Multiple sequence alignment - TraesCS4D01G317300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G317300 chr4D 100.000 3999 0 0 1 3999 482256337 482252339 0.000000e+00 7385.0
1 TraesCS4D01G317300 chr4D 87.829 912 64 29 693 1580 482360836 482359948 0.000000e+00 1026.0
2 TraesCS4D01G317300 chr4D 83.118 930 93 30 1684 2587 482359939 482359048 0.000000e+00 789.0
3 TraesCS4D01G317300 chr4D 95.278 360 9 2 1 353 449872734 449873092 7.500000e-157 564.0
4 TraesCS4D01G317300 chr4D 84.880 291 33 7 167 448 505166618 505166330 2.350000e-72 283.0
5 TraesCS4D01G317300 chr4D 77.907 172 27 8 1699 1870 62746478 62746638 3.290000e-16 97.1
6 TraesCS4D01G317300 chr5A 93.804 2195 108 15 1816 3998 660251583 660253761 0.000000e+00 3275.0
7 TraesCS4D01G317300 chr5A 91.643 718 36 11 443 1158 660249977 660250672 0.000000e+00 972.0
8 TraesCS4D01G317300 chr5A 85.730 911 78 30 690 1580 660202789 660203667 0.000000e+00 915.0
9 TraesCS4D01G317300 chr5A 82.465 941 100 34 1675 2587 660203667 660204570 0.000000e+00 763.0
10 TraesCS4D01G317300 chr5A 92.500 360 16 8 1230 1580 660250674 660251031 4.610000e-139 505.0
11 TraesCS4D01G317300 chr4B 92.473 1209 76 9 2795 3999 612176941 612175744 0.000000e+00 1714.0
12 TraesCS4D01G317300 chr4B 92.548 1087 47 14 1681 2759 612178002 612176942 0.000000e+00 1528.0
13 TraesCS4D01G317300 chr4B 86.428 921 57 36 577 1483 612179012 612178146 0.000000e+00 946.0
14 TraesCS4D01G317300 chr4B 84.050 721 42 37 771 1432 612211080 612210374 9.430000e-176 627.0
15 TraesCS4D01G317300 chr4B 81.043 575 64 23 1684 2250 612210277 612209740 2.220000e-112 416.0
16 TraesCS4D01G317300 chr4B 88.764 267 18 6 2306 2569 612209735 612209478 2.320000e-82 316.0
17 TraesCS4D01G317300 chr4B 92.199 141 11 0 443 583 612199814 612199674 2.440000e-47 200.0
18 TraesCS4D01G317300 chr4B 93.939 99 5 1 1482 1580 612178105 612178008 8.950000e-32 148.0
19 TraesCS4D01G317300 chr7D 95.652 345 8 1 1 338 556973105 556973449 7.560000e-152 547.0
20 TraesCS4D01G317300 chr7D 95.894 341 7 1 1 334 17338299 17338639 2.720000e-151 545.0
21 TraesCS4D01G317300 chr7D 95.562 338 6 3 1 330 27600126 27600462 2.120000e-147 532.0
22 TraesCS4D01G317300 chr7D 83.803 284 31 9 170 442 18489118 18489397 5.130000e-64 255.0
23 TraesCS4D01G317300 chr7D 88.000 75 6 3 1604 1677 133495745 133495673 7.120000e-13 86.1
24 TraesCS4D01G317300 chr7D 87.179 78 7 3 1601 1677 133608753 133608828 7.120000e-13 86.1
25 TraesCS4D01G317300 chr5D 91.885 382 27 4 1 379 435656060 435656440 7.610000e-147 531.0
26 TraesCS4D01G317300 chr5D 79.859 283 43 11 167 445 460236823 460237095 1.130000e-45 195.0
27 TraesCS4D01G317300 chr5D 83.616 177 21 6 237 411 535627644 535627474 4.140000e-35 159.0
28 TraesCS4D01G317300 chr5D 85.333 75 8 3 1607 1680 548470717 548470645 1.540000e-09 75.0
29 TraesCS4D01G317300 chr7B 88.889 405 39 3 2 406 72602465 72602863 9.980000e-136 494.0
30 TraesCS4D01G317300 chr7B 91.176 68 4 2 1607 1674 293146542 293146607 1.530000e-14 91.6
31 TraesCS4D01G317300 chr2D 95.932 295 5 1 1 288 95220084 95219790 4.680000e-129 472.0
32 TraesCS4D01G317300 chr2D 90.860 186 17 0 263 448 610453960 610453775 2.390000e-62 250.0
33 TraesCS4D01G317300 chr2D 90.323 186 18 0 263 448 610474309 610474124 1.110000e-60 244.0
34 TraesCS4D01G317300 chr2D 86.842 76 7 3 1607 1679 406705129 406705054 9.210000e-12 82.4
35 TraesCS4D01G317300 chr1D 98.077 260 4 1 1 259 469463332 469463591 6.090000e-123 451.0
36 TraesCS4D01G317300 chr1D 88.732 71 4 4 1607 1673 39952562 39952632 2.560000e-12 84.2
37 TraesCS4D01G317300 chr3B 86.207 406 49 7 2 406 821904924 821905323 2.210000e-117 433.0
38 TraesCS4D01G317300 chrUn 91.444 187 12 4 265 448 95644612 95644427 1.840000e-63 254.0
39 TraesCS4D01G317300 chr2A 80.992 121 14 5 182 299 754111689 754111575 1.980000e-13 87.9
40 TraesCS4D01G317300 chr7A 89.552 67 7 0 1607 1673 681485875 681485941 7.120000e-13 86.1
41 TraesCS4D01G317300 chr6B 89.706 68 4 3 1608 1672 534870087 534870154 2.560000e-12 84.2
42 TraesCS4D01G317300 chr6B 96.970 33 1 0 3896 3928 258934712 258934680 5.580000e-04 56.5
43 TraesCS4D01G317300 chr1A 87.013 77 7 3 1601 1674 438305832 438305908 2.560000e-12 84.2
44 TraesCS4D01G317300 chr6D 88.406 69 6 2 1607 1673 123771526 123771458 9.210000e-12 82.4
45 TraesCS4D01G317300 chr6A 87.838 74 4 5 1607 1677 416178803 416178732 9.210000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G317300 chr4D 482252339 482256337 3998 True 7385.0 7385 100.0000 1 3999 1 chr4D.!!$R1 3998
1 TraesCS4D01G317300 chr4D 482359048 482360836 1788 True 907.5 1026 85.4735 693 2587 2 chr4D.!!$R3 1894
2 TraesCS4D01G317300 chr5A 660249977 660253761 3784 False 1584.0 3275 92.6490 443 3998 3 chr5A.!!$F2 3555
3 TraesCS4D01G317300 chr5A 660202789 660204570 1781 False 839.0 915 84.0975 690 2587 2 chr5A.!!$F1 1897
4 TraesCS4D01G317300 chr4B 612175744 612179012 3268 True 1084.0 1714 91.3470 577 3999 4 chr4B.!!$R2 3422
5 TraesCS4D01G317300 chr4B 612209478 612211080 1602 True 453.0 627 84.6190 771 2569 3 chr4B.!!$R3 1798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.037605 AAACTAAGCCGACGACCAGG 60.038 55.0 0.0 0.0 0.0 4.45 F
1748 1892 0.035439 GCCGATTTTGTGGGAGGAGA 60.035 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 1907 0.032952 TCGTCCAACCGTTTCTCCTG 59.967 55.000 0.00 0.0 0.0 3.86 R
3545 4153 1.003355 CGACATGTGGGCTCAAGGT 60.003 57.895 1.15 0.0 0.0 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.409851 TGCTTTGCGATGCTTCTTATG 57.590 42.857 12.65 0.00 0.00 1.90
23 24 3.009026 TGCTTTGCGATGCTTCTTATGA 58.991 40.909 12.65 0.00 0.00 2.15
24 25 3.628942 TGCTTTGCGATGCTTCTTATGAT 59.371 39.130 12.65 0.00 0.00 2.45
25 26 3.973135 GCTTTGCGATGCTTCTTATGATG 59.027 43.478 4.58 0.00 0.00 3.07
