Multiple sequence alignment - TraesCS4D01G319500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G319500 chr4D 100.000 3703 0 0 1 3703 483175525 483179227 0.000000e+00 6839.0
1 TraesCS4D01G319500 chr4B 96.534 1587 40 4 537 2123 613909742 613908171 0.000000e+00 2612.0
2 TraesCS4D01G319500 chr4B 91.797 768 41 10 2118 2875 613908121 613907366 0.000000e+00 1050.0
3 TraesCS4D01G319500 chr4B 91.135 282 13 4 3 282 613910009 613909738 4.520000e-99 372.0
4 TraesCS4D01G319500 chr4B 91.057 123 10 1 3072 3193 613907107 613906985 8.230000e-37 165.0
5 TraesCS4D01G319500 chr4B 94.737 76 4 0 3628 3703 613906387 613906312 6.500000e-23 119.0
6 TraesCS4D01G319500 chr5A 94.069 1585 63 16 541 2123 663372029 663373584 0.000000e+00 2377.0
7 TraesCS4D01G319500 chr5A 89.033 848 62 21 2118 2953 663373634 663374462 0.000000e+00 1022.0
8 TraesCS4D01G319500 chr5A 89.170 277 19 6 3 277 663371757 663372024 5.930000e-88 335.0
9 TraesCS4D01G319500 chr5A 83.436 163 10 9 3543 3703 663375459 663375606 6.450000e-28 135.0
10 TraesCS4D01G319500 chr1B 77.555 1145 178 51 961 2082 547165858 547166946 5.250000e-173 617.0
11 TraesCS4D01G319500 chr1B 79.570 465 70 16 2338 2799 547167294 547167736 3.590000e-80 309.0
12 TraesCS4D01G319500 chr2D 98.810 252 3 0 289 540 579761494 579761243 2.030000e-122 449.0
13 TraesCS4D01G319500 chr2D 95.911 269 11 0 273 541 535240026 535240294 1.580000e-118 436.0
14 TraesCS4D01G319500 chr2D 94.275 262 15 0 279 540 368526799 368527060 5.760000e-108 401.0
15 TraesCS4D01G319500 chr1D 79.968 624 99 16 1472 2082 406819620 406820230 1.580000e-118 436.0
16 TraesCS4D01G319500 chr1D 84.078 358 40 9 953 1308 406819204 406819546 2.760000e-86 329.0
17 TraesCS4D01G319500 chr6D 94.757 267 14 0 273 539 450528998 450529264 2.060000e-112 416.0
18 TraesCS4D01G319500 chr6D 95.076 264 12 1 279 542 444471233 444470971 7.400000e-112 414.0
19 TraesCS4D01G319500 chr2A 95.038 262 13 0 279 540 578489077 578488816 2.660000e-111 412.0
20 TraesCS4D01G319500 chr2A 93.657 268 16 1 275 542 631201668 631201934 2.070000e-107 399.0
21 TraesCS4D01G319500 chr6A 94.636 261 14 0 279 539 187738694 187738954 4.450000e-109 405.0
22 TraesCS4D01G319500 chr6A 100.000 46 0 0 1392 1437 506642829 506642874 6.590000e-13 86.1
23 TraesCS4D01G319500 chrUn 94.636 261 13 1 279 539 29715035 29714776 1.600000e-108 403.0
24 TraesCS4D01G319500 chr1A 81.499 427 57 15 2378 2803 502500222 502500627 7.670000e-87 331.0
25 TraesCS4D01G319500 chr1A 82.083 240 27 8 1071 1308 502498928 502499153 1.360000e-44 191.0
26 TraesCS4D01G319500 chr3D 100.000 47 0 0 1391 1437 5879372 5879418 1.830000e-13 87.9
27 TraesCS4D01G319500 chr3D 90.476 63 3 2 1385 1447 126219682 126219623 3.070000e-11 80.5
28 TraesCS4D01G319500 chr5B 100.000 45 0 0 1393 1437 170586177 170586133 2.370000e-12 84.2
29 TraesCS4D01G319500 chr2B 96.078 51 1 1 1387 1437 191749231 191749280 8.520000e-12 82.4
30 TraesCS4D01G319500 chr3B 94.340 53 2 1 1385 1437 180277644 180277593 3.070000e-11 80.5
31 TraesCS4D01G319500 chr3B 89.831 59 4 2 3514 3570 7131668 7131726 1.430000e-09 75.0
32 TraesCS4D01G319500 chr3B 100.000 33 0 0 3538 3570 7175627 7175659 1.110000e-05 62.1
33 TraesCS4D01G319500 chr3A 92.453 53 3 1 1385 1437 135971586 135971535 1.430000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G319500 chr4D 483175525 483179227 3702 False 6839.00 6839 100.0000 1 3703 1 chr4D.!!$F1 3702
1 TraesCS4D01G319500 chr4B 613906312 613910009 3697 True 863.60 2612 93.0520 3 3703 5 chr4B.!!$R1 3700
2 TraesCS4D01G319500 chr5A 663371757 663375606 3849 False 967.25 2377 88.9270 3 3703 4 chr5A.!!$F1 3700
3 TraesCS4D01G319500 chr1B 547165858 547167736 1878 False 463.00 617 78.5625 961 2799 2 chr1B.!!$F1 1838
4 TraesCS4D01G319500 chr1D 406819204 406820230 1026 False 382.50 436 82.0230 953 2082 2 chr1D.!!$F1 1129
5 TraesCS4D01G319500 chr1A 502498928 502500627 1699 False 261.00 331 81.7910 1071 2803 2 chr1A.!!$F1 1732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 757 0.111639 TTGGGACCAGCAAACCCTAC 59.888 55.000 0.00 0.0 43.59 3.18 F
1910 1998 1.301716 GAAGCTTCACGGCCTCACA 60.302 57.895 21.67 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2681 2890 0.038744 ATTTGAGAGGCCACCACCAG 59.961 55.0 5.01 0.0 0.00 4.00 R
3173 3486 0.038599 TCTGTGCCAATGCCATGTCT 59.961 50.0 0.00 0.0 36.33 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.017442 GCCTTTTTCCCTCAGATACACC 58.983 50.000 0.00 0.00 0.00 4.16
120 121 2.284952 TCGACATGCGCTTGAATATGTG 59.715 45.455 27.85 12.85 40.61 3.21
121 122 2.284952 CGACATGCGCTTGAATATGTGA 59.715 45.455 27.85 0.00 34.18 3.58
122 123 3.059393 CGACATGCGCTTGAATATGTGAT 60.059 43.478 27.85 3.72 34.18 3.06
123 124 4.150451 CGACATGCGCTTGAATATGTGATA 59.850 41.667 27.85 0.00 34.18 2.15
124 125 5.333263 CGACATGCGCTTGAATATGTGATAA 60.333 40.000 27.85 0.00 34.18 1.75
125 126 6.564709 ACATGCGCTTGAATATGTGATAAT 57.435 33.333 27.85 0.00 32.90 1.28
126 127 6.376177 ACATGCGCTTGAATATGTGATAATG 58.624 36.000 27.85 10.54 32.90 1.90
127 128 6.016860 ACATGCGCTTGAATATGTGATAATGT 60.017 34.615 27.85 11.17 32.90 2.71
163 164 0.984995 GGTGGACTAGAGGTTTGGCT 59.015 55.000 0.00 0.00 0.00 4.75
168 169 0.995024 ACTAGAGGTTTGGCTGGCAT 59.005 50.000 4.22 0.00 0.00 4.40
173 177 2.025037 AGAGGTTTGGCTGGCATTGATA 60.025 45.455 4.22 0.00 0.00 2.15
200 205 5.562506 AAGAATGCTGTGTCATGATTCTG 57.437 39.130 0.00 0.91 34.39 3.02
250 255 8.449423 AACATTATAGGATATACTGGGCTGAA 57.551 34.615 0.00 0.00 0.00 3.02
262 269 3.645687 ACTGGGCTGAAGGCAAAATAAAA 59.354 39.130 6.20 0.00 44.01 1.52
268 275 7.721399 TGGGCTGAAGGCAAAATAAAATAAAAA 59.279 29.630 6.20 0.00 44.01 1.94
288 295 7.568199 AAAAATTCACAATATACTCCCTCCG 57.432 36.000 0.00 0.00 0.00 4.63
289 296 5.888982 AATTCACAATATACTCCCTCCGT 57.111 39.130 0.00 0.00 0.00 4.69
290 297 5.888982 ATTCACAATATACTCCCTCCGTT 57.111 39.130 0.00 0.00 0.00 4.44
291 298 5.687166 TTCACAATATACTCCCTCCGTTT 57.313 39.130 0.00 0.00 0.00 3.60
292 299 5.687166 TCACAATATACTCCCTCCGTTTT 57.313 39.130 0.00 0.00 0.00 2.43
293 300 6.057321 TCACAATATACTCCCTCCGTTTTT 57.943 37.500 0.00 0.00 0.00 1.94
294 301 7.185318 TCACAATATACTCCCTCCGTTTTTA 57.815 36.000 0.00 0.00 0.00 1.52
295 302 7.798071 TCACAATATACTCCCTCCGTTTTTAT 58.202 34.615 0.00 0.00 0.00 1.40
296 303 8.269317 TCACAATATACTCCCTCCGTTTTTATT 58.731 33.333 0.00 0.00 0.00 1.40
297 304 8.899771 CACAATATACTCCCTCCGTTTTTATTT 58.100 33.333 0.00 0.00 0.00 1.40
302 309 8.728337 ATACTCCCTCCGTTTTTATTTACTTC 57.272 34.615 0.00 0.00 0.00 3.01
303 310 5.640783 ACTCCCTCCGTTTTTATTTACTTCG 59.359 40.000 0.00 0.00 0.00 3.79
304 311 4.392754 TCCCTCCGTTTTTATTTACTTCGC 59.607 41.667 0.00 0.00 0.00 4.70
305 312 4.154556 CCCTCCGTTTTTATTTACTTCGCA 59.845 41.667 0.00 0.00 0.00 5.10
306 313 5.163693 CCCTCCGTTTTTATTTACTTCGCAT 60.164 40.000 0.00 0.00 0.00 4.73
307 314 6.037391 CCCTCCGTTTTTATTTACTTCGCATA 59.963 38.462 0.00 0.00 0.00 3.14
308 315 7.255001 CCCTCCGTTTTTATTTACTTCGCATAT 60.255 37.037 0.00 0.00 0.00 1.78
309 316 8.126700 CCTCCGTTTTTATTTACTTCGCATATT 58.873 33.333 0.00 0.00 0.00 1.28
312 319 8.889000 CCGTTTTTATTTACTTCGCATATTAGC 58.111 33.333 0.00 0.00 0.00 3.09
313 320 9.646336 CGTTTTTATTTACTTCGCATATTAGCT 57.354 29.630 0.00 0.00 0.00 3.32
317 324 9.944663 TTTATTTACTTCGCATATTAGCTTTGG 57.055 29.630 0.00 0.00 0.00 3.28
318 325 6.995511 TTTACTTCGCATATTAGCTTTGGT 57.004 33.333 0.00 0.00 0.00 3.67
319 326 6.598753 TTACTTCGCATATTAGCTTTGGTC 57.401 37.500 0.00 0.00 0.00 4.02
320 327 4.513442 ACTTCGCATATTAGCTTTGGTCA 58.487 39.130 0.00 0.00 0.00 4.02
321 328 4.941263 ACTTCGCATATTAGCTTTGGTCAA 59.059 37.500 0.00 0.00 0.00 3.18
322 329 5.414454 ACTTCGCATATTAGCTTTGGTCAAA 59.586 36.000 0.00 0.00 0.00 2.69
338 345 8.865590 TTTGGTCAAAGTCAAGCTTTATAAAC 57.134 30.769 0.00 0.00 44.95 2.01
339 346 7.817418 TGGTCAAAGTCAAGCTTTATAAACT 57.183 32.000 0.00 0.00 44.95 2.66
340 347 8.232913 TGGTCAAAGTCAAGCTTTATAAACTT 57.767 30.769 0.00 0.00 44.95 2.66
341 348 8.691797 TGGTCAAAGTCAAGCTTTATAAACTTT 58.308 29.630 0.00 5.64 44.95 2.66
416 423 9.832445 ACCATTAGATTCATTATTGAACGTACT 57.168 29.630 2.28 3.82 44.36 2.73
422 429 8.808529 AGATTCATTATTGAACGTACTTTCTCG 58.191 33.333 12.72 0.00 44.36 4.04
