Multiple sequence alignment - TraesCS4D01G306700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G306700 chr4D 100.000 2312 0 0 1 2312 474917675 474919986 0.000000e+00 4270
1 TraesCS4D01G306700 chr4D 87.097 310 37 3 1001 1307 504508389 504508080 4.730000e-92 348
2 TraesCS4D01G306700 chr4D 80.000 170 28 4 3 166 390608686 390608517 1.120000e-23 121
3 TraesCS4D01G306700 chr4B 92.199 782 41 12 624 1401 599357345 599356580 0.000000e+00 1088
4 TraesCS4D01G306700 chr4B 84.375 160 20 3 1 155 507231830 507231671 3.980000e-33 152
5 TraesCS4D01G306700 chr4B 87.500 96 12 0 2213 2308 599352234 599352139 6.750000e-21 111
6 TraesCS4D01G306700 chr4A 80.546 1429 146 61 114 1503 681179816 681178481 0.000000e+00 977
7 TraesCS4D01G306700 chr3A 88.845 511 54 3 1693 2201 584028118 584028627 1.950000e-175 625
8 TraesCS4D01G306700 chr6D 88.417 518 55 5 1696 2209 400091870 400092386 9.070000e-174 619
9 TraesCS4D01G306700 chr6D 87.140 521 62 5 1693 2209 451958217 451957698 9.200000e-164 586
10 TraesCS4D01G306700 chr6D 86.717 527 66 4 1683 2207 243626185 243625661 1.190000e-162 582
11 TraesCS4D01G306700 chrUn 88.212 509 53 7 1689 2194 92406898 92407402 3.290000e-168 601
12 TraesCS4D01G306700 chrUn 87.767 515 56 7 1689 2200 380756672 380756162 1.530000e-166 595
13 TraesCS4D01G306700 chr7D 88.086 512 49 11 1689 2194 207314216 207314721 4.250000e-167 597
14 TraesCS4D01G306700 chr7D 87.743 514 51 9 1693 2203 91748923 91748419 7.110000e-165 590
15 TraesCS4D01G306700 chr7D 79.812 213 35 8 23 229 542977585 542977375 5.150000e-32 148
16 TraesCS4D01G306700 chr7A 86.817 531 59 7 1681 2208 97579915 97580437 1.190000e-162 582
17 TraesCS4D01G306700 chr2B 88.462 312 30 3 1000 1311 100030180 100029875 2.810000e-99 372
18 TraesCS4D01G306700 chr2B 88.179 313 29 5 1000 1311 100024748 100025053 1.310000e-97 366
19 TraesCS4D01G306700 chr2B 76.162 495 95 9 22 509 772150986 772150508 2.970000e-59 239
20 TraesCS4D01G306700 chr2D 88.387 310 28 5 1003 1311 64015186 64014884 1.310000e-97 366
21 TraesCS4D01G306700 chr2D 87.461 319 34 3 1000 1318 63908620 63908932 1.690000e-96 363
22 TraesCS4D01G306700 chr2D 87.821 312 32 3 1000 1311 64010987 64011292 6.070000e-96 361
23 TraesCS4D01G306700 chr2D 76.324 321 59 11 8 320 24224801 24225112 3.080000e-34 156
24 TraesCS4D01G306700 chr2A 88.141 312 31 3 1000 1311 65475993 65475688 1.310000e-97 366
25 TraesCS4D01G306700 chr5A 80.564 319 48 6 1 311 280981097 280980785 1.380000e-57 233
26 TraesCS4D01G306700 chr5D 82.917 240 35 2 1 234 214710837 214710598 6.470000e-51 211
27 TraesCS4D01G306700 chr1D 79.554 269 43 10 14 276 371093643 371093905 5.070000e-42 182
28 TraesCS4D01G306700 chr1D 80.769 156 22 4 2 152 336349118 336349270 5.220000e-22 115
29 TraesCS4D01G306700 chr1A 79.769 173 24 8 12 181 516696890 516697054 5.220000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G306700 chr4D 474917675 474919986 2311 False 4270 4270 100.000 1 2312 1 chr4D.!!$F1 2311
1 TraesCS4D01G306700 chr4B 599356580 599357345 765 True 1088 1088 92.199 624 1401 1 chr4B.!!$R3 777
2 TraesCS4D01G306700 chr4A 681178481 681179816 1335 True 977 977 80.546 114 1503 1 chr4A.!!$R1 1389
3 TraesCS4D01G306700 chr3A 584028118 584028627 509 False 625 625 88.845 1693 2201 1 chr3A.!!$F1 508
4 TraesCS4D01G306700 chr6D 400091870 400092386 516 False 619 619 88.417 1696 2209 1 chr6D.!!$F1 513
5 TraesCS4D01G306700 chr6D 451957698 451958217 519 True 586 586 87.140 1693 2209 1 chr6D.!!$R2 516
6 TraesCS4D01G306700 chr6D 243625661 243626185 524 True 582 582 86.717 1683 2207 1 chr6D.!!$R1 524
7 TraesCS4D01G306700 chrUn 92406898 92407402 504 False 601 601 88.212 1689 2194 1 chrUn.!!$F1 505
8 TraesCS4D01G306700 chrUn 380756162 380756672 510 True 595 595 87.767 1689 2200 1 chrUn.!!$R1 511
9 TraesCS4D01G306700 chr7D 207314216 207314721 505 False 597 597 88.086 1689 2194 1 chr7D.!!$F1 505
10 TraesCS4D01G306700 chr7D 91748419 91748923 504 True 590 590 87.743 1693 2203 1 chr7D.!!$R1 510