26 27 4.497006 GCTTTGCGATGCTTCTTATGATGT 60.497 41.667 4.58 0.00 0.00 3.06
27 28 4.541085 TTGCGATGCTTCTTATGATGTG 57.459 40.909 0.00 0.00 0.00 3.21
28 29 3.534554 TGCGATGCTTCTTATGATGTGT 58.465 40.909 0.00 0.00 0.00 3.72
29 30 3.310501 TGCGATGCTTCTTATGATGTGTG 59.689 43.478 0.00 0.00 0.00 3.82
30 31 3.557185 GCGATGCTTCTTATGATGTGTGA 59.443 43.478 0.00 0.00 0.00 3.58
31 32 4.212847 GCGATGCTTCTTATGATGTGTGAT 59.787 41.667 0.00 0.00 0.00 3.06
32 33 5.676953 CGATGCTTCTTATGATGTGTGATG 58.323 41.667 0.00 0.00 0.00 3.07
33 34 5.464389 CGATGCTTCTTATGATGTGTGATGA 59.536 40.000 0.00 0.00 0.00 2.92
34 35 6.147328 CGATGCTTCTTATGATGTGTGATGAT 59.853 38.462 0.00 0.00 0.00 2.45
35 36 6.613755 TGCTTCTTATGATGTGTGATGATG 57.386 37.500 0.00 0.00 0.00 3.07
36 37 6.350906 TGCTTCTTATGATGTGTGATGATGA 58.649 36.000 0.00 0.00 0.00 2.92
37 38 6.824704 TGCTTCTTATGATGTGTGATGATGAA 59.175 34.615 0.00 0.00 0.00 2.57
38 39 7.501225 TGCTTCTTATGATGTGTGATGATGAAT 59.499 33.333 0.00 0.00 0.00 2.57
39 40 8.350722 GCTTCTTATGATGTGTGATGATGAATT 58.649 33.333 0.00 0.00 0.00 2.17
42 43 9.181061 TCTTATGATGTGTGATGATGAATTTGT 57.819 29.630 0.00 0.00 0.00 2.83
43 44 9.797556 CTTATGATGTGTGATGATGAATTTGTT 57.202 29.630 0.00 0.00 0.00 2.83
44 45 9.575783 TTATGATGTGTGATGATGAATTTGTTG 57.424 29.630 0.00 0.00 0.00 3.33
45 46 6.983984 TGATGTGTGATGATGAATTTGTTGT 58.016 32.000 0.00 0.00 0.00 3.32
46 47 6.864165 TGATGTGTGATGATGAATTTGTTGTG 59.136 34.615 0.00 0.00 0.00 3.33
47 48 6.146601 TGTGTGATGATGAATTTGTTGTGT 57.853 33.333 0.00 0.00 0.00 3.72
48 49 5.978322 TGTGTGATGATGAATTTGTTGTGTG 59.022 36.000 0.00 0.00 0.00 3.82
49 50 6.183360 TGTGTGATGATGAATTTGTTGTGTGA 60.183 34.615 0.00 0.00 0.00 3.58
50 51 6.864685 GTGTGATGATGAATTTGTTGTGTGAT 59.135 34.615 0.00 0.00 0.00 3.06
51 52 6.864165 TGTGATGATGAATTTGTTGTGTGATG 59.136 34.615 0.00 0.00 0.00 3.07
52 53 5.865013 TGATGATGAATTTGTTGTGTGATGC 59.135 36.000 0.00 0.00 0.00 3.91
53 54 5.456548 TGATGAATTTGTTGTGTGATGCT 57.543 34.783 0.00 0.00 0.00 3.79
54 55 5.224135 TGATGAATTTGTTGTGTGATGCTG 58.776 37.500 0.00 0.00 0.00 4.41
55 56 3.382855 TGAATTTGTTGTGTGATGCTGC 58.617 40.909 0.00 0.00 0.00 5.25
56 57 3.068448 TGAATTTGTTGTGTGATGCTGCT 59.932 39.130 0.00 0.00 0.00 4.24
57 58 2.780065 TTTGTTGTGTGATGCTGCTC 57.220 45.000 0.00 0.00 0.00 4.26
58 59 0.953727 TTGTTGTGTGATGCTGCTCC 59.046 50.000 0.00 0.00 0.00 4.70
59 60 0.109153 TGTTGTGTGATGCTGCTCCT 59.891 50.000 0.00 0.00 0.00 3.69
60 61 1.242076 GTTGTGTGATGCTGCTCCTT 58.758 50.000 0.00 0.00 0.00 3.36
61 62 2.224499 TGTTGTGTGATGCTGCTCCTTA 60.224 45.455 0.00 0.00 0.00 2.69
62 63 3.012518 GTTGTGTGATGCTGCTCCTTAT 58.987 45.455 0.00 0.00 0.00 1.73
63 64 3.354948 TGTGTGATGCTGCTCCTTATT 57.645 42.857 0.00 0.00 0.00 1.40
64 65 3.011818 TGTGTGATGCTGCTCCTTATTG 58.988 45.455 0.00 0.00 0.00 1.90
65 66 3.012518 GTGTGATGCTGCTCCTTATTGT 58.987 45.455 0.00 0.00 0.00 2.71
66 67 3.441572 GTGTGATGCTGCTCCTTATTGTT 59.558 43.478 0.00 0.00 0.00 2.83
67 68 4.635765 GTGTGATGCTGCTCCTTATTGTTA 59.364 41.667 0.00 0.00 0.00 2.41
68 69 5.297776 GTGTGATGCTGCTCCTTATTGTTAT 59.702 40.000 0.00 0.00 0.00 1.89
69 70 5.297527 TGTGATGCTGCTCCTTATTGTTATG 59.702 40.000 0.00 0.00 0.00 1.90
70 71 5.297776 GTGATGCTGCTCCTTATTGTTATGT 59.702 40.000 0.00 0.00 0.00 2.29
71 72 5.297527 TGATGCTGCTCCTTATTGTTATGTG 59.702 40.000 0.00 0.00 0.00 3.21
72 73 4.842574 TGCTGCTCCTTATTGTTATGTGA 58.157 39.130 0.00 0.00 0.00 3.58
73 74 5.439721 TGCTGCTCCTTATTGTTATGTGAT 58.560 37.500 0.00 0.00 0.00 3.06
74 75 5.297527 TGCTGCTCCTTATTGTTATGTGATG 59.702 40.000 0.00 0.00 0.00 3.07
75 76 5.755813 CTGCTCCTTATTGTTATGTGATGC 58.244 41.667 0.00 0.00 0.00 3.91
76 77 5.192176 TGCTCCTTATTGTTATGTGATGCA 58.808 37.500 0.00 0.00 0.00 3.96
77 78 5.829391 TGCTCCTTATTGTTATGTGATGCAT 59.171 36.000 0.00 0.00 41.42 3.96
78 79 6.997476 TGCTCCTTATTGTTATGTGATGCATA 59.003 34.615 0.00 0.00 38.94 3.14
79 80 7.666804 TGCTCCTTATTGTTATGTGATGCATAT 59.333 33.333 0.00 0.00 39.56 1.78
80 81 9.166173 GCTCCTTATTGTTATGTGATGCATATA 57.834 33.333 0.00 0.00 39.56 0.86
106 107 8.953368 TTGCTGTATGATCCTTATATATGCTG 57.047 34.615 0.00 0.00 0.00 4.41
107 108 8.082672 TGCTGTATGATCCTTATATATGCTGT 57.917 34.615 0.00 0.00 0.00 4.40
108 109 9.200817 TGCTGTATGATCCTTATATATGCTGTA 57.799 33.333 0.00 0.00 0.00 2.74
140 141 9.376075 TCAAATGAATTGAGCTAAAACAAAACA 57.624 25.926 0.00 0.00 43.08 2.83
141 142 9.640974 CAAATGAATTGAGCTAAAACAAAACAG 57.359 29.630 0.00 0.00 41.85 3.16
142 143 9.598517 AAATGAATTGAGCTAAAACAAAACAGA 57.401 25.926 0.00 0.00 0.00 3.41
143 144 9.598517 AATGAATTGAGCTAAAACAAAACAGAA 57.401 25.926 0.00 0.00 0.00 3.02
144 145 8.994429 TGAATTGAGCTAAAACAAAACAGAAA 57.006 26.923 0.00 0.00 0.00 2.52
145 146 9.429359 TGAATTGAGCTAAAACAAAACAGAAAA 57.571 25.926 0.00 0.00 0.00 2.29
176 177 4.749245 AAAACAGACAGAAACTATGCCG 57.251 40.909 0.00 0.00 0.00 5.69
177 178 3.678056 AACAGACAGAAACTATGCCGA 57.322 42.857 0.00 0.00 0.00 5.54
178 179 2.960819 ACAGACAGAAACTATGCCGAC 58.039 47.619 0.00 0.00 0.00 4.79
179 180 1.920574 CAGACAGAAACTATGCCGACG 59.079 52.381 0.00 0.00 0.00 5.12
180 181 1.135083 AGACAGAAACTATGCCGACGG 60.135 52.381 10.29 10.29 0.00 4.79
208 209 2.501128 GGCATAGAGCTGGCGTGA 59.499 61.111 0.00 0.00 44.79 4.35
209 210 1.593750 GGCATAGAGCTGGCGTGAG 60.594 63.158 0.00 0.00 44.79 3.51
221 222 3.699894 CGTGAGCTCCCAGTGGCT 61.700 66.667 12.15 0.00 41.88 4.75
222 223 2.046507 GTGAGCTCCCAGTGGCTG 60.047 66.667 12.15 0.00 39.05 4.85
223 224 2.203832 TGAGCTCCCAGTGGCTGA 60.204 61.111 12.15 0.00 39.05 4.26
224 225 2.267324 GAGCTCCCAGTGGCTGAC 59.733 66.667 2.61 0.00 39.05 3.51
225 226 2.527624 AGCTCCCAGTGGCTGACA 60.528 61.111 2.61 0.00 37.41 3.58
238 239 4.184439 TGACACGTGGCAGGTCTA 57.816 55.556 23.03 0.00 32.84 2.59
