Multiple sequence alignment - TraesCS4D01G318100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G318100 chr4D 100.000 3403 0 0 1 3403 482725570 482722168 0.000000e+00 6285.0
1 TraesCS4D01G318100 chr5A 83.380 1799 136 71 1649 3403 659840110 659841789 0.000000e+00 1515.0
2 TraesCS4D01G318100 chr5A 85.739 582 38 18 822 1387 659839323 659839875 1.060000e-159 573.0
3 TraesCS4D01G318100 chr5A 90.714 420 27 6 1 410 659838550 659838967 1.790000e-152 549.0
4 TraesCS4D01G318100 chr5A 94.643 56 3 0 586 641 659839016 659839071 1.680000e-13 87.9
5 TraesCS4D01G318100 chr4B 89.048 557 38 8 2060 2595 612327553 612326999 0.000000e+00 669.0
6 TraesCS4D01G318100 chr4B 90.728 453 41 1 2222 2674 612328073 612327622 1.350000e-168 603.0
7 TraesCS4D01G318100 chr4B 83.281 640 63 26 346 975 612331649 612331044 1.790000e-152 549.0
8 TraesCS4D01G318100 chr4B 91.146 384 23 6 1645 2018 612328665 612328283 8.420000e-141 510.0
9 TraesCS4D01G318100 chr4B 87.222 180 10 7 1063 1238 612330556 612330386 3.470000e-45 193.0
10 TraesCS4D01G318100 chr4B 87.662 154 10 4 58 208 612331920 612331773 1.620000e-38 171.0
11 TraesCS4D01G318100 chr4B 84.483 116 14 3 1247 1358 612329055 612328940 9.980000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G318100 chr4D 482722168 482725570 3402 True 6285.000000 6285 100.000000 1 3403 1 chr4D.!!$R1 3402
1 TraesCS4D01G318100 chr5A 659838550 659841789 3239 False 681.225000 1515 88.619000 1 3403 4 chr5A.!!$F1 3402
2 TraesCS4D01G318100 chr4B 612326999 612331920 4921 True 400.857143 669 87.652857 58 2674 7 chr4B.!!$R1 2616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 734 0.027455 TGACGCTGACGCTTTGTTTG 59.973 50.0 0.0 0.0 45.53 2.93 F
1376 3339 0.035739 AGGGTTTGGTAACGTCGCAT 59.964 50.0 0.0 0.0 42.51 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 4245 0.185901 TGCAAACAGGGCCTTCTTCT 59.814 50.0 1.32 0.0 0.0 2.85 R
2861 4925 0.107897 AACACCAACACGCACAGAGA 60.108 50.0 0.00 0.0 0.0 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.190118 GCTCCATTCCTCTGTTCTGTTTG 59.810 47.826 0.00 0.00 0.00 2.93
102 104 6.602803 TGACAAGCATATCCATGTGTATGTTT 59.397 34.615 13.14 11.27 33.74 2.83
103 105 7.772757 TGACAAGCATATCCATGTGTATGTTTA 59.227 33.333 12.84 1.42 32.37 2.01
125 127 2.262423 ACAGCTCAACTTGAGGAACC 57.738 50.000 18.53 3.95 44.43 3.62
145 147 0.111061 TGGAATGCAGCACCTTGAGT 59.889 50.000 0.00 0.00 0.00 3.41
203 208 1.903404 GGGGTGCACACAAGAAGGG 60.903 63.158 22.94 0.00 0.00 3.95
208 213 0.179020 TGCACACAAGAAGGGTCTGG 60.179 55.000 0.00 0.00 33.05 3.86
212 217 1.597742 CACAAGAAGGGTCTGGTGTG 58.402 55.000 3.49 0.00 46.86 3.82
222 227 0.458025 GTCTGGTGTGGCGCTACTAC 60.458 60.000 24.82 19.07 0.00 2.73
249 260 7.009179 AGATCTTCATCTGTAAGGTTTCACA 57.991 36.000 0.00 0.00 38.03 3.58
257 268 3.207778 TGTAAGGTTTCACAAGGGAACG 58.792 45.455 0.00 0.00 0.00 3.95
259 270 2.721425 AGGTTTCACAAGGGAACGAA 57.279 45.000 0.00 0.00 0.00 3.85
270 281 4.274950 ACAAGGGAACGAACTATTGTGTTG 59.725 41.667 0.00 0.00 30.20 3.33
340 357 6.098838 AGCTCATTGTTAGATGTGATGACCTA 59.901 38.462 0.00 0.00 0.00 3.08
414 451 3.181467 TGCTTGTTTTCCCAGTTTCCATG 60.181 43.478 0.00 0.00 0.00 3.66
415 452 3.069443 GCTTGTTTTCCCAGTTTCCATGA 59.931 43.478 0.00 0.00 0.00 3.07
416 453 4.797275 GCTTGTTTTCCCAGTTTCCATGAG 60.797 45.833 0.00 0.00 0.00 2.90
422 459 2.022195 CCCAGTTTCCATGAGCTGATG 58.978 52.381 6.14 6.14 0.00 3.07
424 461 1.063616 CAGTTTCCATGAGCTGATGCG 59.936 52.381 7.76 1.62 45.42 4.73
427 464 2.677836 GTTTCCATGAGCTGATGCGTTA 59.322 45.455 7.76 0.00 45.42 3.18
428 465 2.916702 TCCATGAGCTGATGCGTTAT 57.083 45.000 7.76 0.00 45.42 1.89
434 471 3.860641 TGAGCTGATGCGTTATTCAGAA 58.139 40.909 0.00 0.00 45.42 3.02
442 479 5.238432 TGATGCGTTATTCAGAACTTGTGTT 59.762 36.000 0.00 0.00 39.42 3.32
443 480 5.493133 TGCGTTATTCAGAACTTGTGTTT 57.507 34.783 0.00 0.00 36.39 2.83
448 485 7.513041 GCGTTATTCAGAACTTGTGTTTTGTTC 60.513 37.037 0.00 0.00 38.79 3.18
453 490 7.156876 TCAGAACTTGTGTTTTGTTCTCATT 57.843 32.000 4.84 0.00 45.67 2.57
454 491 8.275015 TCAGAACTTGTGTTTTGTTCTCATTA 57.725 30.769 4.84 0.00 45.67 1.90
460 497 8.952278 ACTTGTGTTTTGTTCTCATTAGTGTTA 58.048 29.630 0.00 0.00 0.00 2.41
477 514 9.672673 ATTAGTGTTAGCAAATGTATCAGTCTT 57.327 29.630 0.00 0.00 0.00 3.01
478 515 7.986085 AGTGTTAGCAAATGTATCAGTCTTT 57.014 32.000 0.00 0.00 0.00 2.52
480 517 9.502091 AGTGTTAGCAAATGTATCAGTCTTTTA 57.498 29.630 0.00 0.00 0.00 1.52
520 557 0.904649 TGTGGTATGCCTGTCTGGAG 59.095 55.000 0.16 0.00 38.35 3.86
528 565 1.222936 CCTGTCTGGAGGCACATCC 59.777 63.158 0.00 0.00 40.03 3.51
561 598 2.594303 CGGAGCAAACACTGGCCA 60.594 61.111 4.71 4.71 0.00 5.36
562 599 2.620112 CGGAGCAAACACTGGCCAG 61.620 63.158 31.60 31.60 0.00 4.85
563 600 2.270986 GGAGCAAACACTGGCCAGG 61.271 63.158 35.42 25.43 0.00 4.45
564 601 1.228245 GAGCAAACACTGGCCAGGA 60.228 57.895 35.42 0.00 0.00 3.86
565 602 0.823356 GAGCAAACACTGGCCAGGAA 60.823 55.000 35.42 0.00 0.00 3.36
566 603 0.178953 AGCAAACACTGGCCAGGAAT 60.179 50.000 35.42 18.13 0.00 3.01
573 610 0.329596 ACTGGCCAGGAATCAGGTTC 59.670 55.000 35.42 0.00 36.04 3.62
584 621 3.955471 GAATCAGGTTCCAGAATGTCCA 58.045 45.455 0.00 0.00 0.00 4.02
609 646 3.812053 AGCATATTCAGATTCTCGTTGGC 59.188 43.478 0.00 0.00 0.00 4.52
666 707 7.974501 TGTTATTTTTGTGTTAAGAAAAGGCGA 59.025 29.630 0.00 0.00 30.97 5.54
671 712 3.188460 TGTGTTAAGAAAAGGCGATGCTC 59.812 43.478 0.00 0.00 0.00 4.26
681 722 2.584418 CGATGCTCCCTGACGCTG 60.584 66.667 0.00 0.00 0.00 5.18
683 724 1.520342 GATGCTCCCTGACGCTGAC 60.520 63.158 0.00 0.00 0.00 3.51
687 728 3.288308 CTCCCTGACGCTGACGCTT 62.288 63.158 0.00 0.00 45.53 4.68
688 729 2.357517 CCCTGACGCTGACGCTTT 60.358 61.111 0.00 0.00 45.53 3.51
689 730 2.671177 CCCTGACGCTGACGCTTTG 61.671 63.158 0.00 0.00 45.53 2.77
690 731 1.956170 CCTGACGCTGACGCTTTGT 60.956 57.895 0.00 0.00 45.53 2.83
691 732 1.498865 CCTGACGCTGACGCTTTGTT 61.499 55.000 0.00 0.00 45.53 2.83
692 733 0.304705 CTGACGCTGACGCTTTGTTT 59.695 50.000 0.00 0.00 45.53 2.83
693 734 0.027455 TGACGCTGACGCTTTGTTTG 59.973 50.000 0.00 0.00 45.53 2.93
694 735 1.262166 GACGCTGACGCTTTGTTTGC 61.262 55.000 0.00 0.00 45.53 3.68
