3693 3764 8.602472 ACTCAAGATTTCTAGATACAACCTCT 57.398 34.615 0.00 0.00 0.00 3.69
3714 3792 2.554344 GGCCCCATGAAACTGTAACTCA 60.554 50.000 0.00 0.00 0.00 3.41
3719 3797 1.072266 ACTGGCCCCATGAAACTGTA 58.928 50.000 0.00 0.00 0.00 2.74
3774 3856 4.826733 TCATATGCCAACAAGTTTCACTGT 59.173 37.500 0.00 0.00 0.00 3.55
3929 4481 6.952773 ACTACACACCTGCAATTTCTAAAA 57.047 33.333 0.00 0.00 0.00 1.52
3937 4489 9.243105 AGAAATTATTTACTACACACCTGCAAT 57.757 29.630 0.00 0.00 0.00 3.56
3962 4514 7.254727 GCCAGCAGAGAGAAATACTGATAAAAG 60.255 40.741 0.00 0.00 34.07 2.27
3966 4518 4.651045 TGCCAGCAGAGAGAAATACTGATA 59.349 41.667 0.00 0.00 34.07 2.15
3973 4525 2.920524 CTGATGCCAGCAGAGAGAAAT 58.079 47.619 3.29 0.00 35.39 2.17
4018 4570 4.746729 TCATTTTGAGCACATACCATTGC 58.253 39.130 0.00 0.00 39.16 3.56
4142 4707 2.827322 TGGGTGCATGGAATTTCTTGAG 59.173 45.455 3.81 0.00 0.00 3.02
4151 4716 0.697658 TCTGTGATGGGTGCATGGAA 59.302 50.000 0.00 0.00 0.00 3.53
4175 4743 2.430465 AGCAAATGTCAGCATCGACTT 58.570 42.857 0.00 0.00 36.82 3.01
4302 4888 2.203126 GGAGATTCAGCCCTGCGG 60.203 66.667 0.00 0.00 0.00 5.69
4445 5032 3.630013 TCGCAGCCCTGACTTGCT 61.630 61.111 0.00 0.00 38.67 3.91
4495 5082 1.265568 GCTTGCGCATTCAACAGATG 58.734 50.000 12.75 0.00 35.78 2.90
4577 5164 2.338984 GAGAACACCGCGTGTCCT 59.661 61.111 13.33 7.42 46.79 3.85
4582 5169 2.356313 CTGCTGAGAACACCGCGT 60.356 61.111 4.92 0.00 0.00 6.01
4588 5175 0.887836 CAAGGCTGCTGCTGAGAACA 60.888 55.000 15.64 0.00 39.59 3.18
4667 5255 4.505217 GCCGCGCAAGACATGTCG 62.505 66.667 19.85 10.12 43.02 4.35
4669 5257 3.425713 CAGCCGCGCAAGACATGT 61.426 61.111 8.75 0.00 43.02 3.21
4673 5261 2.690778 AATTCCAGCCGCGCAAGAC 61.691 57.895 8.75 0.00 43.02 3.01
4675 5263 2.202518 CAATTCCAGCCGCGCAAG 60.203 61.111 8.75 0.00 43.44 4.01
4681 5269 3.864686 CGGTCGCAATTCCAGCCG 61.865 66.667 0.00 0.00 0.00 5.52
4760 5348 6.346912 TGACAGCATCAGACTGACAGACAG 62.347 50.000 10.08 0.00 41.39 3.51
4761 5349 1.966354 ACAGCATCAGACTGACAGACA 59.034 47.619 10.08 0.00 38.55 3.41
4762 5350 2.029560 TGACAGCATCAGACTGACAGAC 60.030 50.000 10.08 2.59 35.44 3.51
4803 5393 4.412207 CATCACACATCAAGTCATGCAAG 58.588 43.478 0.00 0.00 0.00 4.01
4812 5402 3.014623 ACAGCATCCATCACACATCAAG 58.985 45.455 0.00 0.00 0.00 3.02
4819 5409 4.233632 TGGAATTACAGCATCCATCACA 57.766 40.909 0.00 0.00 38.30 3.58
4820 5410 5.126061 ACTTTGGAATTACAGCATCCATCAC 59.874 40.000 0.00 0.00 42.53 3.06
4838 5434 2.094286 TGTGACAAACCTTGCACTTTGG 60.094 45.455 12.85 4.68 38.02 3.28
