>input_sequence_45043
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----------------------------------------------ATGGCTAGTGCGGAGGATGTGAAGCAGCGGCAGG
TTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTCCGGTGCACTGAGTGTGGCAGCCAGTCCATTGAAGATTCGCAA
GCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTT-GTTCTATA-ACCTCGTGATGATTTGCTTATTCCTCTGAAGTGC
CTGACCTTGTTGGTTCAGTTAGTGGCCAAACTTTTAGTAGCAGAGATTTGC-TTATTCCTGTATACCTTTTCATGTTTCC
ACGGCATCCAACTTTTGCTTTGTTGCTCTCTTGATCTTAACAAAAGCCAACTAAGATAGGAAATTTGATAACACTTTTAA
CTGAGGTGACACTTGTACTTGAGACCTTATACTGATCAATACAACAACAACAAAGCCTTTCAGTCCCAAACAAGTTGGGG
TAGGCTCTAGGACTGATCAATAATGACATAAAATAGAATGTGTTCACC--------------------------------
----------------------------GGCACCCAATAGTTAAATGCAAAATAGGGTTGAGAAACTTGCAATGATATTT
GCTACTATCATTTTTTTTTTGAAGAACTACAGTCTGTCTATATGTCCTT-TTTGGA------ATGATAGAGATGGTTTTG
GTAATGCCGCAACTGGTTTGGTTCTTCGATTATATACATTTGCGTCCTTTTTACTTGACTAGGTTTCTTAGACTTGGATG
ATATTTC----------TGCCTATTCAGCTATATTAAATTTACATTACCTTTCGCTGTACCAGAACACTGTTTTCTGATT
CACAAGCA-TTTATTTGCACCATGTACTACATATACACGAGAAAAAAATTAATCTTGAGTTCTCAACGTCAATATAGGCG
CTTGGTTTGTATGCTTTGAAGCATCGAAATATTATTGCCTTGCACCCAATATGTCATGGGAAGCTTCACGGCCTCACAAA
CTGATATATGTGTCA--TTTTTGCAGTTAATTCGTGATGAAATAAAATCTGGAAAGAGTGATAAGGAGATATACAAAAAA
CTAGAAGAAGACTTTGGAGAAACAGTTCTATATGCCCCTAAATTTGATCTTCAAACTGCTGCCATATGGTTATCACCGGT
GAGCCTTAATTATGATTCTTTTTCCATGCTGTTCAAGTGTCCGTGC----------------------------------
---------------------TTTTATGAATGCATTG-TGTG-------TCTTGGTGAACCCAAGCATATTCCATCATCA
CAAACTTTTGCGTCAAGATGTTTTTCATAAGTACATG--------------------GATGATTCTCTTTCATAGTTACT
TGGTGAATTTGCAACAAGTGGAAGTAAA--ATATTTCAATTCTTAAGAAAATCTAA----------------------TT
CCAGCTGATCCCTTGTTGTAGTTCAATGTAGTCTGTAGAGAGATACAA---TGATATTGA-----CCTGCTTTCGTTTGT
GCTTAGTAAAATTATGTTTTG--CTGCAGCGGAACATGATG-AAATGAAGACTTCAAAATATTGAAGTATCTACTCCCCT
GAATT-AGTATCATTTTATCCTGTGTAGGTGACTGTGATTTCTAGGGTAGGCAGTTGAGAGCCTGATACATTAAATCCTG
TGCAGGTCATTGTGGGCGGCGTAGCAGCTGGTGTGTGGGCTTACCAAAAGCACAGGCAAAGGACCAACGTTCACATCATG
GCTCTGAACCTCGTCCGAGGGGTTCCCCTGACTCCAAGGGAGAAGGAGACGATGATCGACATCCTCACGCCGCCTCCGCC
GGCAAGAAGCTGGTGGTGGCCTCTCAAATGA-------------------------------------------------
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>chr4D_1_TraesCS4D01G319500
GGCCTTTTTCCCTCAGATACACCAAGACAAAATTAGAGCTCTACTCAGGACTTGAGGTTCGAGCAGCTCATGAACTTCCA
GTATGTTGTATAACATTGGTCGACATGCGCTTGAATATGTGATAATGTACTCATATGGGTCCACGGTGGACTAGAGGTTT
GGCTGGCATTG---ATATTTAAAGAATGCTGTGTCAT-GATTCTGGTAGAAAGTATCGGTTATTCTACAAACATTATAGG
ATATACTGGGCTGAAGGC--AAAATAAAATAAAAATTCACAATATACTCCCTCCGTTTTTATTTACTTCGCATATTAGCT
TTGGTCAAAGTCAAGCTTTATAAACTTTGAAAAAATTTATAGACAAAAATATTGACATGTACAATAACAAATCAATACCA
TTAGATTCATTATTGAACGTACTTTCTCGTCATATAGATTTTTTATCGTAAATATTTATATTCTTTCCTATAAACTTGAT
CAAACTTTATGAAGTTTGACTTCAGTCAACTCTAATATGCAGAGTAAATAAAAACGGAGGGAGTACTTGTTAGTCTGTGA
ATTTCTAATTAGATTATTCTTGGGACAATAGTAATTCTGCTTGTGATCATATTTCGTCTGAAGAGCTGCTACTATCTGCT
ACCATTTCTGTTCAGTCCTATAAGAAATATCTGAACAAAGCTTCGTTATGATATAATTGCAAAAATCTTTATGAACCAGC