11 TraesCS4D01G306700 chr7A 97579915 97580437 522 False 582 582 86.817 1681 2208 1 chr7A.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 385 0.026285 CCCAATCGTCGCGATGTTTC 59.974 55.0 26.4 5.89 46.3 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2376 0.035317 AGCGCTTCATCACCACTTCA 59.965 50.0 2.64 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.749044 CTGCCAGCCGACTGCAAT 60.749 61.111 0.00 0.00 43.02 3.56
40 41 3.047718 CTGCCAGCCGACTGCAATG 62.048 63.158 0.00 0.00 43.02 2.82
41 42 3.818787 GCCAGCCGACTGCAATGG 61.819 66.667 0.00 0.00 43.02 3.16
50 51 2.898840 CTGCAATGGCGGCGATCT 60.899 61.111 12.98 0.00 45.35 2.75
51 52 2.890109 CTGCAATGGCGGCGATCTC 61.890 63.158 12.98 0.00 45.35 2.75
52 53 3.654020 GCAATGGCGGCGATCTCC 61.654 66.667 12.98 1.84 0.00 3.71
53 54 2.109799 CAATGGCGGCGATCTCCT 59.890 61.111 12.98 0.00 0.00 3.69
54 55 1.524621 CAATGGCGGCGATCTCCTT 60.525 57.895 12.98 0.00 0.00 3.36
55 56 1.097547 CAATGGCGGCGATCTCCTTT 61.098 55.000 12.98 3.66 0.00 3.11
56 57 0.394352 AATGGCGGCGATCTCCTTTT 60.394 50.000 12.98 0.00 0.00 2.27
57 58 0.394352 ATGGCGGCGATCTCCTTTTT 60.394 50.000 12.98 0.00 0.00 1.94
58 59 1.024579 TGGCGGCGATCTCCTTTTTC 61.025 55.000 12.98 0.00 0.00 2.29
59 60 0.744771 GGCGGCGATCTCCTTTTTCT 60.745 55.000 12.98 0.00 0.00 2.52
60 61 0.375106 GCGGCGATCTCCTTTTTCTG 59.625 55.000 12.98 0.00 0.00 3.02
61 62 0.375106 CGGCGATCTCCTTTTTCTGC 59.625 55.000 0.00 0.00 0.00 4.26
62 63 1.743996 GGCGATCTCCTTTTTCTGCT 58.256 50.000 0.00 0.00 0.00 4.24
63 64 1.668237 GGCGATCTCCTTTTTCTGCTC 59.332 52.381 0.00 0.00 0.00 4.26
64 65 1.325943 GCGATCTCCTTTTTCTGCTCG 59.674 52.381 0.00 0.00 0.00 5.03
65 66 1.929836 CGATCTCCTTTTTCTGCTCGG 59.070 52.381 0.00 0.00 0.00 4.63
66 67 2.417379 CGATCTCCTTTTTCTGCTCGGA 60.417 50.000 0.00 0.00 0.00 4.55
67 68 3.739519 CGATCTCCTTTTTCTGCTCGGAT 60.740 47.826 0.00 0.00 0.00 4.18
68 69 2.977914 TCTCCTTTTTCTGCTCGGATG 58.022 47.619 0.00 0.00 0.00 3.51
69 70 2.567169 TCTCCTTTTTCTGCTCGGATGA 59.433 45.455 0.00 0.00 0.00 2.92
70 71 3.198635 TCTCCTTTTTCTGCTCGGATGAT 59.801 43.478 0.00 0.00 0.00 2.45
71 72 4.405680 TCTCCTTTTTCTGCTCGGATGATA 59.594 41.667 0.00 0.00 0.00 2.15
72 73 5.070981 TCTCCTTTTTCTGCTCGGATGATAT 59.929 40.000 0.00 0.00 0.00 1.63
73 74 5.059161 TCCTTTTTCTGCTCGGATGATATG 58.941 41.667 0.00 0.00 0.00 1.78
74 75 4.320057 CCTTTTTCTGCTCGGATGATATGC 60.320 45.833 0.00 0.00 0.00 3.14
75 76 3.758755 TTTCTGCTCGGATGATATGCT 57.241 42.857 0.00 0.00 0.00 3.79
76 77 2.738013 TCTGCTCGGATGATATGCTG 57.262 50.000 0.00 0.00 0.00 4.41
77 78 1.966354 TCTGCTCGGATGATATGCTGT 59.034 47.619 0.00 0.00 0.00 4.40
78 79 2.029560 TCTGCTCGGATGATATGCTGTC 60.030 50.000 0.00 0.00 0.00 3.51
79 80 1.001293 TGCTCGGATGATATGCTGTCC 59.999 52.381 0.00 0.00 0.00 4.02
80 81 1.674221 GCTCGGATGATATGCTGTCCC 60.674 57.143 0.00 0.00 0.00 4.46
81 82 1.620323 CTCGGATGATATGCTGTCCCA 59.380 52.381 0.00 0.00 0.00 4.37
82 83 2.037641 CTCGGATGATATGCTGTCCCAA 59.962 50.000 0.00 0.00 0.00 4.12
83 84 2.437651 TCGGATGATATGCTGTCCCAAA 59.562 45.455 0.00 0.00 0.00 3.28
84 85 2.549754 CGGATGATATGCTGTCCCAAAC 59.450 50.000 0.00 0.00 0.00 2.93
85 86 2.549754 GGATGATATGCTGTCCCAAACG 59.450 50.000 0.00 0.00 0.00 3.60
86 87 2.036958 TGATATGCTGTCCCAAACGG 57.963 50.000 0.00 0.00 37.31 4.44
103 104 4.511636 GCTTTGGAGCTCGAGGAG 57.488 61.111 15.58 7.19 45.65 3.69
104 105 1.153469 GCTTTGGAGCTCGAGGAGG 60.153 63.158 15.58 0.00 45.65 4.30
105 106 1.153469 CTTTGGAGCTCGAGGAGGC 60.153 63.158 15.58 0.00 0.00 4.70
106 107 2.585791 CTTTGGAGCTCGAGGAGGCC 62.586 65.000 15.58 0.00 0.00 5.19
107 108 3.905153 TTGGAGCTCGAGGAGGCCA 62.905 63.158 15.58 0.00 0.00 5.36
108 109 2.841988 GGAGCTCGAGGAGGCCAT 60.842 66.667 15.58 0.00 0.00 4.40
109 110 2.420890 GAGCTCGAGGAGGCCATG 59.579 66.667 15.58 0.00 0.00 3.66
110 111 3.160047 AGCTCGAGGAGGCCATGG 61.160 66.667 15.58 7.63 0.00 3.66
111 112 3.474570 GCTCGAGGAGGCCATGGT 61.475 66.667 15.58 0.00 0.00 3.55
112 113 2.134287 GCTCGAGGAGGCCATGGTA 61.134 63.158 15.58 0.00 0.00 3.25
117 118 0.886490 GAGGAGGCCATGGTATTGCG 60.886 60.000 14.67 0.00 0.00 4.85