4934 5533 6.238211 CGGTAAATTACTGGAGCTTTGATGAG 60.238 42.308 4.10 0.00 0.00 2.90
4935 5534 5.584649 CGGTAAATTACTGGAGCTTTGATGA 59.415 40.000 4.10 0.00 0.00 2.92
4936 5535 5.730568 GCGGTAAATTACTGGAGCTTTGATG 60.731 44.000 13.26 0.00 35.58 3.07
4937 5536 4.335594 GCGGTAAATTACTGGAGCTTTGAT 59.664 41.667 13.26 0.00 35.58 2.57
4938 5537 3.687698 GCGGTAAATTACTGGAGCTTTGA 59.312 43.478 13.26 0.00 35.58 2.69
4939 5538 3.181500 GGCGGTAAATTACTGGAGCTTTG 60.181 47.826 13.26 0.00 35.58 2.77
4941 5540 2.238898 AGGCGGTAAATTACTGGAGCTT 59.761 45.455 13.26 3.88 35.58 3.74
4942 5541 1.838077 AGGCGGTAAATTACTGGAGCT 59.162 47.619 13.26 0.00 35.58 4.09
4943 5542 2.327200 AGGCGGTAAATTACTGGAGC 57.673 50.000 13.26 8.83 35.58 4.70
4944 5543 3.606687 ACAAGGCGGTAAATTACTGGAG 58.393 45.455 13.26 0.40 35.58 3.86
4945 5544 3.706600 ACAAGGCGGTAAATTACTGGA 57.293 42.857 13.26 0.00 35.58 3.86
4946 5545 3.754323 TGAACAAGGCGGTAAATTACTGG 59.246 43.478 13.26 2.86 35.58 4.00
4959 5558 4.385358 TTTCTTTTGAGGTGAACAAGGC 57.615 40.909 0.00 0.00 0.00 4.35
4982 5581 5.186021 TGACAACATACAAGGTGGTGTTTTT 59.814 36.000 0.00 0.00 46.79 1.94
4983 5582 4.707448 TGACAACATACAAGGTGGTGTTTT 59.293 37.500 0.00 0.00 46.79 2.43
4984 5583 4.274147 TGACAACATACAAGGTGGTGTTT 58.726 39.130 0.00 0.00 46.79 2.83
4985 5584 3.892284 TGACAACATACAAGGTGGTGTT 58.108 40.909 0.00 0.00 46.79 3.32
5034 5633 9.850628 CAAGAAGAAAATCAATACACATGATGT 57.149 29.630 0.00 2.78 46.06 3.06
5035 5634 9.850628 ACAAGAAGAAAATCAATACACATGATG 57.149 29.630 0.00 0.00 37.58 3.07
5053 5652 9.924650 GTCAGGAAGTAACTATTTACAAGAAGA 57.075 33.333 5.85 0.00 40.25 2.87
5054 5653 9.706691 TGTCAGGAAGTAACTATTTACAAGAAG 57.293 33.333 5.85 0.00 40.25 2.85
5056 5655 9.653287 CATGTCAGGAAGTAACTATTTACAAGA 57.347 33.333 5.85 0.00 40.25 3.02
5057 5656 9.436957 ACATGTCAGGAAGTAACTATTTACAAG 57.563 33.333 5.85 0.00 40.25 3.16
5058 5657 9.214957 CACATGTCAGGAAGTAACTATTTACAA 57.785 33.333 0.00 0.00 40.25 2.41
5059 5658 8.590204 TCACATGTCAGGAAGTAACTATTTACA 58.410 33.333 0.00 0.00 40.25 2.41
5060 5659 8.997621 TCACATGTCAGGAAGTAACTATTTAC 57.002 34.615 0.00 0.00 38.34 2.01
5062 5661 9.601217 GTATCACATGTCAGGAAGTAACTATTT 57.399 33.333 0.00 0.00 0.00 1.40
5063 5662 8.758829 TGTATCACATGTCAGGAAGTAACTATT 58.241 33.333 0.00 0.00 0.00 1.73
5064 5663 8.306313 TGTATCACATGTCAGGAAGTAACTAT 57.694 34.615 0.00 0.00 0.00 2.12
5065 5664 7.712204 TGTATCACATGTCAGGAAGTAACTA 57.288 36.000 0.00 0.00 0.00 2.24
5066 5665 6.605471 TGTATCACATGTCAGGAAGTAACT 57.395 37.500 0.00 0.00 0.00 2.24