423 430 7.878477 TTCATTATTGAACGTACTTTCTCGT 57.122 32.000 12.72 2.69 42.12 4.18
424 431 7.502177 TCATTATTGAACGTACTTTCTCGTC 57.498 36.000 12.72 0.00 39.39 4.20
425 432 7.085746 TCATTATTGAACGTACTTTCTCGTCA 58.914 34.615 12.72 0.00 39.39 4.35
426 433 7.758076 TCATTATTGAACGTACTTTCTCGTCAT 59.242 33.333 12.72 1.72 39.39 3.06
427 434 9.016623 CATTATTGAACGTACTTTCTCGTCATA 57.983 33.333 12.72 0.96 39.39 2.15
428 435 9.745880 ATTATTGAACGTACTTTCTCGTCATAT 57.254 29.630 12.72 0.17 39.39 1.78
430 437 8.783999 ATTGAACGTACTTTCTCGTCATATAG 57.216 34.615 12.72 0.00 39.39 1.31
431 438 7.543947 TGAACGTACTTTCTCGTCATATAGA 57.456 36.000 12.72 0.00 39.39 1.98
432 439 8.151141 TGAACGTACTTTCTCGTCATATAGAT 57.849 34.615 12.72 0.00 39.39 1.98
433 440 8.618677 TGAACGTACTTTCTCGTCATATAGATT 58.381 33.333 12.72 0.00 39.39 2.40
434 441 9.448294 GAACGTACTTTCTCGTCATATAGATTT 57.552 33.333 4.91 0.00 39.39 2.17
435 442 9.798994 AACGTACTTTCTCGTCATATAGATTTT 57.201 29.630 0.00 0.00 39.39 1.82
436 443 9.798994 ACGTACTTTCTCGTCATATAGATTTTT 57.201 29.630 0.00 0.00 35.30 1.94
515 522 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
516 523 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
517 524 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
533 540 5.873179 TGCAGAGTAAATAAAAACGGAGG 57.127 39.130 0.00 0.00 0.00 4.30
534 541 4.698304 TGCAGAGTAAATAAAAACGGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
535 542 4.939439 GCAGAGTAAATAAAAACGGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
643 650 5.847304 TGCTACTATCTGCTACCATTTCTG 58.153 41.667 0.00 0.00 0.00 3.02
650 657 4.569943 TCTGCTACCATTTCTGTTCAGTC 58.430 43.478 0.00 0.00 0.00 3.51
750 757 0.111639 TTGGGACCAGCAAACCCTAC 59.888 55.000 0.00 0.00 43.59 3.18
759 766 3.253432 CCAGCAAACCCTACTTTCTTCAC 59.747 47.826 0.00 0.00 0.00 3.18
794 801 9.230122 TCAAGAATACATTGTAGCTTGAATCAA 57.770 29.630 26.34 14.01 38.84 2.57
807 814 6.268566 AGCTTGAATCAACAAAAGACAAGAC 58.731 36.000 0.00 0.00 36.43 3.01
893 900 9.394477 GTTGTGATCTGTTTTATTTGTAGAACC 57.606 33.333 0.00 0.00 0.00 3.62
1149 1156 7.225011 CAGTTCTCCTTAGAAGGGTACTTTTT 58.775 38.462 8.46 0.00 46.47 1.94
1172 1181 8.786826 TTTGTTCTATAACCTCGTGATGATTT 57.213 30.769 0.00 0.00 34.49 2.17
1174 1183 6.257849 TGTTCTATAACCTCGTGATGATTTGC 59.742 38.462 0.00 0.00 34.49 3.68
1175 1184 6.161855 TCTATAACCTCGTGATGATTTGCT 57.838 37.500 0.00 0.00 0.00 3.91
1176 1185 6.582636 TCTATAACCTCGTGATGATTTGCTT 58.417 36.000 0.00 0.00 0.00 3.91
1177 1186 7.722363 TCTATAACCTCGTGATGATTTGCTTA 58.278 34.615 0.00 0.00 0.00 3.09
1178 1187 8.367911 TCTATAACCTCGTGATGATTTGCTTAT 58.632 33.333 0.00 0.00 0.00 1.73
1179 1188 7.807977 ATAACCTCGTGATGATTTGCTTATT 57.192 32.000 0.00 0.00 0.00 1.40
1180 1189 5.741388 ACCTCGTGATGATTTGCTTATTC 57.259 39.130 0.00 0.00 0.00 1.75
1181 1190 4.576463 ACCTCGTGATGATTTGCTTATTCC 59.424 41.667 0.00 0.00 0.00 3.01
1182 1191 4.818546 CCTCGTGATGATTTGCTTATTCCT 59.181 41.667 0.00 0.00 0.00 3.36
1183 1192 5.049818 CCTCGTGATGATTTGCTTATTCCTC 60.050 44.000 0.00 0.00 0.00 3.71
1184 1193 5.674525 TCGTGATGATTTGCTTATTCCTCT 58.325 37.500 0.00 0.00 0.00 3.69
1185 1194 5.525012 TCGTGATGATTTGCTTATTCCTCTG 59.475 40.000 0.00 0.00 0.00 3.35
1186 1195 5.525012 CGTGATGATTTGCTTATTCCTCTGA 59.475 40.000 0.00 0.00 0.00 3.27
1187 1196 6.037500 CGTGATGATTTGCTTATTCCTCTGAA 59.962 38.462 0.00 0.00 34.33 3.02
1188 1197 7.416022 GTGATGATTTGCTTATTCCTCTGAAG 58.584 38.462 0.00 0.00 33.05 3.02
1273 1283 6.403200 CCTGTATACCTTTTCATGTTTCCACG 60.403 42.308 0.00 0.00 0.00 4.94
1316 1326 7.642669 TGTTGCTCTCTTGATCTTAACAAAAG 58.357 34.615 0.00 0.00 0.00 2.27
1318 1328 5.182001 TGCTCTCTTGATCTTAACAAAAGCC 59.818 40.000 0.00 0.00 0.00 4.35
1328 1338 9.733556 TGATCTTAACAAAAGCCAACTAAGATA 57.266 29.630 0.00 0.00 36.63 1.98
1358 1368 9.965824 AATTTGATAACACTTTTAACTGAGGTG 57.034 29.630 0.00 0.00 0.00 4.00
1379 1389 5.221382 GGTGACACTTGTACTTGAGACCTTA 60.221 44.000 5.39 0.00 0.00 2.69
1827 1915 9.653287 TTAATCTTGAGTTCTCAACGTCAATAT 57.347 29.630 10.67 0.00 36.23 1.28
1910 1998 1.301716 GAAGCTTCACGGCCTCACA 60.302 57.895 21.67 0.00 0.00 3.58
2202 2355 7.041712 TGCGTCAAGATGTTTTTCATAAGTACA 60.042 33.333 0.00 0.00 36.83 2.90
2243 2416 5.590530 AGTTACTTGGTGAATTTGCAACA 57.409 34.783 0.00 0.00 32.74 3.33
2329 2526 9.116067 AGTTCAATGTAGTCTGTAGAGAGATAC 57.884 37.037 0.00 0.00 0.00 2.24
2464 2673 8.204836 AGTATCATTTTATCCTGTGTAGGTGAC 58.795 37.037 0.00 0.00 44.88 3.67
2733 2942 4.021981 TCATGTCCTTAGATGCGACATAGG 60.022 45.833 1.88 0.00 43.60 2.57
2734 2943 3.562182 TGTCCTTAGATGCGACATAGGA 58.438 45.455 6.01 6.01 31.74 2.94
2735 2944 4.152647 TGTCCTTAGATGCGACATAGGAT 58.847 43.478 10.83 0.00 34.57 3.24
2736 2945 4.021981 TGTCCTTAGATGCGACATAGGATG 60.022 45.833 10.83 0.00 34.57 3.51
2737 2946 4.218635 GTCCTTAGATGCGACATAGGATGA 59.781 45.833 10.83 0.00 34.57 2.92
2738 2947 4.832823 TCCTTAGATGCGACATAGGATGAA 59.167 41.667 6.01 0.00 0.00 2.57
2743 2952 5.960113 AGATGCGACATAGGATGAATACTC 58.040 41.667 0.00 0.00 0.00 2.59
2761 2974 3.878778 ACTCATTTCCAGTGGTAGCATC 58.121 45.455 9.54 0.00 0.00 3.91
2765 2978 5.368145 TCATTTCCAGTGGTAGCATCATAC 58.632 41.667 9.54 0.00 0.00 2.39
2766 2979 4.835284 TTTCCAGTGGTAGCATCATACA 57.165 40.909 9.54 0.00 0.00 2.29
2775 2988 7.228108 CAGTGGTAGCATCATACAAAATGATCT 59.772 37.037 0.00 2.63 36.69 2.75
2791 3004 7.664552 AAATGATCTGGATGGCTGAAATTTA 57.335 32.000 0.00 0.00 0.00 1.40
2792 3005 6.896021 ATGATCTGGATGGCTGAAATTTAG 57.104 37.500 0.00 0.00 0.00 1.85
2793 3006 5.759059 TGATCTGGATGGCTGAAATTTAGT 58.241 37.500 0.00 0.00 0.00 2.24
2794 3007 5.591472 TGATCTGGATGGCTGAAATTTAGTG 59.409 40.000 0.00 0.00 0.00 2.74
2795 3008 3.696051 TCTGGATGGCTGAAATTTAGTGC 59.304 43.478 0.00 0.00 0.00 4.40
2796 3009 3.429492 TGGATGGCTGAAATTTAGTGCA 58.571 40.909 10.35 0.00 0.00 4.57
2804 3018 6.101332 GGCTGAAATTTAGTGCATGATTTCA 58.899 36.000 19.39 19.39 42.78 2.69
2816 3030 3.129813 GCATGATTTCAATGCACCTCTCA 59.870 43.478 0.00 0.00 40.72 3.27
2838 3052 2.643232 CCTGCTTGAAGCTTGGGCC 61.643 63.158 18.94 0.00 42.97 5.80
2840 3054 1.228956 TGCTTGAAGCTTGGGCCAT 60.229 52.632 18.94 0.00 42.97 4.40
2841 3055 1.217244 GCTTGAAGCTTGGGCCATG 59.783 57.895 7.26 11.78 38.45 3.66
2848 3062 1.197812 AGCTTGGGCCATGGATTTTC 58.802 50.000 18.40 0.00 39.73 2.29
2852 3066 3.602483 CTTGGGCCATGGATTTTCTTTG 58.398 45.455 18.40 0.00 0.00 2.77
2853 3067 1.907936 TGGGCCATGGATTTTCTTTGG 59.092 47.619 18.40 0.00 0.00 3.28
2875 3094 1.013596 TTAACCGGATGCTTGCGATG 58.986 50.000 9.46 1.86 39.29 3.84
2877 3096 3.204119 CCGGATGCTTGCGATGCA 61.204 61.111 15.08 0.00 44.95 3.96
2882 3101 2.182284 TGCTTGCGATGCATTGGC 59.818 55.556 15.85 15.21 38.76 4.52
2886 3105 2.924922 CTTGCGATGCATTGGCGGTC 62.925 60.000 15.85 0.00 45.35 4.79
2888 3107 1.887242 GCGATGCATTGGCGGTCTA 60.887 57.895 15.85 0.00 45.35 2.59
2889 3108 1.835483 GCGATGCATTGGCGGTCTAG 61.835 60.000 15.85 0.00 45.35 2.43
2894 3113 0.179045 GCATTGGCGGTCTAGGATGT 60.179 55.000 0.00 0.00 0.00 3.06
2896 3115 2.755650 CATTGGCGGTCTAGGATGTAC 58.244 52.381 0.00 0.00 0.00 2.90
2897 3116 2.154567 TTGGCGGTCTAGGATGTACT 57.845 50.000 0.00 0.00 0.00 2.73
2898 3117 1.688772 TGGCGGTCTAGGATGTACTC 58.311 55.000 0.00 0.00 0.00 2.59
2899 3118 0.960286 GGCGGTCTAGGATGTACTCC 59.040 60.000 0.00 0.00 45.33 3.85
2911 3130 4.381411 GGATGTACTCCTATGAACCAAGC 58.619 47.826 0.00 0.00 41.29 4.01
2912 3131 4.101741 GGATGTACTCCTATGAACCAAGCT 59.898 45.833 0.00 0.00 41.29 3.74
2913 3132 4.471904 TGTACTCCTATGAACCAAGCTG 57.528 45.455 0.00 0.00 0.00 4.24
2914 3133 3.838317 TGTACTCCTATGAACCAAGCTGT 59.162 43.478 0.00 0.00 0.00 4.40
2915 3134 5.020795 TGTACTCCTATGAACCAAGCTGTA 58.979 41.667 0.00 0.00 0.00 2.74
2916 3135 4.744795 ACTCCTATGAACCAAGCTGTAG 57.255 45.455 0.00 0.00 0.00 2.74
2917 3136 4.097418 ACTCCTATGAACCAAGCTGTAGT 58.903 43.478 0.00 0.00 0.00 2.73
2918 3137 5.269991 ACTCCTATGAACCAAGCTGTAGTA 58.730 41.667 0.00 0.00 0.00 1.82
2919 3138 5.127356 ACTCCTATGAACCAAGCTGTAGTAC 59.873 44.000 0.00 0.00 0.00 2.73
2920 3139 5.020795 TCCTATGAACCAAGCTGTAGTACA 58.979 41.667 2.36 2.36 0.00 2.90
2921 3140 5.661312 TCCTATGAACCAAGCTGTAGTACAT 59.339 40.000 2.82 0.00 0.00 2.29
2922 3141 5.755375 CCTATGAACCAAGCTGTAGTACATG 59.245 44.000 2.82 0.00 0.00 3.21