695 736 1.009675 CGCTGACGCTTTGTTTGCT 60.010 52.632 0.00 0.00 0.00 3.91
696 737 0.234625 CGCTGACGCTTTGTTTGCTA 59.765 50.000 0.00 0.00 0.00 3.49
697 738 1.674908 GCTGACGCTTTGTTTGCTAC 58.325 50.000 0.00 0.00 0.00 3.58
698 739 1.264288 GCTGACGCTTTGTTTGCTACT 59.736 47.619 0.00 0.00 0.00 2.57
699 740 2.908634 CTGACGCTTTGTTTGCTACTG 58.091 47.619 0.00 0.00 0.00 2.74
700 741 1.601903 TGACGCTTTGTTTGCTACTGG 59.398 47.619 0.00 0.00 0.00 4.00
701 742 1.602377 GACGCTTTGTTTGCTACTGGT 59.398 47.619 0.00 0.00 0.00 4.00
702 743 2.803956 GACGCTTTGTTTGCTACTGGTA 59.196 45.455 0.00 0.00 0.00 3.25
715 756 3.430929 GCTACTGGTACATCTCCAAGTGG 60.431 52.174 0.00 0.00 38.20 4.00
720 761 4.843728 TGGTACATCTCCAAGTGGAAATC 58.156 43.478 0.89 0.00 44.91 2.17
726 767 4.722526 TCTCCAAGTGGAAATCCTTGAA 57.277 40.909 0.89 0.00 44.91 2.69
727 768 5.060427 TCTCCAAGTGGAAATCCTTGAAA 57.940 39.130 0.89 0.00 44.91 2.69
760 801 4.738740 CACTCGTTAGGTCGGAATTCATAC 59.261 45.833 7.93 4.40 0.00 2.39
932 1132 1.385756 GGAGCTGGACCGACTAGACC 61.386 65.000 0.00 0.00 0.00 3.85
1146 1761 4.221422 AGGTGCGCGCCGTATGAT 62.221 61.111 32.68 13.04 0.00 2.45
1147 1762 4.000557 GGTGCGCGCCGTATGATG 62.001 66.667 30.77 0.00 0.00 3.07
1148 1763 4.649954 GTGCGCGCCGTATGATGC 62.650 66.667 30.77 3.38 0.00 3.91
1149 1764 4.889856 TGCGCGCCGTATGATGCT 62.890 61.111 30.77 0.00 0.00 3.79
1150 1765 4.064491 GCGCGCCGTATGATGCTC 62.064 66.667 23.24 0.00 0.00 4.26
1151 1766 2.355126 CGCGCCGTATGATGCTCT 60.355 61.111 0.00 0.00 0.00 4.09
1181 1800 1.446366 CCCTTCCTTACCCTAGCGC 59.554 63.158 0.00 0.00 0.00 5.92
1190 1809 1.978454 TACCCTAGCGCTCCTTCTAC 58.022 55.000 16.34 0.00 0.00 2.59
1228 1847 4.709250 GGAAGACAGGGAAATACCATCTC 58.291 47.826 0.00 0.00 41.20 2.75
1238 1857 6.071278 AGGGAAATACCATCTCGATTAGTAGC 60.071 42.308 0.00 0.00 41.20 3.58
1241 1860 8.688151 GGAAATACCATCTCGATTAGTAGCTAT 58.312 37.037 0.00 0.00 38.79 2.97
1252 3193 5.644206 CGATTAGTAGCTATGCTCTACTCCA 59.356 44.000 0.00 0.00 43.92 3.86
1255 3196 2.461300 AGCTATGCTCTACTCCACCA 57.539 50.000 0.00 0.00 30.62 4.17
1319 3264 0.808755 CCCCATTTTGTCACTACGGC 59.191 55.000 0.00 0.00 0.00 5.68
1339 3288 2.360585 CAGGGGAAGAAAGGGGGC 59.639 66.667 0.00 0.00 0.00 5.80
1360 3309 1.686052 GGAGCTCTGTGATCTGTAGGG 59.314 57.143 14.64 0.00 0.00 3.53
1368 3331 4.841813 TCTGTGATCTGTAGGGTTTGGTAA 59.158 41.667 0.00 0.00 0.00 2.85
1369 3332 4.901868 TGTGATCTGTAGGGTTTGGTAAC 58.098 43.478 0.00 0.00 0.00 2.50
1372 3335 3.665745 TCTGTAGGGTTTGGTAACGTC 57.334 47.619 0.00 0.00 42.51 4.34
1376 3339 0.035739 AGGGTTTGGTAACGTCGCAT 59.964 50.000 0.00 0.00 42.51 4.73
1388 3351 3.991605 ACGTCGCATAAATGAACTGAC 57.008 42.857 0.00 0.00 0.00 3.51
1392 3355 4.268644 CGTCGCATAAATGAACTGACAGAT 59.731 41.667 10.08 0.00 0.00 2.90
1396 3359 5.740569 CGCATAAATGAACTGACAGATTTGG 59.259 40.000 10.08 3.95 0.00 3.28
1401 3364 1.197721 GAACTGACAGATTTGGCCACG 59.802 52.381 3.88 0.00 0.00 4.94
1406 3369 2.290008 TGACAGATTTGGCCACGTATGT 60.290 45.455 14.73 14.73 0.00 2.29
1408 3371 3.936453 GACAGATTTGGCCACGTATGTTA 59.064 43.478 3.88 0.00 0.00 2.41
1409 3372 3.938963 ACAGATTTGGCCACGTATGTTAG 59.061 43.478 3.88 0.00 0.00 2.34
1410 3373 3.312421 CAGATTTGGCCACGTATGTTAGG 59.688 47.826 3.88 0.00 0.00 2.69
1419 3408 0.928229 CGTATGTTAGGCGGTCTTGC 59.072 55.000 0.00 0.00 0.00 4.01
1475 3464 2.521105 TCATGATGCATCGAGGTCAG 57.479 50.000 21.34 6.38 0.00 3.51
1478 3468 1.185315 TGATGCATCGAGGTCAGTCA 58.815 50.000 21.34 0.00 0.00 3.41
1479 3469 1.135721 TGATGCATCGAGGTCAGTCAG 59.864 52.381 21.34 0.00 0.00 3.51
1480 3470 1.135915 GATGCATCGAGGTCAGTCAGT 59.864 52.381 11.68 0.00 0.00 3.41
1481 3471 0.528017 TGCATCGAGGTCAGTCAGTC 59.472 55.000 0.00 0.00 0.00 3.51
1482 3472 0.528017 GCATCGAGGTCAGTCAGTCA 59.472 55.000 0.00 0.00 0.00 3.41
1483 3473 1.468908 GCATCGAGGTCAGTCAGTCAG 60.469 57.143 0.00 0.00 0.00 3.51
1484 3474 1.815613 CATCGAGGTCAGTCAGTCAGT 59.184 52.381 0.00 0.00 0.00 3.41
1485 3475 1.524848 TCGAGGTCAGTCAGTCAGTC 58.475 55.000 0.00 0.00 0.00 3.51
1486 3476 1.202770 TCGAGGTCAGTCAGTCAGTCA 60.203 52.381 0.00 0.00 0.00 3.41
1516 3511 1.836802 ATACCTAGCGGGCTAGTAGC 58.163 55.000 22.34 14.09 43.22 3.58
1521 3516 2.224305 CCTAGCGGGCTAGTAGCATTTT 60.224 50.000 23.24 8.75 44.75 1.82
1527 3522 4.319549 GCGGGCTAGTAGCATTTTGTATTC 60.320 45.833 23.24 2.13 44.75 1.75
1581 3577 6.932356 TCATAGAATGCCTTGAGAAATGAC 57.068 37.500 0.00 0.00 0.00 3.06
1593 3589 3.822735 TGAGAAATGACTCAAGGCAAAGG 59.177 43.478 0.00 0.00 42.79 3.11
1595 3591 4.473444 AGAAATGACTCAAGGCAAAGGAA 58.527 39.130 0.00 0.00 0.00 3.36
1597 3593 5.541484 AGAAATGACTCAAGGCAAAGGAATT 59.459 36.000 0.00 0.00 0.00 2.17
1599 3595 5.813513 ATGACTCAAGGCAAAGGAATTTT 57.186 34.783 0.00 0.00 0.00 1.82
1600 3596 5.612725 TGACTCAAGGCAAAGGAATTTTT 57.387 34.783 0.00 0.00 0.00 1.94
1601 3597 5.600696 TGACTCAAGGCAAAGGAATTTTTC 58.399 37.500 0.00 0.00 0.00 2.29
1602 3598 5.363580 TGACTCAAGGCAAAGGAATTTTTCT 59.636 36.000 0.00 0.00 0.00 2.52
1603 3599 5.604565 ACTCAAGGCAAAGGAATTTTTCTG 58.395 37.500 0.00 0.00 0.00 3.02
1604 3600 5.363580 ACTCAAGGCAAAGGAATTTTTCTGA 59.636 36.000 0.00 0.00 0.00 3.27
1605 3601 6.127083 ACTCAAGGCAAAGGAATTTTTCTGAA 60.127 34.615 0.00 0.00 0.00 3.02
1606 3602 6.829849 TCAAGGCAAAGGAATTTTTCTGAAT 58.170 32.000 0.00 0.00 0.00 2.57
1608 3604 6.676990 AGGCAAAGGAATTTTTCTGAATCT 57.323 33.333 0.00 0.00 0.00 2.40
1609 3605 7.781324 AGGCAAAGGAATTTTTCTGAATCTA 57.219 32.000 0.00 0.00 0.00 1.98
1610 3606 7.834803 AGGCAAAGGAATTTTTCTGAATCTAG 58.165 34.615 0.00 0.00 0.00 2.43
1611 3607 7.671398 AGGCAAAGGAATTTTTCTGAATCTAGA 59.329 33.333 0.00 0.00 0.00 2.43
1612 3608 8.306761 GGCAAAGGAATTTTTCTGAATCTAGAA 58.693 33.333 0.00 0.00 35.02 2.10
1613 3609 9.696917 GCAAAGGAATTTTTCTGAATCTAGAAA 57.303 29.630 0.00 0.00 43.02 2.52
1641 3637 9.975218 AAAATATGGTAGGATTGACTTTACAGT 57.025 29.630 0.00 0.00 35.17 3.55
1642 3638 8.964476 AATATGGTAGGATTGACTTTACAGTG 57.036 34.615 0.00 0.00 31.22 3.66
1643 3639 6.620877 ATGGTAGGATTGACTTTACAGTGA 57.379 37.500 0.00 0.00 31.22 3.41
1667 3663 9.609346 TGAAAAGTAGGAATTAGTATAAGTGCC 57.391 33.333 0.00 0.00 0.00 5.01
1668 3664 8.658499 AAAAGTAGGAATTAGTATAAGTGCCG 57.342 34.615 0.00 0.00 0.00 5.69