123 124 0.106708 GCCATGGTATTGCGGAGAGA 59.893 55.000 14.67 0.00 0.00 3.10
134 135 1.681486 GCGGAGAGAAGGAAGGGAGG 61.681 65.000 0.00 0.00 0.00 4.30
142 143 0.327964 AAGGAAGGGAGGGGAGGATG 60.328 60.000 0.00 0.00 0.00 3.51
159 160 0.694771 ATGATGGATGCGGCTATGGT 59.305 50.000 0.00 0.00 0.00 3.55
174 175 0.977108 ATGGTCGGGCCTACGGTTTA 60.977 55.000 0.84 0.00 38.35 2.01
181 182 2.733227 CGGGCCTACGGTTTATATAGCG 60.733 54.545 12.30 12.30 44.05 4.26
184 185 2.493278 GCCTACGGTTTATATAGCGGGA 59.507 50.000 17.03 5.82 42.86 5.14
190 191 4.181578 CGGTTTATATAGCGGGAAGATGG 58.818 47.826 6.85 0.00 35.53 3.51
191 192 4.514401 GGTTTATATAGCGGGAAGATGGG 58.486 47.826 0.00 0.00 0.00 4.00
222 223 1.003223 GTGACGTAATTAATGGCGGGC 60.003 52.381 13.89 0.00 0.00 6.13
225 226 1.284715 GTAATTAATGGCGGGCGGC 59.715 57.895 8.74 8.74 42.51 6.53
241 242 3.768633 GGCAGACAGACGGATGAAT 57.231 52.632 0.00 0.00 0.00 2.57
249 250 1.077787 GACGGATGAATGGGTGGCA 60.078 57.895 0.00 0.00 0.00 4.92
250 251 1.376609 GACGGATGAATGGGTGGCAC 61.377 60.000 9.70 9.70 0.00 5.01
256 257 4.299796 AATGGGTGGCACCGGCTT 62.300 61.111 29.18 18.82 39.83 4.35
278 279 2.813474 TTCCTCGGCAATCGCACG 60.813 61.111 0.00 0.00 41.24 5.34
292 293 4.811555 ATCGCACGCATGTTAAATGTAT 57.188 36.364 0.00 0.00 0.00 2.29
298 299 3.694072 ACGCATGTTAAATGTATGCAGGT 59.306 39.130 8.84 0.00 45.58 4.00
299 300 4.037021 CGCATGTTAAATGTATGCAGGTG 58.963 43.478 8.84 0.00 45.58 4.00
300 301 4.362279 GCATGTTAAATGTATGCAGGTGG 58.638 43.478 0.00 0.00 44.88 4.61
307 308 1.518572 GTATGCAGGTGGACGGACG 60.519 63.158 0.00 0.00 0.00 4.79
312 313 3.308705 AGGTGGACGGACGGGTTC 61.309 66.667 0.00 0.00 0.00 3.62
314 315 2.260743 GTGGACGGACGGGTTCTC 59.739 66.667 0.00 0.00 0.00 2.87
323 324 1.574134 GACGGGTTCTCGTTTGAACA 58.426 50.000 15.90 0.00 45.74 3.18
324 325 2.140717 GACGGGTTCTCGTTTGAACAT 58.859 47.619 15.90 5.59 45.74 2.71
325 326 1.871039 ACGGGTTCTCGTTTGAACATG 59.129 47.619 15.90 0.00 45.74 3.21
331 332 0.958091 CTCGTTTGAACATGGGGCAA 59.042 50.000 0.00 0.00 0.00 4.52
333 334 0.673437 CGTTTGAACATGGGGCAACT 59.327 50.000 0.00 0.00 0.00 3.16
334 335 1.602668 CGTTTGAACATGGGGCAACTG 60.603 52.381 0.00 0.00 0.00 3.16
345 346 2.644418 GCAACTGCATGCACCGAA 59.356 55.556 18.46 0.00 45.70 4.30
348 349 1.850377 CAACTGCATGCACCGAAAAA 58.150 45.000 18.46 0.00 0.00 1.94
349 350 1.522258 CAACTGCATGCACCGAAAAAC 59.478 47.619 18.46 0.00 0.00 2.43
351 352 0.040514 CTGCATGCACCGAAAAACGA 60.041 50.000 18.46 0.00 45.77 3.85
360 361 3.704609 GAAAAACGACGCGGGCGA 61.705 61.111 26.22 0.00 42.83 5.54
361 362 3.018840 GAAAAACGACGCGGGCGAT 62.019 57.895 26.22 14.48 42.83 4.58
371 372 2.974698 CGGGCGATGCTCCCAATC 60.975 66.667 0.00 0.00 44.11 2.67
372 373 2.974698 GGGCGATGCTCCCAATCG 60.975 66.667 1.60 1.60 43.37 3.34
373 374 2.203070 GGCGATGCTCCCAATCGT 60.203 61.111 7.54 0.00 39.71 3.73
374 375 2.247437 GGCGATGCTCCCAATCGTC 61.247 63.158 7.54 1.36 39.71 4.20
375 376 2.589492 GCGATGCTCCCAATCGTCG 61.589 63.158 7.54 0.00 42.66 5.12
376 377 2.589492 CGATGCTCCCAATCGTCGC 61.589 63.158 0.00 0.00 35.38 5.19
377 378 2.586079 ATGCTCCCAATCGTCGCG 60.586 61.111 0.00 0.00 0.00 5.87
378 379 2.954020 GATGCTCCCAATCGTCGCGA 62.954 60.000 3.71 3.71 41.13 5.87
380 381 2.589492 GCTCCCAATCGTCGCGATG 61.589 63.158 22.29 22.29 46.30 3.84
381 382 1.226974 CTCCCAATCGTCGCGATGT 60.227 57.895 26.40 12.26 46.30 3.06
382 383 0.806102 CTCCCAATCGTCGCGATGTT 60.806 55.000 26.40 16.69 46.30 2.71
383 384 0.390603 TCCCAATCGTCGCGATGTTT 60.391 50.000 26.40 21.41 46.30 2.83
384 385 0.026285 CCCAATCGTCGCGATGTTTC 59.974 55.000 26.40 5.89 46.30 2.78
385 386 0.718904 CCAATCGTCGCGATGTTTCA 59.281 50.000 26.40 9.03 46.30 2.69
397 398 0.171903 ATGTTTCAATGCCTGAGCGC 59.828 50.000 0.00 0.00 44.31 5.92
399 400 0.242017 GTTTCAATGCCTGAGCGCTT 59.758 50.000 13.26 0.00 44.31 4.68
405 406 0.743701 ATGCCTGAGCGCTTTGAGAG 60.744 55.000 13.26 2.79 44.31 3.20
409 410 1.075425 CTGAGCGCTTTGAGAGGTCG 61.075 60.000 13.26 0.00 43.84 4.79
410 411 2.433318 AGCGCTTTGAGAGGTCGC 60.433 61.111 2.64 0.00 45.34 5.19
417 418 2.797866 TTTGAGAGGTCGCGTCGCTC 62.798 60.000 16.36 21.02 0.00 5.03