2923 3142 3.334691 TGAACCAAGCTGTAGTACATGC 58.665 45.455 2.82 9.63 0.00 4.06
2924 3143 3.007940 TGAACCAAGCTGTAGTACATGCT 59.992 43.478 16.68 16.68 35.28 3.79
2925 3144 2.977914 ACCAAGCTGTAGTACATGCTG 58.022 47.619 20.69 14.47 34.49 4.41
2926 3145 1.667724 CCAAGCTGTAGTACATGCTGC 59.332 52.381 20.69 13.64 38.48 5.25
2927 3146 1.667724 CAAGCTGTAGTACATGCTGCC 59.332 52.381 20.69 2.46 38.90 4.85
2935 3154 0.393537 GTACATGCTGCCTGCCTTCT 60.394 55.000 4.77 0.00 42.00 2.85
2941 3163 0.393537 GCTGCCTGCCTTCTGTATGT 60.394 55.000 0.00 0.00 35.15 2.29
2942 3164 1.134401 GCTGCCTGCCTTCTGTATGTA 60.134 52.381 0.00 0.00 35.15 2.29
2953 3175 4.081420 CCTTCTGTATGTAGGCTGTGAAGT 60.081 45.833 0.00 0.00 0.00 3.01
2954 3176 4.456280 TCTGTATGTAGGCTGTGAAGTG 57.544 45.455 0.00 0.00 0.00 3.16
2955 3177 2.932614 CTGTATGTAGGCTGTGAAGTGC 59.067 50.000 0.00 0.00 0.00 4.40
2958 3180 1.882912 TGTAGGCTGTGAAGTGCAAG 58.117 50.000 0.00 0.00 0.00 4.01
2959 3181 1.140852 TGTAGGCTGTGAAGTGCAAGT 59.859 47.619 0.00 0.00 0.00 3.16
2960 3182 2.222027 GTAGGCTGTGAAGTGCAAGTT 58.778 47.619 0.00 0.00 0.00 2.66
2961 3183 1.767759 AGGCTGTGAAGTGCAAGTTT 58.232 45.000 0.00 0.00 0.00 2.66
2963 3185 3.490348 AGGCTGTGAAGTGCAAGTTTAT 58.510 40.909 0.00 0.00 0.00 1.40
2964 3186 3.254166 AGGCTGTGAAGTGCAAGTTTATG 59.746 43.478 0.00 0.00 0.00 1.90
2965 3187 3.568538 GCTGTGAAGTGCAAGTTTATGG 58.431 45.455 0.00 0.00 0.00 2.74
2966 3188 3.253188 GCTGTGAAGTGCAAGTTTATGGA 59.747 43.478 0.00 0.00 0.00 3.41
2967 3189 4.261572 GCTGTGAAGTGCAAGTTTATGGAA 60.262 41.667 0.00 0.00 0.00 3.53
2968 3190 5.437289 TGTGAAGTGCAAGTTTATGGAAG 57.563 39.130 0.00 0.00 0.00 3.46
2974 3287 8.470805 TGAAGTGCAAGTTTATGGAAGTTTTTA 58.529 29.630 0.00 0.00 0.00 1.52
2976 3289 9.476202 AAGTGCAAGTTTATGGAAGTTTTTATC 57.524 29.630 0.00 0.00 0.00 1.75
2981 3294 8.371699 CAAGTTTATGGAAGTTTTTATCCCCAA 58.628 33.333 0.00 0.00 34.68 4.12
2991 3304 7.790782 AGTTTTTATCCCCAAAATAAGCTGA 57.209 32.000 0.00 0.00 0.00 4.26
3001 3314 8.147704 TCCCCAAAATAAGCTGAAGTTTTTAAG 58.852 33.333 0.00 0.00 0.00 1.85
3025 3338 8.954950 AGTGATGATATCTTTACAGTTGGAAG 57.045 34.615 13.74 0.00 0.00 3.46
3026 3339 8.543774 AGTGATGATATCTTTACAGTTGGAAGT 58.456 33.333 13.74 0.00 0.00 3.01
3028 3341 6.985188 TGATATCTTTACAGTTGGAAGTGC 57.015 37.500 3.98 0.00 32.54 4.40
3029 3342 6.472016 TGATATCTTTACAGTTGGAAGTGCA 58.528 36.000 3.98 0.00 32.54 4.57
3030 3343 6.939730 TGATATCTTTACAGTTGGAAGTGCAA 59.060 34.615 3.98 0.00 32.54 4.08
3031 3344 5.695851 ATCTTTACAGTTGGAAGTGCAAG 57.304 39.130 0.00 0.00 32.54 4.01
3034 3347 4.893424 TTACAGTTGGAAGTGCAAGTTC 57.107 40.909 0.00 0.00 45.55 3.01
3043 3356 4.410492 GAAGTGCAAGTTCATGTACCTG 57.590 45.455 0.00 0.00 45.59 4.00
3044 3357 2.154462 AGTGCAAGTTCATGTACCTGC 58.846 47.619 16.62 16.62 36.69 4.85
3045 3358 2.154462 GTGCAAGTTCATGTACCTGCT 58.846 47.619 21.88 0.00 36.62 4.24
3047 3360 2.038952 TGCAAGTTCATGTACCTGCTCT 59.961 45.455 21.88 0.00 36.62 4.09
3048 3361 3.260632 TGCAAGTTCATGTACCTGCTCTA 59.739 43.478 21.88 4.54 36.62 2.43
3049 3362 3.619038 GCAAGTTCATGTACCTGCTCTAC 59.381 47.826 16.30 0.00 33.66 2.59
3050 3363 4.621747 GCAAGTTCATGTACCTGCTCTACT 60.622 45.833 16.30 0.00 33.66 2.57
3051 3364 4.727507 AGTTCATGTACCTGCTCTACTG 57.272 45.455 0.00 0.00 0.00 2.74
3052 3365 4.344978 AGTTCATGTACCTGCTCTACTGA 58.655 43.478 0.00 0.00 0.00 3.41
3053 3366 4.772624 AGTTCATGTACCTGCTCTACTGAA 59.227 41.667 0.00 0.00 0.00 3.02
3054 3367 5.246203 AGTTCATGTACCTGCTCTACTGAAA 59.754 40.000 0.00 0.00 0.00 2.69
3055 3368 5.939764 TCATGTACCTGCTCTACTGAAAT 57.060 39.130 0.00 0.00 0.00 2.17
3056 3369 6.299805 TCATGTACCTGCTCTACTGAAATT 57.700 37.500 0.00 0.00 0.00 1.82
3057 3370 6.108687 TCATGTACCTGCTCTACTGAAATTG 58.891 40.000 0.00 0.00 0.00 2.32
3058 3371 4.253685 TGTACCTGCTCTACTGAAATTGC 58.746 43.478 0.00 0.00 0.00 3.56
3059 3372 2.350522 ACCTGCTCTACTGAAATTGCG 58.649 47.619 0.00 0.00 0.00 4.85
3060 3373 1.063174 CCTGCTCTACTGAAATTGCGC 59.937 52.381 0.00 0.00 0.00 6.09
3061 3374 1.733912 CTGCTCTACTGAAATTGCGCA 59.266 47.619 5.66 5.66 0.00 6.09
3062 3375 1.733912 TGCTCTACTGAAATTGCGCAG 59.266 47.619 11.31 0.00 38.10 5.18
3063 3376 1.063174 GCTCTACTGAAATTGCGCAGG 59.937 52.381 11.31 0.66 36.47 4.85
3064 3377 2.621338 CTCTACTGAAATTGCGCAGGA 58.379 47.619 11.31 0.00 36.47 3.86
3065 3378 2.606725 CTCTACTGAAATTGCGCAGGAG 59.393 50.000 11.31 3.74 43.10 3.69
3066 3379 1.667724 CTACTGAAATTGCGCAGGAGG 59.332 52.381 11.31 2.91 39.03 4.30
3067 3380 0.962356 ACTGAAATTGCGCAGGAGGG 60.962 55.000 11.31 3.49 36.47 4.30
3068 3381 0.962356 CTGAAATTGCGCAGGAGGGT 60.962 55.000 11.31 0.00 0.00 4.34
3069 3382 0.326595 TGAAATTGCGCAGGAGGGTA 59.673 50.000 11.31 0.00 0.00 3.69
3070 3383 1.064758 TGAAATTGCGCAGGAGGGTAT 60.065 47.619 11.31 0.00 0.00 2.73
3123 3436 1.144057 CCCAGCTTGGCGTACTAGG 59.856 63.158 0.00 0.00 35.79 3.02
3126 3439 1.084370 CAGCTTGGCGTACTAGGTGC 61.084 60.000 9.03 0.00 41.87 5.01
3134 3447 1.901085 GTACTAGGTGCTGCTGGCT 59.099 57.895 0.00 0.00 42.39 4.75
3173 3486 0.111061 AGAAGTTGGTGCTGGCATGA 59.889 50.000 0.00 0.00 0.00 3.07
3174 3487 0.524862 GAAGTTGGTGCTGGCATGAG 59.475 55.000 0.00 0.00 0.00 2.90
3175 3488 0.111061 AAGTTGGTGCTGGCATGAGA 59.889 50.000 0.00 0.00 0.00 3.27
3176 3489 0.607489 AGTTGGTGCTGGCATGAGAC 60.607 55.000 0.00 0.00 0.00 3.36
3177 3490 0.890542 GTTGGTGCTGGCATGAGACA 60.891 55.000 0.00 0.00 0.00 3.41
3178 3491 0.038599 TTGGTGCTGGCATGAGACAT 59.961 50.000 0.00 0.00 27.70 3.06
3179 3492 0.678684 TGGTGCTGGCATGAGACATG 60.679 55.000 0.00 7.29 27.70 3.21
3180 3493 1.381928 GGTGCTGGCATGAGACATGG 61.382 60.000 12.56 0.00 27.70 3.66
3181 3494 1.751544 TGCTGGCATGAGACATGGC 60.752 57.895 24.33 24.33 43.83 4.40
3185 3498 3.959478 GGCATGAGACATGGCATTG 57.041 52.632 25.51 0.00 43.15 2.82
3187 3500 0.249322 GCATGAGACATGGCATTGGC 60.249 55.000 0.00 2.73 40.13 4.52
3188 3501 1.107945 CATGAGACATGGCATTGGCA 58.892 50.000 15.86 15.86 43.71 4.92
3189 3502 1.108776 ATGAGACATGGCATTGGCAC 58.891 50.000 15.84 3.08 41.84 5.01
3190 3503 0.251253 TGAGACATGGCATTGGCACA 60.251 50.000 15.84 5.72 41.84 4.57
3191 3504 0.454600 GAGACATGGCATTGGCACAG 59.545 55.000 15.84 13.26 41.84 3.66
3192 3505 0.038599 AGACATGGCATTGGCACAGA 59.961 50.000 15.84 0.00 41.84 3.41
3193 3506 0.171903 GACATGGCATTGGCACAGAC 59.828 55.000 15.84 7.96 41.84 3.51
3194 3507 1.252904 ACATGGCATTGGCACAGACC 61.253 55.000 15.84 0.00 41.84 3.85
3195 3508 2.048023 ATGGCATTGGCACAGACCG 61.048 57.895 15.84 0.00 41.84 4.79
3201 3514 0.320771 ATTGGCACAGACCGACAGAC 60.321 55.000 0.00 0.00 42.39 3.51
3211 3524 0.172803 ACCGACAGACGATTACTGGC 59.827 55.000 0.00 0.00 45.77 4.85
3212 3525 0.527817 CCGACAGACGATTACTGGCC 60.528 60.000 0.00 0.00 45.77 5.36
3213 3526 0.527817 CGACAGACGATTACTGGCCC 60.528 60.000 0.00 0.00 45.77 5.80
3216 3529 1.066143 ACAGACGATTACTGGCCCTTG 60.066 52.381 0.00 0.00 39.38 3.61
3217 3530 1.207089 CAGACGATTACTGGCCCTTGA 59.793 52.381 0.00 0.00 0.00 3.02
3218 3531 2.119495 AGACGATTACTGGCCCTTGAT 58.881 47.619 0.00 0.00 0.00 2.57
3219 3532 3.069586 CAGACGATTACTGGCCCTTGATA 59.930 47.826 0.00 0.00 0.00 2.15
3220 3533 3.709653 AGACGATTACTGGCCCTTGATAA 59.290 43.478 0.00 0.00 0.00 1.75
3222 3535 5.542635 AGACGATTACTGGCCCTTGATAATA 59.457 40.000 0.00 0.00 0.00 0.98
3224 3537 6.173339 ACGATTACTGGCCCTTGATAATATG 58.827 40.000 0.00 0.00 0.00 1.78
3226 3539 7.050377 CGATTACTGGCCCTTGATAATATGAT 58.950 38.462 0.00 0.00 0.00 2.45
3227 3540 7.225538 CGATTACTGGCCCTTGATAATATGATC 59.774 40.741 0.00 0.00 0.00 2.92
3228 3541 7.574021 TTACTGGCCCTTGATAATATGATCT 57.426 36.000 0.00 0.00 0.00 2.75
3229 3542 8.679344 TTACTGGCCCTTGATAATATGATCTA 57.321 34.615 0.00 0.00 0.00 1.98
3231 3544 8.167691 ACTGGCCCTTGATAATATGATCTATT 57.832 34.615 0.00 0.00 0.00 1.73
3232 3545 8.618385 ACTGGCCCTTGATAATATGATCTATTT 58.382 33.333 0.00 0.00 0.00 1.40
3233 3546 9.471702 CTGGCCCTTGATAATATGATCTATTTT 57.528 33.333 0.00 0.00 0.00 1.82
3256 3569 6.417191 TTTTTGGCTATAAGTGTGTCGATC 57.583 37.500 0.00 0.00 0.00 3.69
3257 3570 5.339008 TTTGGCTATAAGTGTGTCGATCT 57.661 39.130 0.00 0.00 0.00 2.75
3259 3572 5.690997 TGGCTATAAGTGTGTCGATCTAG 57.309 43.478 0.00 0.00 0.00 2.43
3260 3573 4.023107 TGGCTATAAGTGTGTCGATCTAGC 60.023 45.833 0.00 0.00 0.00 3.42