1676 3672 1.692519 AGTATAAGTGCCGTCCCCATC 59.307 52.381 0.00 0.00 0.00 3.51
1703 3699 0.323178 ATGGGCTTTCTGCTGACCAG 60.323 55.000 6.77 1.80 43.17 4.00
1797 3793 2.509931 TAGACCACGGTGGAGGGAGG 62.510 65.000 32.72 5.48 40.96 4.30
1818 3814 0.701303 GCACGTTACTGTTCGTCTCG 59.299 55.000 7.52 0.00 38.23 4.04
1991 4002 3.689161 GGCTTTGCAAAATTGGGATAACC 59.311 43.478 13.84 0.00 40.81 2.85
2018 4029 5.886960 ACTGCAAAAGAATCACCTACATC 57.113 39.130 0.00 0.00 0.00 3.06
2024 4075 8.318412 TGCAAAAGAATCACCTACATCTACTTA 58.682 33.333 0.00 0.00 0.00 2.24
2025 4076 8.604890 GCAAAAGAATCACCTACATCTACTTAC 58.395 37.037 0.00 0.00 0.00 2.34
2049 4100 2.440539 ACTTGAGTCGTGACATGGTC 57.559 50.000 2.44 0.00 0.00 4.02
2052 4103 0.671796 TGAGTCGTGACATGGTCGTT 59.328 50.000 2.44 0.00 34.95 3.85
2079 4130 1.238439 CCCATATGGCATCGGTTGTC 58.762 55.000 16.97 0.00 0.00 3.18
2080 4131 1.202806 CCCATATGGCATCGGTTGTCT 60.203 52.381 16.97 0.00 0.00 3.41
2088 4139 2.627945 GCATCGGTTGTCTCCATGTTA 58.372 47.619 0.00 0.00 0.00 2.41
2104 4155 4.220382 CCATGTTAAGTGAATTGGCAAGGA 59.780 41.667 5.96 0.00 0.00 3.36
2116 4167 2.827755 TGGCAAGGACACCTATCTGTA 58.172 47.619 0.00 0.00 31.13 2.74
2131 4182 7.446931 CACCTATCTGTATATCACTCTCACTGT 59.553 40.741 0.00 0.00 0.00 3.55
2158 4209 0.704076 TGCAGGCATCCTTACCCTTT 59.296 50.000 0.00 0.00 0.00 3.11
2174 4225 3.897505 ACCCTTTGTCAAGAAATTCTGGG 59.102 43.478 9.86 9.86 37.08 4.45
2189 4240 1.144708 TCTGGGTGGTTTGAGAATGCA 59.855 47.619 0.00 0.00 0.00 3.96
2190 4241 1.962807 CTGGGTGGTTTGAGAATGCAA 59.037 47.619 0.00 0.00 0.00 4.08
2194 4245 3.431486 GGGTGGTTTGAGAATGCAACAAA 60.431 43.478 0.00 0.00 0.00 2.83
2201 4252 6.199719 GGTTTGAGAATGCAACAAAGAAGAAG 59.800 38.462 10.38 0.00 34.86 2.85
2204 4255 3.006217 AGAATGCAACAAAGAAGAAGGCC 59.994 43.478 0.00 0.00 0.00 5.19
2219 4270 0.333993 AGGCCCTGTTTGCATCAGAT 59.666 50.000 17.35 2.43 35.20 2.90
2220 4271 1.188863 GGCCCTGTTTGCATCAGATT 58.811 50.000 17.35 0.00 35.20 2.40
2225 4276 3.128242 CCCTGTTTGCATCAGATTCAGAC 59.872 47.826 17.35 0.00 35.20 3.51
2228 4279 4.903054 TGTTTGCATCAGATTCAGACTCT 58.097 39.130 5.52 0.00 0.00 3.24
2264 4315 1.027357 CAAAACAGAGCAGCACTGGT 58.973 50.000 22.10 14.49 44.89 4.00
2320 4371 0.034863 ACCATTTTGGCCGGTATCGT 60.035 50.000 1.90 0.00 42.67 3.73
2321 4372 0.661020 CCATTTTGGCCGGTATCGTC 59.339 55.000 1.90 0.00 33.95 4.20
2330 4381 1.986698 CCGGTATCGTCGTGTTCTTT 58.013 50.000 0.00 0.00 33.95 2.52
2369 4420 2.036475 CGGATCGATCTTCACCTGGATT 59.964 50.000 23.96 0.00 0.00 3.01
2458 4509 9.436957 CCTTTTCAGTTGTATATACACTTGTCT 57.563 33.333 15.20 6.51 35.64 3.41
2460 4511 9.990360 TTTTCAGTTGTATATACACTTGTCTCA 57.010 29.630 15.20 0.00 35.64 3.27
2561 4612 4.154015 TCACATGTTTCTAGCCAAATGTCG 59.846 41.667 0.00 0.00 0.00 4.35
2567 4618 3.179443 TCTAGCCAAATGTCGTGGATC 57.821 47.619 0.00 0.00 38.54 3.36
2572 4623 1.438651 CAAATGTCGTGGATCACCGT 58.561 50.000 0.00 0.00 39.42 4.83
2603 4655 6.992715 ACGCTGTTATTTCTAGCCATATCTTT 59.007 34.615 0.00 0.00 34.02 2.52
2642 4694 5.049405 AGTGCTGTTATTTTGGAGAAAGACG 60.049 40.000 0.00 0.00 0.00 4.18
2670 4722 5.468746 CCTGTGTTCGTTCCATTTCTTCTTA 59.531 40.000 0.00 0.00 0.00 2.10
2682 4734 0.318441 TCTTCTTAGCTGCTGCGTGT 59.682 50.000 13.43 0.00 45.42 4.49
2717 4777 0.931662 GCCAGATTATTGCAAGCGCG 60.932 55.000 4.94 0.00 42.97 6.86
2726 4786 0.598942 TTGCAAGCGCGTAGACTTCA 60.599 50.000 8.43 0.65 42.97 3.02
2727 4787 0.598942 TGCAAGCGCGTAGACTTCAA 60.599 50.000 8.43 0.00 42.97 2.69
2735 4795 3.302870 GCGCGTAGACTTCAACTTTTTCA 60.303 43.478 8.43 0.00 0.00 2.69
2758 4818 2.768253 TGATGAGGTGCAATCGAACT 57.232 45.000 0.00 0.00 0.00 3.01
2803 4867 7.900782 TTACCTGAACTTAGTTACTGCAATC 57.099 36.000 0.00 0.00 0.00 2.67
2804 4868 5.865085 ACCTGAACTTAGTTACTGCAATCA 58.135 37.500 0.00 0.00 0.00 2.57
2805 4869 6.296026 ACCTGAACTTAGTTACTGCAATCAA 58.704 36.000 0.00 0.00 0.00 2.57
2806 4870 6.942576 ACCTGAACTTAGTTACTGCAATCAAT 59.057 34.615 0.00 0.00 0.00 2.57
2807 4871 7.094634 ACCTGAACTTAGTTACTGCAATCAATG 60.095 37.037 0.00 0.00 0.00 2.82
2808 4872 7.094634 CCTGAACTTAGTTACTGCAATCAATGT 60.095 37.037 0.00 0.00 0.00 2.71
2809 4873 7.806690 TGAACTTAGTTACTGCAATCAATGTC 58.193 34.615 0.00 0.00 0.00 3.06
2810 4874 7.443879 TGAACTTAGTTACTGCAATCAATGTCA 59.556 33.333 0.00 0.00 0.00 3.58
2812 4876 7.755591 ACTTAGTTACTGCAATCAATGTCATG 58.244 34.615 0.00 0.00 0.00 3.07
2813 4877 4.990257 AGTTACTGCAATCAATGTCATGC 58.010 39.130 0.00 0.00 39.22 4.06
2814 4878 2.953466 ACTGCAATCAATGTCATGCC 57.047 45.000 0.00 0.00 38.00 4.40
2815 4879 2.453521 ACTGCAATCAATGTCATGCCT 58.546 42.857 0.00 0.00 38.00 4.75
2816 4880 3.623703 ACTGCAATCAATGTCATGCCTA 58.376 40.909 0.00 0.00 38.00 3.93
2817 4881 3.630769 ACTGCAATCAATGTCATGCCTAG 59.369 43.478 0.00 0.00 38.00 3.02
2818 4882 3.881089 CTGCAATCAATGTCATGCCTAGA 59.119 43.478 0.00 0.00 38.00 2.43
2819 4883 4.466827 TGCAATCAATGTCATGCCTAGAT 58.533 39.130 0.00 0.00 38.00 1.98
2820 4884 4.277423 TGCAATCAATGTCATGCCTAGATG 59.723 41.667 0.00 0.00 38.00 2.90
2821 4885 4.795268 CAATCAATGTCATGCCTAGATGC 58.205 43.478 0.00 0.00 0.00 3.91
2822 4886 3.564053 TCAATGTCATGCCTAGATGCA 57.436 42.857 0.00 0.00 46.94 3.96
2823 4887 3.208594 TCAATGTCATGCCTAGATGCAC 58.791 45.455 0.00 0.00 45.48 4.57
2824 4888 2.267174 ATGTCATGCCTAGATGCACC 57.733 50.000 0.00 0.00 45.48 5.01
2825 4889 0.911053 TGTCATGCCTAGATGCACCA 59.089 50.000 0.00 0.00 45.48 4.17
2826 4890 1.134310 TGTCATGCCTAGATGCACCAG 60.134 52.381 0.00 0.00 45.48 4.00
2827 4891 1.134280 GTCATGCCTAGATGCACCAGT 60.134 52.381 0.00 0.00 45.48 4.00
2828 4892 2.103094 GTCATGCCTAGATGCACCAGTA 59.897 50.000 0.00 0.00 45.48 2.74
2829 4893 2.103094 TCATGCCTAGATGCACCAGTAC 59.897 50.000 0.00 0.00 45.48 2.73
2830 4894 1.567357 TGCCTAGATGCACCAGTACA 58.433 50.000 0.00 0.00 36.04 2.90
2831 4895 1.482182 TGCCTAGATGCACCAGTACAG 59.518 52.381 0.00 0.00 36.04 2.74
2832 4896 1.202580 GCCTAGATGCACCAGTACAGG 60.203 57.143 2.14 2.14 0.00 4.00
2833 4897 1.202580 CCTAGATGCACCAGTACAGGC 60.203 57.143 3.83 0.00 0.00 4.85
2834 4898 0.459899 TAGATGCACCAGTACAGGCG 59.540 55.000 3.83 0.00 0.00 5.52
2835 4899 1.218047 GATGCACCAGTACAGGCGA 59.782 57.895 3.83 0.00 0.00 5.54
