>input_sequence_52558
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
TGGCCGCCGCACTC---TC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CCCCCACCTCGCCGCGACCCTGCCGTCTCTCCGCTCCCCTGCCCGCCGG
CCTTCTCCCGCAGCCTCTCTACTCCCGCCCCGGGGCGCCCGCATCGCCCTCCGTCGCTCCTCCAGGTGCGCGCCGTATGA
TGCTCTCCCTCCCCG----CCCCCTTCCTTACCCTAGCGCTCCTTCTACCAACGGGCATTGGCCGGAAGACAGGGAAATA
CCATCTCGATTAGTAGCTATGCTC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TACTCCACCACTTT
CTTTCTTGAC----GTATTTGGAGTTGCGGCGGCCGTGCGGGCACCCCATTTTGTCACTACGGCTGCAGGGGAAGAAAGG
G----GGCGGAGCTCTGTGATCTGTAGGGTTTGGTA--------------ACGTCGCATAAATGAACTGACAGATTTGGC
CACGTATGTTAGG--------------------------CGGTCTTGCAAATACCTAACATATCGTAGTGATTCATCCCG
TGCTTCATGATGCATCGAGGTCAG-TCAGTCAGTCAAGTCTTAGGAATACCTAGCGGGCT-----AGTAGCATTTTGTAT
TCTATACTGATTTTGCT-AAAGGAAAAAAAAAATCATAGAATGCCTTGAGAAATGACTCAAGGCAAAGGAATTTTTCTGA
ATCTAGAAAGAAAATATGGTAGGATTGACTTTACAGTGAAAAGTAGGAATTAGTATAAGTGCCGTCCCCATCGACTGGAA
TGGGCTTTCTGCTGACCAGCATACTCAGTTCAAGCTGCAGCACGGCTCAGGAGGCATGGGCCCATTTTTACAGGAAGGTT
GACGCGATGTTTCTAGACCACGGTGGAGGGAGGAGCACGTTACTGTTCGTCTCGAAACCGG-----TTGCTCCCAATCGT
TATATTTAGAAGACCAACGGATAGGATTGACACTTGAGTTCAGTTCAAAATTGATACACCATA-------TACTAGTATA
GATAAGTTTTA--ATTTGGCTTATC-GATGCACCTATGTGGATCGAATCTGTCATCTGTGGCTTTGCAAAATTGGGATAA
CCACTAACTGCAAAAGAATCACCTACATCT----------------------------------------ACTTACAAAT
ACTTGAGTCGTGACATGGTCGTTGAGAGAGCCCATATGGCATCGGTTGTCTCCATGTTAAGTGAATTGGCAAGGACACCT
ATCTGTATATCACTCTCACTGTTTTGCGCTGCAGGCATCCTTACCCTTTGTCAAGAAATTCTGGGTGGTTTGAGAATGCA
ACAAAGAAGAAGGCCCTGTTTGCATCAGATTCAGACTCTCCTAACACCGAGGTTTCAAAACAGAGCAGCACTGGTGACGC
CAGCGCTTCTCCGGATGGCCCGCCAGTCCTCACCATTTTGGCCGGTATCGTCGTGTTCTTTCTGCTCTTGTGGGTAATCG
GATCGATCTTCACCTGGATTGTTGGTCTCGTCTTCGGGGCTGCGAAATCTTAG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr4D_1_TraesCS4D01G318100
CAAAAGGCTAGCTATGAGACCATAAGCTCCATTCCTCTGTTCTGTTTGTTT-ATATAAAATGTGTGGTGGTAGTTTGCTG
ACAAGCATATCCATGTGTATGTTTAATACAGCTCAACTTGAGGAACCTGGAATGCAGCACCTTGAGTTTCTCAACAAGCT
TCGA---CGCCTGACTCTGCTCCATGTATGGGGTGCACACAAGAAGGGTCTGGTGTGGCGCTACTACG------CAGATC
TTCATCTGTAAGGTTTCACAAGGGAACGAACTATTGTGTTGCCCGTAGAGGCTTGTGTAAGGGCTACCTGTATCTGTAGC
TTAGCAGCTCATTGTTAGA------TGTGATGACCTAAGGT-----------------TTGGTAGCCCTGTGCTTCGTTG
TAGCTAACAAACAAAT---AGAAGATCATGCTTGTTTTCCCAGTTTCCATGAGCTGATGCGTTATTCAGAACTTGTGTTT
TGTTCTCATTAGTGTTAGCAAATGTATCAGTCTTTTACGAAACAGATTGTGTTCCTGTGTGGTATGCCTGTCTGGAGGCA
CATCCGCAGGTCTCCGGCGGCGGAGCAAACACTGGCCAGGAATCAGGTTCCAGAATGTCCAAGAGCATATTCAGATTCTC