AAAAGGCATGTTCCAAGTTGGGACCAGCAAACCCTACTTTCTTCACGAACTGGTTCAAGAATACATTGTAGCTTGAATCA
ACAAAAGACAAGACTAAAACTTTGCCAAGCTTACTTGATAGTTTAGTCTTGTCATAGTAACTTAATCCTAATAGTTGTGA
TCTGTTTTATTTGTAGAACCTGGGTGGTATTATTTTGTACACTAAGTACATAAGTAACATTTTATTTCTTCAGGTTCTTA
TACAGCTACTTTGTTACAGTTAATACAGATAACATTATCTTGTACGATGGCTAGTGCGGAGGATGTGAAGCAGCGGCAGG
TTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTCCGGTGCACTGAGTGTGGCAGCCAGTCCATTGAAGATTCGCAA
GCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTT-GTTCTATA-ACCTCGTGATGATTTGCTTATTCCTCTGAAGTGC
CTGACCTTGTTGGTTCAGTTAGTGGCCAAACTTTTAGTAGCAGAGATTTGC-TTATTCCTGTATACCTTTTCATGTTTCC
ACGGCATCCAACTTTTGCTTTGTTGCTCTCTTGATCTTAACAAAAGCCAACTAAGATAGGAAATTTGATAACACTTTTAA
CTGAGGTGACACTTGTACTTGAGACCTTATACTGATCAATACAACAACAACAAAGCCTTTCAGTCCCAAACAAGTTGGGG
TAGGCTCTAGGACTGATCAATAATGACATAAAATAGAATGTGTTCACC--------------------------------
----------------------------GGCACCCAATAGTTAAATGCAAAATAGGGTTGAGAAACTTGCAATGATATTT
GCTACTATCATTTTTTTTTTGAAGAACTACAGTCTGTCTATATGTCCTT-TTTGGA------ATGATAGAGATGGTTTTG
GTAATGCCGCAACTGGTTTGGTTCTTCGATTATATACATTTGCGTCCTTTTTACTTGACTAGGTTTCTTAGACTTGGATG
ATATTTC----------TGCCTATTCAGCTATATTAAATTTACATTACCTTTCGCTGTACCAGAACACTGTTTTCTGATT
CACAAGCA-TTTATTTGCACCATGTACTACATATACACGAGAAAAAAATTAATCTTGAGTTCTCAACGTCAATATAGGCG
CTTGGTTTGTATGCTTTGAAGCATCGAAATATTATTGCCTTGCACCCAATATGTCATGGGAAGCTTCACGGCCTCACAAA
CTGATATATGTGTCA--TTTTTGCAGTTAATTCGTGATGAAATAAAATCTGGAAAGAGTGATAAGGAGATATACAAAAAA
CTAGAAGAAGACTTTGGAGAAACAGTTCTATATGCCCCTAAATTTGATCTTCAAACTGCTGCCATATGGTTATCACCGGT
GAGCCTTAATTATGATTCTTTTTCCATGCTGTTCAAGTGTCCGTGC----------------------------------
---------------------TTTTATGAATGCATTG-TGTG-------TCTTGGTGAACCCAAGCATATTCCATCATCA
CAAACTTTTGCGTCAAGATGTTTTTCATAAGTACATG--------------------GATGATTCTCTTTCATAGTTACT
TGGTGAATTTGCAACAAGTGGAAGTAAA--ATATTTCAATTCTTAAGAAAATCTAA----------------------TT
CCAGCTGATCCCTTGTTGTAGTTCAATGTAGTCTGTAGAGAGATACAA---TGATATTGA-----CCTGCTTTCGTTTGT
GCTTAGTAAAATTATGTTTTG--CTGCAGCGGAACATGATG-AAATGAAGACTTCAAAATATTGAAGTATCTACTCCCCT
GAATT-AGTATCATTTTATCCTGTGTAGGTGACTGTGATTTCTAGGGTAGGCAGTTGAGAGCCTGATACATTAAATCCTG
TGCAGGTCATTGTGGGCGGCGTAGCAGCTGGTGTGTGGGCTTACCAAAAGCACAGGCAAAGGACCAACGTTCACATCATG
GCTCTGAACCTCGTCCGAGGGGTTCCCCTGACTCCAAGGGAGAAGGAGACGATGATCGACATCCTCACGCCGCCTCCGCC
GGCAAGAAGCTGGTGGTGGCCTCTCAAATGATGTTCTTTCATGTCCTTAGATGCGACATAGGATGAATACTC----ATTT
CCAGTGGTAGCATCATACAAAATGATCTGGATGGCTGAAATTTAGTGCA-TGATTTCAATGCACCTCTCACGCCCTGCTT
GAAGCTTGGGCCATGGATTTTCTTTGGCTT-----TAACCGGATGCTTGCGATGCATTGGCGGTCTAGGATGTACTCCTA
TGAACCAAGCTGTAGTACATGCTGCCTGCCTTCT---GTATGTAGGCTGTGAAGTGCAAGTTTATGGAAG----------
--------------------------------------------------------------------------------
-TTTTTATCCCCAAAATAAGCTGAAGTTTTTAAGTGATGATATCTTTACAGTTGGAAGTGCAAGTTCATGTACCTGCTCT
ACTGAAATTGCGCAGGAGGGTATCTTGTTTGTTTCATCTAACCTGCGATGTTGATCCCCCAGCTTGGCGTACTAGGTGCT
GCTGGCTTGCAATTCTCCAAAAACAAAGAAGTTGGTGCTGGCATGAGACATGGCATTGGCACAGACCGACAGACGATTAC
TGGCCCTTGATAATATGATCTATTTTTTTTGGCTATAAGTGTGTCGATCTAGCAGTTTTTTGTTTTTGTTTTTGTGAAAC
AGAACACAGGCGCTTACATCGTTTTTTTTTCACGCGTTTGTAACTGCCGATCGAAATATGTAGCTAGTTTAAAATCAAAC