2836 4900 0.179073 GATGCACCAGTACAGGCGAT 60.179 55.000 3.83 0.00 0.00 4.58
2837 4901 0.462581 ATGCACCAGTACAGGCGATG 60.463 55.000 3.83 0.00 0.00 3.84
2838 4902 1.815421 GCACCAGTACAGGCGATGG 60.815 63.158 3.83 0.00 38.83 3.51
2839 4903 1.815421 CACCAGTACAGGCGATGGC 60.815 63.158 3.83 0.00 36.21 4.40
2840 4904 2.290287 ACCAGTACAGGCGATGGCA 61.290 57.895 3.83 0.00 42.47 4.92
2841 4905 1.146930 CCAGTACAGGCGATGGCAT 59.853 57.895 0.00 0.00 42.47 4.40
2861 4925 2.490165 GCTGATGCAGGCTGTCATT 58.510 52.632 17.16 5.23 39.41 2.57
2862 4926 0.381089 GCTGATGCAGGCTGTCATTC 59.619 55.000 17.16 13.02 39.41 2.67
2863 4927 2.017623 GCTGATGCAGGCTGTCATTCT 61.018 52.381 17.16 0.02 39.41 2.40
2865 4929 1.558294 TGATGCAGGCTGTCATTCTCT 59.442 47.619 17.16 0.00 0.00 3.10
2870 4942 0.390866 AGGCTGTCATTCTCTGTGCG 60.391 55.000 0.00 0.00 0.00 5.34
2898 4970 3.810941 GTGTTTGGATTGTCACCGAAGTA 59.189 43.478 0.00 0.00 32.25 2.24
2906 4978 4.713824 TTGTCACCGAAGTACATCCTAG 57.286 45.455 0.00 0.00 0.00 3.02
2907 4979 3.021695 TGTCACCGAAGTACATCCTAGG 58.978 50.000 0.82 0.82 0.00 3.02
2908 4980 3.285484 GTCACCGAAGTACATCCTAGGA 58.715 50.000 15.46 15.46 0.00 2.94
2909 4981 3.698040 GTCACCGAAGTACATCCTAGGAA 59.302 47.826 17.30 0.00 0.00 3.36
2910 4982 4.341520 GTCACCGAAGTACATCCTAGGAAT 59.658 45.833 17.30 9.90 0.00 3.01
2911 4983 4.960469 TCACCGAAGTACATCCTAGGAATT 59.040 41.667 17.30 8.18 0.00 2.17
2912 4984 5.068723 TCACCGAAGTACATCCTAGGAATTC 59.931 44.000 17.30 13.35 0.00 2.17
2913 4985 5.069251 CACCGAAGTACATCCTAGGAATTCT 59.931 44.000 17.30 7.61 0.00 2.40
2914 4986 5.661759 ACCGAAGTACATCCTAGGAATTCTT 59.338 40.000 17.30 15.52 0.00 2.52
2915 4987 6.156429 ACCGAAGTACATCCTAGGAATTCTTT 59.844 38.462 17.30 8.17 0.00 2.52
2916 4988 6.480320 CCGAAGTACATCCTAGGAATTCTTTG 59.520 42.308 17.30 17.60 0.00 2.77
2917 4989 6.480320 CGAAGTACATCCTAGGAATTCTTTGG 59.520 42.308 17.30 11.09 0.00 3.28
2918 4990 6.893020 AGTACATCCTAGGAATTCTTTGGT 57.107 37.500 17.30 6.73 0.00 3.67
2919 4991 6.890293 AGTACATCCTAGGAATTCTTTGGTC 58.110 40.000 17.30 6.06 0.00 4.02
2920 4992 5.779241 ACATCCTAGGAATTCTTTGGTCA 57.221 39.130 17.30 0.87 0.00 4.02
2921 4993 6.332976 ACATCCTAGGAATTCTTTGGTCAT 57.667 37.500 17.30 2.98 0.00 3.06
2922 4994 6.125029 ACATCCTAGGAATTCTTTGGTCATG 58.875 40.000 17.30 14.67 0.00 3.07
2923 4995 5.116084 TCCTAGGAATTCTTTGGTCATGG 57.884 43.478 9.71 1.56 0.00 3.66
2924 4996 3.633986 CCTAGGAATTCTTTGGTCATGGC 59.366 47.826 1.05 0.00 0.00 4.40
2929 5001 1.988293 TTCTTTGGTCATGGCCGAAA 58.012 45.000 19.63 15.12 31.94 3.46
2930 5002 1.243902 TCTTTGGTCATGGCCGAAAC 58.756 50.000 19.63 0.00 31.94 2.78
2931 5003 0.958091 CTTTGGTCATGGCCGAAACA 59.042 50.000 19.63 0.00 31.94 2.83
2933 5005 1.626686 TTGGTCATGGCCGAAACATT 58.373 45.000 12.67 0.00 0.00 2.71
2935 5007 0.173255 GGTCATGGCCGAAACATTGG 59.827 55.000 0.00 0.00 0.00 3.16
2936 5008 0.887933 GTCATGGCCGAAACATTGGT 59.112 50.000 0.00 0.00 0.00 3.67
2939 5011 0.608035 ATGGCCGAAACATTGGTCGT 60.608 50.000 0.00 0.00 35.48 4.34
2944 5016 1.404477 CGAAACATTGGTCGTTTGCC 58.596 50.000 0.00 0.00 36.72 4.52
2954 5026 4.433186 TGGTCGTTTGCCTTTTGATATG 57.567 40.909 0.00 0.00 0.00 1.78
2958 5030 4.095782 GTCGTTTGCCTTTTGATATGCCTA 59.904 41.667 0.00 0.00 0.00 3.93
2959 5031 4.095782 TCGTTTGCCTTTTGATATGCCTAC 59.904 41.667 0.00 0.00 0.00 3.18
2963 5035 3.318839 TGCCTTTTGATATGCCTACATGC 59.681 43.478 0.00 0.00 37.04 4.06
2980 5052 0.597568 TGCCAATGCTCTTTTGACGG 59.402 50.000 0.00 0.00 38.71 4.79
2981 5053 0.881118 GCCAATGCTCTTTTGACGGA 59.119 50.000 0.00 0.00 33.53 4.69
2982 5054 1.474077 GCCAATGCTCTTTTGACGGAT 59.526 47.619 0.00 0.00 33.53 4.18
2984 5056 3.012518 CCAATGCTCTTTTGACGGATCT 58.987 45.455 0.00 0.00 0.00 2.75
2995 5067 7.806690 TCTTTTGACGGATCTAGTTCATTTTG 58.193 34.615 3.30 0.00 0.00 2.44
2997 5069 6.721571 TTGACGGATCTAGTTCATTTTGTC 57.278 37.500 3.30 3.76 0.00 3.18
3013 5085 1.375908 GTCGAGCTGATGTTGGCCA 60.376 57.895 0.00 0.00 0.00 5.36
3014 5086 0.955428 GTCGAGCTGATGTTGGCCAA 60.955 55.000 16.05 16.05 0.00 4.52
3036 5108 0.815734 CATGGCAAGGGAAAGCTCAG 59.184 55.000 0.00 0.00 0.00 3.35
3037 5109 0.407139 ATGGCAAGGGAAAGCTCAGT 59.593 50.000 0.00 0.00 0.00 3.41
3038 5110 0.250901 TGGCAAGGGAAAGCTCAGTC 60.251 55.000 0.00 0.00 0.00 3.51
3044 5116 4.218417 GCAAGGGAAAGCTCAGTCAAAATA 59.782 41.667 0.00 0.00 0.00 1.40
3082 5177 2.477176 GGCACGAACCAAGCACACA 61.477 57.895 0.00 0.00 0.00 3.72
3085 5180 1.078072 ACGAACCAAGCACACACCA 60.078 52.632 0.00 0.00 0.00 4.17
3087 5182 1.095228 CGAACCAAGCACACACCAGT 61.095 55.000 0.00 0.00 0.00 4.00
3097 5192 3.085208 CACACCAGTGCTTGTGAGT 57.915 52.632 14.88 0.00 45.03 3.41
3108 5203 1.933853 GCTTGTGAGTTGTGACGTCTT 59.066 47.619 17.92 0.00 0.00 3.01
3116 5211 4.056050 GAGTTGTGACGTCTTTGTACCAT 58.944 43.478 17.92 0.00 0.00 3.55
3149 5244 1.806542 ACTCGATCATTGTGTTGGCAC 59.193 47.619 0.00 0.00 45.44 5.01
3172 5267 0.107848 CCTCCTCGCCCGTGTTTATT 60.108 55.000 0.00 0.00 0.00 1.40
3176 5271 1.931172 CCTCGCCCGTGTTTATTACTG 59.069 52.381 0.00 0.00 0.00 2.74
3177 5272 2.613691 CTCGCCCGTGTTTATTACTGT 58.386 47.619 0.00 0.00 0.00 3.55
3179 5274 3.510719 TCGCCCGTGTTTATTACTGTAC 58.489 45.455 0.00 0.00 0.00 2.90
3182 5277 3.189285 CCCGTGTTTATTACTGTACCCG 58.811 50.000 0.00 0.00 0.00 5.28
3190 5285 1.999048 TTACTGTACCCGCAACGATG 58.001 50.000 0.00 0.00 0.00 3.84
3201 5296 1.390123 CGCAACGATGTGTACTTGGAG 59.610 52.381 0.00 0.00 32.29 3.86
3220 5315 3.041874 CAGAGTTACTCGCCTGCAG 57.958 57.895 6.78 6.78 35.36 4.41
3221 5316 0.528017 CAGAGTTACTCGCCTGCAGA 59.472 55.000 17.39 0.00 35.36 4.26
3222 5317 0.814457 AGAGTTACTCGCCTGCAGAG 59.186 55.000 17.39 7.68 41.27 3.35
3223 5318 0.811915 GAGTTACTCGCCTGCAGAGA 59.188 55.000 17.39 13.27 38.97 3.10
3224 5319 0.814457 AGTTACTCGCCTGCAGAGAG 59.186 55.000 26.79 26.79 38.97 3.20
3225 5320 0.179124 GTTACTCGCCTGCAGAGAGG 60.179 60.000 29.60 13.27 38.97 3.69
3226 5321 0.612174 TTACTCGCCTGCAGAGAGGT 60.612 55.000 29.60 21.26 38.97 3.85
3227 5322 0.255033 TACTCGCCTGCAGAGAGGTA 59.745 55.000 29.60 20.58 38.97 3.08
3228 5323 1.316706 ACTCGCCTGCAGAGAGGTAC 61.317 60.000 29.60 8.00 38.97 3.34
3230 5325 2.496817 GCCTGCAGAGAGGTACCG 59.503 66.667 17.39 0.00 35.29 4.02