239 240 2.666085 TGACACGTGGCAGGTCTAT 58.334 52.632 23.03 0.00 32.84 1.98
240 241 0.246360 TGACACGTGGCAGGTCTATG 59.754 55.000 23.03 1.87 32.84 2.23
241 242 1.079127 ACACGTGGCAGGTCTATGC 60.079 57.895 21.57 0.00 45.74 3.14
247 248 2.279517 GCAGGTCTATGCCGACGG 60.280 66.667 10.29 10.29 40.43 4.79
263 264 2.263540 GGCCTAGCCGTCGTTCAA 59.736 61.111 0.00 0.00 39.62 2.69
264 265 1.375013 GGCCTAGCCGTCGTTCAAA 60.375 57.895 0.00 0.00 39.62 2.69
265 266 1.632948 GGCCTAGCCGTCGTTCAAAC 61.633 60.000 0.00 0.00 39.62 2.93
266 267 0.669625 GCCTAGCCGTCGTTCAAACT 60.670 55.000 0.00 0.00 0.00 2.66
267 268 1.403249 GCCTAGCCGTCGTTCAAACTA 60.403 52.381 0.00 0.00 0.00 2.24
268 269 2.927871 GCCTAGCCGTCGTTCAAACTAA 60.928 50.000 0.00 0.00 0.00 2.24
269 270 2.921754 CCTAGCCGTCGTTCAAACTAAG 59.078 50.000 0.00 0.00 0.00 2.18
270 271 1.145803 AGCCGTCGTTCAAACTAAGC 58.854 50.000 0.00 0.00 0.00 3.09
271 272 0.165295 GCCGTCGTTCAAACTAAGCC 59.835 55.000 0.00 0.00 0.00 4.35
272 273 0.437295 CCGTCGTTCAAACTAAGCCG 59.563 55.000 0.00 0.00 0.00 5.52
273 274 1.411394 CGTCGTTCAAACTAAGCCGA 58.589 50.000 0.00 0.00 0.00 5.54
274 275 1.123756 CGTCGTTCAAACTAAGCCGAC 59.876 52.381 0.00 0.00 40.75 4.79
275 276 1.123756 GTCGTTCAAACTAAGCCGACG 59.876 52.381 0.00 0.00 35.91 5.12
276 277 1.001487 TCGTTCAAACTAAGCCGACGA 60.001 47.619 0.00 0.00 35.93 4.20
277 278 1.123756 CGTTCAAACTAAGCCGACGAC 59.876 52.381 0.00 0.00 0.00 4.34
278 279 1.458445 GTTCAAACTAAGCCGACGACC 59.542 52.381 0.00 0.00 0.00 4.79
279 280 0.675083 TCAAACTAAGCCGACGACCA 59.325 50.000 0.00 0.00 0.00 4.02
280 281 1.068474 CAAACTAAGCCGACGACCAG 58.932 55.000 0.00 0.00 0.00 4.00
281 282 0.037605 AAACTAAGCCGACGACCAGG 60.038 55.000 0.00 0.00 0.00 4.45
316 317 2.612115 CCCCAGGAGAGCCCAGTT 60.612 66.667 0.00 0.00 37.41 3.16
317 318 2.673523 CCCAGGAGAGCCCAGTTG 59.326 66.667 0.00 0.00 37.41 3.16
318 319 2.045536 CCAGGAGAGCCCAGTTGC 60.046 66.667 0.00 0.00 37.41 4.17
319 320 2.600729 CCAGGAGAGCCCAGTTGCT 61.601 63.158 0.00 0.00 46.37 3.91
320 321 1.376942 CAGGAGAGCCCAGTTGCTG 60.377 63.158 0.00 0.00 42.95 4.41
321 322 2.749441 GGAGAGCCCAGTTGCTGC 60.749 66.667 0.00 0.00 42.95 5.25
322 323 2.749441 GAGAGCCCAGTTGCTGCC 60.749 66.667 0.00 0.00 42.95 4.85
323 324 3.557903 GAGAGCCCAGTTGCTGCCA 62.558 63.158 0.00 0.00 42.95 4.92
324 325 3.368571 GAGCCCAGTTGCTGCCAC 61.369 66.667 0.00 0.00 42.95 5.01
325 326 4.208403 AGCCCAGTTGCTGCCACA 62.208 61.111 6.63 0.00 40.90 4.17
326 327 2.993264 GCCCAGTTGCTGCCACAT 60.993 61.111 6.63 0.00 0.00 3.21
327 328 2.967397 CCCAGTTGCTGCCACATG 59.033 61.111 6.63 0.00 0.00 3.21
328 329 2.642254 CCCAGTTGCTGCCACATGG 61.642 63.158 6.63 10.10 38.53 3.66
338 339 4.169271 CCACATGGCAGGCCTATG 57.831 61.111 3.98 8.97 36.94 2.23
339 340 2.198287 CCACATGGCAGGCCTATGC 61.198 63.158 3.98 6.70 45.74 3.14
370 371 2.520686 CCGTCGGCATAGTTTCAAAC 57.479 50.000 0.00 0.00 0.00 2.93
371 372 2.073816 CCGTCGGCATAGTTTCAAACT 58.926 47.619 8.15 8.15 45.40 2.66
373 374 3.680937 CCGTCGGCATAGTTTCAAACTAA 59.319 43.478 14.02 0.00 46.24 2.24
374 375 4.201685 CCGTCGGCATAGTTTCAAACTAAG 60.202 45.833 14.02 10.82 46.24 2.18
381 382 5.810525 CATAGTTTCAAACTAAGCCGATGG 58.189 41.667 14.02 0.00 46.24 3.51
382 383 2.488153 AGTTTCAAACTAAGCCGATGGC 59.512 45.455 0.00 0.00 44.55 4.40
383 384 4.675402 AGTTTCAAACTAAGCCGATGGCC 61.675 47.826 0.00 0.00 45.02 5.36
384 385 7.776955 TAGTTTCAAACTAAGCCGATGGCCA 62.777 44.000 8.56 8.56 45.64 5.36
404 405 2.279517 CCGTCGGCATAGGACTGC 60.280 66.667 0.00 0.00 41.53 4.40
410 411 3.799753 GCATAGGACTGCCACGTG 58.200 61.111 9.08 9.08 36.10 4.49
411 412 1.815421 GCATAGGACTGCCACGTGG 60.815 63.158 30.66 30.66 36.10 4.94
428 429 3.966215 GCTAGCAAGCGTTGGTCA 58.034 55.556 10.63 0.00 42.20 4.02
429 430 1.790387 GCTAGCAAGCGTTGGTCAG 59.210 57.895 10.63 4.79 42.20 3.51
430 431 1.790387 CTAGCAAGCGTTGGTCAGC 59.210 57.895 5.85 0.00 42.20 4.26
431 432 0.950555 CTAGCAAGCGTTGGTCAGCA 60.951 55.000 5.85 0.00 42.20 4.41
432 433 1.227999 TAGCAAGCGTTGGTCAGCAC 61.228 55.000 5.85 0.00 42.20 4.40
433 434 2.546494 GCAAGCGTTGGTCAGCACT 61.546 57.895 0.00 0.00 35.48 4.40
434 435 2.024918 CAAGCGTTGGTCAGCACTT 58.975 52.632 0.00 0.00 35.48 3.16
435 436 0.317269 CAAGCGTTGGTCAGCACTTG 60.317 55.000 2.25 2.25 35.48 3.16
436 437 0.463654 AAGCGTTGGTCAGCACTTGA 60.464 50.000 0.00 0.00 35.48 3.02
455 456 2.814835 CGGCGGCCCCCTACTTTAT 61.815 63.158 14.55 0.00 0.00 1.40
459 460 1.129058 CGGCCCCCTACTTTATGTCT 58.871 55.000 0.00 0.00 0.00 3.41
484 485 9.268268 CTTAGGGTTAATTAATTAGTCGCATGA 57.732 33.333 20.35 10.33 0.00 3.07
508 509 4.957296 ACTGAAGTTGACGGTCTAACATT 58.043 39.130 18.72 12.64 0.00 2.71
517 518 6.055231 TGACGGTCTAACATTTTGAACAAG 57.945 37.500 9.88 0.00 0.00 3.16
518 519 5.008217 TGACGGTCTAACATTTTGAACAAGG 59.992 40.000 9.88 0.00 0.00 3.61
524 525 7.262048 GTCTAACATTTTGAACAAGGTTTGGA 58.738 34.615 0.00 0.00 34.12 3.53
637 638 6.340522 AGAAAACAGAAATTTCCAACCACTG 58.659 36.000 14.61 7.12 37.47 3.66
728 729 7.015974 AGCTTGAGAATTCCTTTTCCTTGAAAT 59.984 33.333 0.65 0.00 31.34 2.17
815 818 1.000955 AGCTCAACTTGACGGTACAGG 59.999 52.381 0.00 0.00 0.00 4.00
837 840 0.321996 AGAAGTCTGAAACCGCTCCC 59.678 55.000 0.00 0.00 0.00 4.30
964 971 3.246463 ACCAAAATAAACCAAAAAGCGCG 59.754 39.130 0.00 0.00 0.00 6.86
982 989 3.424529 GCGCGTACACCTAATCTGTAATC 59.575 47.826 8.43 0.00 0.00 1.75
1055 1062 1.591327 CAGCAAACAACAACCGGCC 60.591 57.895 0.00 0.00 0.00 6.13
1058 1065 3.220658 AAACAACAACCGGCCGGG 61.221 61.111 44.99 31.45 43.62 5.73
1072 1135 2.701780 CCGGGTCACACGAGAGAGG 61.702 68.421 0.00 0.00 0.00 3.69
1075 1138 0.684805 GGGTCACACGAGAGAGGGAT 60.685 60.000 0.00 0.00 36.27 3.85
1086 1149 3.578716 CGAGAGAGGGATAGAGAGAGAGT 59.421 52.174 0.00 0.00 0.00 3.24