GTTGGCGCAAATGGTCACCTGTTTTATCCATACATGT---GTTATTTTTGTGTTAAG-AAAAGGCGATGCTCCCTGACGC
TGACGCTTTGTTTGCTACTGGTACATCTCCAAGTGGAAATCCTTGAAAAAACAGGAGCACTCGTTAGGTCGGAATTCATA
CTCTCATCATCAAGAAATAAAACTAAATTTTCCCGAAAAAAAAGAG--AGAAATAAAACTACT-----------------
--------------------------------------------------------------------------------
---------------------------------------------------------TATGTTTCTCTGCGAGAGCCTCT
CCTGATCCTGAAACCCCAAAACCTGTGGCCGCAGCTCG---TCGCACGCAGCAAAGTGCCAAAACCAGAGCAGGAGCTGG
ACCGACTAGACCACTGAACCAATCCGCGCTTGTGTGTGTTGCGCCCTCGCCCTGCCCCCTGCTGCCCCCCTCTGTCGCCA
TGGCCGCCGCACTC---TC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CCCCCACCTCGCCGCGACCCTGCCGTCTCTCCGCTCCCCTGCCCGCCGG
CCTTCTCCCGCAGCCTCTCTACTCCCGCCCCGGGGCGCCCGCATCGCCCTCCGTCGCTCCTCCAGGTGCGCGCCGTATGA
TGCTCTCCCTCCCCG----CCCCCTTCCTTACCCTAGCGCTCCTTCTACCAACGGGCATTGGCCGGAAGACAGGGAAATA
CCATCTCGATTAGTAGCTATGCTC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TACTCCACCACTTT
CTTTCTTGAC----GTATTTGGAGTTGCGGCGGCCGTGCGGGCACCCCATTTTGTCACTACGGCTGCAGGGGAAGAAAGG
G----GGCGGAGCTCTGTGATCTGTAGGGTTTGGTA--------------ACGTCGCATAAATGAACTGACAGATTTGGC
CACGTATGTTAGG--------------------------CGGTCTTGCAAATACCTAACATATCGTAGTGATTCATCCCG
TGCTTCATGATGCATCGAGGTCAG-TCAGTCAGTCAAGTCTTAGGAATACCTAGCGGGCT-----AGTAGCATTTTGTAT
TCTATACTGATTTTGCT-AAAGGAAAAAAAAAATCATAGAATGCCTTGAGAAATGACTCAAGGCAAAGGAATTTTTCTGA
ATCTAGAAAGAAAATATGGTAGGATTGACTTTACAGTGAAAAGTAGGAATTAGTATAAGTGCCGTCCCCATCGACTGGAA
TGGGCTTTCTGCTGACCAGCATACTCAGTTCAAGCTGCAGCACGGCTCAGGAGGCATGGGCCCATTTTTACAGGAAGGTT
GACGCGATGTTTCTAGACCACGGTGGAGGGAGGAGCACGTTACTGTTCGTCTCGAAACCGG-----TTGCTCCCAATCGT
TATATTTAGAAGACCAACGGATAGGATTGACACTTGAGTTCAGTTCAAAATTGATACACCATA-------TACTAGTATA
GATAAGTTTTA--ATTTGGCTTATC-GATGCACCTATGTGGATCGAATCTGTCATCTGTGGCTTTGCAAAATTGGGATAA
CCACTAACTGCAAAAGAATCACCTACATCT----------------------------------------ACTTACAAAT
ACTTGAGTCGTGACATGGTCGTTGAGAGAGCCCATATGGCATCGGTTGTCTCCATGTTAAGTGAATTGGCAAGGACACCT
ATCTGTATATCACTCTCACTGTTTTGCGCTGCAGGCATCCTTACCCTTTGTCAAGAAATTCTGGGTGGTTTGAGAATGCA
ACAAAGAAGAAGGCCCTGTTTGCATCAGATTCAGACTCTCCTAACACCGAGGTTTCAAAACAGAGCAGCACTGGTGACGC
CAGCGCTTCTCCGGATGGCCCGCCAGTCCTCACCATTTTGGCCGGTATCGTCGTGTTCTTTCTGCTCTTGTGGGTAATCG
GATCGATCTTCACCTGGATTGTTGGTCTCGTCTTCGGGGCTGCGAAATCTTAGATGTTCATCAATCTTAGGATAGTTCTG
CACCTTTTCAGTTGTATATACACTTGTCTCAGACTGATGCTTGATGATAGCCCTGGATCATTGCATCCTCTGCTGTCATT
TCCAGCCGAAATTTCTTGAATAATTGTATCACATGTTTCTAGCCAAATGTCGTGGATCACCGTGTTTCACGCTGTTATTT