ACTGTTAAAATGTCCACGTAATCGTCCAAAAGTAAATAAATGTTGAATTAGCTCAAATTCATTTGTTTCTT---GGTCCT
CAT-CTACTGGGCCGCCGACATTTTCACCCAAATATCACTAACAATGGCTCGTTCTGGCAATAGCAGTAGTCATTTGATG
GTCTGGAAATAGATGTAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------TTTTTATTATA
TCTGAGATGCTTTGTACTTCGAATGAACTTATTCGAACTTTTAGATCTGACCCTTTCCGGGAAAAAACATATACTATACC
GCTAACATGACACGATTGAACGAAGCACTGTTGTGAGCGATAAGATAGGTGGAGTTCTGTCGGTGGATTA
>chr4B_3
--CCTTTTTTCCTTAGATACACTAAGACAAAATTAGAGCTCTACTCAGGACTTGAGGTTCGAGCAGCTCATGAGCTTCCA
GTATGTTGTATAACATTGGTTGACATGTGCTTGAATATGT--------ACTCATATGGGTCCACGGTGGACTAGAGGTTT
GGCGGGCA-TTTATATCTTTAAAGAATGCTGTG-CAT-GATTCTAGTAGAAAGTATCGGTTATTCTACAAACATTATAGG
ATATACTGGGCTGAGGAC--AAAATAAATTAAAATTCACAAT--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------GTACTTGTTAGTCTGTGA
ATTTCTAGTTAGATTATTCTTGGGAAAATAGTAATTCTGCTTGTGATCATATTTCATCTAAAGAGCTGCTACTATCTGCT
ACCATTTCTCTTCAGTACTATAAGAAATATCTGAACACAGTTTCGTTCTGATATAATTGCAAAAATCTTTGTGAACCAGC
AAAAGGAATGTTCCAAGTTGGGACCAGCAAACCCTATTTTCTTCATGAACTGGTTCAAGAATACATTGTAGCTTGAATCA
GCAAAAGACAAGAGTAAAACTTTGCCAAGCTTACTTGATAGTTTAGTCTTGTGATAGTAACTTAATCCTAATAGTTATGA
TCTGTTTTGTTTGTAGAACTTGGGTGGTATTATTTTGTACACTACGTACATAAGTAACATTTTATTTCTTCAGGTTCTTA
TACAGCTACTTTGTTACAGTTAATACAGATAACATTATCTTTTACCATGGCTAGTGCGGAGGATGTGAAGCAGCGGCAGG
TTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTACGGTGCACTGAGTGTGGCAGCCAGTCCATTGAAGATTCGCAA
GCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTC-GTTCTATA-ACCTCGTGATGATTGGT--------------TGC
CTGACCTTGTTGGTTCAGTTAGTGGTCAAACTTTTAGTAGCAGAGATTTGC-TTATTCCTGTATACCTTTTCATGTTTCC
ACAACATCCAACTTTTGCTTTGTTGCTCTCTTGATCTTAACAAAACCTAACTAAGATTGGAAATTTGATAACACTTTTAA
CTGAGGTAACACTTGTACTTGAGACCTTGTACTGATCAATACAACAACAACAAAGCCTTTCAGTCCCAAACAAGTTGGGG
TAGGCTCTAGGACTGATCAATAATGACATAAAATAAAATGTGTTCACC--------------------------------
----------------------------GGCACCCAATAGTTAAATGCAAAATAGGGTTGAGAAACTTGCAATGATATTT
GCTACTATCATTTTTTTTTTGAAGAACTACAGTCTGTCTATATGTCCTT-TTTGGA------ATGATAGAGATGGTTTTG
GTAATGCCGCAACTGGTTTGGTTCTTCGATTATATACATTTGCGTCCTTTTTACTTGACTAGGTTTCTTAGACATGGATG
ATATTTC----------TGCCTATTCAGCTATATTAAATTTACATTACCTTTCGCTGTACCAGAACACTGTTTTCTGATT
CACAAGCA-TTTATTTGCACCATGTACTACATATACACGGG-AAAAAATTAATCTTGAGTTCTCAACGTCAATTAAGGCG
CTTGGTTTGTATGCTTTGAAGGATCGAAATATTATTGCCTTGCACCCAATATGTCATGGGAAGCTTCACGGCCTCACGAA
CTGATATATGTGTCA--TTTTTGCAGTTAATTCGTGATGAAATAAAATCTGGAAAGAGTGATAAGGAGATATACAAAAAA
CTAGAAGAAGACTTTGGAGAAACAGTTCTATATGCCCCTAAATTTGATCTTCAAACTGCTGCCATATGGTTATCACCGGT
GAGCCTTAATTATGATTCTTTTTCCATGCTGTTCAAGTGTCCGTGCTTTTATTATACTAGAAATATTTTCACTTGCACTT
TTTTAGCCTATTATTTGTTCGTTTTATGAATGCATTG-CGTG-------TCTTGGTGAACCCAAGCATATTCCATCATCA
CAAACTTTTGCGTCAAGATGTTTTTCGTAAGTACGTG--------------------GATGATTCTCTTTCATAGTTACT
TGGTGAATTTGCAACCAGTGGAAGTAATATATATTTCAATTCTTAA-AAAATCTAA----------------------TT
TCAGCTGATCCCTTGTTGTAGTTCAATGTAGTCTGTAGAGAGATAAAA---TGATACTGATTTGCCCTGCTTTTGTTTGT
GCTTAGTAAAATTATGTTTTG--CTGCAGCGGAACATGATA-AAATGAAAACTTCAAAATATTGAAGTATCTATTCCCCT