1094 1157 4.319177 GGATAGAGAGAGAGTGAGAGAGC 58.681 52.174 0.00 0.00 0.00 4.09
1111 1181 0.686112 AGCGAAAGGAGGAGGAGGAG 60.686 60.000 0.00 0.00 0.00 3.69
1118 1190 1.454295 GAGGAGGAGGAGGACGACC 60.454 68.421 0.00 0.00 0.00 4.79
1120 1192 2.053277 GGAGGAGGAGGACGACCAC 61.053 68.421 6.71 0.00 38.94 4.16
1128 1200 4.436998 GGACGACCACGAGCAGGG 62.437 72.222 0.00 0.00 42.66 4.45
1371 1464 3.887110 ACAGTGTGTGTGTGCTACTACTA 59.113 43.478 0.00 0.00 38.28 1.82
1456 1551 5.054477 GGCTATTACGCTTAGATGAAACCA 58.946 41.667 0.00 0.00 0.00 3.67
1520 1664 6.459923 AGCTCAATTTATCGTTAGGATCTCC 58.540 40.000 0.00 0.00 36.55 3.71
1584 1728 9.709495 ATCAAAAGCTAAGTCAAATTTAATGCA 57.291 25.926 0.00 0.00 0.00 3.96
1585 1729 9.539825 TCAAAAGCTAAGTCAAATTTAATGCAA 57.460 25.926 0.00 0.00 0.00 4.08
1586 1730 9.801714 CAAAAGCTAAGTCAAATTTAATGCAAG 57.198 29.630 0.00 0.00 0.00 4.01
1587 1731 9.762933 AAAAGCTAAGTCAAATTTAATGCAAGA 57.237 25.926 0.00 0.00 0.00 3.02
1588 1732 9.933723 AAAGCTAAGTCAAATTTAATGCAAGAT 57.066 25.926 0.00 0.00 0.00 2.40
1595 1739 9.630098 AGTCAAATTTAATGCAAGATAACAGTG 57.370 29.630 0.00 0.00 0.00 3.66
1596 1740 9.624697 GTCAAATTTAATGCAAGATAACAGTGA 57.375 29.630 0.00 0.00 0.00 3.41
1602 1746 6.690194 AATGCAAGATAACAGTGATCTTCC 57.310 37.500 10.01 2.52 40.83 3.46
1603 1747 4.183865 TGCAAGATAACAGTGATCTTCCG 58.816 43.478 10.01 2.50 40.83 4.30
1604 1748 3.001736 GCAAGATAACAGTGATCTTCCGC 59.998 47.826 10.01 8.36 40.83 5.54
1605 1749 4.183865 CAAGATAACAGTGATCTTCCGCA 58.816 43.478 10.01 0.00 40.83 5.69
1606 1750 4.052159 AGATAACAGTGATCTTCCGCAG 57.948 45.455 0.00 0.00 28.94 5.18
1607 1751 3.701542 AGATAACAGTGATCTTCCGCAGA 59.298 43.478 0.00 0.00 35.33 4.26
1608 1752 2.376808 AACAGTGATCTTCCGCAGAG 57.623 50.000 0.00 0.00 33.87 3.35
1609 1753 0.534412 ACAGTGATCTTCCGCAGAGG 59.466 55.000 0.00 0.00 42.97 3.69
1610 1754 0.179089 CAGTGATCTTCCGCAGAGGG 60.179 60.000 0.00 0.00 41.52 4.30
1611 1755 0.616111 AGTGATCTTCCGCAGAGGGT 60.616 55.000 0.00 0.00 41.52 4.34
1612 1756 0.250513 GTGATCTTCCGCAGAGGGTT 59.749 55.000 0.00 0.00 41.52 4.11
1613 1757 0.537188 TGATCTTCCGCAGAGGGTTC 59.463 55.000 0.00 0.00 41.52 3.62
1614 1758 0.827368 GATCTTCCGCAGAGGGTTCT 59.173 55.000 0.00 0.00 41.52 3.01
1615 1759 0.827368 ATCTTCCGCAGAGGGTTCTC 59.173 55.000 0.00 0.00 41.52 2.87
1616 1760 1.153745 CTTCCGCAGAGGGTTCTCG 60.154 63.158 0.00 0.00 44.47 4.04
1617 1761 1.878656 CTTCCGCAGAGGGTTCTCGT 61.879 60.000 0.00 0.00 44.47 4.18
1618 1762 0.609957 TTCCGCAGAGGGTTCTCGTA 60.610 55.000 0.00 0.00 44.47 3.43
1619 1763 1.139095 CCGCAGAGGGTTCTCGTAC 59.861 63.158 0.00 0.00 44.47 3.67
1620 1764 1.139095 CGCAGAGGGTTCTCGTACC 59.861 63.158 0.00 0.00 44.47 3.34
1648 1792 6.735678 TTTCTCTTTAATGCAAGATACGCA 57.264 33.333 0.00 0.00 44.94 5.24
1731 1875 8.221766 GCTATATGTAAGTTTACTGAATTCGCC 58.778 37.037 0.04 0.00 34.77 5.54
1732 1876 4.914312 TGTAAGTTTACTGAATTCGCCG 57.086 40.909 0.04 0.00 34.77 6.46
1733 1877 4.558178 TGTAAGTTTACTGAATTCGCCGA 58.442 39.130 0.04 0.00 34.77 5.54
1736 1880 5.622770 AAGTTTACTGAATTCGCCGATTT 57.377 34.783 0.04 0.00 0.00 2.17
1738 1882 5.390613 AGTTTACTGAATTCGCCGATTTTG 58.609 37.500 0.04 0.00 0.00 2.44
1740 1884 3.201726 ACTGAATTCGCCGATTTTGTG 57.798 42.857 0.04 0.00 0.00 3.33
1741 1885 2.095263 ACTGAATTCGCCGATTTTGTGG 60.095 45.455 0.04 0.00 0.00 4.17
1743 1887 1.470890 GAATTCGCCGATTTTGTGGGA 59.529 47.619 0.00 0.00 0.00 4.37
1744 1888 1.094785 ATTCGCCGATTTTGTGGGAG 58.905 50.000 0.00 0.00 0.00 4.30
1745 1889 0.958382 TTCGCCGATTTTGTGGGAGG 60.958 55.000 0.00 0.00 0.00 4.30
1746 1890 1.376683 CGCCGATTTTGTGGGAGGA 60.377 57.895 0.00 0.00 0.00 3.71
1747 1891 1.369091 CGCCGATTTTGTGGGAGGAG 61.369 60.000 0.00 0.00 0.00 3.69
1748 1892 0.035439 GCCGATTTTGTGGGAGGAGA 60.035 55.000 0.00 0.00 0.00 3.71
1749 1893 1.613255 GCCGATTTTGTGGGAGGAGAA 60.613 52.381 0.00 0.00 0.00 2.87
1750 1894 2.790433 CCGATTTTGTGGGAGGAGAAA 58.210 47.619 0.00 0.00 0.00 2.52
1751 1895 2.488153 CCGATTTTGTGGGAGGAGAAAC 59.512 50.000 0.00 0.00 0.00 2.78
1752 1896 2.159627 CGATTTTGTGGGAGGAGAAACG 59.840 50.000 0.00 0.00 0.00 3.60
1763 1907 1.886542 AGGAGAAACGGATTTTGTGGC 59.113 47.619 0.00 0.00 0.00 5.01
1791 1935 1.145803 CGGTTGGACGAGGAAGAAAC 58.854 55.000 0.00 0.00 35.47 2.78
1811 1955 7.293828 AGAAACCTGGAGAAAGAAGAAAGAAT 58.706 34.615 0.00 0.00 0.00 2.40
1972 2537 7.287696 ACAAAGGAAAAACATGTGGATTCTAGT 59.712 33.333 0.00 0.84 0.00 2.57
2089 2663 4.697514 AGCACAATACAAGATCGTAGCAT 58.302 39.130 0.00 0.00 0.00 3.79
2090 2664 5.118990 AGCACAATACAAGATCGTAGCATT 58.881 37.500 0.00 0.00 0.00 3.56
2159 2733 5.221864 CCTTTTATTCTAGACGGGGCCTAAT 60.222 44.000 0.84 0.00 0.00 1.73
2304 2891 8.677148 TCAAAATAGAATACCTTAGTGGATGC 57.323 34.615 0.00 0.00 39.71 3.91
2639 3244 6.707440 TCACATGAGAAACTTTTTAGGCAA 57.293 33.333 0.00 0.00 0.00 4.52
2724 3330 6.421202 TCCCATTACAAAAATGTTAACAACGC 59.579 34.615 13.23 0.00 0.00 4.84
2761 3368 4.032960 TCAGGCAATTACTGGTGATTGT 57.967 40.909 15.92 0.00 38.39 2.71
2822 3429 2.749044 CTGTGCCGCTTGCCATCT 60.749 61.111 0.00 0.00 40.16 2.90
2907 3515 8.126871 TGACTCGTTAATGATTTATGTACTGC 57.873 34.615 0.00 0.00 0.00 4.40
2920 3528 8.970691 ATTTATGTACTGCAGTTCATGTTTTC 57.029 30.769 35.64 14.10 36.82 2.29
2933 3541 6.201044 AGTTCATGTTTTCTTCAGACACGTAG 59.799 38.462 0.00 0.00 0.00 3.51
2948 3556 7.335171 TCAGACACGTAGCTTTTATGTACTCTA 59.665 37.037 0.00 0.00 0.00 2.43
3157 3765 4.534500 TGCCAAGACTAAGAACCCAAGATA 59.466 41.667 0.00 0.00 0.00 1.98
3220 3828 5.408299 TCTGTATTGTTCATCCAACTTGTCG 59.592 40.000 0.00 0.00 35.79 4.35
3398 4006 3.559655 TGACAACTCTTGTTCATCAACCG 59.440 43.478 0.00 0.00 45.52 4.44
3425 4033 4.386867 TTGATTTGTAGACTAGCCTCGG 57.613 45.455 0.00 0.00 0.00 4.63
3455 4063 7.882791 ACTTCAATTCACCACTATATTGTGTGA 59.117 33.333 14.81 14.27 36.38 3.58