3262 3575 5.150683 GCTATAAGTGTGTCGATCTAGCAG 58.849 45.833 0.00 0.00 32.58 4.24
3264 3577 3.944055 AAGTGTGTCGATCTAGCAGTT 57.056 42.857 0.00 0.00 0.00 3.16
3265 3578 3.944055 AGTGTGTCGATCTAGCAGTTT 57.056 42.857 0.00 0.00 0.00 2.66
3266 3579 4.258702 AGTGTGTCGATCTAGCAGTTTT 57.741 40.909 0.00 0.00 0.00 2.43
3267 3580 4.632153 AGTGTGTCGATCTAGCAGTTTTT 58.368 39.130 0.00 0.00 0.00 1.94
3299 3612 1.013596 TGTGAAACAGAACACAGGCG 58.986 50.000 0.00 0.00 45.67 5.52
3300 3613 0.317020 GTGAAACAGAACACAGGCGC 60.317 55.000 0.00 0.00 37.05 6.53
3301 3614 0.463654 TGAAACAGAACACAGGCGCT 60.464 50.000 7.64 0.00 0.00 5.92
3302 3615 0.663153 GAAACAGAACACAGGCGCTT 59.337 50.000 7.64 0.00 0.00 4.68
3303 3616 1.871039 GAAACAGAACACAGGCGCTTA 59.129 47.619 7.64 0.00 0.00 3.09
3304 3617 1.226746 AACAGAACACAGGCGCTTAC 58.773 50.000 7.64 0.00 0.00 2.34
3305 3618 0.105964 ACAGAACACAGGCGCTTACA 59.894 50.000 7.64 0.00 0.00 2.41
3306 3619 1.270839 ACAGAACACAGGCGCTTACAT 60.271 47.619 7.64 0.00 0.00 2.29
3307 3620 1.394917 CAGAACACAGGCGCTTACATC 59.605 52.381 7.64 0.00 0.00 3.06
3308 3621 0.370273 GAACACAGGCGCTTACATCG 59.630 55.000 7.64 0.00 0.00 3.84
3309 3622 0.320421 AACACAGGCGCTTACATCGT 60.320 50.000 7.64 0.00 0.00 3.73
3310 3623 0.320421 ACACAGGCGCTTACATCGTT 60.320 50.000 7.64 0.00 0.00 3.85
3311 3624 0.796312 CACAGGCGCTTACATCGTTT 59.204 50.000 7.64 0.00 0.00 3.60
3312 3625 1.196808 CACAGGCGCTTACATCGTTTT 59.803 47.619 7.64 0.00 0.00 2.43
3313 3626 1.877443 ACAGGCGCTTACATCGTTTTT 59.123 42.857 7.64 0.00 0.00 1.94
3334 3647 2.093972 TTTCACGCGTTTGTAACTGC 57.906 45.000 10.22 0.00 0.00 4.40
3335 3648 0.305313 TTCACGCGTTTGTAACTGCC 59.695 50.000 10.22 0.00 0.00 4.85
3336 3649 1.438059 CACGCGTTTGTAACTGCCG 60.438 57.895 10.22 0.00 0.00 5.69
3337 3650 1.592131 ACGCGTTTGTAACTGCCGA 60.592 52.632 5.58 0.00 0.00 5.54
3338 3651 0.947180 ACGCGTTTGTAACTGCCGAT 60.947 50.000 5.58 0.00 0.00 4.18
3339 3652 0.247145 CGCGTTTGTAACTGCCGATC 60.247 55.000 0.00 0.00 0.00 3.69
3340 3653 0.247145 GCGTTTGTAACTGCCGATCG 60.247 55.000 8.51 8.51 0.00 3.69
3341 3654 1.342555 CGTTTGTAACTGCCGATCGA 58.657 50.000 18.66 0.00 0.00 3.59
3342 3655 1.722464 CGTTTGTAACTGCCGATCGAA 59.278 47.619 18.66 3.24 0.00 3.71
3343 3656 2.156117 CGTTTGTAACTGCCGATCGAAA 59.844 45.455 18.66 3.33 0.00 3.46
3344 3657 3.181524 CGTTTGTAACTGCCGATCGAAAT 60.182 43.478 18.66 0.32 0.00 2.17
3345 3658 4.031991 CGTTTGTAACTGCCGATCGAAATA 59.968 41.667 18.66 0.00 0.00 1.40
3346 3659 5.276678 CGTTTGTAACTGCCGATCGAAATAT 60.277 40.000 18.66 2.23 0.00 1.28
3347 3660 5.651172 TTGTAACTGCCGATCGAAATATG 57.349 39.130 18.66 0.00 0.00 1.78
3348 3661 4.689071 TGTAACTGCCGATCGAAATATGT 58.311 39.130 18.66 3.65 0.00 2.29
3349 3662 5.834169 TGTAACTGCCGATCGAAATATGTA 58.166 37.500 18.66 0.00 0.00 2.29
3350 3663 5.918576 TGTAACTGCCGATCGAAATATGTAG 59.081 40.000 18.66 9.88 0.00 2.74
3351 3664 3.318017 ACTGCCGATCGAAATATGTAGC 58.682 45.455 18.66 8.49 0.00 3.58
3352 3665 3.005897 ACTGCCGATCGAAATATGTAGCT 59.994 43.478 18.66 0.00 0.00 3.32
3353 3666 4.217767 ACTGCCGATCGAAATATGTAGCTA 59.782 41.667 18.66 0.00 0.00 3.32
3354 3667 4.733850 TGCCGATCGAAATATGTAGCTAG 58.266 43.478 18.66 0.00 0.00 3.42
3355 3668 4.217767 TGCCGATCGAAATATGTAGCTAGT 59.782 41.667 18.66 0.00 0.00 2.57
3356 3669 5.162075 GCCGATCGAAATATGTAGCTAGTT 58.838 41.667 18.66 0.00 0.00 2.24
3357 3670 5.634020 GCCGATCGAAATATGTAGCTAGTTT 59.366 40.000 18.66 0.00 0.00 2.66
3358 3671 6.805271 GCCGATCGAAATATGTAGCTAGTTTA 59.195 38.462 18.66 0.00 0.00 2.01
3359 3672 7.327761 GCCGATCGAAATATGTAGCTAGTTTAA 59.672 37.037 18.66 0.00 0.00 1.52
3360 3673 9.188588 CCGATCGAAATATGTAGCTAGTTTAAA 57.811 33.333 18.66 0.00 0.00 1.52
3372 3685 9.116067 TGTAGCTAGTTTAAAATCAAACACTGT 57.884 29.630 0.00 0.00 40.22 3.55
3373 3686 9.946165 GTAGCTAGTTTAAAATCAAACACTGTT 57.054 29.630 0.00 0.00 40.22 3.16
3384 3697 8.419076 AAATCAAACACTGTTAAAATGTCCAC 57.581 30.769 0.00 0.00 0.00 4.02
3385 3698 5.574082 TCAAACACTGTTAAAATGTCCACG 58.426 37.500 0.00 0.00 0.00 4.94
3386 3699 5.124138 TCAAACACTGTTAAAATGTCCACGT 59.876 36.000 0.00 0.00 0.00 4.49
3387 3700 6.315642 TCAAACACTGTTAAAATGTCCACGTA 59.684 34.615 0.00 0.00 0.00 3.57
3388 3701 6.680874 AACACTGTTAAAATGTCCACGTAA 57.319 33.333 0.00 0.00 0.00 3.18
3389 3702 6.870971 ACACTGTTAAAATGTCCACGTAAT 57.129 33.333 0.00 0.00 0.00 1.89
3390 3703 6.894828 ACACTGTTAAAATGTCCACGTAATC 58.105 36.000 0.00 0.00 0.00 1.75
3391 3704 6.013085 CACTGTTAAAATGTCCACGTAATCG 58.987 40.000 0.00 0.00 43.34 3.34
3440 3756 8.592105 TTAGCTCAAATTCATTTGTTTCTTGG 57.408 30.769 11.21 0.00 45.49 3.61
3443 3759 6.073602 GCTCAAATTCATTTGTTTCTTGGTCC 60.074 38.462 11.21 0.00 45.49 4.46
3446 3762 6.729690 AATTCATTTGTTTCTTGGTCCTCA 57.270 33.333 0.00 0.00 0.00 3.86
3447 3763 6.923199 ATTCATTTGTTTCTTGGTCCTCAT 57.077 33.333 0.00 0.00 0.00 2.90
3452 3769 5.825593 TTGTTTCTTGGTCCTCATCTACT 57.174 39.130 0.00 0.00 0.00 2.57
3476 3793 0.312416 CGCCGACATTTTCACCCAAA 59.688 50.000 0.00 0.00 0.00 3.28
3477 3794 1.067915 CGCCGACATTTTCACCCAAAT 60.068 47.619 0.00 0.00 0.00 2.32
3479 3796 3.181491 CGCCGACATTTTCACCCAAATAT 60.181 43.478 0.00 0.00 0.00 1.28
3480 3797 4.359706 GCCGACATTTTCACCCAAATATC 58.640 43.478 0.00 0.00 0.00 1.63
3481 3798 4.142271 GCCGACATTTTCACCCAAATATCA 60.142 41.667 0.00 0.00 0.00 2.15
3482 3799 5.339990 CCGACATTTTCACCCAAATATCAC 58.660 41.667 0.00 0.00 0.00 3.06
3483 3800 5.125417 CCGACATTTTCACCCAAATATCACT 59.875 40.000 0.00 0.00 0.00 3.41
3484 3801 6.317642 CCGACATTTTCACCCAAATATCACTA 59.682 38.462 0.00 0.00 0.00 2.74
3485 3802 7.148154 CCGACATTTTCACCCAAATATCACTAA 60.148 37.037 0.00 0.00 0.00 2.24
3486 3803 7.696453 CGACATTTTCACCCAAATATCACTAAC 59.304 37.037 0.00 0.00 0.00 2.34
3489 3806 9.874205 CATTTTCACCCAAATATCACTAACAAT 57.126 29.630 0.00 0.00 0.00 2.71
3490 3807 9.874205 ATTTTCACCCAAATATCACTAACAATG 57.126 29.630 0.00 0.00 0.00 2.82
3491 3808 7.403312 TTCACCCAAATATCACTAACAATGG 57.597 36.000 0.00 0.00 0.00 3.16
3492 3809 5.359576 TCACCCAAATATCACTAACAATGGC 59.640 40.000 0.00 0.00 0.00 4.40
3493 3810 5.360714 CACCCAAATATCACTAACAATGGCT 59.639 40.000 0.00 0.00 0.00 4.75
3494 3811 5.594317 ACCCAAATATCACTAACAATGGCTC 59.406 40.000 0.00 0.00 0.00 4.70
3495 3812 5.277974 CCCAAATATCACTAACAATGGCTCG 60.278 44.000 0.00 0.00 0.00 5.03
3498 3815 6.604735 AATATCACTAACAATGGCTCGTTC 57.395 37.500 0.00 0.00 0.00 3.95
3500 3817 3.325870 TCACTAACAATGGCTCGTTCTG 58.674 45.455 0.00 0.00 0.00 3.02
3501 3818 2.416547 CACTAACAATGGCTCGTTCTGG 59.583 50.000 0.00 0.00 0.00 3.86
3502 3819 1.398390 CTAACAATGGCTCGTTCTGGC 59.602 52.381 0.00 0.00 0.00 4.85
3503 3820 0.537143 AACAATGGCTCGTTCTGGCA 60.537 50.000 0.00 0.00 43.90 4.92
3504 3821 0.537143 ACAATGGCTCGTTCTGGCAA 60.537 50.000 0.00 0.00 43.05 4.52
3506 3823 2.016318 CAATGGCTCGTTCTGGCAATA 58.984 47.619 0.00 0.00 43.05 1.90
3507 3824 1.959042 ATGGCTCGTTCTGGCAATAG 58.041 50.000 0.00 0.00 43.05 1.73
3508 3825 0.744414 TGGCTCGTTCTGGCAATAGC 60.744 55.000 0.00 0.00 37.05 2.97
3509 3826 0.744414 GGCTCGTTCTGGCAATAGCA 60.744 55.000 0.00 0.00 44.61 3.49
3510 3827 0.654683 GCTCGTTCTGGCAATAGCAG 59.345 55.000 0.00 0.00 44.61 4.24
3511 3828 2.009042 GCTCGTTCTGGCAATAGCAGT 61.009 52.381 0.00 0.00 44.61 4.40
3514 3831 2.496070 TCGTTCTGGCAATAGCAGTAGT 59.504 45.455 0.00 0.00 44.61 2.73
3515 3832 2.860735 CGTTCTGGCAATAGCAGTAGTC 59.139 50.000 0.00 0.00 44.61 2.59
3517 3834 4.446371 GTTCTGGCAATAGCAGTAGTCAT 58.554 43.478 0.00 0.00 44.61 3.06
3518 3835 4.760530 TCTGGCAATAGCAGTAGTCATT 57.239 40.909 0.00 0.00 44.61 2.57
3519 3836 5.102953 TCTGGCAATAGCAGTAGTCATTT 57.897 39.130 0.00 0.00 44.61 2.32
3520 3837 4.877823 TCTGGCAATAGCAGTAGTCATTTG 59.122 41.667 0.00 0.00 44.61 2.32
3521 3838 4.842574 TGGCAATAGCAGTAGTCATTTGA 58.157 39.130 0.00 0.00 44.61 2.69
3522 3839 5.439721 TGGCAATAGCAGTAGTCATTTGAT 58.560 37.500 0.00 0.00 44.61 2.57
3524 3841 5.278169 GGCAATAGCAGTAGTCATTTGATGG 60.278 44.000 0.00 0.00 44.61 3.51
3525 3842 5.297776 GCAATAGCAGTAGTCATTTGATGGT 59.702 40.000 0.00 0.00 41.58 3.55
3527 3844 4.833478 AGCAGTAGTCATTTGATGGTCT 57.167 40.909 0.00 0.00 0.00 3.85
3528 3845 4.511527 AGCAGTAGTCATTTGATGGTCTG 58.488 43.478 0.00 0.00 0.00 3.51