GAATT-AGTATCATTTTATCCTGTGTAGGTGATTGTGATTTCTAGGGTAGGCAGTTGAGAGCCTGATACATTAAATCCTG
TGCAGGTCATTGTGGGCGGCGTAGCAGCCGGTGTGTGGGCTTACCAAAAGCACAGGCAAAGGACCAACGTTCACATCATG
GCTCTGAACCTCGTCCGAGGGGTTCCCCTGACTCCAAGGGAGAAGGAGACGATGATCGACATCCTCACGCCGCCCCTGCC
GGCAAGGAGGTGGTGGTGGCCTCTCAAATGATGTTCTTCCATGTCCTTAGACGCGACAC-GAG----TGGGTACCAATTT
CCAGAGGTAC---------AAATGTTCAGGATGGCTGGAATTCTAGCGTGTGATTTCGATGCACATCTCGCGCCCTGCTT
GAAGCTTGTGCTACAGATTTTTTT----GGTTTTATAACCGGATGCTTGCGATATCTTGGTGGTTTGTGATGCATGAACC
TAAGTAGCTAGCAGCACATGT-----TGCCTTCC---GTATGCGGGCTGTGAAGCTGAAAAAGAGCCTCCTGTTCAAGTG
TAGTTTCTTCCCTGTTAAACTGACAAACATGAGGTGTCACTGCTGACCCTCTGTGCTAGCAGTCTAGCACAGAAGTAGAG
CTTTTTGTTCCCAGAATAAGCTGCAGTTTTTAATTGGATTTTCGTTATGGATTTTCCTAGTCTCTTTGATGATCGATGC-
-----------------------CTTGTTTGTTTCATCGAACCTGCGATGTTGATCCCCCAGCTTGGCGTACTAGATGGT
GCTGTCATGCAATTCTCCAAAAACAAAGAAGTTGATGCTGGCATGCATACGTAGCAGTGGC-------ACAGATGATTAC
TGGAGGTTTTCTCTCTTACTACTAACTAAAGTTCATCGGAGGTTGTAAAAGAAAATCCGAGTTGAAATCTTTCAAAAA--
--------------------------------------------------------------------------------
--------------------------------TAAATAAATATTAAATTAGCTCAAATTCATGTGTTTCTT---GATCTT
CTAGCTACGGGGCCGCCGACATTTTCGCCCAACGACTGAACGGAACACTGTATTTTTCTTCTTCTCTGAGCTAAGAACGG
AACACTGTTGTGAAGGATAAGACAGCTGGACTTCTGTCGATGGATTAACCCGGCCCGAAATATATAGATTTGGTTACAGA
T----------------------------------CAAGCTCTCGTCCTCGTAGAGA--TCAGAAACCACACACATGTAT
ACAGTGCACACATTTGAACAAGTGCCAC------------------------------------CAGCAATGTTACACAG
ACACAGTCACTGCCAAGAGGGGACACGCGGCAACACC-------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CTCTTTCACACACCCACAGGTGTACGGCCTGGTGGATGT
ATATTGTACCTCCGGGCTCCAGTCATTTATACTGCATCAATCGATTCCAGGAGGACAGATGTTGGGAGGTTTTTATTATA
TTTAAGATGCTTTGAACTTTTTAGATCTAGAATACCGCTAACATTTTTTTTTTGCGAAAAAAA-----------TATACC
GCGAACATGATACGATTGAACGAAGCACTGTTGTGAGCGATAAGATAGCTGGAGTTCTGGCGGTGGATTA
>chr5A_3
--CCTTTTTTCCTCAGATACACTAAGACAAAATTAGAGCTCTACTCAGAACTTGAGGCTCGAGCAGCTCATGAACTCCCA
GTATGTTGTATAACATTGGTTGACATACGCTTGAGTATGT--------ACTCATATGGGTCCATGGTGGACTAGAGGTTT
GGCGGGCA-TG---ATCTTTAAAGAATGATCTATCATGGATTCTAGTAGAAAGTATAAGTTATTCTACAAACATTATAGG
ATATACTGGTCTGAGGGAAAAATAGAAATAAAAATTCACAAT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GCATTTGTTAGTCTGTGA
ATTTCTAATTAGATTATTCCTGGGACAATAGTAATTCTATTTGTGATCATATTTCGTCTGAAGAGCTGCTACTATCGGCT
ACCATTTCTCTTCAGTACTATAAGAAATATCTGAACTGAACTTCGTTAT-ATATAATTGCAAAAATCTTTGTGAACCAGC
GAAAGGCA---------TTGGGACCAGCAAACCCTATTTTCTTCAGGAACCGGTTCAAGAAAACATTGTAGCTTGAATCA
GCAAAAGACAAGAGTAAAACGTTGCCAAGCTTACTTGATAGTTTAGTCTTGTCATAGTAACTTAATCCTAATAGTTATGA
TCTGTTTTATTTGTAGAACTTGGGTGGTATTATTTTGTACATTAAGTACATAAGTAACATTTTATTTCTTCAGGTTCTTA
TACAGCTACTTTGTTACAGTTAATACAGATAATATTATCTTGTACCATGGCTAGTGCGGAGGATGTGAAGCAGCGGCAGG
TTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTACGGTGCACTGAGTGTGGCAGCCAGTCCATTGAAGATTCGCAA
GCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTC-GTTCTATA-ACCTTGTGATGATTGGT--------------TGC
CTGACCTTGTTGTTTCAGTTAGTGGTCAAACTTTTAGTAGCAGAGATTGGC-TTATTCCTGTATACCTTTTCATGTTTCC
ACAACATCCAAATTTTGCTTTGTTGCTCTCTTGATCTTAACAAGACCTAACTAAGATTGGAAATTTGATAACACTTTTAA