3475 4083 1.134560 AGAGGCTTGTCGGTCGATAAC 59.865 52.381 0.00 0.00 0.00 1.89
3637 4245 0.547471 TGGTGCCCCAAGAGATCTCA 60.547 55.000 24.39 0.00 37.98 3.27
3706 4318 3.265489 ACCTATTTTGGGAGACTTGGGA 58.735 45.455 0.00 0.00 0.00 4.37
3741 4353 2.911143 CCCATGCGTCCTAGGCTT 59.089 61.111 2.96 0.00 0.00 4.35
3742 4354 1.227674 CCCATGCGTCCTAGGCTTC 60.228 63.158 2.96 0.00 0.00 3.86
3749 4361 1.139095 GTCCTAGGCTTCGGACACG 59.861 63.158 23.09 0.00 46.98 4.49
3768 4380 3.182996 GTTGAGGGGGTGTGGGGT 61.183 66.667 0.00 0.00 0.00 4.95
3806 4418 1.299648 CACCTCTTCGCCCCAATGA 59.700 57.895 0.00 0.00 0.00 2.57
3825 4437 7.340743 CCCAATGACTTATATACACCCAAAACA 59.659 37.037 0.00 0.00 0.00 2.83
3885 4502 5.403246 GTGATGTATTACGAGGCTATCCAG 58.597 45.833 0.00 0.00 33.74 3.86
3907 4524 0.469070 CAATGCTCTCTCAGAGGGGG 59.531 60.000 2.96 0.00 42.54 5.40
3926 4546 3.499918 GGGGAAATCATCATCGTCATCAC 59.500 47.826 0.00 0.00 0.00 3.06
3965 4585 2.868583 CTCCCAAGATAATGTGTGAGCG 59.131 50.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.815846 TCATAAGAAGCATCGCAAAGCATA 59.184 37.500 0.00 0.00 0.00 3.14
1 2 3.628942 TCATAAGAAGCATCGCAAAGCAT 59.371 39.130 0.00 0.00 0.00 3.79
2 3 3.009026 TCATAAGAAGCATCGCAAAGCA 58.991 40.909 0.00 0.00 0.00 3.91
3 4 3.680642 TCATAAGAAGCATCGCAAAGC 57.319 42.857 0.00 0.00 0.00 3.51
4 5 4.968181 CACATCATAAGAAGCATCGCAAAG 59.032 41.667 0.00 0.00 0.00 2.77
5 6 4.395854 ACACATCATAAGAAGCATCGCAAA 59.604 37.500 0.00 0.00 0.00 3.68
6 7 3.940852 ACACATCATAAGAAGCATCGCAA 59.059 39.130 0.00 0.00 0.00 4.85
7 8 3.310501 CACACATCATAAGAAGCATCGCA 59.689 43.478 0.00 0.00 0.00 5.10
8 9 3.557185 TCACACATCATAAGAAGCATCGC 59.443 43.478 0.00 0.00 0.00 4.58
9 10 5.464389 TCATCACACATCATAAGAAGCATCG 59.536 40.000 0.00 0.00 0.00 3.84
10 11 6.856135 TCATCACACATCATAAGAAGCATC 57.144 37.500 0.00 0.00 0.00 3.91
11 12 6.996282 TCATCATCACACATCATAAGAAGCAT 59.004 34.615 0.00 0.00 0.00 3.79
12 13 6.350906 TCATCATCACACATCATAAGAAGCA 58.649 36.000 0.00 0.00 0.00 3.91
13 14 6.856135 TCATCATCACACATCATAAGAAGC 57.144 37.500 0.00 0.00 0.00 3.86
16 17 9.181061 ACAAATTCATCATCACACATCATAAGA 57.819 29.630 0.00 0.00 0.00 2.10
17 18 9.797556 AACAAATTCATCATCACACATCATAAG 57.202 29.630 0.00 0.00 0.00 1.73
18 19 9.575783 CAACAAATTCATCATCACACATCATAA 57.424 29.630 0.00 0.00 0.00 1.90
19 20 8.741841 ACAACAAATTCATCATCACACATCATA 58.258 29.630 0.00 0.00 0.00 2.15
20 21 7.544217 CACAACAAATTCATCATCACACATCAT 59.456 33.333 0.00 0.00 0.00 2.45
21 22 6.864165 CACAACAAATTCATCATCACACATCA 59.136 34.615 0.00 0.00 0.00 3.07
22 23 6.864685 ACACAACAAATTCATCATCACACATC 59.135 34.615 0.00 0.00 0.00 3.06
23 24 6.643360 CACACAACAAATTCATCATCACACAT 59.357 34.615 0.00 0.00 0.00 3.21
24 25 5.978322 CACACAACAAATTCATCATCACACA 59.022 36.000 0.00 0.00 0.00 3.72
25 26 6.207928 TCACACAACAAATTCATCATCACAC 58.792 36.000 0.00 0.00 0.00 3.82
26 27 6.388435 TCACACAACAAATTCATCATCACA 57.612 33.333 0.00 0.00 0.00 3.58
27 28 6.183360 GCATCACACAACAAATTCATCATCAC 60.183 38.462 0.00 0.00 0.00 3.06
28 29 5.865013 GCATCACACAACAAATTCATCATCA 59.135 36.000 0.00 0.00 0.00 3.07
29 30 6.034577 CAGCATCACACAACAAATTCATCATC 59.965 38.462 0.00 0.00 0.00 2.92
30 31 5.867174 CAGCATCACACAACAAATTCATCAT 59.133 36.000 0.00 0.00 0.00 2.45
31 32 5.224135 CAGCATCACACAACAAATTCATCA 58.776 37.500 0.00 0.00 0.00 3.07
32 33 4.090930 GCAGCATCACACAACAAATTCATC 59.909 41.667 0.00 0.00 0.00 2.92
33 34 3.991773 GCAGCATCACACAACAAATTCAT 59.008 39.130 0.00 0.00 0.00 2.57
34 35 3.068448 AGCAGCATCACACAACAAATTCA 59.932 39.130 0.00 0.00 0.00 2.57
35 36 3.645884 AGCAGCATCACACAACAAATTC 58.354 40.909 0.00 0.00 0.00 2.17
36 37 3.553508 GGAGCAGCATCACACAACAAATT 60.554 43.478 0.00 0.00 0.00 1.82
37 38 2.029649 GGAGCAGCATCACACAACAAAT 60.030 45.455 0.00 0.00 0.00 2.32
38 39 1.337703 GGAGCAGCATCACACAACAAA 59.662 47.619 0.00 0.00 0.00 2.83
39 40 0.953727 GGAGCAGCATCACACAACAA 59.046 50.000 0.00 0.00 0.00 2.83
40 41 0.109153 AGGAGCAGCATCACACAACA 59.891 50.000 0.00 0.00 0.00 3.33
41 42 1.242076 AAGGAGCAGCATCACACAAC 58.758 50.000 0.00 0.00 0.00 3.32
42 43 2.857186 TAAGGAGCAGCATCACACAA 57.143 45.000 0.00 0.00 0.00 3.33
43 44 3.011818 CAATAAGGAGCAGCATCACACA 58.988 45.455 0.00 0.00 0.00 3.72
44 45 3.012518 ACAATAAGGAGCAGCATCACAC 58.987 45.455 0.00 0.00 0.00 3.82
45 46 3.354948 ACAATAAGGAGCAGCATCACA 57.645 42.857 0.00 0.00 0.00 3.58
46 47 5.297776 ACATAACAATAAGGAGCAGCATCAC 59.702 40.000 0.00 0.00 0.00 3.06
47 48 5.297527 CACATAACAATAAGGAGCAGCATCA 59.702 40.000 0.00 0.00 0.00 3.07
48 49 5.528690 TCACATAACAATAAGGAGCAGCATC 59.471 40.000 0.00 0.00 0.00 3.91
49 50 5.439721 TCACATAACAATAAGGAGCAGCAT 58.560 37.500 0.00 0.00 0.00 3.79
50 51 4.842574 TCACATAACAATAAGGAGCAGCA 58.157 39.130 0.00 0.00 0.00 4.41
51 52 5.755813 CATCACATAACAATAAGGAGCAGC 58.244 41.667 0.00 0.00 0.00 5.25
52 53 5.297527 TGCATCACATAACAATAAGGAGCAG 59.702 40.000 0.00 0.00 0.00 4.24
53 54 5.192176 TGCATCACATAACAATAAGGAGCA 58.808 37.500 0.00 0.00 0.00 4.26
54 55 5.756195 TGCATCACATAACAATAAGGAGC 57.244 39.130 0.00 0.00 0.00 4.70
80 81 9.557061 CAGCATATATAAGGATCATACAGCAAT 57.443 33.333 0.00 0.00 0.00 3.56
81 82 8.542926 ACAGCATATATAAGGATCATACAGCAA 58.457 33.333 0.00 0.00 0.00 3.91
82 83 8.082672 ACAGCATATATAAGGATCATACAGCA 57.917 34.615 0.00 0.00 0.00 4.41
114 115 9.376075 TGTTTTGTTTTAGCTCAATTCATTTGA 57.624 25.926 0.00 0.00 42.09 2.69
115 116 9.640974 CTGTTTTGTTTTAGCTCAATTCATTTG 57.359 29.630 0.00 0.00 36.61 2.32
116 117 9.598517 TCTGTTTTGTTTTAGCTCAATTCATTT 57.401 25.926 0.00 0.00 0.00 2.32
117 118 9.598517 TTCTGTTTTGTTTTAGCTCAATTCATT 57.401 25.926 0.00 0.00 0.00 2.57
118 119 9.598517 TTTCTGTTTTGTTTTAGCTCAATTCAT 57.401 25.926 0.00 0.00 0.00 2.57
119 120 8.994429 TTTCTGTTTTGTTTTAGCTCAATTCA 57.006 26.923 0.00 0.00 0.00 2.57