429 430 3.774528 TCGCTCTGAGCCGCCATT 61.775 61.111 22.97 0.00 38.18 3.16
433 434 1.605457 CGCTCTGAGCCGCCATTAATA 60.605 52.381 22.97 0.00 38.18 0.98
456 457 1.531840 ACTCGTGCTCCAGAGTGGT 60.532 57.895 0.00 0.00 45.03 4.16
457 458 1.080230 CTCGTGCTCCAGAGTGGTG 60.080 63.158 0.00 0.00 39.03 4.17
471 472 0.312102 GTGGTGCTGCTGACCTTTTC 59.688 55.000 10.12 0.00 34.26 2.29
472 473 0.823356 TGGTGCTGCTGACCTTTTCC 60.823 55.000 10.12 0.00 34.26 3.13
473 474 1.576421 GTGCTGCTGACCTTTTCCG 59.424 57.895 0.00 0.00 0.00 4.30
475 476 0.884704 TGCTGCTGACCTTTTCCGAC 60.885 55.000 0.00 0.00 0.00 4.79
476 477 1.901650 GCTGCTGACCTTTTCCGACG 61.902 60.000 0.00 0.00 0.00 5.12
477 478 1.291877 CTGCTGACCTTTTCCGACGG 61.292 60.000 7.84 7.84 0.00 4.79
478 479 2.033194 GCTGACCTTTTCCGACGGG 61.033 63.158 15.25 0.00 0.00 5.28
479 480 1.669440 CTGACCTTTTCCGACGGGA 59.331 57.895 15.25 0.77 41.83 5.14
504 505 2.926420 GCGGGCGTGGGTGATTTTT 61.926 57.895 0.00 0.00 0.00 1.94
528 533 7.589958 TTTTTAATTAGTCAGGGCAGTCAAA 57.410 32.000 0.00 0.00 0.00 2.69
529 534 7.589958 TTTTAATTAGTCAGGGCAGTCAAAA 57.410 32.000 0.00 0.00 0.00 2.44
530 535 7.589958 TTTAATTAGTCAGGGCAGTCAAAAA 57.410 32.000 0.00 0.00 0.00 1.94
531 536 7.775053 TTAATTAGTCAGGGCAGTCAAAAAT 57.225 32.000 0.00 0.00 0.00 1.82
532 537 5.649782 ATTAGTCAGGGCAGTCAAAAATG 57.350 39.130 0.00 0.00 0.00 2.32
533 538 3.228188 AGTCAGGGCAGTCAAAAATGA 57.772 42.857 0.00 0.00 0.00 2.57
539 544 2.034053 GGGCAGTCAAAAATGAACGTGA 59.966 45.455 0.00 0.00 0.00 4.35
547 552 5.971202 GTCAAAAATGAACGTGACAGTGATT 59.029 36.000 0.00 0.00 40.10 2.57
550 555 2.785713 TGAACGTGACAGTGATTCGA 57.214 45.000 0.00 0.00 0.00 3.71
552 557 1.382419 GAACGTGACAGTGATTCGACG 59.618 52.381 0.00 0.00 0.00 5.12
553 558 0.386858 ACGTGACAGTGATTCGACGG 60.387 55.000 0.00 0.00 0.00 4.79
557 562 1.611977 TGACAGTGATTCGACGGAACT 59.388 47.619 0.00 0.00 34.37 3.01
559 564 0.716108 CAGTGATTCGACGGAACTGC 59.284 55.000 0.00 0.00 34.37 4.40
563 568 0.093026 GATTCGACGGAACTGCGTTG 59.907 55.000 4.75 4.75 34.37 4.10
564 569 1.289109 ATTCGACGGAACTGCGTTGG 61.289 55.000 10.60 1.12 34.37 3.77
568 573 0.669318 GACGGAACTGCGTTGGATGA 60.669 55.000 0.00 0.00 0.00 2.92
576 581 2.223479 ACTGCGTTGGATGACAAAACAC 60.223 45.455 0.00 0.00 41.58 3.32
579 584 3.181482 TGCGTTGGATGACAAAACACATT 60.181 39.130 0.00 0.00 41.58 2.71
580 585 3.801594 GCGTTGGATGACAAAACACATTT 59.198 39.130 0.00 0.00 41.58 2.32
582 587 5.460419 GCGTTGGATGACAAAACACATTTAA 59.540 36.000 0.00 0.00 41.58 1.52
593 598 3.465122 ACACATTTAAATCGTGCGGTC 57.535 42.857 20.91 0.00 33.89 4.79
640 657 3.885297 TGCCTTAAGAATAGCATTGCTCC 59.115 43.478 15.81 6.00 40.44 4.70
707 726 1.063469 GCACATAATTTGTACCGCGCT 59.937 47.619 5.56 0.00 36.57 5.92
808 828 2.742372 CCACGTGAAGCCCTTCGG 60.742 66.667 19.30 0.00 42.28 4.30
845 865 1.356527 GGCCCACGTTACTTACTGCG 61.357 60.000 0.00 0.00 0.00 5.18
863 883 2.159639 TGCGTTGCATTATTGGTACGTG 60.160 45.455 0.00 0.00 31.71 4.49
900 923 1.082117 AATGGTGACGACGGCGATTC 61.082 55.000 22.49 5.82 41.64 2.52
910 933 4.164294 ACGACGGCGATTCTATATTTAGC 58.836 43.478 22.49 0.00 41.64 3.09
923 946 1.382522 ATTTAGCCATGTGCCTCACG 58.617 50.000 2.95 0.00 42.71 4.35
991 1021 1.086634 GCTAGCCAGAAAGAGCGGTG 61.087 60.000 2.29 0.00 0.00 4.94
994 1024 2.032528 CCAGAAAGAGCGGTGCCA 59.967 61.111 0.00 0.00 0.00 4.92
1110 1140 4.253273 GCGAACGAGACGATGCGC 62.253 66.667 0.00 0.00 37.17 6.09
1113 1143 2.202623 AACGAGACGATGCGCTCC 60.203 61.111 9.73 0.00 30.64 4.70
1323 1366 1.583967 CCTCTAAGCGTGCGTCTCG 60.584 63.158 0.00 0.00 0.00 4.04
1364 1407 3.674682 GCTTGCAAGGTGTGTGTTAAACA 60.675 43.478 27.10 0.00 36.04 2.83
1386 1482 3.937079 ACTGTACTACGTGTGATCGATCA 59.063 43.478 23.99 23.99 34.70 2.92
1398 1494 6.132056 GTGTGATCGATCATTAGACATTTGC 58.868 40.000 29.53 13.25 39.30 3.68
1401 1497 5.175673 TGATCGATCATTAGACATTTGCGTC 59.824 40.000 23.99 0.00 36.08 5.19
1402 1498 8.884751 GTGATCGATCATTAGACATTTGCGTCT 61.885 40.741 29.53 0.00 42.86 4.18
1403 1499 4.504097 TCGATCATTAGACATTTGCGTCTG 59.496 41.667 3.88 0.00 45.79 3.51