3529 3846 3.624861 GCAGTAGTCATTTGATGGTCTGG 59.375 47.826 0.00 0.00 0.00 3.86
3530 3847 4.623886 GCAGTAGTCATTTGATGGTCTGGA 60.624 45.833 0.00 0.00 0.00 3.86
3531 3848 5.491070 CAGTAGTCATTTGATGGTCTGGAA 58.509 41.667 0.00 0.00 0.00 3.53
3532 3849 5.939883 CAGTAGTCATTTGATGGTCTGGAAA 59.060 40.000 0.00 0.00 0.00 3.13
3533 3850 6.600822 CAGTAGTCATTTGATGGTCTGGAAAT 59.399 38.462 0.00 0.00 0.00 2.17
3534 3851 7.770433 CAGTAGTCATTTGATGGTCTGGAAATA 59.230 37.037 0.00 0.00 0.00 1.40
3537 3854 7.580910 AGTCATTTGATGGTCTGGAAATAGAT 58.419 34.615 0.00 0.00 0.00 1.98
3539 3856 7.284034 GTCATTTGATGGTCTGGAAATAGATGT 59.716 37.037 0.00 0.00 0.00 3.06
3541 3858 9.123902 CATTTGATGGTCTGGAAATAGATGTAA 57.876 33.333 0.00 0.00 0.00 2.41
3580 4428 6.128553 TGAGATGCTTTGTACTTCGAATGAAC 60.129 38.462 0.00 0.00 0.00 3.18
3586 4434 8.227791 TGCTTTGTACTTCGAATGAACTTATTC 58.772 33.333 0.00 0.00 34.48 1.75
3602 4450 9.923143 TGAACTTATTCGAACTTTTAGATCTGA 57.077 29.630 5.18 0.00 37.69 3.27
3604 4452 8.705048 ACTTATTCGAACTTTTAGATCTGACC 57.295 34.615 5.18 0.00 0.00 4.02
3605 4453 7.764901 ACTTATTCGAACTTTTAGATCTGACCC 59.235 37.037 5.18 0.00 0.00 4.46
3606 4454 5.740290 TTCGAACTTTTAGATCTGACCCT 57.260 39.130 5.18 0.00 0.00 4.34
3607 4455 5.740290 TCGAACTTTTAGATCTGACCCTT 57.260 39.130 5.18 0.00 0.00 3.95
3608 4456 6.110411 TCGAACTTTTAGATCTGACCCTTT 57.890 37.500 5.18 0.00 0.00 3.11
3609 4457 6.164176 TCGAACTTTTAGATCTGACCCTTTC 58.836 40.000 5.18 0.63 0.00 2.62
3610 4458 5.351740 CGAACTTTTAGATCTGACCCTTTCC 59.648 44.000 5.18 0.00 0.00 3.13
3611 4459 4.833390 ACTTTTAGATCTGACCCTTTCCG 58.167 43.478 5.18 0.00 0.00 4.30
3612 4460 3.906720 TTTAGATCTGACCCTTTCCGG 57.093 47.619 5.18 0.00 0.00 5.14
3681 4529 4.742167 CACTGTTGTGAGCGATAAGATAGG 59.258 45.833 0.00 0.00 46.55 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.017442 GTGTATCTGAGGGAAAAAGGCC 58.983 50.000 0.00 0.00 0.00 5.19
1 2 3.017442 GGTGTATCTGAGGGAAAAAGGC 58.983 50.000 0.00 0.00 0.00 4.35
9 10 3.981071 TTGTCTTGGTGTATCTGAGGG 57.019 47.619 0.00 0.00 0.00 4.30
22 23 7.277539 CCTGAGTAGAGCTCTAATTTTGTCTTG 59.722 40.741 24.85 11.81 44.41 3.02
100 101 2.284952 TCACATATTCAAGCGCATGTCG 59.715 45.455 11.47 4.99 42.12 4.35
120 121 6.100004 CGTGGACCCATATGAGTACATTATC 58.900 44.000 5.47 0.00 37.87 1.75
121 122 5.046591 CCGTGGACCCATATGAGTACATTAT 60.047 44.000 5.47 0.00 37.87 1.28
122 123 4.282449 CCGTGGACCCATATGAGTACATTA 59.718 45.833 5.47 0.00 37.87 1.90
123 124 3.071023 CCGTGGACCCATATGAGTACATT 59.929 47.826 5.47 0.00 37.87 2.71
124 125 2.632996 CCGTGGACCCATATGAGTACAT 59.367 50.000 5.47 0.00 40.16 2.29
125 126 2.036387 CCGTGGACCCATATGAGTACA 58.964 52.381 3.65 0.02 0.00 2.90
126 127 2.037144 ACCGTGGACCCATATGAGTAC 58.963 52.381 3.65 0.00 0.00 2.73
127 128 2.036387 CACCGTGGACCCATATGAGTA 58.964 52.381 3.65 0.00 0.00 2.59
163 164 7.707464 CACAGCATTCTTTAAATATCAATGCCA 59.293 33.333 20.04 0.00 46.98 4.92
168 169 9.791820 CATGACACAGCATTCTTTAAATATCAA 57.208 29.630 0.00 0.00 0.00 2.57
173 177 8.746530 AGAATCATGACACAGCATTCTTTAAAT 58.253 29.630 0.00 0.00 31.11 1.40
200 205 9.807649 TTTGTAGAATAACCGATACTTTCTACC 57.192 33.333 14.93 2.91 43.97 3.18
262 269 9.284968 CGGAGGGAGTATATTGTGAATTTTTAT 57.715 33.333 0.00 0.00 0.00 1.40
268 275 5.888982 AACGGAGGGAGTATATTGTGAAT 57.111 39.130 0.00 0.00 0.00 2.57
270 277 5.687166 AAAACGGAGGGAGTATATTGTGA 57.313 39.130 0.00 0.00 0.00 3.58
271 278 8.446599 AATAAAAACGGAGGGAGTATATTGTG 57.553 34.615 0.00 0.00 0.00 3.33
276 283 9.822185 GAAGTAAATAAAAACGGAGGGAGTATA 57.178 33.333 0.00 0.00 0.00 1.47
277 284 7.493645 CGAAGTAAATAAAAACGGAGGGAGTAT 59.506 37.037 0.00 0.00 0.00 2.12
278 285 6.813152 CGAAGTAAATAAAAACGGAGGGAGTA 59.187 38.462 0.00 0.00 0.00 2.59
279 286 5.640783 CGAAGTAAATAAAAACGGAGGGAGT 59.359 40.000 0.00 0.00 0.00 3.85
280 287 5.446875 GCGAAGTAAATAAAAACGGAGGGAG 60.447 44.000 0.00 0.00 0.00 4.30
281 288 4.392754 GCGAAGTAAATAAAAACGGAGGGA 59.607 41.667 0.00 0.00 0.00 4.20
282 289 4.154556 TGCGAAGTAAATAAAAACGGAGGG 59.845 41.667 0.00 0.00 0.00 4.30
283 290 5.285798 TGCGAAGTAAATAAAAACGGAGG 57.714 39.130 0.00 0.00 0.00 4.30
286 293 8.889000 GCTAATATGCGAAGTAAATAAAAACGG 58.111 33.333 0.00 0.00 0.00 4.44
287 294 9.646336 AGCTAATATGCGAAGTAAATAAAAACG 57.354 29.630 0.00 0.00 38.13 3.60
291 298 9.944663 CCAAAGCTAATATGCGAAGTAAATAAA 57.055 29.630 0.00 0.00 38.13 1.40
292 299 9.116067 ACCAAAGCTAATATGCGAAGTAAATAA 57.884 29.630 0.00 0.00 38.13 1.40
293 300 8.671384 ACCAAAGCTAATATGCGAAGTAAATA 57.329 30.769 0.00 0.00 38.13 1.40
294 301 7.282224 TGACCAAAGCTAATATGCGAAGTAAAT 59.718 33.333 0.00 0.00 38.13 1.40
295 302 6.596106 TGACCAAAGCTAATATGCGAAGTAAA 59.404 34.615 0.00 0.00 38.13 2.01
296 303 6.110033 TGACCAAAGCTAATATGCGAAGTAA 58.890 36.000 0.00 0.00 38.13 2.24
297 304 5.666462 TGACCAAAGCTAATATGCGAAGTA 58.334 37.500 0.00 0.00 38.13 2.24
298 305 4.513442 TGACCAAAGCTAATATGCGAAGT 58.487 39.130 0.00 0.00 38.13 3.01
299 306 5.484173 TTGACCAAAGCTAATATGCGAAG 57.516 39.130 0.00 0.00 38.13 3.79
300 307 5.879237 CTTTGACCAAAGCTAATATGCGAA 58.121 37.500 9.25 0.00 40.94 4.70
301 308 5.484173 CTTTGACCAAAGCTAATATGCGA 57.516 39.130 9.25 0.00 40.94 5.10
390 397 9.832445 AGTACGTTCAATAATGAATCTAATGGT 57.168 29.630 0.00 0.00 46.67 3.55
396 403 8.808529 CGAGAAAGTACGTTCAATAATGAATCT 58.191 33.333 21.18 0.00 46.67 2.40
397 404 8.592998 ACGAGAAAGTACGTTCAATAATGAATC 58.407 33.333 21.18 7.65 46.67 2.52
398 405 8.475331 ACGAGAAAGTACGTTCAATAATGAAT 57.525 30.769 21.18 0.00 46.67 2.57
399 406 7.595875 TGACGAGAAAGTACGTTCAATAATGAA 59.404 33.333 21.18 0.00 43.18 2.57
400 407 7.085746 TGACGAGAAAGTACGTTCAATAATGA 58.914 34.615 21.18 0.00 42.74 2.57
401 408 7.273188 TGACGAGAAAGTACGTTCAATAATG 57.727 36.000 21.18 8.19 42.74 1.90
402 409 9.745880 ATATGACGAGAAAGTACGTTCAATAAT 57.254 29.630 21.18 11.31 42.74 1.28
404 411 9.874215 CTATATGACGAGAAAGTACGTTCAATA 57.126 33.333 21.18 11.64 42.74 1.90
405 412 8.618677 TCTATATGACGAGAAAGTACGTTCAAT 58.381 33.333 21.18 7.86 42.74 2.57
406 413 7.977904 TCTATATGACGAGAAAGTACGTTCAA 58.022 34.615 21.18 4.40 42.74 2.69
407 414 7.543947 TCTATATGACGAGAAAGTACGTTCA 57.456 36.000 21.18 3.73 42.74 3.18
408 415 9.448294 AAATCTATATGACGAGAAAGTACGTTC 57.552 33.333 12.95 12.95 42.74 3.95
409 416 9.798994 AAAATCTATATGACGAGAAAGTACGTT 57.201 29.630 0.00 0.00 42.74 3.99
410 417 9.798994 AAAAATCTATATGACGAGAAAGTACGT 57.201 29.630 0.00 0.00 45.32 3.57
491 498 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
492 499 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
493 500 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
507 514 8.621286 CCTCCGTTTTTATTTACTCTGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
508 515 7.228706 CCCTCCGTTTTTATTTACTCTGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
509 516 6.540914 CCCTCCGTTTTTATTTACTCTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
510 517 5.357032 CCCTCCGTTTTTATTTACTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
511 518 4.698304 CCCTCCGTTTTTATTTACTCTGCA 59.302 41.667 0.00 0.00 0.00 4.41
512 519 4.939439 TCCCTCCGTTTTTATTTACTCTGC 59.061 41.667 0.00 0.00 0.00 4.26
513 520 6.171213 ACTCCCTCCGTTTTTATTTACTCTG 58.829 40.000 0.00 0.00 0.00 3.35
514 521 6.370186 ACTCCCTCCGTTTTTATTTACTCT 57.630 37.500 0.00 0.00 0.00 3.24
515 522 7.326454 AGTACTCCCTCCGTTTTTATTTACTC 58.674 38.462 0.00 0.00 0.00 2.59
516 523 7.250032 AGTACTCCCTCCGTTTTTATTTACT 57.750 36.000 0.00 0.00 0.00 2.24
517 524 7.388776 ACAAGTACTCCCTCCGTTTTTATTTAC 59.611 37.037 0.00 0.00 0.00 2.01
518 525 7.452562 ACAAGTACTCCCTCCGTTTTTATTTA 58.547 34.615 0.00 0.00 0.00 1.40
519 526 6.301486 ACAAGTACTCCCTCCGTTTTTATTT 58.699 36.000 0.00 0.00 0.00 1.40
520 527 5.872963 ACAAGTACTCCCTCCGTTTTTATT 58.127 37.500 0.00 0.00 0.00 1.40
521 528 5.494390 ACAAGTACTCCCTCCGTTTTTAT 57.506 39.130 0.00 0.00 0.00 1.40
522 529 4.961438 ACAAGTACTCCCTCCGTTTTTA 57.039 40.909 0.00 0.00 0.00 1.52
523 530 3.851458 ACAAGTACTCCCTCCGTTTTT 57.149 42.857 0.00 0.00 0.00 1.94
524 531 3.851458 AACAAGTACTCCCTCCGTTTT 57.149 42.857 0.00 0.00 0.00 2.43
525 532 3.899980 ACTAACAAGTACTCCCTCCGTTT 59.100 43.478 0.00 0.00 0.00 3.60
526 533 3.504375 ACTAACAAGTACTCCCTCCGTT 58.496 45.455 0.00 0.00 0.00 4.44