154 155 4.819630 TCGGCATAGTTTCTGTCTGTTTTT 59.180 37.500 0.00 0.00 0.00 1.94
155 156 4.213482 GTCGGCATAGTTTCTGTCTGTTTT 59.787 41.667 0.00 0.00 0.00 2.43
156 157 3.746492 GTCGGCATAGTTTCTGTCTGTTT 59.254 43.478 0.00 0.00 0.00 2.83
157 158 3.326747 GTCGGCATAGTTTCTGTCTGTT 58.673 45.455 0.00 0.00 0.00 3.16
158 159 2.671351 CGTCGGCATAGTTTCTGTCTGT 60.671 50.000 0.00 0.00 0.00 3.41
159 160 1.920574 CGTCGGCATAGTTTCTGTCTG 59.079 52.381 0.00 0.00 0.00 3.51
160 161 1.135083 CCGTCGGCATAGTTTCTGTCT 60.135 52.381 0.00 0.00 0.00 3.41
161 162 1.278238 CCGTCGGCATAGTTTCTGTC 58.722 55.000 0.00 0.00 0.00 3.51
162 163 3.436001 CCGTCGGCATAGTTTCTGT 57.564 52.632 0.00 0.00 0.00 3.41
186 187 2.028190 CCAGCTCTATGCCGACGG 59.972 66.667 10.29 10.29 44.23 4.79
187 188 2.659897 GCCAGCTCTATGCCGACG 60.660 66.667 0.00 0.00 44.23 5.12
188 189 2.659897 CGCCAGCTCTATGCCGAC 60.660 66.667 0.00 0.00 44.23 4.79
189 190 3.147595 ACGCCAGCTCTATGCCGA 61.148 61.111 0.00 0.00 44.23 5.54
190 191 2.963854 CACGCCAGCTCTATGCCG 60.964 66.667 0.00 0.00 44.23 5.69
191 192 1.593750 CTCACGCCAGCTCTATGCC 60.594 63.158 0.00 0.00 44.23 4.40
192 193 2.243264 GCTCACGCCAGCTCTATGC 61.243 63.158 0.00 0.00 43.29 3.14
193 194 4.024698 GCTCACGCCAGCTCTATG 57.975 61.111 0.00 0.00 36.38 2.23
200 201 3.699894 ACTGGGAGCTCACGCCAG 61.700 66.667 26.82 26.82 37.52 4.85
201 202 4.007644 CACTGGGAGCTCACGCCA 62.008 66.667 17.19 12.82 37.52 5.69
202 203 4.767255 CCACTGGGAGCTCACGCC 62.767 72.222 17.19 8.36 36.60 5.68
204 205 3.699894 AGCCACTGGGAGCTCACG 61.700 66.667 17.19 11.07 32.71 4.35
205 206 2.046507 CAGCCACTGGGAGCTCAC 60.047 66.667 17.19 13.72 37.18 3.51
206 207 2.203832 TCAGCCACTGGGAGCTCA 60.204 61.111 17.19 0.00 37.18 4.26
207 208 2.267324 GTCAGCCACTGGGAGCTC 59.733 66.667 4.71 4.71 37.18 4.09
208 209 2.527624 TGTCAGCCACTGGGAGCT 60.528 61.111 0.00 0.00 40.89 4.09
209 210 2.359230 GTGTCAGCCACTGGGAGC 60.359 66.667 0.00 0.00 41.11 4.70
210 211 2.047844 CGTGTCAGCCACTGGGAG 60.048 66.667 0.00 0.00 42.20 4.30
211 212 2.842462 ACGTGTCAGCCACTGGGA 60.842 61.111 0.00 0.00 42.20 4.37
212 213 2.666190 CACGTGTCAGCCACTGGG 60.666 66.667 7.58 0.00 42.20 4.45
213 214 2.666190 CCACGTGTCAGCCACTGG 60.666 66.667 15.65 0.00 42.20 4.00
214 215 3.349006 GCCACGTGTCAGCCACTG 61.349 66.667 15.65 0.00 42.20 3.66
215 216 3.814615 CTGCCACGTGTCAGCCACT 62.815 63.158 14.30 0.00 42.20 4.00
216 217 3.349006 CTGCCACGTGTCAGCCAC 61.349 66.667 14.30 0.00 40.89 5.01
217 218 4.624364 CCTGCCACGTGTCAGCCA 62.624 66.667 20.74 5.63 0.00 4.75
218 219 4.626081 ACCTGCCACGTGTCAGCC 62.626 66.667 20.74 1.16 0.00 4.85
219 220 2.154798 TAGACCTGCCACGTGTCAGC 62.155 60.000 20.74 14.20 0.00 4.26
220 221 0.532573 ATAGACCTGCCACGTGTCAG 59.467 55.000 19.33 19.33 0.00 3.51
221 222 0.246360 CATAGACCTGCCACGTGTCA 59.754 55.000 15.65 7.02 0.00 3.58
222 223 1.084370 GCATAGACCTGCCACGTGTC 61.084 60.000 15.65 0.98 36.10 3.67
223 224 1.079127 GCATAGACCTGCCACGTGT 60.079 57.895 15.65 0.00 36.10 4.49
224 225 3.799753 GCATAGACCTGCCACGTG 58.200 61.111 9.08 9.08 36.10 4.49
230 231 2.279517 CCGTCGGCATAGACCTGC 60.280 66.667 0.00 0.00 41.53 4.85
246 247 1.375013 TTTGAACGACGGCTAGGCC 60.375 57.895 11.22 0.00 46.75 5.19
247 248 0.669625 AGTTTGAACGACGGCTAGGC 60.670 55.000 6.15 6.15 0.00 3.93
248 249 2.642139 TAGTTTGAACGACGGCTAGG 57.358 50.000 0.00 0.00 0.00 3.02
249 250 2.344741 GCTTAGTTTGAACGACGGCTAG 59.655 50.000 0.00 0.00 0.00 3.42
250 251 2.331194 GCTTAGTTTGAACGACGGCTA 58.669 47.619 0.00 0.00 0.00 3.93
251 252 1.145803 GCTTAGTTTGAACGACGGCT 58.854 50.000 0.00 0.00 0.00 5.52
252 253 0.165295 GGCTTAGTTTGAACGACGGC 59.835 55.000 0.00 0.00 0.00 5.68
253 254 0.437295 CGGCTTAGTTTGAACGACGG 59.563 55.000 0.00 0.00 0.00 4.79
254 255 1.123756 GTCGGCTTAGTTTGAACGACG 59.876 52.381 0.00 0.00 40.72 5.12
255 256 1.123756 CGTCGGCTTAGTTTGAACGAC 59.876 52.381 0.00 0.00 44.93 4.34
256 257 1.001487 TCGTCGGCTTAGTTTGAACGA 60.001 47.619 0.00 0.00 0.00 3.85
257 258 1.123756 GTCGTCGGCTTAGTTTGAACG 59.876 52.381 0.00 0.00 0.00 3.95
258 259 1.458445 GGTCGTCGGCTTAGTTTGAAC 59.542 52.381 0.00 0.00 0.00 3.18
259 260 1.068895 TGGTCGTCGGCTTAGTTTGAA 59.931 47.619 0.00 0.00 0.00 2.69
260 261 0.675083 TGGTCGTCGGCTTAGTTTGA 59.325 50.000 0.00 0.00 0.00 2.69
261 262 1.068474 CTGGTCGTCGGCTTAGTTTG 58.932 55.000 0.00 0.00 0.00 2.93
262 263 0.037605 CCTGGTCGTCGGCTTAGTTT 60.038 55.000 0.00 0.00 0.00 2.66
263 264 1.590147 CCTGGTCGTCGGCTTAGTT 59.410 57.895 0.00 0.00 0.00 2.24
264 265 3.003113 GCCTGGTCGTCGGCTTAGT 62.003 63.158 0.00 0.00 42.98 2.24
265 266 2.202756 GCCTGGTCGTCGGCTTAG 60.203 66.667 0.00 0.00 42.98 2.18
266 267 3.766691 GGCCTGGTCGTCGGCTTA 61.767 66.667 0.00 0.00 45.57 3.09
299 300 2.612115 AACTGGGCTCTCCTGGGG 60.612 66.667 0.00 0.00 38.62 4.96
300 301 2.673523 CAACTGGGCTCTCCTGGG 59.326 66.667 0.00 0.00 38.62 4.45
301 302 2.045536 GCAACTGGGCTCTCCTGG 60.046 66.667 0.00 0.00 38.62 4.45
302 303 1.376942 CAGCAACTGGGCTCTCCTG 60.377 63.158 0.00 0.00 43.68 3.86
303 304 3.076092 CAGCAACTGGGCTCTCCT 58.924 61.111 0.00 0.00 43.68 3.69
304 305 2.749441 GCAGCAACTGGGCTCTCC 60.749 66.667 0.00 0.00 43.68 3.71
305 306 2.749441 GGCAGCAACTGGGCTCTC 60.749 66.667 0.00 0.00 43.68 3.20
306 307 3.573229 TGGCAGCAACTGGGCTCT 61.573 61.111 0.00 0.00 43.68 4.09
307 308 3.368571 GTGGCAGCAACTGGGCTC 61.369 66.667 0.00 0.00 43.68 4.70
309 310 2.993264 ATGTGGCAGCAACTGGGC 60.993 61.111 0.43 0.00 31.21 5.36
310 311 2.642254 CCATGTGGCAGCAACTGGG 61.642 63.158 0.43 0.00 31.21 4.45
311 312 2.967397 CCATGTGGCAGCAACTGG 59.033 61.111 0.43 2.90 31.21 4.00
321 322 2.198287 GCATAGGCCTGCCATGTGG 61.198 63.158 17.99 0.00 38.92 4.17
322 323 3.440151 GCATAGGCCTGCCATGTG 58.560 61.111 17.99 5.66 38.92 3.21