CTGAGGTAACACTTGTACTTGAGACCTTGTACTGATCAATACAACAACAACAAAGCCTTTCAGTCCCAAACAAGTTGGGG
TAGGCTCTAGGACTGATCAATAATGACATAAAATAAAATGTGTTCACC--------------------------------
----------------------------GGCACCCAATAGTTAAATGCAAAATAGGGTTGAGAAACTTGAAATGATATTT
GCTACTATCAATTTTTTTTTTGAAGAA---------TCTATATGTCCTG-TTTGGATTTGGAATGATAGAGATGGTTTTG
GTAATGCCGCAACTGGTTTGGTTCTTCGATTATATACATTTGCGTCCTTTTTACTTGACTAGGTTTCTTAGACTTGGATG
ATATTTC----------TGCCTATTCAGCTATATTAAATTTACATTACCTTTCACTGTACCAGAACACTGTTGTCTGATT
CACAAGCA-TTTATCTGCACCATGTACTACATATACACGAGAAAAAAATTAATCTTGAGTTCTCAACGTCAATAAAGGCA
CTTGGTTTATATGCTTTAAAGGATTGAAATATTATTGCCTTACACCCAATATGTCATGGGAAGCTTCACGGCCGGACGAA
CTGACATATGTGTCA--TTTTTGCAGTTAATTCGTGATGAAATAAAATCTGGAAAGAGTGATAAGGAGATATACAAAAAA
CTAGAAGAAGACTTTGGAGAAACAGTTCTATATGCCCCTAAATTTGATCTTCAAACTGCTGCCATATGGTTATCACCGGT
GAGCCTTAATTATGATTCTTTTTCCATGCTGTTCAATTGTCCGTGCTTTTATTATACTAGAAATATTATCACTTGCACTT
TTTTAGCCTATTATTTGTTCGTTTTATGAATGCATTG-TGTG-------TCTTGGTGAACCCAAGCATATTCCATCATCA
CAAACTTTTGCATCAAGATGTTTTTCGTAAGTACGTG--------------------GATGATTCTCTTTCATAGTTACT
TGGTGAATTTGCAACCAGTGGAAGTAAA--ATATTTCAATTCTTAA-AAAATCTAA----------------------TT
CCAGCTGATCCCTTGTTGTAGTTCAATGTAGTCTGTAGAGAGATAAAT---TGATACTGATTTGACCTGCTTTCATTTGT
GCTTAGTAAAATTATG--TTG--TTGCAGCGGAACATGGTA-AAATGAAGGCTTCAAAATATCGAAGTATCTACCCCCCT
GAATT-AGTATCATTTTATCCTGTGCAGGTGATTGTGATTTCTCGGGTAGGCAGTCGAGAGCCTGATACATTAAATCCTG
TGCAGGTGATTGTGGGCGGCGTAGCAGCTGGTGTGTGGGCTTACCAAAAGCACAGGCAAAGGACCAACGTTCACATCATG
GCTCTGAACCTCGTCCGAGGGGTTCCCCTGACTCCAAGGGAGAAGGAGACGATGATCGACATCCTCACGCCGCCCCTGCC
GGCAAGGAGGTGGTGGTGGCCTATCAAATGATGTTCTTTCATGTCCTTAGACGCGACATTGAG----TGGGTACCAATTT
CCTGAGGTAC---------AAATGTTCAGGATGGCTGGAATTTTAGCACGTGATTTCGTTGCACATCTCGCGCCCTGCTT
GGAGCTTGGGCTACAGATTTTTTTTCTGGGTTTTATAACCGGATGCTTGCGATACCTTGGTGGTTTGTGAAGCATGAACC
----TAGCTAGCAGCACATGT-----TGCCTTCCTCCGTATGCTGGCTGTGAAGCTGAAAAACAGCCTCCTGTT-AAGTG
TAGTTTCTTCCCT-----------AAACATGTGGTGTCACTGCTGACCCTCTGTGCTAGCAGTCTAGCACACAAGTAGAG
CATTTTGTTCTCAGAATAAGCTGCAAATTTTAATTGAATTTTCGTAGGCTCTT----------------TGATCGATGT-
-----------------------CATGTTTGTTTCATCTAACCTGCGACCTTGATCCCCCAGCTTGGCGTACTAGATGGT
ACTGGCATGCAATTCTCCATAAACAAACAAGTTGGTGCTGGCATGCATACATAGCAGCGGC-------ACAGATGATTAC
TGGAGGTTTTCTCTCTTA------ACTAAAGTTCATCGGAGGTTGTAAAAAAAAATCGGAGTTGAGGTCTTTCAAAAA--
--------------------------------------------------------------------------------
--------------------------------TAAATGAATGTTAAATTAGCTCAAATTCATGTGTTTCTTCTTGATCTT
CTAGCTACGGGGCCGCCGGTATTTTCACCCAACGACTGAACGGAGCACTGTTGTG-------------------------
-------------AGGATAAGATAGCTGGAGTTCTGTGGATGGATTAACCCGGCCCGAAATATATACTTTCTCCGTTCCG
AATTACTTGTCGCACGTATGGATGATAACCAGGTACAAGCTCTCGTCCTCGTAGAGAGATCAGAAACCACACACATGTAT
ACAGTGCACACATTTGAACAAGTGCCACCAGCAACAGCAATGTTATACCTGCAAAAAAAAGCAACAGCAATGTTACACAG
ACA--GTCACTGCCAAGAGGCGACACGCGTCAACACACTCTTTCACATGGCAGCCCAGTGGCAAGGTCACAGTGGTATTT
CCTTGTAGACCGGAGTTTAAATCCCGTCGGTAGCGAATTTTTACGATCTCATCGGGGTGGGCTTCTTCTATAAAAATATG