527 534 3.087781 GACTAACAAGTACTCCCTCCGT 58.912 50.000 0.00 0.00 0.00 4.69
528 535 3.128938 CAGACTAACAAGTACTCCCTCCG 59.871 52.174 0.00 0.00 0.00 4.63
529 536 4.082136 CACAGACTAACAAGTACTCCCTCC 60.082 50.000 0.00 0.00 0.00 4.30
530 537 4.765856 TCACAGACTAACAAGTACTCCCTC 59.234 45.833 0.00 0.00 0.00 4.30
531 538 4.737578 TCACAGACTAACAAGTACTCCCT 58.262 43.478 0.00 0.00 0.00 4.20
532 539 5.464030 TTCACAGACTAACAAGTACTCCC 57.536 43.478 0.00 0.00 0.00 4.30
533 540 7.873505 AGAAATTCACAGACTAACAAGTACTCC 59.126 37.037 0.00 0.00 0.00 3.85
534 541 8.819643 AGAAATTCACAGACTAACAAGTACTC 57.180 34.615 0.00 0.00 0.00 2.59
704 711 1.972795 ACATGCCTTTTGCTGGTTCAT 59.027 42.857 0.00 0.00 42.00 2.57
750 757 4.570772 TCTTGAACCAGTTCGTGAAGAAAG 59.429 41.667 6.08 2.94 42.28 2.62
759 766 6.241207 ACAATGTATTCTTGAACCAGTTCG 57.759 37.500 6.08 0.00 42.28 3.95
794 801 6.811665 GGCAAAGTTTTAGTCTTGTCTTTTGT 59.188 34.615 0.00 0.00 0.00 2.83
807 814 6.753897 CAAGTAAGCTTGGCAAAGTTTTAG 57.246 37.500 8.34 0.00 46.17 1.85
870 877 8.237267 CCAGGTTCTACAAATAAAACAGATCAC 58.763 37.037 0.00 0.00 0.00 3.06
893 900 8.795842 TTAGTGTACAAAATAATACCACCCAG 57.204 34.615 0.00 0.00 0.00 4.45
999 1006 0.320247 CATCCTCCGCACTAGCCATC 60.320 60.000 0.00 0.00 37.52 3.51
1149 1156 6.257849 GCAAATCATCACGAGGTTATAGAACA 59.742 38.462 2.17 0.00 37.29 3.18
1172 1181 2.573462 AGGCACTTCAGAGGAATAAGCA 59.427 45.455 0.00 0.00 27.25 3.91
1174 1183 4.187694 GTCAGGCACTTCAGAGGAATAAG 58.812 47.826 0.00 0.00 34.60 1.73
1175 1184 3.055094 GGTCAGGCACTTCAGAGGAATAA 60.055 47.826 0.00 0.00 34.60 1.40
1176 1185 2.501723 GGTCAGGCACTTCAGAGGAATA 59.498 50.000 0.00 0.00 34.60 1.75
1177 1186 1.280421 GGTCAGGCACTTCAGAGGAAT 59.720 52.381 0.00 0.00 34.60 3.01
1178 1187 0.687354 GGTCAGGCACTTCAGAGGAA 59.313 55.000 0.00 0.00 34.60 3.36
1179 1188 0.178921 AGGTCAGGCACTTCAGAGGA 60.179 55.000 0.00 0.00 34.60 3.71
1180 1189 0.689623 AAGGTCAGGCACTTCAGAGG 59.310 55.000 0.00 0.00 34.60 3.69
1181 1190 1.071385 ACAAGGTCAGGCACTTCAGAG 59.929 52.381 0.00 0.00 34.60 3.35
1182 1191 1.131638 ACAAGGTCAGGCACTTCAGA 58.868 50.000 0.00 0.00 34.60 3.27
1183 1192 1.605710 CAACAAGGTCAGGCACTTCAG 59.394 52.381 0.00 0.00 34.60 3.02
1184 1193 1.679139 CAACAAGGTCAGGCACTTCA 58.321 50.000 0.00 0.00 34.60 3.02
1185 1194 0.954452 CCAACAAGGTCAGGCACTTC 59.046 55.000 0.00 0.00 34.60 3.01
1186 1195 3.116091 CCAACAAGGTCAGGCACTT 57.884 52.632 0.00 0.00 34.60 3.16
1187 1196 4.907457 CCAACAAGGTCAGGCACT 57.093 55.556 0.00 0.00 43.88 4.40
1273 1283 2.837498 ACAAAGCAAAAGTTGGATGCC 58.163 42.857 5.27 0.00 40.93 4.40
1316 1326 9.952188 GTTATCAAATTTCCTATCTTAGTTGGC 57.048 33.333 0.00 0.00 0.00 4.52
1358 1368 7.755822 CAGTATAAGGTCTCAAGTACAAGTGTC 59.244 40.741 0.00 0.00 0.00 3.67
1379 1389 9.897744 CTTTGTTGTTGTTGTATTGATCAGTAT 57.102 29.630 0.83 0.00 0.00 2.12
1466 1476 1.579429 GGTGCCGGTGAACACATTC 59.421 57.895 1.90 0.00 38.57 2.67
1827 1915 1.091537 GCATACAAACCAAGCGCCTA 58.908 50.000 2.29 0.00 0.00 3.93
1854 1942 5.630680 GGTGCAAGGCAATAATATTTCGATG 59.369 40.000 0.00 0.00 41.47 3.84
1910 1998 9.577110 CTGCAAAAATGACACATATATCAGTTT 57.423 29.630 0.00 4.35 42.97 2.66
2272 2447 6.067350 AGGGATCAGCTGGAATTAGATTTTC 58.933 40.000 15.13 0.00 0.00 2.29
2329 2526 5.490139 ACGAAAGCAGGTCAATATCATTG 57.510 39.130 0.00 0.00 0.00 2.82
2337 2537 1.202245 GCACAAACGAAAGCAGGTCAA 60.202 47.619 0.00 0.00 0.00 3.18
2464 2673 3.452627 ACTGCCTACCCTAGAAATCACAG 59.547 47.826 0.00 0.00 0.00 3.66
2678 2887 2.856000 AGAGGCCACCACCAGCTT 60.856 61.111 5.01 0.00 0.00 3.74
2681 2890 0.038744 ATTTGAGAGGCCACCACCAG 59.961 55.000 5.01 0.00 0.00 4.00
2733 2942 6.203723 GCTACCACTGGAAATGAGTATTCATC 59.796 42.308 0.71 0.00 43.20 2.92
2734 2943 6.058183 GCTACCACTGGAAATGAGTATTCAT 58.942 40.000 0.71 0.00 45.92 2.57
2735 2944 5.045942 TGCTACCACTGGAAATGAGTATTCA 60.046 40.000 0.71 0.00 37.81 2.57
2736 2945 5.428253 TGCTACCACTGGAAATGAGTATTC 58.572 41.667 0.71 0.00 0.00 1.75
2737 2946 5.435686 TGCTACCACTGGAAATGAGTATT 57.564 39.130 0.71 0.00 0.00 1.89
2738 2947 5.130975 TGATGCTACCACTGGAAATGAGTAT 59.869 40.000 0.71 0.00 0.00 2.12
2743 2952 5.125356 TGTATGATGCTACCACTGGAAATG 58.875 41.667 0.71 0.00 0.00 2.32
2761 2974 5.533528 TCAGCCATCCAGATCATTTTGTATG 59.466 40.000 0.00 0.00 0.00 2.39
2765 2978 4.994907 TTCAGCCATCCAGATCATTTTG 57.005 40.909 0.00 0.00 0.00 2.44
2766 2979 6.555463 AATTTCAGCCATCCAGATCATTTT 57.445 33.333 0.00 0.00 0.00 1.82
2775 2988 3.429492 TGCACTAAATTTCAGCCATCCA 58.571 40.909 0.00 0.00 0.00 3.41
2794 3007 3.129813 TGAGAGGTGCATTGAAATCATGC 59.870 43.478 0.00 9.45 41.35 4.06
2795 3008 4.669318 GTGAGAGGTGCATTGAAATCATG 58.331 43.478 0.00 0.00 0.00 3.07
2796 3009 3.376234 CGTGAGAGGTGCATTGAAATCAT 59.624 43.478 0.00 0.00 0.00 2.45
2804 3018 2.045926 GGGCGTGAGAGGTGCATT 60.046 61.111 0.00 0.00 0.00 3.56
2811 3025 1.004560 TTCAAGCAGGGCGTGAGAG 60.005 57.895 12.03 0.00 46.12 3.20
2816 3030 2.113986 AAGCTTCAAGCAGGGCGT 59.886 55.556 13.10 0.00 45.56 5.68
2838 3052 5.348451 CGGTTAAAGCCAAAGAAAATCCATG 59.652 40.000 0.00 0.00 0.00 3.66
2840 3054 4.262249 CCGGTTAAAGCCAAAGAAAATCCA 60.262 41.667 0.00 0.00 0.00 3.41
2841 3055 4.021807 TCCGGTTAAAGCCAAAGAAAATCC 60.022 41.667 0.00 0.00 0.00 3.01
2848 3062 1.818674 AGCATCCGGTTAAAGCCAAAG 59.181 47.619 0.00 0.00 0.00 2.77
2852 3066 0.179137 GCAAGCATCCGGTTAAAGCC 60.179 55.000 0.00 0.00 0.00 4.35
2853 3067 0.523335 CGCAAGCATCCGGTTAAAGC 60.523 55.000 0.00 0.00 0.00 3.51
2854 3068 1.083489 TCGCAAGCATCCGGTTAAAG 58.917 50.000 0.00 0.00 37.18 1.85
2855 3069 1.400142 CATCGCAAGCATCCGGTTAAA 59.600 47.619 0.00 0.00 37.18 1.52
2856 3070 1.013596 CATCGCAAGCATCCGGTTAA 58.986 50.000 0.00 0.00 37.18 2.01
2875 3094 0.179045 ACATCCTAGACCGCCAATGC 60.179 55.000 0.00 0.00 0.00 3.56
2877 3096 2.628657 GAGTACATCCTAGACCGCCAAT 59.371 50.000 0.00 0.00 0.00 3.16
2894 3113 5.269991 ACTACAGCTTGGTTCATAGGAGTA 58.730 41.667 0.00 0.00 0.00 2.59
2896 3115 4.744795 ACTACAGCTTGGTTCATAGGAG 57.255 45.455 0.00 0.00 0.00 3.69
2897 3116 5.020795 TGTACTACAGCTTGGTTCATAGGA 58.979 41.667 0.00 0.00 0.00 2.94
2898 3117 5.339008 TGTACTACAGCTTGGTTCATAGG 57.661 43.478 0.00 0.00 0.00 2.57
2899 3118 5.235186 GCATGTACTACAGCTTGGTTCATAG 59.765 44.000 0.00 0.00 0.00 2.23
2900 3119 5.104941 AGCATGTACTACAGCTTGGTTCATA 60.105 40.000 0.00 0.00 31.73 2.15
2901 3120 3.941483 GCATGTACTACAGCTTGGTTCAT 59.059 43.478 0.00 0.00 0.00 2.57
2903 3122 3.372206 CAGCATGTACTACAGCTTGGTTC 59.628 47.826 9.26 0.00 32.84 3.62
2905 3124 2.936993 GCAGCATGTACTACAGCTTGGT 60.937 50.000 9.26 0.52 39.31 3.67
2906 3125 1.667724 GCAGCATGTACTACAGCTTGG 59.332 52.381 9.26 3.62 39.31 3.61
2907 3126 1.667724 GGCAGCATGTACTACAGCTTG 59.332 52.381 9.26 7.48 39.31 4.01
2908 3127 1.556911 AGGCAGCATGTACTACAGCTT 59.443 47.619 9.26 0.00 39.31 3.74
2909 3128 1.134580 CAGGCAGCATGTACTACAGCT 60.135 52.381 0.00 7.11 39.31 4.24
2910 3129 1.293924 CAGGCAGCATGTACTACAGC 58.706 55.000 0.00 0.00 39.31 4.40
2911 3130 1.293924 GCAGGCAGCATGTACTACAG 58.706 55.000 9.17 0.00 44.79 2.74
2912 3131 3.458872 GCAGGCAGCATGTACTACA 57.541 52.632 9.17 0.00 44.79 2.74
2922 3141 0.393537 ACATACAGAAGGCAGGCAGC 60.394 55.000 0.00 0.00 44.65 5.25
2923 3142 2.484417 CCTACATACAGAAGGCAGGCAG 60.484 54.545 0.00 0.00 0.00 4.85
2924 3143 1.486310 CCTACATACAGAAGGCAGGCA 59.514 52.381 0.00 0.00 0.00 4.75
2925 3144 2.246719 CCTACATACAGAAGGCAGGC 57.753 55.000 0.00 0.00 0.00 4.85
2935 3154 2.301583 TGCACTTCACAGCCTACATACA 59.698 45.455 0.00 0.00 0.00 2.29
2941 3163 2.638480 AACTTGCACTTCACAGCCTA 57.362 45.000 0.00 0.00 0.00 3.93
2942 3164 1.767759 AAACTTGCACTTCACAGCCT 58.232 45.000 0.00 0.00 0.00 4.58
2953 3175 7.382898 GGGATAAAAACTTCCATAAACTTGCA 58.617 34.615 0.00 0.00 33.43 4.08
2954 3176 6.816640 GGGGATAAAAACTTCCATAAACTTGC 59.183 38.462 0.00 0.00 33.43 4.01
2955 3177 7.902087 TGGGGATAAAAACTTCCATAAACTTG 58.098 34.615 0.00 0.00 33.43 3.16
2958 3180 9.733556 ATTTTGGGGATAAAAACTTCCATAAAC 57.266 29.630 0.00 0.00 33.67 2.01
2963 3185 7.236640 AGCTTATTTTGGGGATAAAAACTTCCA 59.763 33.333 0.00 0.00 33.67 3.53
2964 3186 7.549134 CAGCTTATTTTGGGGATAAAAACTTCC 59.451 37.037 0.00 0.00 33.67 3.46
2965 3187 8.311109 TCAGCTTATTTTGGGGATAAAAACTTC 58.689 33.333 0.00 0.00 33.67 3.01