CTAGCCATATC-TTTGGCTCATGGCAGTAAGTGCTGTTATTTTGGAGAAAGACGGTGCCTGTGTTCGTTCCATTTCTTCT
TAGCTGCTGCGTGT--------GTGCCTATTGTTGCTGCCAGATTATTGCAAGCGCGTAGACTTCAACTTTTTCATATTG
ATGAGGTGCAATCGAACTTGATCTGAATTTAGTTT----TTTTTACCTGAACTTAGTTACTGCAATCAATGTCATGCCTA
GATGCACCAGTACAGGCGATGGCATGGCTGATGCAGGCTGTCATTCTCT--------GTGCGTGTTGGTGTTTGGATTGT
CACCGAAGTACATCCTAGGAATTCTTTGGTCATGGCCGAAACATTGGTCGTTTGCCTTTTGATATGCCTACATGCCAATG
CTCTTTTGACGGATCTAGTTCATTTTGTCGAGCTGATGTTGGCCAATTCATGGCAAGGGAAAGCTCAGTCAAAATA----
-------------------TTTGGTAGGGGTAAAGTTGGGCACGAACCAAGCACACACCAGTGCTTGTGAGTTGTGACGT
CTTTGTACCATAACAGAGGCCACACTCGATCATTGTGTTGGCACATGCCTCCTCGCCCGTGTTTATTACTGTACCCGCAA
CGATGTGTACTTGGAGCAGAGTTACTCGCCTGCAGAGAGGTACCGCCGGTGCACGACGGGGCAAGTATGTGCGTACTCGG
TACTCCACTCCACGGCTCACGGGCGCCGTGCGTCAGTCAGTG--------------------------------------
--------------------------------------------------------------------------------
-----CTGCTGTCATTTATTATGCCGGCA-GTCAGCAGATCTAGCCTAACGGCCTGAATCCCGTGGATGGATGACGACGA
GCGATGATGATGGAGATTCCC
>chr5A_1
CAAAAGGCTAGCTATGAGACCATAAGCTCCATTCCTCTGTTCTGTTTTTTTAATATAAAATGTGTGATTGTAGTTTGCTG
ACAAGCATATCCGTATGTATGTTA-ATGCAGCTCAACTTGAGGAACTTGGAATGCAGCACCTTGAGCTTCTCAACAAGCT
TCGA---CGCCTGACTCTGCTCCATGCATGGAGTGCACACAAGAAGGTTCTGTTGTAGCGCTACTATGCAGATCCAAATC
TTGAATTTTAAGGTTTCACGAGGGAACAAGCTATTGTGTTACCCGTAGAGGCTCATGTAAGGGCTACCTGTATCTGTAGC
TTAGCAGCTCATTGTTAGA------TGTGATGACCT-AGGT-----------------TTGGTAGCCCTGTGCTTGGTTG
TAGCTAAGAAACAAATAGAAGAAGCTCATGCTTCTATTCCCAGTT-----------------------------------
---------------------------------------------------TTCTTGTGTAGTATGCCTGTCTGGAAGCA
CACCGGCAGGTATGGCCAG-----------------------------------------GAGTGCATATTCACATTCTC
GTTGGTGCAAATGGTCACCTGTTTTATCCATACATGTACTAC--------------------------------------
-----------------------------------------CTTGAG-AAACAGGAGCACTCCTTAGGTCGGAATTC---
------TCATCAAGAAATAGAACTATTTGTTCCCGCAAAAAAAGAAAGAGAAACAAAACTACTCCCTCCGTTCCTAAATA
TTTGTCTTTCTAGACATTTCAAATGACTACTACATACGGATGTATGTAGACATATTTTAAAGTGTAGATTCACTCACTTT
GCTCCGTATGTAGTTACTTGTTGAAATGCAAAGACAAGTATTTAGGAATGGAGGGAGTATTTTTCTCTTCGAGAGCCCCT
CCTGATCCTGAAACCCCAAAACCTGTGGTCGCAGCTCGTCATCGCACGCAGCAAAGTGCCAAAACCAGAGCAGGAGCTGG
GCCGACTAGACTACTGAACCAATCCGCGC-------------GCCCTCGCCCTGCT--------CCCCCCTCTGTCGCCA
TGGCCGCCGCACTCTCCTC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CCCCCACCTCGCCGCGACCCTGCCGTCTCTCCGGCCCCCTGCCCGCCGG
CCTTCGCGCGCGGCCTCTCTACTCCCGCCCCGGGGCGCCCGCATCGCCCTCCGTCGCTCCTCCAGGTGCGTGCCGGCCGT