1404 1500 4.268644 CGATCATTAGACATTTGCGTCTGT 59.731 41.667 3.88 0.00 45.79 3.41
1405 1501 4.926860 TCATTAGACATTTGCGTCTGTG 57.073 40.909 3.88 3.58 45.79 3.66
1406 1502 4.314961 TCATTAGACATTTGCGTCTGTGT 58.685 39.130 3.88 0.00 45.79 3.72
1407 1503 4.152223 TCATTAGACATTTGCGTCTGTGTG 59.848 41.667 3.88 1.13 45.79 3.82
1408 1504 1.953559 AGACATTTGCGTCTGTGTGT 58.046 45.000 0.00 0.00 44.59 3.72
1409 1505 1.867233 AGACATTTGCGTCTGTGTGTC 59.133 47.619 0.00 0.00 44.59 3.67
1410 1506 1.597195 GACATTTGCGTCTGTGTGTCA 59.403 47.619 0.00 0.00 36.78 3.58
1411 1507 2.221169 ACATTTGCGTCTGTGTGTCAT 58.779 42.857 0.00 0.00 0.00 3.06
1412 1508 2.618241 ACATTTGCGTCTGTGTGTCATT 59.382 40.909 0.00 0.00 0.00 2.57
1413 1509 3.066621 ACATTTGCGTCTGTGTGTCATTT 59.933 39.130 0.00 0.00 0.00 2.32
1414 1510 2.753989 TTGCGTCTGTGTGTCATTTG 57.246 45.000 0.00 0.00 0.00 2.32
1415 1511 1.662517 TGCGTCTGTGTGTCATTTGT 58.337 45.000 0.00 0.00 0.00 2.83
1416 1512 2.013400 TGCGTCTGTGTGTCATTTGTT 58.987 42.857 0.00 0.00 0.00 2.83
1417 1513 2.223226 TGCGTCTGTGTGTCATTTGTTG 60.223 45.455 0.00 0.00 0.00 3.33
1418 1514 2.223249 GCGTCTGTGTGTCATTTGTTGT 60.223 45.455 0.00 0.00 0.00 3.32
1419 1515 3.001838 GCGTCTGTGTGTCATTTGTTGTA 59.998 43.478 0.00 0.00 0.00 2.41
1420 1516 4.514506 CGTCTGTGTGTCATTTGTTGTAC 58.485 43.478 0.00 0.00 0.00 2.90
1421 1517 4.514506 GTCTGTGTGTCATTTGTTGTACG 58.485 43.478 0.00 0.00 0.00 3.67
1422 1518 4.033587 GTCTGTGTGTCATTTGTTGTACGT 59.966 41.667 0.00 0.00 0.00 3.57
1423 1519 4.033472 TCTGTGTGTCATTTGTTGTACGTG 59.967 41.667 0.00 0.00 0.00 4.49
1424 1520 3.685272 TGTGTGTCATTTGTTGTACGTGT 59.315 39.130 0.00 0.00 0.00 4.49
1425 1521 4.025750 GTGTGTCATTTGTTGTACGTGTG 58.974 43.478 0.00 0.00 0.00 3.82
1426 1522 3.933332 TGTGTCATTTGTTGTACGTGTGA 59.067 39.130 0.00 0.00 0.00 3.58
1427 1523 4.572795 TGTGTCATTTGTTGTACGTGTGAT 59.427 37.500 0.00 0.00 0.00 3.06
1428 1524 5.065346 TGTGTCATTTGTTGTACGTGTGATT 59.935 36.000 0.00 0.00 0.00 2.57
1429 1525 5.395195 GTGTCATTTGTTGTACGTGTGATTG 59.605 40.000 0.00 0.00 0.00 2.67
1430 1526 5.294552 TGTCATTTGTTGTACGTGTGATTGA 59.705 36.000 0.00 0.00 0.00 2.57
1431 1527 6.017523 TGTCATTTGTTGTACGTGTGATTGAT 60.018 34.615 0.00 0.00 0.00 2.57
1432 1528 6.519761 GTCATTTGTTGTACGTGTGATTGATC 59.480 38.462 0.00 0.00 0.00 2.92
1433 1529 4.639189 TTGTTGTACGTGTGATTGATCG 57.361 40.909 0.00 0.00 0.00 3.69
1434 1530 3.644823 TGTTGTACGTGTGATTGATCGT 58.355 40.909 0.00 0.00 39.74 3.73
1435 1531 4.052608 TGTTGTACGTGTGATTGATCGTT 58.947 39.130 0.00 0.00 37.66 3.85
1436 1532 4.084797 TGTTGTACGTGTGATTGATCGTTG 60.085 41.667 0.00 0.00 37.66 4.10
1437 1533 3.644823 TGTACGTGTGATTGATCGTTGT 58.355 40.909 0.00 0.00 37.66 3.32
1438 1534 3.427193 TGTACGTGTGATTGATCGTTGTG 59.573 43.478 0.00 0.00 37.66 3.33
1439 1535 1.194547 ACGTGTGATTGATCGTTGTGC 59.805 47.619 0.00 0.00 32.62 4.57
1440 1536 1.783067 CGTGTGATTGATCGTTGTGCG 60.783 52.381 0.00 0.00 43.01 5.34
1441 1537 1.194547 GTGTGATTGATCGTTGTGCGT 59.805 47.619 0.00 0.00 42.13 5.24
1442 1538 1.194322 TGTGATTGATCGTTGTGCGTG 59.806 47.619 0.00 0.00 42.13 5.34
1443 1539 1.194547 GTGATTGATCGTTGTGCGTGT 59.805 47.619 0.00 0.00 42.13 4.49
1444 1540 1.194322 TGATTGATCGTTGTGCGTGTG 59.806 47.619 0.00 0.00 42.13 3.82
1445 1541 1.459209 GATTGATCGTTGTGCGTGTGA 59.541 47.619 0.00 0.00 42.13 3.58
1446 1542 0.579630 TTGATCGTTGTGCGTGTGAC 59.420 50.000 0.00 0.00 42.13 3.67
1491 1588 1.126438 CGTTTCCGTGTTCGTACGC 59.874 57.895 11.24 0.00 42.44 4.42
1494 1591 0.595588 TTTCCGTGTTCGTACGCCTA 59.404 50.000 11.24 0.00 42.44 3.93
1496 1593 0.168788 TCCGTGTTCGTACGCCTAAG 59.831 55.000 11.24 1.67 42.44 2.18
1498 1595 0.455633 CGTGTTCGTACGCCTAAGCT 60.456 55.000 11.24 0.00 37.24 3.74
1503 1600 2.675767 TCGTACGCCTAAGCTAATCG 57.324 50.000 11.24 0.00 36.60 3.34
1504 1601 1.942657 TCGTACGCCTAAGCTAATCGT 59.057 47.619 11.24 8.02 36.60 3.73
1505 1602 2.041966 CGTACGCCTAAGCTAATCGTG 58.958 52.381 0.52 0.00 36.60 4.35
1506 1603 2.540361 CGTACGCCTAAGCTAATCGTGT 60.540 50.000 0.52 4.55 36.60 4.49