2966 3188 8.201242 TCAGCTTATTTTGGGGATAAAAACTT 57.799 30.769 0.00 0.00 33.67 2.66
2967 3189 7.790782 TCAGCTTATTTTGGGGATAAAAACT 57.209 32.000 0.00 0.00 33.67 2.66
2968 3190 8.094548 ACTTCAGCTTATTTTGGGGATAAAAAC 58.905 33.333 0.00 0.00 33.67 2.43
2974 3287 6.686484 AAAACTTCAGCTTATTTTGGGGAT 57.314 33.333 0.00 0.00 0.00 3.85
2976 3289 7.931407 ACTTAAAAACTTCAGCTTATTTTGGGG 59.069 33.333 0.00 0.00 0.00 4.96
3001 3314 8.607459 CACTTCCAACTGTAAAGATATCATCAC 58.393 37.037 5.32 0.00 0.00 3.06
3005 3318 6.472016 TGCACTTCCAACTGTAAAGATATCA 58.528 36.000 5.32 0.00 0.00 2.15
3006 3319 6.985188 TGCACTTCCAACTGTAAAGATATC 57.015 37.500 0.00 0.00 0.00 1.63
3007 3320 6.942576 ACTTGCACTTCCAACTGTAAAGATAT 59.057 34.615 0.00 0.00 0.00 1.63
3009 3322 5.133221 ACTTGCACTTCCAACTGTAAAGAT 58.867 37.500 0.00 0.00 0.00 2.40
3010 3323 4.523083 ACTTGCACTTCCAACTGTAAAGA 58.477 39.130 0.00 0.00 0.00 2.52
3011 3324 4.900635 ACTTGCACTTCCAACTGTAAAG 57.099 40.909 0.00 0.00 0.00 1.85
3014 3327 3.879998 TGAACTTGCACTTCCAACTGTA 58.120 40.909 0.00 0.00 0.00 2.74
3015 3328 2.722094 TGAACTTGCACTTCCAACTGT 58.278 42.857 0.00 0.00 0.00 3.55
3017 3330 3.290710 ACATGAACTTGCACTTCCAACT 58.709 40.909 0.00 0.00 0.00 3.16
3018 3331 3.715628 ACATGAACTTGCACTTCCAAC 57.284 42.857 0.00 0.00 0.00 3.77
3021 3334 3.189287 CAGGTACATGAACTTGCACTTCC 59.811 47.826 0.00 0.00 0.00 3.46
3022 3335 4.410492 CAGGTACATGAACTTGCACTTC 57.590 45.455 0.00 0.00 0.00 3.01
3028 3341 4.867047 CAGTAGAGCAGGTACATGAACTTG 59.133 45.833 12.53 2.35 0.00 3.16
3029 3342 4.772624 TCAGTAGAGCAGGTACATGAACTT 59.227 41.667 12.53 0.00 0.00 2.66
3030 3343 4.344978 TCAGTAGAGCAGGTACATGAACT 58.655 43.478 12.53 11.32 0.00 3.01
3031 3344 4.720649 TCAGTAGAGCAGGTACATGAAC 57.279 45.455 12.53 4.04 0.00 3.18
3034 3347 5.220739 GCAATTTCAGTAGAGCAGGTACATG 60.221 44.000 2.43 2.43 0.00 3.21
3035 3348 4.878397 GCAATTTCAGTAGAGCAGGTACAT 59.122 41.667 0.00 0.00 0.00 2.29
3036 3349 4.253685 GCAATTTCAGTAGAGCAGGTACA 58.746 43.478 0.00 0.00 0.00 2.90
3037 3350 3.307242 CGCAATTTCAGTAGAGCAGGTAC 59.693 47.826 0.00 0.00 0.00 3.34
3038 3351 3.521560 CGCAATTTCAGTAGAGCAGGTA 58.478 45.455 0.00 0.00 0.00 3.08
3040 3353 1.063174 GCGCAATTTCAGTAGAGCAGG 59.937 52.381 0.30 0.00 0.00 4.85
3042 3355 1.733912 CTGCGCAATTTCAGTAGAGCA 59.266 47.619 13.05 0.00 0.00 4.26
3043 3356 1.063174 CCTGCGCAATTTCAGTAGAGC 59.937 52.381 13.05 0.00 0.00 4.09
3044 3357 2.606725 CTCCTGCGCAATTTCAGTAGAG 59.393 50.000 13.05 2.87 0.00 2.43
3045 3358 2.621338 CTCCTGCGCAATTTCAGTAGA 58.379 47.619 13.05 0.00 0.00 2.59
3047 3360 1.678728 CCCTCCTGCGCAATTTCAGTA 60.679 52.381 13.05 0.00 0.00 2.74
3048 3361 0.962356 CCCTCCTGCGCAATTTCAGT 60.962 55.000 13.05 0.00 0.00 3.41
3049 3362 0.962356 ACCCTCCTGCGCAATTTCAG 60.962 55.000 13.05 2.57 0.00 3.02
3050 3363 0.326595 TACCCTCCTGCGCAATTTCA 59.673 50.000 13.05 0.00 0.00 2.69
3051 3364 1.604278 GATACCCTCCTGCGCAATTTC 59.396 52.381 13.05 0.00 0.00 2.17
3052 3365 1.212935 AGATACCCTCCTGCGCAATTT 59.787 47.619 13.05 0.00 0.00 1.82
3053 3366 0.839946 AGATACCCTCCTGCGCAATT 59.160 50.000 13.05 0.00 0.00 2.32
3054 3367 0.839946 AAGATACCCTCCTGCGCAAT 59.160 50.000 13.05 0.00 0.00 3.56
3055 3368 0.107703 CAAGATACCCTCCTGCGCAA 60.108 55.000 13.05 0.00 0.00 4.85
3056 3369 1.264749 ACAAGATACCCTCCTGCGCA 61.265 55.000 10.98 10.98 0.00 6.09
3057 3370 0.107654 AACAAGATACCCTCCTGCGC 60.108 55.000 0.00 0.00 0.00 6.09
3058 3371 2.009774 CAAACAAGATACCCTCCTGCG 58.990 52.381 0.00 0.00 0.00 5.18
3059 3372 3.073274 ACAAACAAGATACCCTCCTGC 57.927 47.619 0.00 0.00 0.00 4.85
3060 3373 5.070001 TGAAACAAACAAGATACCCTCCTG 58.930 41.667 0.00 0.00 0.00 3.86
3061 3374 5.319043 TGAAACAAACAAGATACCCTCCT 57.681 39.130 0.00 0.00 0.00 3.69
3062 3375 5.946377 AGATGAAACAAACAAGATACCCTCC 59.054 40.000 0.00 0.00 0.00 4.30
3063 3376 8.451748 GTTAGATGAAACAAACAAGATACCCTC 58.548 37.037 0.00 0.00 0.00 4.30
3064 3377 7.393515 GGTTAGATGAAACAAACAAGATACCCT 59.606 37.037 0.00 0.00 0.00 4.34
3065 3378 7.393515 AGGTTAGATGAAACAAACAAGATACCC 59.606 37.037 0.00 0.00 0.00 3.69
3066 3379 8.237267 CAGGTTAGATGAAACAAACAAGATACC 58.763 37.037 0.00 0.00 0.00 2.73
3067 3380 7.750903 GCAGGTTAGATGAAACAAACAAGATAC 59.249 37.037 0.00 0.00 0.00 2.24
3068 3381 7.360861 CGCAGGTTAGATGAAACAAACAAGATA 60.361 37.037 0.00 0.00 0.00 1.98
3069 3382 6.568462 CGCAGGTTAGATGAAACAAACAAGAT 60.568 38.462 0.00 0.00 0.00 2.40
3070 3383 5.277779 CGCAGGTTAGATGAAACAAACAAGA 60.278 40.000 0.00 0.00 0.00 3.02
3123 3436 1.005394 AATTGCAAGCCAGCAGCAC 60.005 52.632 4.94 0.00 46.54 4.40
3126 3439 0.172803 GGAGAATTGCAAGCCAGCAG 59.827 55.000 4.94 0.00 46.54 4.24
3134 3447 6.878389 ACTTCTTTGTTTTTGGAGAATTGCAA 59.122 30.769 0.00 0.00 32.36 4.08
3173 3486 0.038599 TCTGTGCCAATGCCATGTCT 59.961 50.000 0.00 0.00 36.33 3.41
3174 3487 0.171903 GTCTGTGCCAATGCCATGTC 59.828 55.000 0.00 0.00 36.33 3.06
3175 3488 1.252904 GGTCTGTGCCAATGCCATGT 61.253 55.000 0.00 0.00 36.33 3.21
3176 3489 1.514087 GGTCTGTGCCAATGCCATG 59.486 57.895 0.00 0.00 36.33 3.66
3177 3490 2.048023 CGGTCTGTGCCAATGCCAT 61.048 57.895 0.00 0.00 36.33 4.40
3178 3491 2.672651 CGGTCTGTGCCAATGCCA 60.673 61.111 0.00 0.00 36.33 4.92
3179 3492 2.359850 TCGGTCTGTGCCAATGCC 60.360 61.111 0.00 0.00 36.33 4.40
3180 3493 1.915614 CTGTCGGTCTGTGCCAATGC 61.916 60.000 0.00 0.00 38.26 3.56
3181 3494 0.320683 TCTGTCGGTCTGTGCCAATG 60.321 55.000 0.00 0.00 0.00 2.82
3182 3495 0.320771 GTCTGTCGGTCTGTGCCAAT 60.321 55.000 0.00 0.00 0.00 3.16
3183 3496 1.069090 GTCTGTCGGTCTGTGCCAA 59.931 57.895 0.00 0.00 0.00 4.52
3184 3497 2.734591 GTCTGTCGGTCTGTGCCA 59.265 61.111 0.00 0.00 0.00 4.92
3185 3498 2.214181 ATCGTCTGTCGGTCTGTGCC 62.214 60.000 0.00 0.00 40.32 5.01
3187 3500 2.161808 AGTAATCGTCTGTCGGTCTGTG 59.838 50.000 0.00 0.00 40.32 3.66
3188 3501 2.161808 CAGTAATCGTCTGTCGGTCTGT 59.838 50.000 0.00 0.00 40.32 3.41
3189 3502 2.478031 CCAGTAATCGTCTGTCGGTCTG 60.478 54.545 0.00 0.00 40.32 3.51
3190 3503 1.743958 CCAGTAATCGTCTGTCGGTCT 59.256 52.381 0.00 0.00 40.32 3.85
3191 3504 1.798079 GCCAGTAATCGTCTGTCGGTC 60.798 57.143 0.00 0.00 40.32 4.79
3192 3505 0.172803 GCCAGTAATCGTCTGTCGGT 59.827 55.000 0.00 0.00 40.32 4.69
3193 3506 0.527817 GGCCAGTAATCGTCTGTCGG 60.528 60.000 0.00 0.00 40.32 4.79
3194 3507 0.527817 GGGCCAGTAATCGTCTGTCG 60.528 60.000 4.39 0.00 41.41 4.35
3195 3508 0.824759 AGGGCCAGTAATCGTCTGTC 59.175 55.000 6.18 0.00 0.00 3.51
3201 3514 6.406370 TCATATTATCAAGGGCCAGTAATCG 58.594 40.000 6.18 0.83 0.00 3.34
3233 3546 6.170506 AGATCGACACACTTATAGCCAAAAA 58.829 36.000 0.00 0.00 0.00 1.94
3235 3548 5.339008 AGATCGACACACTTATAGCCAAA 57.661 39.130 0.00 0.00 0.00 3.28
3236 3549 5.507482 GCTAGATCGACACACTTATAGCCAA 60.507 44.000 0.00 0.00 0.00 4.52
3237 3550 4.023107 GCTAGATCGACACACTTATAGCCA 60.023 45.833 0.00 0.00 0.00 4.75
3239 3552 5.109662 TGCTAGATCGACACACTTATAGC 57.890 43.478 0.00 2.02 35.96 2.97
3240 3553 6.307031 ACTGCTAGATCGACACACTTATAG 57.693 41.667 0.00 0.00 0.00 1.31
3241 3554 6.694877 AACTGCTAGATCGACACACTTATA 57.305 37.500 0.00 0.00 0.00 0.98
3244 3557 3.944055 AACTGCTAGATCGACACACTT 57.056 42.857 0.00 0.00 0.00 3.16
3245 3558 3.944055 AAACTGCTAGATCGACACACT 57.056 42.857 0.00 0.00 0.00 3.55
3264 3577 9.840427 TCTGTTTCACAAAAACAAAAACAAAAA 57.160 22.222 5.03 0.00 38.81 1.94
3265 3578 9.840427 TTCTGTTTCACAAAAACAAAAACAAAA 57.160 22.222 5.03 0.00 38.81 2.44
3266 3579 9.278734 GTTCTGTTTCACAAAAACAAAAACAAA 57.721 25.926 16.05 0.00 38.81 2.83
3267 3580 8.450964 TGTTCTGTTTCACAAAAACAAAAACAA 58.549 25.926 18.80 9.87 39.80 2.83
3268 3581 7.905493 GTGTTCTGTTTCACAAAAACAAAAACA 59.095 29.630 17.96 17.96 40.09 2.83
3269 3582 7.905493 TGTGTTCTGTTTCACAAAAACAAAAAC 59.095 29.630 15.01 15.01 40.81 2.43
3271 3584 7.254590 CCTGTGTTCTGTTTCACAAAAACAAAA 60.255 33.333 5.03 0.00 42.67 2.44
3272 3585 6.201806 CCTGTGTTCTGTTTCACAAAAACAAA 59.798 34.615 5.03 2.16 42.67 2.83
3273 3586 5.694006 CCTGTGTTCTGTTTCACAAAAACAA 59.306 36.000 5.03 0.00 42.67 2.83
3274 3587 5.226396 CCTGTGTTCTGTTTCACAAAAACA 58.774 37.500 3.59 3.59 42.67 2.83
3275 3588 4.091365 GCCTGTGTTCTGTTTCACAAAAAC 59.909 41.667 0.00 0.00 42.67 2.43
3276 3589 4.241681 GCCTGTGTTCTGTTTCACAAAAA 58.758 39.130 0.00 0.00 42.67 1.94
3280 3593 1.013596 CGCCTGTGTTCTGTTTCACA 58.986 50.000 0.00 0.00 41.37 3.58