ATGATGCCCTCCCTCCTCACCCCCTTCCTTACCCTAGCGTTCCTTCTAACAACGGGCATTGGCCGGAGGCAGGGGAGGTA
CC------ATCAGTAGTTACGCTC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TACTCCGCCGCTTT
CTTTCTTGATTGATGTATTTGGAGTTGCGGCGGCCGTGCGGGCACCCCATTTTGCCAATACCGGCGCAGGGGAAGAAAGG
G----GGTGGATTTCTGGGATCTGTAGGTTTTCGTA--------------GTGTTGCAGAAACCAACTGGAAGAATTGAC
AACATAGGCTCCCCCTTCTTGCCAAACAATTAGCTGCGCCAGTCTTGGAAATACGTAGCATATCACAGTGATTTATCCCG
TGCTTCATGATGCATCGGGGTTAACTC---------AGTCTTAGGAATACCTAACATGCTACTACAGTAGTATTTAAATT
TATACACTGATTTTGGT-AAAGGAG--AAAAGATCATAGAATGCCTGGAGGAAGGAAACACA------------------
------------------GTAGGATTGGTTT------------TAGGAATTAGTACAAGTGCAATCCCCATGCACTGGAA
CCGGC-TTCTGCTGAACAACATACCCAGTTCATGCTGCAGCACGGCTCAGGAGGCATGGGCCC-TTTTTACAGGAAGGTT
GACGCGATGTTTCTAGACCACGGTGGAGGGCGCAGCACGTTACTGTTCGTCTCAAAACCGGAGGGGTTGCTCCCAATCGT
TATATTTAGAAGACCAACGGATAGGATTGACACTT-AGTTCAGTTCAAAATTAATACACCACA-------TACTAGTATA
GATAAGTTTTGTTATTTGGCTTATCTGATGCACCTATGTGGATCGAATCTGTCATCTGTGGCTTTGCAAAATTGGGATAA
CTGCTAACAGCAAAAGAATCACCTACATGTTAGAAATTTCAGTTGTCCATTTTGTGCGCAACCTCATGCCACTTGAAAAT
ATTTGAGTCGT----------------------------------------------------------------CACCT
ATCTGTTTATCACTCTCACTGATTTGCGCTGCAGGCATCCTTACCCTTCGTCAAGAAATTCTGGATGGTTTGAGAATGCG
GCAAGGAAGAAAGCTCTGTTTGCATCAGAGACAGATTCCCCTAGCACCGAGGTTTCAAAACAGAGCAGCACCGGCGACGC
CAACTCTTCTCCACATGGCCCGCCAGTCCTGACCATTTTGGCCGGTATCGCTGTGTTCTTCCTGCTCTTGTGGGTCATCG
GATCGATCTTCACCTGGATCGTCGGTCTCGTCTTCGGGGCTGCGAAATCTTAGGTGTTTATCAATGTTAGGATAGTTCTG
CACCTTTTCAGTTGTATATACACTTGTCCCCGGCTGCTGTTTGATGATAGCCCTGGATCATTGCATCCTCTGCTGTCATT
TCCATCCGAGA-TTCTTGAATAATTGTATTACATATTCCTAGCCAAAAGTCACGGATTAC-------CACACTGTTATTT
CTAGCCATATC-TT-GGCTCATGACAGCAAGTGTTGTTATTTTGGAGAAAGACAGTGCCTGTGTTCGTTCCATTTCTTCT
TTGCTGCTGCGTGCGTGCATGCGTGCCTATTGTTGCTGCCAGATTATTGCAAGCACATAAACTTTCCCTTTTTCTTATTG
ATGAGGTGCAATCGAACGTGATCTGAATTTAGTTTTTCTTTTTACCCTGAACTTAGTTACTGCAATGGCATGACTA----
-----------------------------GATGCAGGCTGTCATGGGCCCTATCTCCGTGCCTGTTGGTGTTTGGATTGT
CACCAAAGTCCATCCTA-------------------CGAATTCTCGACCGCTTGCTTTTTGATATACCT--ATGGCAATG
CTCTTTTGACGACCCCAGTTCATTTTTTGGAGCTGATGTTGGCCTCTTCATGGCAAGCGAAAGCTCAACAAAAATCTTGG
CTAATCTCAGAATATTTTTTTTGGTAGGGGTAAAGTTGGGCACGAACCAAACACACCCGGTACC--------TGTGACGT
CTGTGTACCAGATCAGAGGCCACACTCGATCATTGTGTTGGCA--TGCCTCCTCGGCCGTGTTTATCAC-----CCACAA
CGATATGTACTTGGAACAGAGTTACTCGCCTGCA--------------GTGCACGACGGAGCAAGTATGTACCACTAC-G
TACTCCACTCCACGGCTCACGGGCGCCGTGCT---GTCAGTG--------------------------------------