348 349 6.650989 AGTTTGAAACTATGCCGACGGCTA 62.651 45.833 36.54 24.07 44.52 3.93
349 350 5.979451 AGTTTGAAACTATGCCGACGGCT 62.979 47.826 36.54 24.49 44.52 5.52
350 351 3.757925 AGTTTGAAACTATGCCGACGGC 61.758 50.000 31.85 31.85 44.49 5.68
351 352 2.073816 AGTTTGAAACTATGCCGACGG 58.926 47.619 9.13 10.29 40.69 4.79
352 353 4.882447 CTTAGTTTGAAACTATGCCGACG 58.118 43.478 17.54 0.00 43.09 5.12
358 359 5.730568 GCCATCGGCTTAGTTTGAAACTATG 60.731 44.000 17.54 19.16 46.69 2.23
359 360 4.335594 GCCATCGGCTTAGTTTGAAACTAT 59.664 41.667 17.54 1.11 46.69 2.12
360 361 3.687698 GCCATCGGCTTAGTTTGAAACTA 59.312 43.478 13.39 13.39 46.69 2.24
361 362 2.488153 GCCATCGGCTTAGTTTGAAACT 59.512 45.455 15.57 15.57 46.69 2.66
362 363 2.863739 GCCATCGGCTTAGTTTGAAAC 58.136 47.619 0.00 0.00 46.69 2.78
387 388 2.279517 GCAGTCCTATGCCGACGG 60.280 66.667 10.29 10.29 40.43 4.79
393 394 1.815421 CCACGTGGCAGTCCTATGC 60.815 63.158 24.02 0.00 45.74 3.14
394 395 4.521075 CCACGTGGCAGTCCTATG 57.479 61.111 24.02 0.00 0.00 2.23
404 405 3.490759 CGCTTGCTAGCCACGTGG 61.491 66.667 30.66 30.66 44.86 4.94
405 406 2.317609 AACGCTTGCTAGCCACGTG 61.318 57.895 22.23 9.08 44.86 4.49
406 407 2.030562 AACGCTTGCTAGCCACGT 59.969 55.556 17.72 17.72 44.86 4.49
407 408 2.476051 CAACGCTTGCTAGCCACG 59.524 61.111 13.29 15.30 44.86 4.94
408 409 1.912371 GACCAACGCTTGCTAGCCAC 61.912 60.000 13.29 0.02 44.86 5.01
409 410 1.671054 GACCAACGCTTGCTAGCCA 60.671 57.895 13.29 0.00 44.86 4.75
410 411 1.639298 CTGACCAACGCTTGCTAGCC 61.639 60.000 13.29 0.00 44.86 3.93
411 412 1.790387 CTGACCAACGCTTGCTAGC 59.210 57.895 8.10 8.10 44.21 3.42
412 413 0.950555 TGCTGACCAACGCTTGCTAG 60.951 55.000 0.00 0.00 0.00 3.42
413 414 1.070615 TGCTGACCAACGCTTGCTA 59.929 52.632 0.00 0.00 0.00 3.49
414 415 2.203195 TGCTGACCAACGCTTGCT 60.203 55.556 0.00 0.00 0.00 3.91
415 416 2.050985 GTGCTGACCAACGCTTGC 60.051 61.111 0.00 0.00 0.00 4.01
416 417 0.317269 CAAGTGCTGACCAACGCTTG 60.317 55.000 10.91 10.91 44.95 4.01
417 418 0.463654 TCAAGTGCTGACCAACGCTT 60.464 50.000 0.00 0.00 37.10 4.68
418 419 1.146041 TCAAGTGCTGACCAACGCT 59.854 52.632 0.00 0.00 0.00 5.07
419 420 3.731136 TCAAGTGCTGACCAACGC 58.269 55.556 0.00 0.00 0.00 4.84
437 438 2.814835 ATAAAGTAGGGGGCCGCCG 61.815 63.158 31.36 0.00 0.00 6.46
438 439 1.228154 CATAAAGTAGGGGGCCGCC 60.228 63.158 31.08 31.08 0.00 6.13
439 440 0.534427 GACATAAAGTAGGGGGCCGC 60.534 60.000 13.58 13.58 0.00 6.53
440 441 1.129058 AGACATAAAGTAGGGGGCCG 58.871 55.000 0.00 0.00 0.00 6.13
441 442 3.072622 CCTAAGACATAAAGTAGGGGGCC 59.927 52.174 0.00 0.00 31.20 5.80
455 456 8.259411 TGCGACTAATTAATTAACCCTAAGACA 58.741 33.333 9.15 0.00 0.00 3.41
459 460 9.616156 TTCATGCGACTAATTAATTAACCCTAA 57.384 29.630 9.15 0.00 0.00 2.69
476 477 3.545633 GTCAACTTCAGTTTCATGCGAC 58.454 45.455 0.00 0.00 35.83 5.19
479 480 2.290641 ACCGTCAACTTCAGTTTCATGC 59.709 45.455 0.00 0.00 35.83 4.06
484 485 4.761975 TGTTAGACCGTCAACTTCAGTTT 58.238 39.130 0.40 0.00 35.83 2.66
545 546 3.678806 GCCAACATATCCGAGTGTGAAGA 60.679 47.826 0.00 0.00 0.00 2.87
728 729 6.991938 AGCTGCACTTTGTAAATTATCCAAA 58.008 32.000 1.02 0.00 0.00 3.28
815 818 3.449632 GGAGCGGTTTCAGACTTCTATC 58.550 50.000 0.00 0.00 0.00 2.08
837 840 4.922103 GTCTTTAGTCTTTACCCTGACGTG 59.078 45.833 0.00 0.00 38.16 4.49
881 884 5.284079 GCTTCACAACTGTCATTTGTCAAT 58.716 37.500 5.64 0.00 34.91 2.57
939 946 6.346999 CGCGCTTTTTGGTTTATTTTGGTTAT 60.347 34.615 5.56 0.00 0.00 1.89
964 971 9.733219 GAGTACAAGATTACAGATTAGGTGTAC 57.267 37.037 0.00 0.00 39.23 2.90
1055 1062 2.701780 CCCTCTCTCGTGTGACCCG 61.702 68.421 0.00 0.00 0.00 5.28
1058 1065 2.875933 CTCTATCCCTCTCTCGTGTGAC 59.124 54.545 0.00 0.00 0.00 3.67
1072 1135 4.319177 GCTCTCTCACTCTCTCTCTATCC 58.681 52.174 0.00 0.00 0.00 2.59
1075 1138 3.028130 TCGCTCTCTCACTCTCTCTCTA 58.972 50.000 0.00 0.00 0.00 2.43
1086 1149 1.468985 CTCCTCCTTTCGCTCTCTCA 58.531 55.000 0.00 0.00 0.00 3.27
1094 1157 0.033011 TCCTCCTCCTCCTCCTTTCG 60.033 60.000 0.00 0.00 0.00 3.46
1111 1181 4.436998 CCCTGCTCGTGGTCGTCC 62.437 72.222 0.00 0.00 38.33 4.79
1118 1190 3.465403 CTCCTCCCCCTGCTCGTG 61.465 72.222 0.00 0.00 0.00 4.35
1120 1192 3.984186 TTCCTCCTCCCCCTGCTCG 62.984 68.421 0.00 0.00 0.00 5.03
1128 1200 1.631071 CCTTGCTCCTTCCTCCTCCC 61.631 65.000 0.00 0.00 0.00 4.30
1207 1279 2.906897 CTGTTGCTGCCACCGGTT 60.907 61.111 2.97 0.00 0.00 4.44
1333 1413 4.072131 ACACTGTCGAATTAAACATGGCT 58.928 39.130 0.00 0.00 0.00 4.75
1580 1724 4.813161 CGGAAGATCACTGTTATCTTGCAT 59.187 41.667 25.60 5.62 46.36 3.96
1581 1725 4.183865 CGGAAGATCACTGTTATCTTGCA 58.816 43.478 25.60 0.00 46.36 4.08
1582 1726 3.001736 GCGGAAGATCACTGTTATCTTGC 59.998 47.826 19.00 19.53 42.38 4.01
1583 1727 4.183865 TGCGGAAGATCACTGTTATCTTG 58.816 43.478 19.00 9.05 42.38 3.02
1584 1728 4.160439 TCTGCGGAAGATCACTGTTATCTT 59.840 41.667 15.15 15.15 44.43 2.40
1585 1729 3.701542 TCTGCGGAAGATCACTGTTATCT 59.298 43.478 0.00 0.00 35.17 1.98
1586 1730 4.046938 TCTGCGGAAGATCACTGTTATC 57.953 45.455 0.00 0.00 0.00 1.75
1587 1731 3.181471 CCTCTGCGGAAGATCACTGTTAT 60.181 47.826 0.00 0.00 33.29 1.89
1588 1732 2.166459 CCTCTGCGGAAGATCACTGTTA 59.834 50.000 0.00 0.00 33.29 2.41
1589 1733 1.066573 CCTCTGCGGAAGATCACTGTT 60.067 52.381 0.00 0.00 33.29 3.16
1590 1734 0.534412 CCTCTGCGGAAGATCACTGT 59.466 55.000 0.00 0.00 33.29 3.55
1591 1735 0.179089 CCCTCTGCGGAAGATCACTG 60.179 60.000 0.00 0.00 33.29 3.66
1592 1736 0.616111 ACCCTCTGCGGAAGATCACT 60.616 55.000 0.00 0.00 33.29 3.41
1593 1737 0.250513 AACCCTCTGCGGAAGATCAC 59.749 55.000 0.00 0.00 33.29 3.06
1594 1738 0.537188 GAACCCTCTGCGGAAGATCA 59.463 55.000 0.00 0.00 33.29 2.92
1595 1739 0.827368 AGAACCCTCTGCGGAAGATC 59.173 55.000 0.00 0.00 33.29 2.75
1596 1740 0.827368 GAGAACCCTCTGCGGAAGAT 59.173 55.000 0.00 0.00 36.50 2.40