TCCTGGATGCTAGTGTCTAAGGATCTCATTTTTTTAACACACTCTTTCACACACCGACAGGTATACGGCTTGGTGGATGT
ACATTGTACCTCCAGGCTACAGCCATTTATACCCCATCAATCGATCCCAGGAGGACAGATGCTGGGAGGTTTTTATTATA
TTTAAGATGCTTTGTACTTCGAATGAAATTTTAATCTGATCTTTCTCGGGGTG--GAAAAAAA-----------CATACC
GCTAACATGACACGATTGAGCGAAGCACTGTTGTGAGCGATAAGATAGCTGGAGTTCTGTCGGTGGGTTA
>chr1D_953
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TA
TACAACTATTTTGTTACAGTTAATACAAATCATATTATCCAGTATCATGGCCACCGAGGAGGATGTTAAGCAGCGGCAGA
TCGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTCCGGTGCACTGAGTGTGGCAGCCAGTCCATTGAAGATTCACAA
GCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTCCGTTCTATATACCTCGTAATGATCAGT--------------TGC
TTGACCTTCTCCATCCAGTTAGTTGTCAAGCTTTTAGTAGCAGAGATTTT--TTATGCCTTTATGTTTTTTCATGCTTCC
ACAGCATCCAACCTTTGCTTTGCTGATCTCTTGATCTCACCCAAGCCTAACT----------------------------
--------------------------------------------------------------------------------
---------------------------------------GTGTTCGAATTAACCATTTGATTAGAAATGGACTAGCTAT-
--TATCTCGTTACTCAAAGATGTTCACAGGCACCCAATGGTTTACTGCAAAATAACGTTGAGAAACTAG-AATGATGTTT
GGTATTATAAATATTTATCTAAAAGAACTCTATCTGTCTATACTTA-TT-TTTGTA------ATGACAAAGATGATCTTG
GAAATGCCACAGCTGGTTTGGTTCTTGGATTATATA--TTTATGTGTTTTTGACTTGACT--GTTTCTAAGACCTTGATA
ATATTTTTGCCCTAGTATGCCTTTTCAGCTATCTTAAGTTTACATTCCCTATTGGTGCACAGGAACACTGTTGTCTGGTG
CACAAGCAATTTATTTGCACCATGCACTATGTATACATGC---AATATTTAATCTTGAGTTCTTGACATAAATAAATGCC
CTAGTTCTATATGCTTTAAAGGATTGAAATATTATTGCCAGACACGCAGTATGTCATGG-AAGCTTCATGGC-TCAGGTA
ATCACATTTGTGT-ATTTTTTTGCAGCTAATTCGCGATGAAATAAAATCTGGCAAGAGTGATAAGGAGATATACAAAAAA
ATAGAAGACAACTTTGGAGAAACAGTTCTATATGCCCCTAAATTTGATATTCAAACTGCCACTATATGGTTATCGCCGGT
GAGCCTAATT----------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr1B_961
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------TATTTTGTTACAGTTAATACAGATCATATTATCCCGTATCATGGCCACGGAAGAGGAC----AGCAGCAGCAGA
TTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTCCGGTGCACTGAGTGTGGCAGCCAGTCCATTGAAGATTCACAA
GCAGATGTTGCGGTTCTCCTTAGAAGGGTGCTTTTCCGTTCTATATGCCTTGTGATGATTAGT--------------TGT
TTGACCTTCTCCATCCAGTTAATTGCCAAGCTTTTAGTAGCAGAGATTTTGTTTATTCCTGGTTTTTCAAGTAATATT--
----------ACCTTTGCTTTGTTGATCTCTTGATCTAAGCCACGCCTAACTAACATTGGAAATTTGATAACACTTGTAA
CTGAGGTAACATTTGGACCCGAAACCTTGC--------------------------------------------------
-----------ACTGATCAATAATGACGTAAAATAAAATGTGTTTGATTTAACCATTTGATCAGAAATGGACTAGCCAT-
--TTTCTCGTTATTCAAAGATGTTCACAGGCACCCAATAGTTTACTGCAAAGTAACGTTGAGAAACTTG-AATGATGTTT
GCTATTATAAATATTTATCTGAAAGAAGTCTGTCTGTCTATATGCCCTT-TTTGAATG--------CAACAATGATCTTG
GTAATGCCACAGCTGGTTTCGTTCTTGGATTATACA--TTTATGTTTTTTTTAG-TGAGT--GTTTCTAAGACTTTGATA
ATATTCTTGCACTGGTATGCCTTTTCAGCTATCTTAAATTTACATTATCTATTGGTGCACTGGAACACCCTTGTCTGGTG
CACAAGCA-TTTATTTACCCCATGCACAATGTATACATGC---AAAATCTAATCTTGAGTTCTTGACATAAATAAATGTA
CTAATTCTATATGCTTTAAACGATTGAAATATTATTGCCAGACACGCAGTATGTCATGG-AAGCTTCATGGC-TCAGGTA
ATCACATCTGTGTAATTTTCTTGCAGCTAATTCGCGATGAAATAAAATCTGGCAAGAGTGATAAGGAGATATAGAAAAAA
TTAGAAGACGACTTTGGAGAAACAGTTCTATATGCCCCTAAATTTGATATTCAAACTGCCGCTATATGGTTATCGCCGGT