--------------------------------------------------------------------------------
-----CTGCTGTCATTTATTATGCCGGCCGGTCAGCAGATCTAGCCTAACGGCCTGAATCCCGTGGGC----GACGACGA
GCGATGATGATGGAGATTCCC
>chr4B_58
----------------------------------------------------------AATGCGTGGTGGTAGTTTGCTG
ACAAGCATATC----TGCATGTTG-ATACAGCTCAACTTGAGGAACTTGGAATGCAGCACCTTGAGCTTCTCAACGAGCT
TCGAGGACGCCTGACTTTGCTCCGTGTATGGAGCGCACACAAGAGGGTCTGCTT----------TATG------CAGAGC
TTAATC---------------------------TTTTGTAACCTGTAGAGGCTTATGCAAGGGCCACCGTGGAAGGATGT
TTTGTAGACAAACAATTCTTAGACGTGTGATGACCT-AGGTTTCTCCAAATTTACCTGTTGGTAGCCCTGTGCTTGGTTG
TAGCTAGCAAACAAATGGAAGAAGCTCATGCTTGTTTTCCCAGTTTCCATCGACTGATTCATTCGTCAGATCTTGTGTCC
TGTTGCCATCGGTGTTGGCAAATGTATCAGTCTCCTCCGAAACAGATTGTGTTCTTGTGTAGTATGCCTGTCTGGAAGCA
CATCTGTGGGTATCCGGCAGATGCGTTCGC-------------CAGGTTGCAGAATATCCGAGAGCATATTCAGATTCTC
GTTGGTGCAAACGGCCACCTGTTTTATCCATAAATGTACTGTTATTTTTGTGTTAAAAAAAAGGCGGTGCTACCTGACGT
TTAGTTTG---------------CATCTCCAAGTGAAAATTCTTGAG-AAGCAGGAGCACTCTTTAGGTCAGAATTTATA
ATCTCATCATCAAGAAATGAAACTATTTTTTCCCGCAAAAAAAGAA--AGAGAAATAATAC-------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TATTTTTCTCTGCGACAGCCTCT
CCTGATCTTGAAACCCCAAAACCTGTGGCTGCAGCTCGTCACGCA---CAGCAAAGTGCCAAAACCAGAGCAGGAGCTGG
ACCGGCTAGACTACTGAACCAGTCCGCGCTTGTGTGTGTTGCGCCCTCGCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCAGCTCGCCGCGACCCTGCCGTCTCTCCGCCCTTCGCCCT-----
----------CGGCCTCTCTACTCCCGCCCCGGGGCGCCCGCATCGCCCTCCGTCGG---TCCAGGTGCGTGCCGGCCGT
ATGATGCCCTCCTCG----CCCCCTTCCTTACCCTAGCGTTCCTTCTAACAACGGGCATTGGCCGGAGACAGGG--AATG
CCATCTTGATTAGTAGAGTACTCCCTCCGTCCGAAAATACTTGTCATCAAAATGGACAAAAAAGGATGTATCTAGAATTA
AAATACATCTAGATACATCCCTTTTTATTCATTTTGATGACAAGGAGTATTTAACCAAAAACTACCACAATTCGCGGAAA
CGTGACAGAAAACTACCACTTTACAATTTTGTCCCGAAAACTACCACTTTTTTATTAATCCGTGACAAAAAACTACCAAG
TGTGAAAACTGCTCGCTTTGCCTGCAATCGGGTCCCTAGTTTTTTTTCAAAAAAGCAATCGGGTCCTCCGCCTCCTTCTC
CTCGTCGCCGGCCTCCTCCTTCCCCAGCCGTCCGCAGCTTGCTCGCCATCGCTCGCCATCGAACGGGTCCTTCCCCTGCG
GCCGTCCCCACCCACAACGACGTTGCGGTAGAGGAAGACGGGGAGCGCGTCGATGAAGGCCTGGGGAAGGAGGCTGGGCA
TGGGGAAGAAGAGCTATCCTCCTCCCGATCTCGTCCCACTTCTTCTTCTTGGACGGCGGTGCTGTGATCGTCGCCAGCGC
CATTGACGAGGGCGACGAAGAAGATGGCGGCGATGGCGAGGGCGAGGCCGTCGAGCCCAGCCCAGGGGCGCCGACCGAGG
GACTTGCTCTTCGCCAGGTCCTGCTCGTAGCGGATGTACTTGACGGCGGCCATGGCAAAGTTGAGCCCCTGGGCGAGCTG
GATGCCGCGGACGACGGGGAGCGGCACGAACCAGTAGACGAGCTTCATAAGGCGGGTGACCCCGAGGACGAATACGAACG
CCGAGGTGAGGATGCCGGCGGCCATCATCTCGGGGACCCCGAAGGAGGCGTCGGAGAGGGCGACGGCGGCGATGGTCTTC