1597 1741 1.595993 CGAGAACCCTCTGCGGAAGA 61.596 60.000 0.00 0.00 37.28 2.87
1598 1742 1.153745 CGAGAACCCTCTGCGGAAG 60.154 63.158 0.00 0.00 37.28 3.46
1599 1743 0.609957 TACGAGAACCCTCTGCGGAA 60.610 55.000 0.00 0.00 37.28 4.30
1600 1744 1.001764 TACGAGAACCCTCTGCGGA 60.002 57.895 0.00 0.00 37.28 5.54
1601 1745 1.139095 GTACGAGAACCCTCTGCGG 59.861 63.158 0.00 0.00 37.28 5.69
1602 1746 1.139095 GGTACGAGAACCCTCTGCG 59.861 63.158 0.00 0.00 37.28 5.18
1623 1767 7.589395 TGCGTATCTTGCATTAAAGAGAAAAA 58.411 30.769 0.00 0.00 39.47 1.94
1624 1768 7.139896 TGCGTATCTTGCATTAAAGAGAAAA 57.860 32.000 0.00 0.00 39.47 2.29
1625 1769 6.735678 TGCGTATCTTGCATTAAAGAGAAA 57.264 33.333 0.00 0.00 39.47 2.52
1672 1816 8.793592 GGTGTTTTTAAGATCACTGGTATCTTT 58.206 33.333 10.68 0.00 40.03 2.52
1673 1817 7.942341 TGGTGTTTTTAAGATCACTGGTATCTT 59.058 33.333 10.37 10.37 44.07 2.40
1674 1818 7.390718 GTGGTGTTTTTAAGATCACTGGTATCT 59.609 37.037 7.04 0.00 35.17 1.98
1675 1819 7.174253 TGTGGTGTTTTTAAGATCACTGGTATC 59.826 37.037 7.04 0.00 0.00 2.24
1676 1820 7.001674 TGTGGTGTTTTTAAGATCACTGGTAT 58.998 34.615 7.04 0.00 0.00 2.73
1677 1821 6.358178 TGTGGTGTTTTTAAGATCACTGGTA 58.642 36.000 7.04 0.00 0.00 3.25
1678 1822 5.197451 TGTGGTGTTTTTAAGATCACTGGT 58.803 37.500 7.04 0.00 0.00 4.00
1679 1823 5.766150 TGTGGTGTTTTTAAGATCACTGG 57.234 39.130 7.04 0.00 0.00 4.00
1728 1872 1.369091 CTCCTCCCACAAAATCGGCG 61.369 60.000 0.00 0.00 0.00 6.46
1731 1875 2.159627 CGTTTCTCCTCCCACAAAATCG 59.840 50.000 0.00 0.00 0.00 3.34
1732 1876 2.488153 CCGTTTCTCCTCCCACAAAATC 59.512 50.000 0.00 0.00 0.00 2.17
1733 1877 2.107552 TCCGTTTCTCCTCCCACAAAAT 59.892 45.455 0.00 0.00 0.00 1.82
1736 1880 1.358152 ATCCGTTTCTCCTCCCACAA 58.642 50.000 0.00 0.00 0.00 3.33
1738 1882 2.488153 CAAAATCCGTTTCTCCTCCCAC 59.512 50.000 0.00 0.00 0.00 4.61
1740 1884 2.488153 CACAAAATCCGTTTCTCCTCCC 59.512 50.000 0.00 0.00 0.00 4.30
1741 1885 2.488153 CCACAAAATCCGTTTCTCCTCC 59.512 50.000 0.00 0.00 0.00 4.30
1743 1887 1.886542 GCCACAAAATCCGTTTCTCCT 59.113 47.619 0.00 0.00 0.00 3.69
1744 1888 1.611491 TGCCACAAAATCCGTTTCTCC 59.389 47.619 0.00 0.00 0.00 3.71
1745 1889 2.351738 CCTGCCACAAAATCCGTTTCTC 60.352 50.000 0.00 0.00 0.00 2.87
1746 1890 1.613437 CCTGCCACAAAATCCGTTTCT 59.387 47.619 0.00 0.00 0.00 2.52
1747 1891 1.611491 TCCTGCCACAAAATCCGTTTC 59.389 47.619 0.00 0.00 0.00 2.78
1748 1892 1.613437 CTCCTGCCACAAAATCCGTTT 59.387 47.619 0.00 0.00 0.00 3.60
1749 1893 1.202879 TCTCCTGCCACAAAATCCGTT 60.203 47.619 0.00 0.00 0.00 4.44
1750 1894 0.400213 TCTCCTGCCACAAAATCCGT 59.600 50.000 0.00 0.00 0.00 4.69
1751 1895 1.533625 TTCTCCTGCCACAAAATCCG 58.466 50.000 0.00 0.00 0.00 4.18
1752 1896 2.351738 CGTTTCTCCTGCCACAAAATCC 60.352 50.000 0.00 0.00 0.00 3.01
1763 1907 0.032952 TCGTCCAACCGTTTCTCCTG 59.967 55.000 0.00 0.00 0.00 3.86
1791 1935 5.121454 CGTCATTCTTTCTTCTTTCTCCAGG 59.879 44.000 0.00 0.00 0.00 4.45
1811 1955 1.207089 CTAAGATCCAACAGCCCGTCA 59.793 52.381 0.00 0.00 0.00 4.35
1972 2537 4.021007 TCTCCTATTTCCCCCTTCATGA 57.979 45.455 0.00 0.00 0.00 3.07
2212 2788 4.715534 TCACCCCAAGAATACAAGAACA 57.284 40.909 0.00 0.00 0.00 3.18
2377 2977 0.035739 TGTTCCTTCCTGCGGGTTAC 59.964 55.000 12.43 4.59 0.00 2.50
2445 3046 5.350640 CGCCCTTAAAACTAGATCGTCTTTT 59.649 40.000 0.00 0.00 0.00 2.27
2714 3319 2.094906 GGGGAAAGATGGCGTTGTTAAC 60.095 50.000 0.00 0.00 0.00 2.01
2724 3330 2.947695 GCCTGAAAGAGGGGAAAGATGG 60.948 54.545 0.00 0.00 43.07 3.51
2811 3418 5.820131 TGACAAAATTATAGATGGCAAGCG 58.180 37.500 0.00 0.00 0.00 4.68
2884 3492 7.764443 ACTGCAGTACATAAATCATTAACGAGT 59.236 33.333 20.16 0.00 0.00 4.18
2906 3514 4.972440 GTGTCTGAAGAAAACATGAACTGC 59.028 41.667 0.00 0.00 0.00 4.40
2907 3515 5.200454 CGTGTCTGAAGAAAACATGAACTG 58.800 41.667 0.00 0.00 32.81 3.16
2920 3528 6.807230 AGTACATAAAAGCTACGTGTCTGAAG 59.193 38.462 0.00 0.00 0.00 3.02
3064 3672 5.960202 GGGATGGGGAATTGCAATATCTATT 59.040 40.000 13.39 0.00 0.00 1.73
3157 3765 4.282292 AGGGTTTCTATAGTAGTGCCCT 57.718 45.455 13.39 13.39 37.48 5.19
3216 3824 7.262048 TGCTTGTGATTATTGTATCTACGACA 58.738 34.615 0.00 0.00 0.00 4.35
3220 3828 9.098355 TGAGTTGCTTGTGATTATTGTATCTAC 57.902 33.333 0.00 0.00 0.00 2.59
3398 4006 6.546972 GGCTAGTCTACAAATCAAATAGCC 57.453 41.667 4.25 4.25 45.05 3.93
3425 4033 7.336931 ACAATATAGTGGTGAATTGAAGTGGAC 59.663 37.037 5.03 0.00 34.26 4.02
3455 4063 1.134560 GTTATCGACCGACAAGCCTCT 59.865 52.381 0.00 0.00 0.00 3.69
3475 4083 6.095160 GGGTATATACCTCTGATAGTCCAACG 59.905 46.154 27.24 0.00 45.72 4.10
3545 4153 1.003355 CGACATGTGGGCTCAAGGT 60.003 57.895 1.15 0.00 0.00 3.50
3549 4157 1.604147 ATCGTCGACATGTGGGCTCA 61.604 55.000 17.16 0.00 0.00 4.26
3602 4210 2.158798 GCACCACCCTACTTCTATTCCC 60.159 54.545 0.00 0.00 0.00 3.97
3637 4245 3.117625 ACCATGTCAGCCTCATCATCAAT 60.118 43.478 0.00 0.00 0.00 2.57
3650 4258 3.808728 ACCGGATAAATCACCATGTCAG 58.191 45.455 9.46 0.00 0.00 3.51
3706 4318 3.900892 CCAGGCGAGCGTATCCGT 61.901 66.667 0.00 0.00 36.15 4.69
3741 4353 2.732016 CCCTCAACACGTGTCCGA 59.268 61.111 23.61 19.66 37.88 4.55
3742 4354 2.357034 CCCCTCAACACGTGTCCG 60.357 66.667 23.61 16.34 40.83 4.79
3749 4361 2.115266 CCCACACCCCCTCAACAC 59.885 66.667 0.00 0.00 0.00 3.32
3768 4380 0.179702 GCAGAGGAGATGCATGTGGA 59.820 55.000 2.46 0.00 43.31 4.02
3806 4418 9.975218 AGAGAAATGTTTTGGGTGTATATAAGT 57.025 29.630 0.00 0.00 0.00 2.24
3868 4485 6.455647 CATTGAACTGGATAGCCTCGTAATA 58.544 40.000 0.00 0.00 34.31 0.98
3885 4502 2.419851 CCCCTCTGAGAGAGCATTGAAC 60.420 54.545 11.82 0.00 40.98 3.18
3907 4524 5.525012 TGAAGGTGATGACGATGATGATTTC 59.475 40.000 0.00 0.00 0.00 2.17
3926 4546 2.611292 GGAGCAACAATCTCGATGAAGG 59.389 50.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.