3281 3594 0.317020 GCGCCTGTGTTCTGTTTCAC 60.317 55.000 0.00 0.00 35.43 3.18
3282 3595 0.463654 AGCGCCTGTGTTCTGTTTCA 60.464 50.000 2.29 0.00 0.00 2.69
3283 3596 0.663153 AAGCGCCTGTGTTCTGTTTC 59.337 50.000 2.29 0.00 0.00 2.78
3286 3599 0.105964 TGTAAGCGCCTGTGTTCTGT 59.894 50.000 2.29 0.00 0.00 3.41
3287 3600 1.394917 GATGTAAGCGCCTGTGTTCTG 59.605 52.381 2.29 0.00 0.00 3.02
3288 3601 1.726853 GATGTAAGCGCCTGTGTTCT 58.273 50.000 2.29 0.00 0.00 3.01
3289 3602 0.370273 CGATGTAAGCGCCTGTGTTC 59.630 55.000 2.29 0.00 40.80 3.18
3290 3603 2.456000 CGATGTAAGCGCCTGTGTT 58.544 52.632 2.29 0.00 40.80 3.32
3291 3604 4.185413 CGATGTAAGCGCCTGTGT 57.815 55.556 2.29 0.00 40.80 3.72
3313 3626 2.847133 GCAGTTACAAACGCGTGAAAAA 59.153 40.909 14.98 2.46 36.23 1.94
3314 3627 2.442424 GCAGTTACAAACGCGTGAAAA 58.558 42.857 14.98 2.04 36.23 2.29
3315 3628 1.268133 GGCAGTTACAAACGCGTGAAA 60.268 47.619 14.98 1.63 36.23 2.69
3316 3629 0.305313 GGCAGTTACAAACGCGTGAA 59.695 50.000 14.98 1.76 36.23 3.18
3317 3630 1.823260 CGGCAGTTACAAACGCGTGA 61.823 55.000 14.98 0.00 36.23 4.35
3318 3631 1.438059 CGGCAGTTACAAACGCGTG 60.438 57.895 14.98 3.14 36.23 5.34
3319 3632 0.947180 ATCGGCAGTTACAAACGCGT 60.947 50.000 5.58 5.58 36.23 6.01
3320 3633 0.247145 GATCGGCAGTTACAAACGCG 60.247 55.000 3.53 3.53 36.23 6.01
3321 3634 0.247145 CGATCGGCAGTTACAAACGC 60.247 55.000 7.38 0.00 36.23 4.84
3322 3635 1.342555 TCGATCGGCAGTTACAAACG 58.657 50.000 16.41 0.00 36.23 3.60
3323 3636 3.799137 TTTCGATCGGCAGTTACAAAC 57.201 42.857 16.41 0.00 0.00 2.93
3324 3637 5.583061 ACATATTTCGATCGGCAGTTACAAA 59.417 36.000 16.41 6.05 0.00 2.83
3325 3638 5.113383 ACATATTTCGATCGGCAGTTACAA 58.887 37.500 16.41 0.00 0.00 2.41
3326 3639 4.689071 ACATATTTCGATCGGCAGTTACA 58.311 39.130 16.41 0.00 0.00 2.41
3327 3640 5.164080 GCTACATATTTCGATCGGCAGTTAC 60.164 44.000 16.41 0.00 0.00 2.50
3328 3641 4.921515 GCTACATATTTCGATCGGCAGTTA 59.078 41.667 16.41 1.26 0.00 2.24
3329 3642 3.741344 GCTACATATTTCGATCGGCAGTT 59.259 43.478 16.41 0.00 0.00 3.16
3330 3643 3.005897 AGCTACATATTTCGATCGGCAGT 59.994 43.478 16.41 8.30 0.00 4.40
3331 3644 3.579709 AGCTACATATTTCGATCGGCAG 58.420 45.455 16.41 0.00 0.00 4.85
3332 3645 3.660501 AGCTACATATTTCGATCGGCA 57.339 42.857 16.41 2.07 0.00 5.69
3333 3646 4.734917 ACTAGCTACATATTTCGATCGGC 58.265 43.478 16.41 7.19 0.00 5.54
3334 3647 8.738199 TTAAACTAGCTACATATTTCGATCGG 57.262 34.615 16.41 0.00 0.00 4.18
3346 3659 9.116067 ACAGTGTTTGATTTTAAACTAGCTACA 57.884 29.630 0.00 0.00 40.36 2.74
3347 3660 9.946165 AACAGTGTTTGATTTTAAACTAGCTAC 57.054 29.630 1.64 0.00 40.36 3.58
3358 3671 8.878769 GTGGACATTTTAACAGTGTTTGATTTT 58.121 29.630 14.90 0.00 0.00 1.82
3359 3672 7.221838 CGTGGACATTTTAACAGTGTTTGATTT 59.778 33.333 14.90 0.00 0.00 2.17
3360 3673 6.695278 CGTGGACATTTTAACAGTGTTTGATT 59.305 34.615 14.90 0.00 0.00 2.57
3361 3674 6.183360 ACGTGGACATTTTAACAGTGTTTGAT 60.183 34.615 14.90 3.42 0.00 2.57
3362 3675 5.124138 ACGTGGACATTTTAACAGTGTTTGA 59.876 36.000 14.90 0.50 0.00 2.69
3363 3676 5.336744 ACGTGGACATTTTAACAGTGTTTG 58.663 37.500 14.90 8.81 0.00 2.93
3364 3677 5.570234 ACGTGGACATTTTAACAGTGTTT 57.430 34.783 14.90 0.00 0.00 2.83
3365 3678 6.680874 TTACGTGGACATTTTAACAGTGTT 57.319 33.333 14.05 14.05 0.00 3.32
3366 3679 6.347079 CGATTACGTGGACATTTTAACAGTGT 60.347 38.462 0.00 0.00 34.56 3.55
3367 3680 6.013085 CGATTACGTGGACATTTTAACAGTG 58.987 40.000 0.00 0.00 34.56 3.66
3368 3681 6.160664 CGATTACGTGGACATTTTAACAGT 57.839 37.500 0.00 0.00 34.56 3.55
3384 3697 9.763465 ACATTTATTTACTTTTGGACGATTACG 57.237 29.630 0.00 0.00 45.75 3.18
3430 3743 5.513094 CCAGTAGATGAGGACCAAGAAACAA 60.513 44.000 0.00 0.00 0.00 2.83
3440 3756 1.742768 CGGCCCAGTAGATGAGGAC 59.257 63.158 0.00 0.00 0.00 3.85
3443 3759 2.423446 GGCGGCCCAGTAGATGAG 59.577 66.667 8.12 0.00 0.00 2.90
3446 3762 3.537874 GTCGGCGGCCCAGTAGAT 61.538 66.667 14.55 0.00 0.00 1.98
3452 3769 3.059386 GAAAATGTCGGCGGCCCA 61.059 61.111 14.55 6.96 0.00 5.36
3476 3793 5.755375 CAGAACGAGCCATTGTTAGTGATAT 59.245 40.000 0.00 0.00 32.90 1.63
3477 3794 5.109210 CAGAACGAGCCATTGTTAGTGATA 58.891 41.667 0.00 0.00 32.90 2.15
3479 3796 3.325870 CAGAACGAGCCATTGTTAGTGA 58.674 45.455 0.00 0.00 32.90 3.41
3480 3797 2.416547 CCAGAACGAGCCATTGTTAGTG 59.583 50.000 0.00 0.00 32.90 2.74
3481 3798 2.699954 CCAGAACGAGCCATTGTTAGT 58.300 47.619 0.00 0.00 32.90 2.24
3482 3799 1.398390 GCCAGAACGAGCCATTGTTAG 59.602 52.381 0.00 0.00 32.90 2.34
3483 3800 1.271108 TGCCAGAACGAGCCATTGTTA 60.271 47.619 0.00 0.00 32.90 2.41
3484 3801 0.537143 TGCCAGAACGAGCCATTGTT 60.537 50.000 0.00 0.00 35.63 2.83
3485 3802 0.537143 TTGCCAGAACGAGCCATTGT 60.537 50.000 0.00 0.00 0.00 2.71
3486 3803 0.813184 ATTGCCAGAACGAGCCATTG 59.187 50.000 0.00 0.00 0.00 2.82
3489 3806 0.744414 GCTATTGCCAGAACGAGCCA 60.744 55.000 0.00 0.00 0.00 4.75
3490 3807 0.744414 TGCTATTGCCAGAACGAGCC 60.744 55.000 0.00 0.00 38.71 4.70
3491 3808 0.654683 CTGCTATTGCCAGAACGAGC 59.345 55.000 0.00 0.00 38.71 5.03
3492 3809 2.015736 ACTGCTATTGCCAGAACGAG 57.984 50.000 0.00 0.00 38.71 4.18
3493 3810 2.496070 ACTACTGCTATTGCCAGAACGA 59.504 45.455 0.00 0.00 38.71 3.85
3494 3811 2.860735 GACTACTGCTATTGCCAGAACG 59.139 50.000 0.00 0.00 38.71 3.95
3495 3812 3.861840 TGACTACTGCTATTGCCAGAAC 58.138 45.455 0.00 0.00 38.71 3.01
3498 3815 4.877823 TCAAATGACTACTGCTATTGCCAG 59.122 41.667 0.00 0.00 38.71 4.85
3500 3817 5.278169 CCATCAAATGACTACTGCTATTGCC 60.278 44.000 0.00 0.00 38.71 4.52
3501 3818 5.297776 ACCATCAAATGACTACTGCTATTGC 59.702 40.000 0.00 0.00 40.20 3.56
3502 3819 6.765036 AGACCATCAAATGACTACTGCTATTG 59.235 38.462 0.00 0.00 0.00 1.90
3503 3820 6.765036 CAGACCATCAAATGACTACTGCTATT 59.235 38.462 0.00 0.00 0.00 1.73
3504 3821 6.286758 CAGACCATCAAATGACTACTGCTAT 58.713 40.000 0.00 0.00 0.00 2.97
3506 3823 4.511527 CAGACCATCAAATGACTACTGCT 58.488 43.478 0.00 0.00 0.00 4.24
3507 3824 3.624861 CCAGACCATCAAATGACTACTGC 59.375 47.826 0.00 0.00 0.00 4.40
3508 3825 5.089970 TCCAGACCATCAAATGACTACTG 57.910 43.478 0.00 0.00 0.00 2.74
3509 3826 5.762179 TTCCAGACCATCAAATGACTACT 57.238 39.130 0.00 0.00 0.00 2.57
3510 3827 7.987458 TCTATTTCCAGACCATCAAATGACTAC 59.013 37.037 0.00 0.00 0.00 2.73
3511 3828 8.089625 TCTATTTCCAGACCATCAAATGACTA 57.910 34.615 0.00 0.00 0.00 2.59
3514 3831 7.348815 ACATCTATTTCCAGACCATCAAATGA 58.651 34.615 0.00 0.00 0.00 2.57
3515 3832 7.578310 ACATCTATTTCCAGACCATCAAATG 57.422 36.000 0.00 0.00 0.00 2.32
3517 3834 9.699410 AATTACATCTATTTCCAGACCATCAAA 57.301 29.630 0.00 0.00 0.00 2.69
3518 3835 9.699410 AAATTACATCTATTTCCAGACCATCAA 57.301 29.630 0.00 0.00 0.00 2.57
3519 3836 9.699410 AAAATTACATCTATTTCCAGACCATCA 57.301 29.630 0.00 0.00 0.00 3.07
3554 4402 5.578336 TCATTCGAAGTACAAAGCATCTCAG 59.422 40.000 3.35 0.00 0.00 3.35
3556 4404 6.091441 AGTTCATTCGAAGTACAAAGCATCTC 59.909 38.462 3.35 0.00 32.82 2.75
3580 4428 7.982354 AGGGTCAGATCTAAAAGTTCGAATAAG 59.018 37.037 0.00 0.00 0.00 1.73
3586 4434 5.351740 GGAAAGGGTCAGATCTAAAAGTTCG 59.648 44.000 0.00 0.00 0.00 3.95
3587 4435 5.351740 CGGAAAGGGTCAGATCTAAAAGTTC 59.648 44.000 0.00 0.00 0.00 3.01
3588 4436 5.246307 CGGAAAGGGTCAGATCTAAAAGTT 58.754 41.667 0.00 0.00 0.00 2.66
3589 4437 4.323562 CCGGAAAGGGTCAGATCTAAAAGT 60.324 45.833 0.00 0.00 35.97 2.66
3617 4465 9.635520 GTCATGTTAGCGGTATAGTATATGTTT 57.364 33.333 0.00 0.00 0.00 2.83
3618 4466 8.799367 TGTCATGTTAGCGGTATAGTATATGTT 58.201 33.333 0.00 0.00 0.00 2.71
3619 4467 8.242053 GTGTCATGTTAGCGGTATAGTATATGT 58.758 37.037 0.00 0.00 0.00 2.29
3620 4468 7.428472 CGTGTCATGTTAGCGGTATAGTATATG 59.572 40.741 0.00 0.00 0.00 1.78
3621 4469 7.335171 TCGTGTCATGTTAGCGGTATAGTATAT 59.665 37.037 0.00 0.00 0.00 0.86
3622 4470 6.650390 TCGTGTCATGTTAGCGGTATAGTATA 59.350 38.462 0.00 0.00 0.00 1.47
3623 4471 5.471116 TCGTGTCATGTTAGCGGTATAGTAT 59.529 40.000 0.00 0.00 0.00 2.12
3624 4472 4.815846 TCGTGTCATGTTAGCGGTATAGTA 59.184 41.667 0.00 0.00 0.00 1.82
3625 4473 3.628942 TCGTGTCATGTTAGCGGTATAGT 59.371 43.478 0.00 0.00 0.00 2.12
3626 4474 4.219143 TCGTGTCATGTTAGCGGTATAG 57.781 45.455 0.00 0.00 0.00 1.31
3681 4529 0.608640 ATCCACCGACAGAACTCCAC 59.391 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.