3231 5326 2.496817 CCTGCAGAGAGGTACCGC 59.503 66.667 17.39 7.70 0.00 5.68
3233 5328 3.417275 CTGCAGAGAGGTACCGCCG 62.417 68.421 8.42 2.53 43.70 6.46
3258 5353 2.435938 ACGGGGCAAGTATGTGCG 60.436 61.111 0.00 0.00 45.91 5.34
3259 5354 2.435938 CGGGGCAAGTATGTGCGT 60.436 61.111 0.00 0.00 45.91 5.24
3260 5355 1.153529 CGGGGCAAGTATGTGCGTA 60.154 57.895 0.00 0.00 45.91 4.42
3261 5356 1.426041 CGGGGCAAGTATGTGCGTAC 61.426 60.000 0.00 0.00 45.91 3.67
3262 5357 0.107848 GGGGCAAGTATGTGCGTACT 60.108 55.000 4.97 0.00 45.91 2.73
3264 5359 0.921347 GGCAAGTATGTGCGTACTCG 59.079 55.000 4.97 0.00 45.91 4.18
3331 5549 2.293122 GCTGTCATTTATTATGCCGGCA 59.707 45.455 34.80 34.80 0.00 5.69
3368 5587 3.781307 CGGCCTGAATCCCGTGGA 61.781 66.667 0.00 0.00 39.67 4.02
3369 5588 2.919043 GGCCTGAATCCCGTGGAT 59.081 61.111 0.00 0.05 45.46 3.41
3371 5590 1.526917 GCCTGAATCCCGTGGATGG 60.527 63.158 6.24 5.20 42.27 3.51
3372 5591 1.983119 GCCTGAATCCCGTGGATGGA 61.983 60.000 6.24 0.00 42.27 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 93 8.792830 AGTTGAGCTGTATTAAACATACACAT 57.207 30.769 0.00 0.00 37.50 3.21
93 95 8.717821 TCAAGTTGAGCTGTATTAAACATACAC 58.282 33.333 0.08 0.00 37.50 2.90
102 104 5.248477 AGGTTCCTCAAGTTGAGCTGTATTA 59.752 40.000 24.85 4.09 42.98 0.98
103 105 4.042187 AGGTTCCTCAAGTTGAGCTGTATT 59.958 41.667 24.85 7.57 42.98 1.89
125 127 0.809385 CTCAAGGTGCTGCATTCCAG 59.191 55.000 5.27 0.65 44.67 3.86
145 147 1.260561 GCGTCGAAGCTTGTTGAGAAA 59.739 47.619 16.42 0.00 0.00 2.52
187 192 0.179018 AGACCCTTCTTGTGTGCACC 60.179 55.000 15.69 6.37 0.00 5.01
203 208 0.458025 GTAGTAGCGCCACACCAGAC 60.458 60.000 9.06 0.00 0.00 3.51
232 243 4.651778 TCCCTTGTGAAACCTTACAGATG 58.348 43.478 0.00 0.00 34.36 2.90
237 248 3.469739 TCGTTCCCTTGTGAAACCTTAC 58.530 45.455 0.00 0.00 34.36 2.34
249 260 3.252458 GCAACACAATAGTTCGTTCCCTT 59.748 43.478 0.00 0.00 0.00 3.95
257 268 3.592059 TCTACGGGCAACACAATAGTTC 58.408 45.455 0.00 0.00 39.74 3.01
259 270 2.093658 CCTCTACGGGCAACACAATAGT 60.094 50.000 0.00 0.00 39.74 2.12
284 295 3.705072 ACAGATACAGGTAGCCCTTACAC 59.295 47.826 0.00 0.00 39.89 2.90
340 357 0.539669 GCACAGGGCTACCAAACCTT 60.540 55.000 0.00 0.00 40.13 3.50
362 396 8.492748 TCTTCTATTTGTTTGTTAGCTACAACG 58.507 33.333 0.00 0.00 46.09 4.10
388 425 4.262592 GGAAACTGGGAAAACAAGCATGAT 60.263 41.667 0.00 0.00 0.00 2.45
414 451 3.868077 AGTTCTGAATAACGCATCAGCTC 59.132 43.478 0.00 0.00 42.21 4.09
415 452 3.866651 AGTTCTGAATAACGCATCAGCT 58.133 40.909 0.00 0.00 42.21 4.24
416 453 4.142816 ACAAGTTCTGAATAACGCATCAGC 60.143 41.667 0.00 0.00 42.21 4.26
422 459 5.741982 ACAAAACACAAGTTCTGAATAACGC 59.258 36.000 0.00 0.00 36.84 4.84
434 471 7.391148 ACACTAATGAGAACAAAACACAAGT 57.609 32.000 0.00 0.00 0.00 3.16
442 479 8.629158 ACATTTGCTAACACTAATGAGAACAAA 58.371 29.630 0.00 0.00 36.61 2.83
443 480 8.165239 ACATTTGCTAACACTAATGAGAACAA 57.835 30.769 0.00 0.00 36.61 2.83
448 485 9.102757 ACTGATACATTTGCTAACACTAATGAG 57.897 33.333 0.00 0.00 36.61 2.90
449 486 9.098355 GACTGATACATTTGCTAACACTAATGA 57.902 33.333 0.00 0.00 36.61 2.57
453 490 9.502091 AAAAGACTGATACATTTGCTAACACTA 57.498 29.630 0.00 0.00 0.00 2.74
454 491 7.986085 AAAGACTGATACATTTGCTAACACT 57.014 32.000 0.00 0.00 0.00 3.55
460 497 7.667043 TTCGTAAAAGACTGATACATTTGCT 57.333 32.000 0.00 0.00 0.00 3.91
477 514 5.587043 ACAGGAACACAATCTGTTTCGTAAA 59.413 36.000 0.00 0.00 43.60 2.01
478 515 5.007234 CACAGGAACACAATCTGTTTCGTAA 59.993 40.000 0.00 0.00 43.60 3.18
480 517 3.312421 CACAGGAACACAATCTGTTTCGT 59.688 43.478 0.00 0.00 43.60 3.85
498 535 1.676916 CCAGACAGGCATACCACACAG 60.677 57.143 0.00 0.00 39.06 3.66
520 557 2.512515 GAGACCTGCGGATGTGCC 60.513 66.667 0.00 0.00 0.00 5.01
544 581 2.594303 TGGCCAGTGTTTGCTCCG 60.594 61.111 0.00 0.00 0.00 4.63
545 582 2.270986 CCTGGCCAGTGTTTGCTCC 61.271 63.158 30.63 0.00 0.00 4.70
547 584 0.178953 ATTCCTGGCCAGTGTTTGCT 60.179 50.000 30.63 5.75 0.00 3.91
549 586 1.542915 CTGATTCCTGGCCAGTGTTTG 59.457 52.381 30.63 15.44 0.00 2.93
550 587 1.548582 CCTGATTCCTGGCCAGTGTTT 60.549 52.381 30.63 12.87 0.00 2.83
551 588 0.038744 CCTGATTCCTGGCCAGTGTT 59.961 55.000 30.63 14.74 0.00 3.32
552 589 1.136329 ACCTGATTCCTGGCCAGTGT 61.136 55.000 30.63 16.17 35.04 3.55
554 591 0.329596 GAACCTGATTCCTGGCCAGT 59.670 55.000 30.63 13.43 35.04 4.00
555 592 3.181526 GAACCTGATTCCTGGCCAG 57.818 57.895 26.87 26.87 35.04 4.85
563 600 3.955471 TGGACATTCTGGAACCTGATTC 58.045 45.455 1.56 0.45 36.48 2.52
564 601 4.043310 TCTTGGACATTCTGGAACCTGATT 59.957 41.667 1.56 0.00 0.00 2.57
565 602 3.588842 TCTTGGACATTCTGGAACCTGAT 59.411 43.478 1.56 0.00 0.00 2.90
566 603 2.978978 TCTTGGACATTCTGGAACCTGA 59.021 45.455 0.00 0.00 0.00 3.86
573 610 5.128205 TGAATATGCTCTTGGACATTCTGG 58.872 41.667 0.00 0.00 0.00 3.86
580 617 5.404968 CGAGAATCTGAATATGCTCTTGGAC 59.595 44.000 0.00 0.00 0.00 4.02
584 621 5.757320 CCAACGAGAATCTGAATATGCTCTT 59.243 40.000 0.00 0.00 0.00 2.85
609 646 2.507339 AAAACAGGTGACCATTTGCG 57.493 45.000 3.63 0.00 0.00 4.85
666 707 2.581354 GTCAGCGTCAGGGAGCAT 59.419 61.111 0.00 0.00 35.48 3.79
679 720 2.349817 CCAGTAGCAAACAAAGCGTCAG 60.350 50.000 0.00 0.00 37.01 3.51
681 722 1.602377 ACCAGTAGCAAACAAAGCGTC 59.398 47.619 0.00 0.00 37.01 5.19
683 724 2.546368 TGTACCAGTAGCAAACAAAGCG 59.454 45.455 0.00 0.00 37.01 4.68
684 725 4.455877 AGATGTACCAGTAGCAAACAAAGC 59.544 41.667 0.00 0.00 0.00 3.51
685 726 5.122396 GGAGATGTACCAGTAGCAAACAAAG 59.878 44.000 0.00 0.00 0.00 2.77
687 728 4.041075 TGGAGATGTACCAGTAGCAAACAA 59.959 41.667 0.00 0.00 33.22 2.83
688 729 3.580895 TGGAGATGTACCAGTAGCAAACA 59.419 43.478 0.00 0.00 33.22 2.83
689 730 4.202245 TGGAGATGTACCAGTAGCAAAC 57.798 45.455 0.00 0.00 33.22 2.93
690 731 4.286032 ACTTGGAGATGTACCAGTAGCAAA 59.714 41.667 0.00 0.00 38.70 3.68
691 732 3.838317 ACTTGGAGATGTACCAGTAGCAA 59.162 43.478 0.00 0.00 38.70 3.91
692 733 3.195610 CACTTGGAGATGTACCAGTAGCA 59.804 47.826 0.00 0.00 38.70 3.49
693 734 3.430929 CCACTTGGAGATGTACCAGTAGC 60.431 52.174 0.00 0.00 38.70 3.58
694 735 4.023980 TCCACTTGGAGATGTACCAGTAG 58.976 47.826 0.00 0.00 39.78 2.57
695 736 4.055710 TCCACTTGGAGATGTACCAGTA 57.944 45.455 0.00 0.00 39.78 2.74