ATGGGCTGGACGGGCATGGGGACGCCGTAGAGGAGGCCCGCCGCCCAGTGCCCCTCCACCTTCGCCGCCTGGGTTGGTGG
TGCAGGGTTCACCGGAGCAGGAGGGGACGACGCTGGTGGCGCTGGGTTCACTGGTGATGTCGGAGGCGATGTTGGTGGCG
TTGGCTGTGCTGGCGACGAGGAGGAGAAGGAGGCGGAGGACCCGATTGCTTTTTTGAAAAAAAACTAGGGACCCGATTGC
ATTTTTAGCCCGTTTATGTGTGGGGTCGGGCAGTCAGATTCGCGTTTAACCCAGGCAAAGCGAGCAGTTTTCACACTTGG
TAGTTTTTTGTCACGGATTAATAAAAAAGTGGTAGTTTTCGGGACAAAATCGTAAAGTGGTAGTTTTCTGTCACGTTTCC
GCGAATTGTGGTAGTTTTTGGTTAAATACTCGATGACAAGTATTTCCGGACGGAGGGAGTAGTTATTACTCCGCCGCTTT
CTTTCTTGAC----GTATTTGGAGTTGCGGCTGCCGTGCGGGCGTTCCATTTTGCCGATACGGGTGCAGGGGAAGGAAGG
GAAGGGGTGAAGTTCTGCGATCTGTATCTGTAGTAGGGTCTGGTAATTTCGTACTGTAGAGATGAACTGAAAAAATTGAC
CACATATGC-----CTTCCTGCTAACCAGTCAGCTGTGCCAGTCTTGGAAATACCTAACATGTCGTAGTGATTGATACCG
TGCTTCATGATGTATCGAGGTCAA-TC---------AGTCTTAGGAATACCTAACTTGCTGTTATGTGGA------GTAT
TTTATACCGCTTTTGGTAAAAGGAA--AAAAGATCATAGAATGCCTTGCGAAATGATTCAAGGCAAAATATTGTCGAATC
TAC------------------------------------AAAGGAGGAATTTGTATAAGTGCAATCCCCATTGATTGGAA
CCGGCTTTCTGCTGACCAACATACTCAGTTCAAGCTGCAGCACGGCTCAGGAGGCATGGGCCC-TTTTTACAGGAAGGTT
GATGTGATGTTTCTAGACCACGGTGGAGGGAGCAGCACGTTACTGTCTGTCTCAAAACCGG-----TTGCTCTCAATCGT
TATATTTAGAAGACCAACTGATAGGATCGACACTTGAGTTCAGTTCAAAATTGACACACCATAGTCCACATAGTAGTATA
GATAAGTTTTGTTATTTGGCTTATCTGATGCACATATGTGGATCGAATCTGTCATCTGTGGCTTTGCAAAATTGGGATAA
CTGCTAACTGCAAAAGAATCACCTACATGTTAGAAATTTCAGTTGTCCATTTTGTGCGCAACCGCATGCCACTTGAAAAT
ATTTGAGCGGTGACATGGTTGTGGAGAGAGCCCATATGGCATCGGTTGTTGCCATGTTTAGTGAATTGGCAAGGGCACCT
ATCTGTTTATCACTCTCACTGGTTTGCACTGCAGGCATCCTTACCCTTCGTCAAGAAATTCTGGATTGTTCG--------
--------------------------AGAGACAGATTCCCCTAACACCGAGGTTTCGAAACAGAGCAGCACTGGCGACAC
CGACTCTTCTCCAGATGGGCCGCCAGTGCTCACCATTCTGGCCGGTATCGCTGTGTTCTTCCTGCTCTTGTGGATAATCG
GATTGATCTTCACCTGGATCGTTGGTCTGGTCTTTGGGGCTGCGAAATCTTAGATGTTCAGCAATCTTAGGATAGTTCTG
CTCCTTTTCAGTTGTATATACACTTGTTCCCGACTGATGCTTGATGATAGCCCTGGATCATTGCATCCTCTGCTGTCATT
TCCAGCCGAAA-CTCTTGAATAATCGTATCACATATTTCTAGCCAAATTTCATGGATTAACGCGTTTCACGCTGTTATTT
CTGGCTATATCTTT-GGCTCATGGCAGCAAGTGCTGTTATTTTGAAGAACGACAGTGCCTGTGTTGGTTCCATTTCTTCT
TTGCTTGTCTCCGCGCAGGCTAAGAGAATGGGCCCTGGAAATTGAATGCGAATAGGCAAGGGCACCTATCTGTGCCCATA
CGCACATCGGTT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CTCTCCATGTTAAGTGAAATGGCAAGGAAACCTATAT
CAGTATGTCACTCTAGTTGTTTTGTACTGCAGGCATCCTTACCCTTTGGCAAGAAATTCCGGGTGGTTTCAGAATGCAAC
AAGGTTGAGGACAGAAGACCCAAAGAAGACTCTGTTTGCATCAGATTCAGATTCTCCTAGCACCGAGGTTTCAAAACAGA
GCAGCACTGGTGACGCCAGCGCTTCTCCGGATGGCCCGCCAGTCCTCACCATTTTGGCTGGTATCGTTGTGTTCTTCCTG