5067 5666 7.097192 TCTTGTATCACATGTCAGGAAGTAAC 58.903 38.462 0.00 0.00 0.00 2.50
5068 5667 7.239763 TCTTGTATCACATGTCAGGAAGTAA 57.760 36.000 0.00 0.00 0.00 2.24
5069 5668 6.850752 TCTTGTATCACATGTCAGGAAGTA 57.149 37.500 0.00 0.00 0.00 2.24
5070 5669 5.745312 TCTTGTATCACATGTCAGGAAGT 57.255 39.130 0.00 0.00 0.00 3.01
5071 5670 6.402983 GCTTTCTTGTATCACATGTCAGGAAG 60.403 42.308 0.00 0.00 30.27 3.46
5072 5671 5.412594 GCTTTCTTGTATCACATGTCAGGAA 59.587 40.000 0.00 0.23 0.00 3.36
5073 5672 4.937620 GCTTTCTTGTATCACATGTCAGGA 59.062 41.667 0.00 0.00 0.00 3.86
5074 5673 4.940046 AGCTTTCTTGTATCACATGTCAGG 59.060 41.667 0.00 0.00 0.00 3.86
5075 5674 7.601073 TTAGCTTTCTTGTATCACATGTCAG 57.399 36.000 0.00 0.00 0.00 3.51
5076 5675 7.977789 TTTAGCTTTCTTGTATCACATGTCA 57.022 32.000 0.00 0.00 0.00 3.58
5077 5676 9.495754 GAATTTAGCTTTCTTGTATCACATGTC 57.504 33.333 0.00 0.00 0.00 3.06
5078 5677 9.236006 AGAATTTAGCTTTCTTGTATCACATGT 57.764 29.630 0.00 0.00 29.12 3.21
5079 5678 9.499585 CAGAATTTAGCTTTCTTGTATCACATG 57.500 33.333 0.00 0.00 31.11 3.21
5080 5679 9.236006 ACAGAATTTAGCTTTCTTGTATCACAT 57.764 29.630 0.00 0.00 31.11 3.21
5081 5680 8.621532 ACAGAATTTAGCTTTCTTGTATCACA 57.378 30.769 0.00 0.00 31.11 3.58
5082 5681 9.974750 GTACAGAATTTAGCTTTCTTGTATCAC 57.025 33.333 0.00 0.00 31.11 3.06
5083 5682 9.162764 GGTACAGAATTTAGCTTTCTTGTATCA 57.837 33.333 0.00 0.00 31.11 2.15
5084 5683 8.613482 GGGTACAGAATTTAGCTTTCTTGTATC 58.387 37.037 0.00 1.89 31.11 2.24
5085 5684 7.280205 CGGGTACAGAATTTAGCTTTCTTGTAT 59.720 37.037 0.00 0.00 31.11 2.29
5086 5685 6.592607 CGGGTACAGAATTTAGCTTTCTTGTA 59.407 38.462 0.00 0.00 31.11 2.41
5087 5686 5.411669 CGGGTACAGAATTTAGCTTTCTTGT 59.588 40.000 0.00 0.00 31.11 3.16
5088 5687 5.673818 GCGGGTACAGAATTTAGCTTTCTTG 60.674 44.000 0.00 0.00 31.11 3.02
5089 5688 4.395231 GCGGGTACAGAATTTAGCTTTCTT 59.605 41.667 0.00 0.00 31.11 2.52
5090 5689 3.939592 GCGGGTACAGAATTTAGCTTTCT 59.060 43.478 0.00 0.00 33.75 2.52
5091 5690 3.687698 TGCGGGTACAGAATTTAGCTTTC 59.312 43.478 0.00 0.00 0.00 2.62
5092 5691 3.681593 TGCGGGTACAGAATTTAGCTTT 58.318 40.909 0.00 0.00 0.00 3.51
5093 5692 3.343941 TGCGGGTACAGAATTTAGCTT 57.656 42.857 0.00 0.00 0.00 3.74
5094 5693 3.343941 TTGCGGGTACAGAATTTAGCT 57.656 42.857 0.00 0.00 0.00 3.32
5095 5694 4.428615 TTTTGCGGGTACAGAATTTAGC 57.571 40.909 0.00 0.00 0.00 3.09
5120 5719 8.914011 ACCTTTTTCTGTGTAGAATTTAGCTTT 58.086 29.630 0.00 0.00 42.25 3.51