GAGCCTAATTGCAAA----TTTAGCATGCTATTCA--------TGCTTTTATTGTACTAGAAGTAATATTACTTGCACTT
C-TTAGCACATTATTTGTTCGTTTCATGCATGCATTG-TGTACCCTGGACCCTGGTGAACCCATGT-------ATTATCA
CAAACTTTTGCGTCAAGATGTTGTTCATAAGTAATAGGCAGCATTAACACAAATGCTGATGATTCTCTTTCCTAATTATT
GGGTGAATTTGCACTTATGGATGTAAAA--ATATCTGAATTTCTAA-AGAAGCTAATCGATAACTGAGGATTCCAGGTTT
CTAGCTAATCCCTTGTTGTATCTCGACTTCCGTATAGAGACAGTCAGACAGTGATGCTTCTTTGAACTGCATTTATTCGT
GCTTAGTAAAATAAAATTAAAATCTGCAGCAGAACATGATACAATTGAACACTTCAAATTATTTAAGTATCTAATTCCCT
AATTT-AAACATTTCATGTACAACTG----------GGATTCTAGGGTAGGTAGTTCAAAACCTGACATAGTAAAT--TA
TGCAGGTCATTGTGGGTGGGGTTGCAGCTGGTGTCTGGGCTTACCAAAAGCATAGGCAAAGGACTAACATTCACATTATG
GCTCTGAACCTTGTCCGAGGGGTTCCCCTGACTCCAAGGGAGAAGGAGACGATGATTGACATCCTTACACCGCCTCTTCT
AACTAGGAGATGGTGGTGGCCTGTCAAGTGATGTTC----ATGTCCTGCGATGCAACATATAG----TACTA----ATTT
GCAGTGTTAGCATTATATGG-ATGATCAGGATGGCTGAATTTGGCGCATG------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr1A_1071
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------TCCGGTGCACTGAGTGTGGAAGCCAGTCCATTGAAGATTCACAA
GCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTCCGTTCTATATATCTCGTGATGATCAGT--------------TGC
TTGACCTTCTCCATCCAGTTAGTTGTCAAGCTTTTAGTAGCAGAGATTTTT-TTATACCTTTATATTTTTTCATGCTTCC
ACAGCATCCAACCTTTGCTTTACTTATCTCTTGATCTCAGCCAAACCTAAC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------TGTGTTTGAATTAACCATTTGCTTAGAAATGAACTAGCTACT
TGTATCTCGTTACTCAAAGATGTTCACAGGCGCCCAATGGTTTACTGCAAAATAACGTTGAGAAACTTG-AATGATGTTT
GCTATTATATATATTTATCTGAAAGAACTCTATCTGTCTATACTTA-TTGTTTGTA------ATGACAAAGATGATCTTG
CAAATGCCACAGTTGGCTTGGTTCTTGGATTATATA--TTTATGTGTTTTTGACTTGATT--GTTTCTAAGACTTTGATA
ATATTTTTGCCCTGGTATGCCTTTTCAGCTATCTTAAATTTCCATTACCTATTGGTGCACAGGAACACTGTTGTCTGGTG
CACAAGCAATTTATTTGCACCATGCACTATGTATACATGC---AATATTTAATCTTGAATTCTTGACATAAATAAATGCC
CTAGTTCTATATGCTTTAAA-GATTGAAATTTTATTGCCAGACACGCAGTATGTGATGG-AAGCTTCATGGC-TCAGGTA
ATCACATATGTGTAATTTTTGTGCAGCTAATTCGCGATGAAATAAAATCTGGCAAGAGTGATAAGGAGATATACAAAAAA
TTAGAAGACGACTTTGGCGAAACGGTTCTATATGCCCCTAA-TTTGATATTCAAACTGCCGCTATATGGTTATCGTCGGT
GAGCCTAATTGCAAA----TTTAACATGCTATTCA--------TACTTTTATTGTACTAGAAGTAATATTACTTGCACTT
C-TTAGCACATTATTTGTTTGTTTCATGCATGCATTGGTGTG-------CCCTGGTGAACCCATCT-------ATTGTCA
CGAACTTTTGCGTCAAGATGTTGTTCATAAGTAATAGGCAGCATTAACACAAATGCTGATGATTCTCTTTCATAGTTATT
GAGTGAATTTGCACCTATGGATGTAAAA--ATATCTGAATTTCTAA-AGAAGCTAATCAATAACTGAGGATTCCAGGTTT
CTAGCTGATCCCTTGTTGTATCTCAACTTCTGTATAGA--CAGTCAGACAGTGATGCTTATTTGAACTACATTTATTCGT
GCGTAGTAAAATAAAATAAAAATCTGCAGCAGAAAATGCTGCAATCGAACACTTCAAATTATTTAAGTATCTAATTCCCT
TAATTTAAATATTTCATGTACAACTG----------GGTTTCTAGGGTAGGTAGTTCAAAACCTGACACGGTAAAT--TG
TGCAGGTTATTGTGGGTGGGGTTGCAGCTGGTATCTGGGCTTACCAAAAGCATAGGCAAAGGACTAACGTTCACATTATG
GCTCTGAACCTTGTCCGAGGGGTTCCCCTGACTCCAAGGGAGAAGGAGACGATGATTGACATCCTTACGCCGCCTCCACT
AACTAGGAGATGGTGGTGGCCTATCAAGTGATGTTC----ATGTCCTCAGATGCAACATATAG----TACTA----ATTT
GCAGTGTTAGCATTATATGG-ATGATCAGGATGGCTGAATTTGGCGCATGATTT--------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>SNPs