CTCTTGTGGGTAATCGGATCAATCTTCACCTGGACCGTCGGTCTGGTCTTCGGGGCTGCGAAATCTTAGATGTCCATCAA
TCATAGGATAGTTCTGCACCTTTTCAGTTGTATATACACTTGTCCCTGGCTGCTGTTTGATGATAGCCCTGGATCATTGC
ATCCTCTGCTGTCATTTCCAGCCGAAATTCTTGAATAATTGTATCACATGTTTTAGCGAAATCTCATGGATTACCGCGTT
TCACGCTGTTATTTCTAGC--
>SNPs
-----------------------------------------------S--------------------------------
------------S-S--------SS---------------------S-------------------S-------------
-------------------------------S---------------S----S---S---------S-------------
--S----S-----------S-------S-S----------S-------------S-------------------------
------------------------------------S--------------------------------------S----
------------------------S-------------------------SSS-----S-S--SS-----S-------SS
----SS---SS-----S----------------SS-S-----------------S-----S---------------S---
----S------S--------SS-S-SSSS-SSSSSSSSSSSSS------S------S---S-------------------
-----S--------------------------------------------------S---------S----S-------S
-S-SSS-SSSSSSSSSSSSSSSS------------S----S-----SS--------------S-----------------
S------------------------SS--------S---------S-------S--------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
-----------S-------------------------------------------SSSSSSSSS----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
-----S-S---S----------------------------------------------------------S----SSS-S
SSSSSS---------------------------------S--------S------------------S-SSS--------
------S---------S--S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S--S----
------------------------------------------------------S--S-----S----------------
-------S----S----S----------S---------------------SS--S---S-----------S---S---S-
---S----S-SSS---------------------------S------S-------------------------S------
-----------------------S---SSSSSSSSS-----------------S-SS-------------S----S----
-S-------------S---------SS----S------------------------S----------SS-S-S-SSSSSS
SS-SSSSSSSSSSSSSSS---------SS--SSSSSSSS-----------------------SS-------S--------
SS----------------S--------------------------------------------S----------------
--------------------------------S--------------------S--------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
-SS-------------------------S---------------------------------------------SS----
-S-----------------S--S--------------------------SS-------S---------------S-----