5121 5720 8.465273 ACCTTTTTCTGTGTAGAATTTAGCTT 57.535 30.769 0.00 0.00 42.25 3.74
5122 5721 8.465273 AACCTTTTTCTGTGTAGAATTTAGCT 57.535 30.769 0.00 0.00 42.25 3.32
5131 5730 9.406828 GCCTAAAATAAACCTTTTTCTGTGTAG 57.593 33.333 0.00 0.00 31.15 2.74
5132 5731 8.361889 GGCCTAAAATAAACCTTTTTCTGTGTA 58.638 33.333 0.00 0.00 31.15 2.90
5133 5732 7.147637 TGGCCTAAAATAAACCTTTTTCTGTGT 60.148 33.333 3.32 0.00 31.15 3.72
5134 5733 7.213678 TGGCCTAAAATAAACCTTTTTCTGTG 58.786 34.615 3.32 0.00 31.15 3.66
5135 5734 7.368198 TGGCCTAAAATAAACCTTTTTCTGT 57.632 32.000 3.32 0.00 31.15 3.41
5136 5735 8.669946 TTTGGCCTAAAATAAACCTTTTTCTG 57.330 30.769 3.32 0.00 31.15 3.02
5137 5736 9.688091 TTTTTGGCCTAAAATAAACCTTTTTCT 57.312 25.926 19.31 0.00 38.03 2.52
5161 5760 6.213802 TCCCTCAAACTTGTTTTACCCTTTTT 59.786 34.615 0.00 0.00 0.00 1.94
5162 5761 5.722441 TCCCTCAAACTTGTTTTACCCTTTT 59.278 36.000 0.00 0.00 0.00 2.27
5163 5762 5.274015 TCCCTCAAACTTGTTTTACCCTTT 58.726 37.500 0.00 0.00 0.00 3.11
5164 5763 4.874199 TCCCTCAAACTTGTTTTACCCTT 58.126 39.130 0.00 0.00 0.00 3.95
5165 5764 4.529716 TCCCTCAAACTTGTTTTACCCT 57.470 40.909 0.00 0.00 0.00 4.34
5166 5765 5.601583 TTTCCCTCAAACTTGTTTTACCC 57.398 39.130 0.00 0.00 0.00 3.69
5211 5810 2.036098 TTCCATGCAGGCCTGTGG 59.964 61.111 32.81 30.56 37.29 4.17
5212 5811 2.693762 CGTTCCATGCAGGCCTGTG 61.694 63.158 32.81 23.48 37.29 3.66
5213 5812 2.360350 CGTTCCATGCAGGCCTGT 60.360 61.111 32.81 12.71 37.29 4.00
5214 5813 3.818787 GCGTTCCATGCAGGCCTG 61.819 66.667 29.34 29.34 37.29 4.85
5217 5816 3.204827 ATCGCGTTCCATGCAGGC 61.205 61.111 5.77 0.00 37.29 4.85
5218 5817 2.711311 CATCGCGTTCCATGCAGG 59.289 61.111 5.77 0.00 39.47 4.85
5219 5818 2.023741 GCATCGCGTTCCATGCAG 59.976 61.111 21.43 0.00 44.18 4.41
5221 5820 0.526096 AATTGCATCGCGTTCCATGC 60.526 50.000 20.05 20.05 44.87 4.06
5222 5821 1.469917 GAATTGCATCGCGTTCCATG 58.530 50.000 5.77 3.19 0.00 3.66
5223 5822 0.381801 GGAATTGCATCGCGTTCCAT 59.618 50.000 16.45 0.00 41.93 3.41
5224 5823 1.653094 GGGAATTGCATCGCGTTCCA 61.653 55.000 21.09 1.41 43.15 3.53
5225 5824 1.064134 GGGAATTGCATCGCGTTCC 59.936 57.895 13.81 13.81 41.75 3.62
5226 5825 1.297598 CGGGAATTGCATCGCGTTC 60.298 57.895 16.14 0.45 46.75 3.95
5227 5826 2.791256 CGGGAATTGCATCGCGTT 59.209 55.556 16.14 0.00 46.75 4.84
5230 5829 3.517140 TGGCGGGAATTGCATCGC 61.517 61.111 11.16 11.16 46.35 4.58
5231 5830 2.408835 GTGGCGGGAATTGCATCG 59.591 61.111 0.00 0.00 0.00 3.84
5232 5831 2.408835 CGTGGCGGGAATTGCATC 59.591 61.111 0.00 0.00 0.00 3.91