SS-------S------------S---------------------------------------------------------
--------------------S-------------------SSSSSSSS--------------------------------
---S----S-------S---------------------------S-----------------------------------
--------------S-------------S-----S-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
--------------------------------------------------------------------------------
---------S------S--------------------S--------------------------------S---------
------------------------------------S--------S----------------------------------
S------------S--------------------------------------------------------------S---
-------------------S------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
-----------------------------------S------------------------S-SSSSSSSSSSSSSSS---
--------------------------------------------------------------------------------
--S------------------------------------------S-S---------S----------------------
-------S--------------------S---------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
---------------------S-------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
---------------S------------------------------S---------------------------------
---------------------------------------------S----------S-----------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S--S---------------------------------------------------SSSSSS----S--------
-------------S---SS--------S---------------SSSSSS--------S------S----S----------
-----------S-SS------S---SSSSS-----------------------S-S----S---S-SS----S-SSSSSS
-S-SSSSSSSSSSSSSSSSSSSSSSS-------S--------SS----------SSS--SSSS-SSSSSS----------
--------------------------------------------------------------------------------
------S-S----S---------S---------S---SSS-SSS--SS-SS--SSSSSS-SSSS--SSSSS-S-SSSS-S
SSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------S--S-
------S--------------------------------------SSSSSSSSSSSSS-SSSSSSSSS-----S------
---SSS--SSSSS-S-S-SSSS-SSS-SSS-SSS--SS-S-SS-SS-SSS-SS-S-SSSSSS-SSSSSS---SSSS--SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-----------------S------------S--S-
-SS-----S-----------------------SS-SSSSSSSS--SSSSSSS--S-SSSSS-SSSSSS--SS-SSSSSS-
SS-SSSSSSSS--S-S-S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-S-----------------------S-----SSSS---S--SS----SSSSSSSSSSSS--SSSSSSSSSSS------
------------------------------------------------S---------------------
>forward_757
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TTGGGACCAGCAAACCCTAC-------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_2890
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------CTGGTGGTGGCCTCTCAAAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_1998
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GAAGCTTCACGGCCTCACA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_3486
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------AGACATGGCATTGGCACAGA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