------S--------------S--------------------------S---------------S--------------S
S---S------S--S--------------SS----S--S-----------------------------------S-----
--S-S-------S-------------------------------------SS--------S-------------------
-------------------S------------------------------------------------------------
----------------------------S-S-------------------------------------------------
-----------S----------------------S----------------S-----S----S-----------------
--------------S------------S-------------------------S--------------------------
-S-----------S------------------------------------------S--------SS-------S-----
-----------------S-------------------------SS---------------------SSSSSSSS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSS-S------------S------------------
----S----S-------SSSSSSSSSSSSSSSSSSS----SSS-S-SS--S----S---------S---SS---S-----
-----------SSS-S----------S-S---------------SS-----------S---------SSS-----S----
--------------------------------------------------S-----S--S-S--SSS-SSSS--------
--S-------S--------------------------------S----------------------S---SS-S--S---
----S----------S------------------SSSSSSSSS-SS-S------------------------SSSSS-S-
--------------------------------SSS---------------------------------------------
--------------------------------------------------------------------------------
----------------------------S-------------------------------------SS-SS---------
---------------------
>forward_734
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGACGC
TGACGCTTTGTTTG------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------
>reverse_4245
--------------------------------------------------------------------------------
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----AGAAGAAGGCCCTGTTTGCA--------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------
>forward_3339
--------------------------------------------------------------------------------
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---------------------------------------AGGGTTTGGTAACGTCGCAT---------------------
--------------------------------------------------------------------------------
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---------------------
>reverse_4925
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------TCTCTGTGCGTGTTGGTGTT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