696 737 2.902608 TCCACTTGGAGATGTACCAGT 58.097 47.619 0.00 0.00 39.78 4.00
697 738 3.981071 TTCCACTTGGAGATGTACCAG 57.019 47.619 0.00 0.00 46.36 4.00
698 739 4.324254 GGATTTCCACTTGGAGATGTACCA 60.324 45.833 6.03 0.00 46.36 3.25
699 740 4.080299 AGGATTTCCACTTGGAGATGTACC 60.080 45.833 6.03 2.21 46.36 3.34
700 741 5.104259 AGGATTTCCACTTGGAGATGTAC 57.896 43.478 6.03 0.00 46.36 2.90
701 742 5.250543 TCAAGGATTTCCACTTGGAGATGTA 59.749 40.000 6.03 0.00 46.36 2.29
702 743 4.043310 TCAAGGATTTCCACTTGGAGATGT 59.957 41.667 6.03 0.00 46.36 3.06
726 767 3.139077 CCTAACGAGTGCTCCTGTTTTT 58.861 45.455 0.00 0.00 0.00 1.94
727 768 2.104281 ACCTAACGAGTGCTCCTGTTTT 59.896 45.455 0.00 0.00 0.00 2.43
742 783 6.145338 TGAGAGTATGAATTCCGACCTAAC 57.855 41.667 2.27 0.00 0.00 2.34
932 1132 1.577328 AAGCGCGGATTGGTTCAGTG 61.577 55.000 8.83 0.00 33.74 3.66
1071 1686 1.454111 GAGTAGAGAGGCTGCGGGA 60.454 63.158 0.00 0.00 34.03 5.14
1073 1688 2.494530 GGGAGTAGAGAGGCTGCGG 61.495 68.421 0.00 0.00 34.03 5.69
1077 1692 2.123640 GGCGGGAGTAGAGAGGCT 60.124 66.667 0.00 0.00 0.00 4.58
1136 1751 1.373497 GGGAGAGCATCATACGGCG 60.373 63.158 4.80 4.80 37.82 6.46
1141 1756 0.542938 CGGGGAGGGAGAGCATCATA 60.543 60.000 0.00 0.00 37.82 2.15
1142 1757 1.840650 CGGGGAGGGAGAGCATCAT 60.841 63.158 0.00 0.00 37.82 2.45
1143 1758 2.444706 CGGGGAGGGAGAGCATCA 60.445 66.667 0.00 0.00 37.82 3.07
1181 1800 0.541863 ATGCCCGTTGGTAGAAGGAG 59.458 55.000 0.00 0.00 0.00 3.69
1209 1828 3.643237 TCGAGATGGTATTTCCCTGTCT 58.357 45.455 0.00 0.00 34.77 3.41
1211 1830 5.602978 ACTAATCGAGATGGTATTTCCCTGT 59.397 40.000 0.00 0.00 34.77 4.00
1212 1831 6.102897 ACTAATCGAGATGGTATTTCCCTG 57.897 41.667 0.00 0.00 34.77 4.45
1213 1832 6.071278 GCTACTAATCGAGATGGTATTTCCCT 60.071 42.308 0.00 0.00 34.77 4.20
1228 1847 5.644206 TGGAGTAGAGCATAGCTACTAATCG 59.356 44.000 0.00 0.00 46.25 3.34
1238 1857 4.404073 AGAAAGTGGTGGAGTAGAGCATAG 59.596 45.833 0.00 0.00 0.00 2.23
1241 1860 2.609747 AGAAAGTGGTGGAGTAGAGCA 58.390 47.619 0.00 0.00 0.00 4.26
1252 3193 6.238648 CCAAATACGTCAAGAAAGAAAGTGGT 60.239 38.462 0.00 0.00 0.00 4.16
1255 3196 6.766467 ACTCCAAATACGTCAAGAAAGAAAGT 59.234 34.615 0.00 0.00 0.00 2.66
1310 3255 3.390521 CCCCTGCAGCCGTAGTGA 61.391 66.667 8.66 0.00 0.00 3.41
1313 3258 1.899437 TTCTTCCCCTGCAGCCGTAG 61.899 60.000 8.66 3.44 0.00 3.51
1319 3264 1.000396 CCCCTTTCTTCCCCTGCAG 60.000 63.158 6.78 6.78 0.00 4.41
1339 3288 1.336440 CCTACAGATCACAGAGCTCCG 59.664 57.143 10.93 1.77 0.00 4.63
1344 3293 3.261897 ACCAAACCCTACAGATCACAGAG 59.738 47.826 0.00 0.00 0.00 3.35
1349 3298 3.579586 ACGTTACCAAACCCTACAGATCA 59.420 43.478 0.00 0.00 31.46 2.92
1360 3309 4.960329 TCATTTATGCGACGTTACCAAAC 58.040 39.130 0.00 0.00 0.00 2.93
1368 3331 3.322369 TGTCAGTTCATTTATGCGACGT 58.678 40.909 0.00 0.00 0.00 4.34
1369 3332 3.612423 TCTGTCAGTTCATTTATGCGACG 59.388 43.478 0.00 0.00 0.00 5.12
1372 3335 5.740569 CCAAATCTGTCAGTTCATTTATGCG 59.259 40.000 0.00 0.00 0.00 4.73
1376 3339 5.048083 GTGGCCAAATCTGTCAGTTCATTTA 60.048 40.000 7.24 0.00 0.00 1.40
1388 3351 3.312421 CCTAACATACGTGGCCAAATCTG 59.688 47.826 7.24 6.00 0.00 2.90
1392 3355 1.455248 GCCTAACATACGTGGCCAAA 58.545 50.000 7.24 0.00 39.49 3.28
1396 3359 1.149964 GACCGCCTAACATACGTGGC 61.150 60.000 0.00 0.00 41.76 5.01
1401 3364 2.018542 TGCAAGACCGCCTAACATAC 57.981 50.000 0.00 0.00 0.00 2.39
1406 3369 2.026636 AGGTATTTGCAAGACCGCCTAA 60.027 45.455 20.81 0.00 38.35 2.69
1408 3371 0.328258 AGGTATTTGCAAGACCGCCT 59.672 50.000 20.81 13.12 38.35 5.52
1409 3372 2.032680 TAGGTATTTGCAAGACCGCC 57.967 50.000 20.81 11.46 38.35 6.13
1410 3373 2.745281 TGTTAGGTATTTGCAAGACCGC 59.255 45.455 20.81 16.51 38.35 5.68
1412 3401 6.482308 ACGATATGTTAGGTATTTGCAAGACC 59.518 38.462 19.91 19.91 0.00 3.85
1445 3434 0.309922 GCATCATGAAGCACGGGATG 59.690 55.000 17.64 0.46 38.64 3.51
1475 3464 5.455056 TTCCTAAGACTTGACTGACTGAC 57.545 43.478 0.00 0.00 0.00 3.51
1478 3468 6.257586 AGGTATTCCTAAGACTTGACTGACT 58.742 40.000 0.00 0.00 43.12 3.41
1479 3469 6.532988 AGGTATTCCTAAGACTTGACTGAC 57.467 41.667 0.00 0.00 43.12 3.51
1480 3470 6.321690 GCTAGGTATTCCTAAGACTTGACTGA 59.678 42.308 0.00 0.00 44.63 3.41
1481 3471 6.508777 GCTAGGTATTCCTAAGACTTGACTG 58.491 44.000 0.00 0.00 44.63 3.51
1482 3472 5.299782 CGCTAGGTATTCCTAAGACTTGACT 59.700 44.000 0.00 0.00 44.63 3.41
1483 3473 5.507650 CCGCTAGGTATTCCTAAGACTTGAC 60.508 48.000 0.00 0.00 44.63 3.18
1484 3474 4.583489 CCGCTAGGTATTCCTAAGACTTGA 59.417 45.833 0.00 0.00 44.63 3.02
1485 3475 4.262079 CCCGCTAGGTATTCCTAAGACTTG 60.262 50.000 0.00 0.00 44.63 3.16
1486 3476 3.896272 CCCGCTAGGTATTCCTAAGACTT 59.104 47.826 0.00 0.00 44.63 3.01
1504 3494 1.379527 ACAAAATGCTACTAGCCCGC 58.620 50.000 5.58 0.00 41.51 6.13
1506 3496 9.152595 GTATAGAATACAAAATGCTACTAGCCC 57.847 37.037 5.58 0.00 41.51 5.19
1507 3497 9.930693 AGTATAGAATACAAAATGCTACTAGCC 57.069 33.333 5.58 0.00 41.51 3.93
1556 3552 7.778853 AGTCATTTCTCAAGGCATTCTATGATT 59.221 33.333 0.00 0.00 0.00 2.57
1581 3577 5.846203 TCAGAAAAATTCCTTTGCCTTGAG 58.154 37.500 0.00 0.00 0.00 3.02
1609 3605 9.981460 AAGTCAATCCTACCATATTTTCTTTCT 57.019 29.630 0.00 0.00 0.00 2.52
1615 3611 9.975218 ACTGTAAAGTCAATCCTACCATATTTT 57.025 29.630 0.00 0.00 0.00 1.82
1616 3612 9.396022 CACTGTAAAGTCAATCCTACCATATTT 57.604 33.333 0.00 0.00 0.00 1.40
1617 3613 8.768397 TCACTGTAAAGTCAATCCTACCATATT 58.232 33.333 0.00 0.00 0.00 1.28
1618 3614 8.319057 TCACTGTAAAGTCAATCCTACCATAT 57.681 34.615 0.00 0.00 0.00 1.78
1619 3615 7.727578 TCACTGTAAAGTCAATCCTACCATA 57.272 36.000 0.00 0.00 0.00 2.74
1620 3616 6.620877 TCACTGTAAAGTCAATCCTACCAT 57.379 37.500 0.00 0.00 0.00 3.55
1621 3617 6.428083 TTCACTGTAAAGTCAATCCTACCA 57.572 37.500 0.00 0.00 0.00 3.25
1622 3618 7.444487 ACTTTTCACTGTAAAGTCAATCCTACC 59.556 37.037 7.73 0.00 40.78 3.18
1641 3637 9.609346 GGCACTTATACTAATTCCTACTTTTCA 57.391 33.333 0.00 0.00 0.00 2.69
1642 3638 8.762426 CGGCACTTATACTAATTCCTACTTTTC 58.238 37.037 0.00 0.00 0.00 2.29
1643 3639 8.262933 ACGGCACTTATACTAATTCCTACTTTT 58.737 33.333 0.00 0.00 0.00 2.27
1676 3672 1.089920 CAGAAAGCCCATTCCAGTCG 58.910 55.000 0.00 0.00 0.00 4.18
1703 3699 2.079158 TGCAGCTTGAACTGAGTATGC 58.921 47.619 0.00 0.00 40.25 3.14