1507 1604 1.922570 ACGCCTAAGCTAATCGTGTG 58.077 50.000 0.00 0.00 36.60 3.82
1508 1605 1.209128 CGCCTAAGCTAATCGTGTGG 58.791 55.000 0.00 0.00 36.60 4.17
1509 1606 0.938008 GCCTAAGCTAATCGTGTGGC 59.062 55.000 0.00 0.00 35.50 5.01
1510 1607 1.473434 GCCTAAGCTAATCGTGTGGCT 60.473 52.381 0.00 0.00 36.52 4.75
1511 1608 2.906354 CCTAAGCTAATCGTGTGGCTT 58.094 47.619 13.96 13.96 45.30 4.35
1512 1609 3.740141 GCCTAAGCTAATCGTGTGGCTTA 60.740 47.826 14.53 14.53 43.47 3.09
1513 1610 4.632153 CCTAAGCTAATCGTGTGGCTTAT 58.368 43.478 15.26 0.00 43.33 1.73
1514 1611 4.449068 CCTAAGCTAATCGTGTGGCTTATG 59.551 45.833 15.26 10.95 43.33 1.90
1515 1612 3.543680 AGCTAATCGTGTGGCTTATGT 57.456 42.857 0.00 0.00 0.00 2.29
1516 1613 3.198068 AGCTAATCGTGTGGCTTATGTG 58.802 45.455 0.00 0.00 0.00 3.21
1517 1614 2.936498 GCTAATCGTGTGGCTTATGTGT 59.064 45.455 0.00 0.00 0.00 3.72
1518 1615 3.242413 GCTAATCGTGTGGCTTATGTGTG 60.242 47.826 0.00 0.00 0.00 3.82
1519 1616 2.472695 ATCGTGTGGCTTATGTGTGT 57.527 45.000 0.00 0.00 0.00 3.72
1520 1617 1.790755 TCGTGTGGCTTATGTGTGTC 58.209 50.000 0.00 0.00 0.00 3.67
1521 1618 0.796312 CGTGTGGCTTATGTGTGTCC 59.204 55.000 0.00 0.00 0.00 4.02
1522 1619 1.165270 GTGTGGCTTATGTGTGTCCC 58.835 55.000 0.00 0.00 0.00 4.46
1523 1620 0.321210 TGTGGCTTATGTGTGTCCCG 60.321 55.000 0.00 0.00 0.00 5.14
1524 1621 0.321298 GTGGCTTATGTGTGTCCCGT 60.321 55.000 0.00 0.00 0.00 5.28
1525 1622 0.398696 TGGCTTATGTGTGTCCCGTT 59.601 50.000 0.00 0.00 0.00 4.44
1526 1623 1.202830 TGGCTTATGTGTGTCCCGTTT 60.203 47.619 0.00 0.00 0.00 3.60
1527 1624 1.883926 GGCTTATGTGTGTCCCGTTTT 59.116 47.619 0.00 0.00 0.00 2.43
1528 1625 2.295070 GGCTTATGTGTGTCCCGTTTTT 59.705 45.455 0.00 0.00 0.00 1.94
1529 1626 3.305110 GCTTATGTGTGTCCCGTTTTTG 58.695 45.455 0.00 0.00 0.00 2.44
1530 1627 3.243267 GCTTATGTGTGTCCCGTTTTTGT 60.243 43.478 0.00 0.00 0.00 2.83
1531 1628 4.533222 CTTATGTGTGTCCCGTTTTTGTC 58.467 43.478 0.00 0.00 0.00 3.18
1532 1629 2.116827 TGTGTGTCCCGTTTTTGTCT 57.883 45.000 0.00 0.00 0.00 3.41
1533 1630 2.438411 TGTGTGTCCCGTTTTTGTCTT 58.562 42.857 0.00 0.00 0.00 3.01
1534 1631 2.820787 TGTGTGTCCCGTTTTTGTCTTT 59.179 40.909 0.00 0.00 0.00 2.52
1535 1632 3.256136 TGTGTGTCCCGTTTTTGTCTTTT 59.744 39.130 0.00 0.00 0.00 2.27
1536 1633 3.855379 GTGTGTCCCGTTTTTGTCTTTTC 59.145 43.478 0.00 0.00 0.00 2.29
1537 1634 3.103007 GTGTCCCGTTTTTGTCTTTTCG 58.897 45.455 0.00 0.00 0.00 3.46
1538 1635 2.114056 GTCCCGTTTTTGTCTTTTCGC 58.886 47.619 0.00 0.00 0.00 4.70
1539 1636 2.018515 TCCCGTTTTTGTCTTTTCGCT 58.981 42.857 0.00 0.00 0.00 4.93
1540 1637 3.002553 GTCCCGTTTTTGTCTTTTCGCTA 59.997 43.478 0.00 0.00 0.00 4.26
1541 1638 3.249080 TCCCGTTTTTGTCTTTTCGCTAG 59.751 43.478 0.00 0.00 0.00 3.42
1542 1639 2.971261 CCGTTTTTGTCTTTTCGCTAGC 59.029 45.455 4.06 4.06 0.00 3.42
1543 1640 2.971261 CGTTTTTGTCTTTTCGCTAGCC 59.029 45.455 9.66 0.00 0.00 3.93
1544 1641 3.547214 CGTTTTTGTCTTTTCGCTAGCCA 60.547 43.478 9.66 0.00 0.00 4.75
1545 1642 3.619233 TTTTGTCTTTTCGCTAGCCAC 57.381 42.857 9.66 0.00 0.00 5.01
1546 1643 1.519408 TTGTCTTTTCGCTAGCCACC 58.481 50.000 9.66 0.00 0.00 4.61
1547 1644 0.669318 TGTCTTTTCGCTAGCCACCG 60.669 55.000 9.66 0.00 0.00 4.94
1548 1645 0.389426 GTCTTTTCGCTAGCCACCGA 60.389 55.000 9.66 0.00 0.00 4.69
1549 1646 0.319083 TCTTTTCGCTAGCCACCGAA 59.681 50.000 9.66 3.80 41.17 4.30
1550 1647 1.066430 TCTTTTCGCTAGCCACCGAAT 60.066 47.619 9.66 0.00 42.24 3.34
1551 1648 1.737793 CTTTTCGCTAGCCACCGAATT 59.262 47.619 9.66 0.00 42.24 2.17
1552 1649 2.676632 TTTCGCTAGCCACCGAATTA 57.323 45.000 9.66 0.00 42.24 1.40
1553 1650 2.676632 TTCGCTAGCCACCGAATTAA 57.323 45.000 9.66 0.00 38.40 1.40
1554 1651 2.218953 TCGCTAGCCACCGAATTAAG 57.781 50.000 9.66 0.00 0.00 1.85
1555 1652 1.752498 TCGCTAGCCACCGAATTAAGA 59.248 47.619 9.66 0.00 0.00 2.10
1556 1653 2.364324 TCGCTAGCCACCGAATTAAGAT 59.636 45.455 9.66 0.00 0.00 2.40
1557 1654 3.131396 CGCTAGCCACCGAATTAAGATT 58.869 45.455 9.66 0.00 0.00 2.40
1558 1655 3.184581 CGCTAGCCACCGAATTAAGATTC 59.815 47.826 9.66 0.00 38.62 2.52
1559 1656 3.498777 GCTAGCCACCGAATTAAGATTCC 59.501 47.826 2.29 0.00 38.76 3.01