5233 5832 3.825611 GCGTGGCGGGAATTGCAT 61.826 61.111 0.00 0.00 0.00 3.96
5235 5834 4.049640 TTGCGTGGCGGGAATTGC 62.050 61.111 0.00 0.00 0.00 3.56
5236 5835 2.126502 GTTGCGTGGCGGGAATTG 60.127 61.111 0.00 0.00 0.00 2.32
5237 5836 2.596046 TGTTGCGTGGCGGGAATT 60.596 55.556 0.00 0.00 0.00 2.17
5238 5837 3.361977 GTGTTGCGTGGCGGGAAT 61.362 61.111 0.00 0.00 0.00 3.01
5239 5838 4.858680 TGTGTTGCGTGGCGGGAA 62.859 61.111 0.00 0.00 0.00 3.97
5242 5841 4.605967 GTGTGTGTTGCGTGGCGG 62.606 66.667 0.00 0.00 0.00 6.13
5243 5842 3.870422 TGTGTGTGTTGCGTGGCG 61.870 61.111 0.00 0.00 0.00 5.69
5244 5843 2.277884 GTGTGTGTGTTGCGTGGC 60.278 61.111 0.00 0.00 0.00 5.01
5245 5844 1.226267 GTGTGTGTGTGTTGCGTGG 60.226 57.895 0.00 0.00 0.00 4.94
5246 5845 0.792729 GTGTGTGTGTGTGTTGCGTG 60.793 55.000 0.00 0.00 0.00 5.34
5247 5846 1.231296 TGTGTGTGTGTGTGTTGCGT 61.231 50.000 0.00 0.00 0.00 5.24
5248 5847 0.792729 GTGTGTGTGTGTGTGTTGCG 60.793 55.000 0.00 0.00 0.00 4.85
5249 5848 0.239613 TGTGTGTGTGTGTGTGTTGC 59.760 50.000 0.00 0.00 0.00 4.17
5250 5849 1.135717 CCTGTGTGTGTGTGTGTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
5251 5850 1.164411 CCTGTGTGTGTGTGTGTGTT 58.836 50.000 0.00 0.00 0.00 3.32
5252 5851 0.323302 TCCTGTGTGTGTGTGTGTGT 59.677 50.000 0.00 0.00 0.00 3.72
5253 5852 1.667236 ATCCTGTGTGTGTGTGTGTG 58.333 50.000 0.00 0.00 0.00 3.82
5254 5853 2.288666 GAATCCTGTGTGTGTGTGTGT 58.711 47.619 0.00 0.00 0.00 3.72
5255 5854 1.603802 GGAATCCTGTGTGTGTGTGTG 59.396 52.381 0.00 0.00 0.00 3.82
5256 5855 1.810031 CGGAATCCTGTGTGTGTGTGT 60.810 52.381 0.00 0.00 0.00 3.72
5257 5856 0.867746 CGGAATCCTGTGTGTGTGTG 59.132 55.000 0.00 0.00 0.00 3.82
5258 5857 0.756294 TCGGAATCCTGTGTGTGTGT 59.244 50.000 0.00 0.00 0.00 3.72
5259 5858 1.148310 GTCGGAATCCTGTGTGTGTG 58.852 55.000 0.00 0.00 0.00 3.82
5260 5859 0.319555 CGTCGGAATCCTGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
5261 5860 1.014044 CCGTCGGAATCCTGTGTGTG 61.014 60.000 4.91 0.00 0.00 3.82
5262 5861 1.292223 CCGTCGGAATCCTGTGTGT 59.708 57.895 4.91 0.00 0.00 3.72
5263 5862 2.100631 GCCGTCGGAATCCTGTGTG 61.101 63.158 17.49 0.00 0.00 3.82
5264 5863 2.264794 GCCGTCGGAATCCTGTGT 59.735 61.111 17.49 0.00 0.00 3.72
5265 5864 2.511600 GGCCGTCGGAATCCTGTG 60.512 66.667 17.49 0.00 0.00 3.66
5266 5865 3.782443 GGGCCGTCGGAATCCTGT 61.782 66.667 17.49 0.00 0.00 4.00
5267 5866 4.891727 CGGGCCGTCGGAATCCTG 62.892 72.222 19.97 8.23 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.