1748 3744 3.058501 CGCGTCAACCTTCCTGTAAAAAT 60.059 43.478 0.00 0.00 0.00 1.82
1797 3793 1.977412 GAGACGAACAGTAACGTGCTC 59.023 52.381 9.87 11.26 42.74 4.26
1818 3814 0.526211 GATTGGGAGCAACCGGTTTC 59.474 55.000 19.55 14.07 40.11 2.78
1923 3931 3.290710 AGGTGCATCGATAAGCCAAATT 58.709 40.909 0.00 0.00 0.00 1.82
1991 4002 5.695851 AGGTGATTCTTTTGCAGTTAGTG 57.304 39.130 0.00 0.00 0.00 2.74
1992 4003 6.296026 TGTAGGTGATTCTTTTGCAGTTAGT 58.704 36.000 0.00 0.00 0.00 2.24
2018 4029 7.806487 TGTCACGACTCAAGTATTTGTAAGTAG 59.194 37.037 0.00 0.00 35.73 2.57
2024 4075 4.690748 CCATGTCACGACTCAAGTATTTGT 59.309 41.667 0.00 0.00 35.73 2.83
2025 4076 4.690748 ACCATGTCACGACTCAAGTATTTG 59.309 41.667 0.00 0.00 35.57 2.32
2031 4082 1.335964 ACGACCATGTCACGACTCAAG 60.336 52.381 9.64 0.00 32.09 3.02
2049 4100 2.160822 CCATATGGGCTCTCTCAACG 57.839 55.000 14.52 0.00 0.00 4.10
2079 4130 5.389859 TTGCCAATTCACTTAACATGGAG 57.610 39.130 0.00 0.00 31.76 3.86
2080 4131 4.220382 CCTTGCCAATTCACTTAACATGGA 59.780 41.667 0.00 0.00 31.76 3.41
2088 4139 1.963515 GGTGTCCTTGCCAATTCACTT 59.036 47.619 6.70 0.00 0.00 3.16
2104 4155 7.446931 CAGTGAGAGTGATATACAGATAGGTGT 59.553 40.741 0.00 0.00 34.21 4.16
2116 4167 3.372206 GCGCAAAACAGTGAGAGTGATAT 59.628 43.478 0.30 0.00 0.00 1.63
2158 4209 3.593442 ACCACCCAGAATTTCTTGACA 57.407 42.857 0.00 0.00 0.00 3.58
2174 4225 4.681744 TCTTTGTTGCATTCTCAAACCAC 58.318 39.130 0.00 0.00 0.00 4.16
2189 4240 2.755952 ACAGGGCCTTCTTCTTTGTT 57.244 45.000 1.32 0.00 0.00 2.83
2190 4241 2.695147 CAAACAGGGCCTTCTTCTTTGT 59.305 45.455 1.32 0.00 0.00 2.83
2194 4245 0.185901 TGCAAACAGGGCCTTCTTCT 59.814 50.000 1.32 0.00 0.00 2.85
2201 4252 1.135721 GAATCTGATGCAAACAGGGCC 59.864 52.381 19.26 0.00 37.34 5.80
2204 4255 4.008330 AGTCTGAATCTGATGCAAACAGG 58.992 43.478 19.26 7.44 37.34 4.00
2219 4270 3.082548 CTCGGTGTTAGGAGAGTCTGAA 58.917 50.000 0.00 0.00 31.90 3.02
2220 4271 2.618302 CCTCGGTGTTAGGAGAGTCTGA 60.618 54.545 0.00 0.00 36.08 3.27
2225 4276 2.561419 TGAAACCTCGGTGTTAGGAGAG 59.439 50.000 0.00 0.00 37.57 3.20
2228 4279 3.842007 TTTGAAACCTCGGTGTTAGGA 57.158 42.857 0.00 0.00 37.57 2.94
2320 4371 2.866156 CACAAGAGCAGAAAGAACACGA 59.134 45.455 0.00 0.00 0.00 4.35
2321 4372 2.032549 CCACAAGAGCAGAAAGAACACG 60.033 50.000 0.00 0.00 0.00 4.49
2330 4381 1.207089 CCGATTACCCACAAGAGCAGA 59.793 52.381 0.00 0.00 0.00 4.26
2369 4420 1.663739 CCCGAAGACGAGACCAACA 59.336 57.895 0.00 0.00 42.66 3.33
2458 4509 4.502777 GGCTATCATCAAGCATCAGTCTGA 60.503 45.833 4.68 4.68 41.93 3.27
2460 4511 3.244491 GGGCTATCATCAAGCATCAGTCT 60.244 47.826 0.00 0.00 41.93 3.24
2544 4595 3.071479 TCCACGACATTTGGCTAGAAAC 58.929 45.455 0.00 0.00 33.71 2.78
2572 4623 4.153475 GGCTAGAAATAACAGCGTGAAACA 59.847 41.667 0.00 0.00 35.74 2.83
2603 4655 0.677731 GCACTTACTGCCATGAGCCA 60.678 55.000 0.00 0.00 42.71 4.75
2616 4668 7.307751 CGTCTTTCTCCAAAATAACAGCACTTA 60.308 37.037 0.00 0.00 0.00 2.24
2642 4694 0.889186 ATGGAACGAACACAGGCACC 60.889 55.000 0.00 0.00 0.00 5.01
2682 4734 0.539207 TGGCAGCAACAATAGGCACA 60.539 50.000 0.00 0.00 0.00 4.57
2726 4786 7.230849 TGCACCTCATCAATATGAAAAAGTT 57.769 32.000 0.00 0.00 41.57 2.66
2727 4787 6.839124 TGCACCTCATCAATATGAAAAAGT 57.161 33.333 0.00 0.00 41.57 2.66
2735 4795 5.371526 AGTTCGATTGCACCTCATCAATAT 58.628 37.500 0.00 0.00 33.49 1.28
2780 4844 6.999950 TGATTGCAGTAACTAAGTTCAGGTA 58.000 36.000 0.00 0.00 0.00 3.08
2781 4845 5.865085 TGATTGCAGTAACTAAGTTCAGGT 58.135 37.500 0.00 0.00 0.00 4.00
2803 4867 2.292569 GGTGCATCTAGGCATGACATTG 59.707 50.000 0.00 0.00 46.92 2.82
2804 4868 2.092267 TGGTGCATCTAGGCATGACATT 60.092 45.455 0.00 0.00 46.92 2.71
2805 4869 1.491754 TGGTGCATCTAGGCATGACAT 59.508 47.619 0.00 0.00 46.92 3.06
2806 4870 0.911053 TGGTGCATCTAGGCATGACA 59.089 50.000 0.00 0.00 46.92 3.58
2807 4871 1.134280 ACTGGTGCATCTAGGCATGAC 60.134 52.381 0.00 0.00 46.92 3.06
2808 4872 1.206878 ACTGGTGCATCTAGGCATGA 58.793 50.000 0.00 0.00 46.92 3.07
2809 4873 2.158914 TGTACTGGTGCATCTAGGCATG 60.159 50.000 0.00 0.00 46.92 4.06
2810 4874 2.103771 CTGTACTGGTGCATCTAGGCAT 59.896 50.000 0.00 0.00 46.92 4.40
2812 4876 1.202580 CCTGTACTGGTGCATCTAGGC 60.203 57.143 10.53 0.00 0.00 3.93
2813 4877 1.202580 GCCTGTACTGGTGCATCTAGG 60.203 57.143 18.89 2.71 0.00 3.02
2814 4878 1.536922 CGCCTGTACTGGTGCATCTAG 60.537 57.143 18.00 0.00 0.00 2.43
2815 4879 0.459899 CGCCTGTACTGGTGCATCTA 59.540 55.000 18.00 0.00 0.00 1.98
2816 4880 1.219124 CGCCTGTACTGGTGCATCT 59.781 57.895 18.00 0.00 0.00 2.90
2817 4881 0.179073 ATCGCCTGTACTGGTGCATC 60.179 55.000 23.47 5.56 37.51 3.91
2818 4882 0.462581 CATCGCCTGTACTGGTGCAT 60.463 55.000 23.47 15.85 37.51 3.96
2819 4883 1.079197 CATCGCCTGTACTGGTGCA 60.079 57.895 23.47 14.55 37.51 4.57
2820 4884 1.815421 CCATCGCCTGTACTGGTGC 60.815 63.158 23.47 8.79 37.51 5.01
2821 4885 1.815421 GCCATCGCCTGTACTGGTG 60.815 63.158 22.57 22.57 38.85 4.17
2822 4886 1.626356 ATGCCATCGCCTGTACTGGT 61.626 55.000 18.89 0.00 0.00 4.00
2823 4887 1.146930 ATGCCATCGCCTGTACTGG 59.853 57.895 14.18 14.18 0.00 4.00
2824 4888 1.162181 CCATGCCATCGCCTGTACTG 61.162 60.000 0.00 0.00 0.00 2.74
2825 4889 1.146930 CCATGCCATCGCCTGTACT 59.853 57.895 0.00 0.00 0.00 2.73
2826 4890 2.546494 GCCATGCCATCGCCTGTAC 61.546 63.158 0.00 0.00 0.00 2.90
2827 4891 2.203195 GCCATGCCATCGCCTGTA 60.203 61.111 0.00 0.00 0.00 2.74
2828 4892 4.119363 AGCCATGCCATCGCCTGT 62.119 61.111 0.00 0.00 0.00 4.00
2829 4893 3.592814 CAGCCATGCCATCGCCTG 61.593 66.667 0.00 0.00 0.00 4.85
2830 4894 3.129362 ATCAGCCATGCCATCGCCT 62.129 57.895 0.00 0.00 0.00 5.52
2831 4895 2.596631 ATCAGCCATGCCATCGCC 60.597 61.111 0.00 0.00 0.00 5.54
2832 4896 2.643272 CATCAGCCATGCCATCGC 59.357 61.111 0.00 0.00 0.00 4.58
2839 4903 1.725557 GACAGCCTGCATCAGCCATG 61.726 60.000 0.00 0.00 41.13 3.66
2840 4904 1.453379 GACAGCCTGCATCAGCCAT 60.453 57.895 0.00 0.00 41.13 4.40
2841 4905 2.045634 GACAGCCTGCATCAGCCA 60.046 61.111 0.00 0.00 41.13 4.75
2842 4906 1.035932 AATGACAGCCTGCATCAGCC 61.036 55.000 0.00 0.00 41.13 4.85
2843 4907 0.381089 GAATGACAGCCTGCATCAGC 59.619 55.000 0.00 0.00 42.57 4.26
2844 4908 1.941294 GAGAATGACAGCCTGCATCAG 59.059 52.381 0.00 0.00 0.00 2.90