1560 1657 3.644966 AGCCACCGAATTAAGATTCCA 57.355 42.857 0.00 0.00 38.76 3.53
1561 1658 3.545703 AGCCACCGAATTAAGATTCCAG 58.454 45.455 0.00 0.00 38.76 3.86
1562 1659 2.618709 GCCACCGAATTAAGATTCCAGG 59.381 50.000 0.00 0.00 38.76 4.45
1563 1660 3.684413 GCCACCGAATTAAGATTCCAGGA 60.684 47.826 0.00 0.00 38.76 3.86
1564 1661 4.718961 CCACCGAATTAAGATTCCAGGAT 58.281 43.478 0.00 0.00 38.76 3.24
1565 1662 5.133221 CCACCGAATTAAGATTCCAGGATT 58.867 41.667 0.00 0.00 38.76 3.01
1566 1663 5.009010 CCACCGAATTAAGATTCCAGGATTG 59.991 44.000 0.00 0.00 38.76 2.67
1567 1664 4.580580 ACCGAATTAAGATTCCAGGATTGC 59.419 41.667 0.00 0.00 38.76 3.56
1568 1665 4.022849 CCGAATTAAGATTCCAGGATTGCC 60.023 45.833 0.00 0.00 38.76 4.52
1569 1666 4.580167 CGAATTAAGATTCCAGGATTGCCA 59.420 41.667 0.00 0.00 38.76 4.92
1570 1667 5.278169 CGAATTAAGATTCCAGGATTGCCAG 60.278 44.000 0.00 0.00 38.76 4.85
1571 1668 4.591321 TTAAGATTCCAGGATTGCCAGT 57.409 40.909 0.00 0.00 36.29 4.00
1572 1669 2.431954 AGATTCCAGGATTGCCAGTG 57.568 50.000 0.00 0.00 36.29 3.66
1573 1670 1.637553 AGATTCCAGGATTGCCAGTGT 59.362 47.619 0.00 0.00 36.29 3.55
1574 1671 1.747355 GATTCCAGGATTGCCAGTGTG 59.253 52.381 0.00 0.00 36.29 3.82
1575 1672 0.478072 TTCCAGGATTGCCAGTGTGT 59.522 50.000 0.00 0.00 36.29 3.72
1576 1673 0.250858 TCCAGGATTGCCAGTGTGTG 60.251 55.000 0.00 0.00 36.29 3.82
1577 1674 1.582968 CAGGATTGCCAGTGTGTGC 59.417 57.895 0.00 0.00 36.29 4.57
1578 1675 0.892358 CAGGATTGCCAGTGTGTGCT 60.892 55.000 0.00 0.00 36.29 4.40
1579 1676 0.692476 AGGATTGCCAGTGTGTGCTA 59.308 50.000 0.00 0.00 36.29 3.49
1580 1677 0.804989 GGATTGCCAGTGTGTGCTAC 59.195 55.000 0.00 0.00 0.00 3.58
1581 1678 1.611673 GGATTGCCAGTGTGTGCTACT 60.612 52.381 0.00 0.00 0.00 2.57
1582 1679 1.734465 GATTGCCAGTGTGTGCTACTC 59.266 52.381 0.00 0.00 0.00 2.59
1583 1680 0.250295 TTGCCAGTGTGTGCTACTCC 60.250 55.000 0.00 0.00 0.00 3.85
1584 1681 1.121407 TGCCAGTGTGTGCTACTCCT 61.121 55.000 0.00 0.00 0.00 3.69
1585 1682 0.895530 GCCAGTGTGTGCTACTCCTA 59.104 55.000 0.00 0.00 0.00 2.94
1586 1683 1.482593 GCCAGTGTGTGCTACTCCTAT 59.517 52.381 0.00 0.00 0.00 2.57
1587 1684 2.093447 GCCAGTGTGTGCTACTCCTATT 60.093 50.000 0.00 0.00 0.00 1.73
1588 1685 3.525537 CCAGTGTGTGCTACTCCTATTG 58.474 50.000 0.00 0.00 0.00 1.90
1589 1686 3.195610 CCAGTGTGTGCTACTCCTATTGA 59.804 47.826 0.00 0.00 0.00 2.57
1590 1687 4.141846 CCAGTGTGTGCTACTCCTATTGAT 60.142 45.833 0.00 0.00 0.00 2.57
1591 1688 5.423015 CAGTGTGTGCTACTCCTATTGATT 58.577 41.667 0.00 0.00 0.00 2.57
1592 1689 5.292834 CAGTGTGTGCTACTCCTATTGATTG 59.707 44.000 0.00 0.00 0.00 2.67
1593 1690 4.572389 GTGTGTGCTACTCCTATTGATTGG 59.428 45.833 0.00 0.00 0.00 3.16
1594 1691 4.469586 TGTGTGCTACTCCTATTGATTGGA 59.530 41.667 0.00 0.00 0.00 3.53
1600 1697 3.037431 CTCCTATTGATTGGAGCTCCG 57.963 52.381 27.43 10.47 41.54 4.63
1601 1698 2.366916 CTCCTATTGATTGGAGCTCCGT 59.633 50.000 27.43 18.69 41.54 4.69
1602 1699 3.572642 TCCTATTGATTGGAGCTCCGTA 58.427 45.455 27.43 18.28 39.43 4.02
1603 1700 3.964688 TCCTATTGATTGGAGCTCCGTAA 59.035 43.478 27.43 17.57 39.43 3.18
1604 1701 4.039245 TCCTATTGATTGGAGCTCCGTAAG 59.961 45.833 27.43 15.99 39.43 2.34
1605 1702 4.039245 CCTATTGATTGGAGCTCCGTAAGA 59.961 45.833 27.43 14.91 39.43 2.10
1606 1703 3.526931 TTGATTGGAGCTCCGTAAGAG 57.473 47.619 27.43 0.00 46.29 2.85
1607 1704 2.457598 TGATTGGAGCTCCGTAAGAGT 58.542 47.619 27.43 6.51 45.21 3.24
1608 1705 3.628008 TGATTGGAGCTCCGTAAGAGTA 58.372 45.455 27.43 4.53 45.21 2.59
1609 1706 3.632604 TGATTGGAGCTCCGTAAGAGTAG 59.367 47.826 27.43 0.00 45.21 2.57
1610 1707 2.803030 TGGAGCTCCGTAAGAGTAGT 57.197 50.000 27.43 0.00 45.21 2.73
1611 1708 3.920231 TGGAGCTCCGTAAGAGTAGTA 57.080 47.619 27.43 2.35 45.21 1.82
1612 1709 3.539604 TGGAGCTCCGTAAGAGTAGTAC 58.460 50.000 27.43 0.00 45.21 2.73
1613 1710 3.199508 TGGAGCTCCGTAAGAGTAGTACT 59.800 47.826 27.43 1.37 45.21 2.73
1614 1711 4.406972 TGGAGCTCCGTAAGAGTAGTACTA 59.593 45.833 27.43 0.00 45.21 1.82
1615 1712 5.104776 TGGAGCTCCGTAAGAGTAGTACTAA 60.105 44.000 27.43 0.51 45.21 2.24