2845 4909 1.558294 AGAGAATGACAGCCTGCATCA 59.442 47.619 0.00 0.00 0.00 3.07
2861 4925 0.107897 AACACCAACACGCACAGAGA 60.108 50.000 0.00 0.00 0.00 3.10
2862 4926 0.732571 AAACACCAACACGCACAGAG 59.267 50.000 0.00 0.00 0.00 3.35
2863 4927 0.449786 CAAACACCAACACGCACAGA 59.550 50.000 0.00 0.00 0.00 3.41
2865 4929 0.960861 TCCAAACACCAACACGCACA 60.961 50.000 0.00 0.00 0.00 4.57
2870 4942 3.443976 GTGACAATCCAAACACCAACAC 58.556 45.455 0.00 0.00 0.00 3.32
2893 4965 7.339482 ACCAAAGAATTCCTAGGATGTACTTC 58.661 38.462 13.57 10.61 0.00 3.01
2898 4970 5.779241 TGACCAAAGAATTCCTAGGATGT 57.221 39.130 13.57 2.99 0.00 3.06
2906 4978 1.134946 CGGCCATGACCAAAGAATTCC 59.865 52.381 2.24 0.00 0.00 3.01
2907 4979 2.091541 TCGGCCATGACCAAAGAATTC 58.908 47.619 2.24 0.00 0.00 2.17
2908 4980 2.214376 TCGGCCATGACCAAAGAATT 57.786 45.000 2.24 0.00 0.00 2.17
2909 4981 2.214376 TTCGGCCATGACCAAAGAAT 57.786 45.000 2.24 0.00 0.00 2.40
2910 4982 1.611491 GTTTCGGCCATGACCAAAGAA 59.389 47.619 2.24 0.00 0.00 2.52
2911 4983 1.243902 GTTTCGGCCATGACCAAAGA 58.756 50.000 2.24 0.00 0.00 2.52
2912 4984 0.958091 TGTTTCGGCCATGACCAAAG 59.042 50.000 2.24 0.00 0.00 2.77
2913 4985 1.626686 ATGTTTCGGCCATGACCAAA 58.373 45.000 2.24 0.00 0.00 3.28
2914 4986 1.271934 CAATGTTTCGGCCATGACCAA 59.728 47.619 2.24 0.00 0.00 3.67
2915 4987 0.887247 CAATGTTTCGGCCATGACCA 59.113 50.000 2.24 0.00 0.00 4.02
2916 4988 0.173255 CCAATGTTTCGGCCATGACC 59.827 55.000 2.24 0.00 0.00 4.02
2917 4989 0.887933 ACCAATGTTTCGGCCATGAC 59.112 50.000 2.24 0.00 0.00 3.06
2918 4990 1.173043 GACCAATGTTTCGGCCATGA 58.827 50.000 2.24 0.00 0.00 3.07
2919 4991 0.179166 CGACCAATGTTTCGGCCATG 60.179 55.000 2.24 0.00 0.00 3.66
2920 4992 0.608035 ACGACCAATGTTTCGGCCAT 60.608 50.000 2.24 0.00 39.63 4.40
2921 4993 0.820074 AACGACCAATGTTTCGGCCA 60.820 50.000 2.24 0.00 39.63 5.36
2922 4994 0.312729 AAACGACCAATGTTTCGGCC 59.687 50.000 0.00 0.00 39.63 6.13
2923 4995 1.404477 CAAACGACCAATGTTTCGGC 58.596 50.000 6.48 0.00 37.44 5.54
2924 4996 1.404477 GCAAACGACCAATGTTTCGG 58.596 50.000 6.48 0.00 37.44 4.30
2929 5001 2.428890 TCAAAAGGCAAACGACCAATGT 59.571 40.909 0.00 0.00 0.00 2.71
2930 5002 3.090952 TCAAAAGGCAAACGACCAATG 57.909 42.857 0.00 0.00 0.00 2.82
2931 5003 5.410067 CATATCAAAAGGCAAACGACCAAT 58.590 37.500 0.00 0.00 0.00 3.16
2933 5005 3.366883 GCATATCAAAAGGCAAACGACCA 60.367 43.478 0.00 0.00 0.00 4.02
2935 5007 3.119495 AGGCATATCAAAAGGCAAACGAC 60.119 43.478 0.00 0.00 0.00 4.34
2936 5008 3.088532 AGGCATATCAAAAGGCAAACGA 58.911 40.909 0.00 0.00 0.00 3.85
2939 5011 5.681954 GCATGTAGGCATATCAAAAGGCAAA 60.682 40.000 0.00 0.00 33.30 3.68
2954 5026 1.396653 AAGAGCATTGGCATGTAGGC 58.603 50.000 0.00 0.00 44.61 3.93
2958 5030 2.352030 CGTCAAAAGAGCATTGGCATGT 60.352 45.455 0.00 0.00 44.61 3.21
2959 5031 2.256174 CGTCAAAAGAGCATTGGCATG 58.744 47.619 0.00 0.00 44.61 4.06
2963 5035 3.012518 AGATCCGTCAAAAGAGCATTGG 58.987 45.455 0.00 0.00 0.00 3.16
2980 5052 5.807520 TCAGCTCGACAAAATGAACTAGATC 59.192 40.000 0.00 0.00 0.00 2.75
2981 5053 5.724328 TCAGCTCGACAAAATGAACTAGAT 58.276 37.500 0.00 0.00 0.00 1.98
2982 5054 5.134202 TCAGCTCGACAAAATGAACTAGA 57.866 39.130 0.00 0.00 0.00 2.43
2984 5056 5.237815 ACATCAGCTCGACAAAATGAACTA 58.762 37.500 0.00 0.00 0.00 2.24
2995 5067 0.955428 TTGGCCAACATCAGCTCGAC 60.955 55.000 16.05 0.00 0.00 4.20
2997 5069 0.813184 AATTGGCCAACATCAGCTCG 59.187 50.000 23.27 0.00 0.00 5.03
3013 5085 2.498885 GAGCTTTCCCTTGCCATGAATT 59.501 45.455 0.00 0.00 0.00 2.17
3014 5086 2.105766 GAGCTTTCCCTTGCCATGAAT 58.894 47.619 0.00 0.00 0.00 2.57
3026 5098 6.691508 ACCAAATATTTTGACTGAGCTTTCC 58.308 36.000 6.29 0.00 0.00 3.13
3036 5108 8.357290 ACTTTACCCCTACCAAATATTTTGAC 57.643 34.615 6.29 0.00 0.00 3.18
3037 5109 8.808092 CAACTTTACCCCTACCAAATATTTTGA 58.192 33.333 6.29 0.00 0.00 2.69
3038 5110 8.038351 CCAACTTTACCCCTACCAAATATTTTG 58.962 37.037 0.00 0.00 0.00 2.44
3044 5116 3.820119 GCCCAACTTTACCCCTACCAAAT 60.820 47.826 0.00 0.00 0.00 2.32
3082 5177 1.065491 TCACAACTCACAAGCACTGGT 60.065 47.619 0.00 0.00 0.00 4.00
3085 5180 1.290203 CGTCACAACTCACAAGCACT 58.710 50.000 0.00 0.00 0.00 4.40
3087 5182 1.134818 AGACGTCACAACTCACAAGCA 60.135 47.619 19.50 0.00 0.00 3.91
3090 5185 3.331150 ACAAAGACGTCACAACTCACAA 58.669 40.909 19.50 0.00 0.00 3.33
3091 5186 2.967362 ACAAAGACGTCACAACTCACA 58.033 42.857 19.50 0.00 0.00 3.58
3092 5187 3.244579 GGTACAAAGACGTCACAACTCAC 59.755 47.826 19.50 6.29 0.00 3.51
3094 5189 3.450578 TGGTACAAAGACGTCACAACTC 58.549 45.455 19.50 3.92 31.92 3.01
3095 5190 3.530265 TGGTACAAAGACGTCACAACT 57.470 42.857 19.50 0.00 31.92 3.16
3116 5211 1.476891 GATCGAGTGTGGCCTCTGTTA 59.523 52.381 3.32 0.00 0.00 2.41
3172 5267 0.889994 ACATCGTTGCGGGTACAGTA 59.110 50.000 0.00 0.00 0.00 2.74
3176 5271 0.994263 GTACACATCGTTGCGGGTAC 59.006 55.000 7.49 7.49 0.00 3.34
3177 5272 0.889994 AGTACACATCGTTGCGGGTA 59.110 50.000 0.00 0.00 0.00 3.69
3179 5274 0.442310 CAAGTACACATCGTTGCGGG 59.558 55.000 0.00 0.00 0.00 6.13
3182 5277 1.128692 GCTCCAAGTACACATCGTTGC 59.871 52.381 0.00 0.00 0.00 4.17
3190 5285 4.487019 GAGTAACTCTGCTCCAAGTACAC 58.513 47.826 0.00 0.00 0.00 2.90
3201 5296 3.787458 GCAGGCGAGTAACTCTGC 58.213 61.111 0.00 0.00 44.34 4.26
3220 5315 4.509737 GCACCGGCGGTACCTCTC 62.510 72.222 33.65 12.56 32.11 3.20
3258 5353 1.742268 GTGGAGTGGAGTACCGAGTAC 59.258 57.143 6.19 6.19 39.10 2.73
3259 5354 1.676916 CGTGGAGTGGAGTACCGAGTA 60.677 57.143 0.00 0.00 39.42 2.59
3260 5355 0.959372 CGTGGAGTGGAGTACCGAGT 60.959 60.000 0.00 0.00 39.42 4.18
3261 5356 1.654954 CCGTGGAGTGGAGTACCGAG 61.655 65.000 0.00 0.00 39.42 4.63
3262 5357 1.676635 CCGTGGAGTGGAGTACCGA 60.677 63.158 0.00 0.00 39.42 4.69
3264 5359 1.946475 GAGCCGTGGAGTGGAGTACC 61.946 65.000 0.00 0.00 0.00 3.34
3331 5549 2.621055 CGTTAGGCTAGATCTGCTGACT 59.379 50.000 5.18 5.67 0.00 3.41
3368 5587 0.318191 CATCGCTCGTCGTCATCCAT 60.318 55.000 0.00 0.00 39.67 3.41
3369 5588 1.064134 CATCGCTCGTCGTCATCCA 59.936 57.895 0.00 0.00 39.67 3.41
3371 5590 1.048494 CATCATCGCTCGTCGTCATC 58.952 55.000 0.00 0.00 39.67 2.92
3372 5591 0.663153 TCATCATCGCTCGTCGTCAT 59.337 50.000 0.00 0.00 39.67 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.