1616 1713 5.997129 GGAGCTCCGTAAGAGTAGTACTAAT 59.003 44.000 19.06 2.68 45.21 1.73
1617 1714 7.158021 GGAGCTCCGTAAGAGTAGTACTAATA 58.842 42.308 19.06 0.00 45.21 0.98
1618 1715 7.823799 GGAGCTCCGTAAGAGTAGTACTAATAT 59.176 40.741 19.06 0.00 45.21 1.28
1619 1716 9.218440 GAGCTCCGTAAGAGTAGTACTAATATT 57.782 37.037 13.96 13.96 45.21 1.28
1642 1739 7.892778 TTATTCGTGCTCATAACAAGTTACA 57.107 32.000 0.00 0.00 0.00 2.41
1643 1740 5.585500 TTCGTGCTCATAACAAGTTACAC 57.415 39.130 0.00 0.00 0.00 2.90
1644 1741 4.878439 TCGTGCTCATAACAAGTTACACT 58.122 39.130 0.00 0.00 0.00 3.55
1645 1742 4.684242 TCGTGCTCATAACAAGTTACACTG 59.316 41.667 0.00 0.00 0.00 3.66
1646 1743 4.684242 CGTGCTCATAACAAGTTACACTGA 59.316 41.667 0.00 0.00 0.00 3.41
1647 1744 5.348724 CGTGCTCATAACAAGTTACACTGAT 59.651 40.000 0.00 0.00 0.00 2.90
1648 1745 6.128553 CGTGCTCATAACAAGTTACACTGATT 60.129 38.462 0.00 0.00 0.00 2.57
1649 1746 7.571244 CGTGCTCATAACAAGTTACACTGATTT 60.571 37.037 0.00 0.00 0.00 2.17
1650 1747 8.076178 GTGCTCATAACAAGTTACACTGATTTT 58.924 33.333 0.00 0.00 0.00 1.82
1651 1748 8.075574 TGCTCATAACAAGTTACACTGATTTTG 58.924 33.333 0.00 0.00 0.00 2.44
1652 1749 8.289618 GCTCATAACAAGTTACACTGATTTTGA 58.710 33.333 0.00 0.00 0.00 2.69
1653 1750 9.599322 CTCATAACAAGTTACACTGATTTTGAC 57.401 33.333 0.00 0.00 0.00 3.18
1654 1751 8.564574 TCATAACAAGTTACACTGATTTTGACC 58.435 33.333 0.00 0.00 0.00 4.02
1655 1752 8.567948 CATAACAAGTTACACTGATTTTGACCT 58.432 33.333 0.00 0.00 0.00 3.85
1656 1753 9.787435 ATAACAAGTTACACTGATTTTGACCTA 57.213 29.630 0.00 0.00 0.00 3.08
1657 1754 8.514330 AACAAGTTACACTGATTTTGACCTAA 57.486 30.769 0.00 0.00 0.00 2.69
1658 1755 8.691661 ACAAGTTACACTGATTTTGACCTAAT 57.308 30.769 0.00 0.00 0.00 1.73
1659 1756 9.787435 ACAAGTTACACTGATTTTGACCTAATA 57.213 29.630 0.00 0.00 0.00 0.98
1662 1759 9.614792 AGTTACACTGATTTTGACCTAATATCC 57.385 33.333 0.00 0.00 0.00 2.59
1663 1760 9.391006 GTTACACTGATTTTGACCTAATATCCA 57.609 33.333 0.00 0.00 0.00 3.41
1664 1761 9.967451 TTACACTGATTTTGACCTAATATCCAA 57.033 29.630 0.00 0.00 0.00 3.53
1665 1762 8.511604 ACACTGATTTTGACCTAATATCCAAG 57.488 34.615 0.00 0.00 0.00 3.61
1666 1763 8.328758 ACACTGATTTTGACCTAATATCCAAGA 58.671 33.333 0.00 0.00 0.00 3.02
1667 1764 9.177608 CACTGATTTTGACCTAATATCCAAGAA 57.822 33.333 0.00 0.00 0.00 2.52
1668 1765 9.753674 ACTGATTTTGACCTAATATCCAAGAAA 57.246 29.630 0.00 0.00 0.00 2.52
1687 1784 9.918630 CCAAGAAAATACAATGAAATCTCTTGT 57.081 29.630 13.49 6.99 36.91 3.16
1709 1806 4.574013 GTGGTATCAATCTCTGCTCAAAGG 59.426 45.833 0.00 0.00 0.00 3.11
1723 1820 5.819991 TGCTCAAAGGAATACTCCAAAGAT 58.180 37.500 0.00 0.00 45.24 2.40
1728 1825 8.704849 TCAAAGGAATACTCCAAAGATTTTGA 57.295 30.769 0.00 0.00 45.24 2.69
1739 1836 8.109634 ACTCCAAAGATTTTGATAAAGAGGCTA 58.890 33.333 3.24 0.00 0.00 3.93
1785 1885 1.006102 ACTCTTTCACCCGCACGAG 60.006 57.895 0.00 0.00 0.00 4.18
1847 1947 4.439057 CATCCAAAAAGATGGGAAGCATG 58.561 43.478 0.00 0.00 40.03 4.06
1881 1982 4.514594 TGGGCCGGGGATGATCCT 62.515 66.667 11.87 0.00 36.57 3.24
1912 2013 3.245797 CAGGCCGTCGAATCACTATATG 58.754 50.000 0.00 0.00 0.00 1.78
1934 2037 3.133141 TCACCATGGTGTCGATGAAAA 57.867 42.857 37.49 17.44 45.55 2.29
1938 2041 4.858692 CACCATGGTGTCGATGAAAAATTC 59.141 41.667 32.94 0.00 40.91 2.17
1947 2050 4.009675 TCGATGAAAAATTCCACCTCCAG 58.990 43.478 0.00 0.00 0.00 3.86
2065 2173 1.574428 CACCGCCAAAAGAACGAGG 59.426 57.895 0.00 0.00 0.00 4.63
2066 2174 0.882927 CACCGCCAAAAGAACGAGGA 60.883 55.000 0.00 0.00 0.00 3.71
2122 2230 7.918033 CACTAGACATCAACGAAGAACATAGAT 59.082 37.037 0.00 0.00 0.00 1.98
2141 2249 5.176741 AGATGTCTTGAAGATTTGAGGCT 57.823 39.130 0.00 0.00 0.00 4.58
2211 2323 2.111878 GCAGATGGTGGCGGCTAT 59.888 61.111 11.43 1.77 0.00 2.97
2212 2324 1.963338 GCAGATGGTGGCGGCTATC 60.963 63.158 11.43 11.47 0.00 2.08
2213 2325 1.447217 CAGATGGTGGCGGCTATCA 59.553 57.895 11.43 0.56 0.00 2.15
2214 2326 0.179048 CAGATGGTGGCGGCTATCAA 60.179 55.000 11.43 0.00 0.00 2.57
2215 2327 0.546122 AGATGGTGGCGGCTATCAAA 59.454 50.000 11.43 0.00 0.00 2.69
2216 2328 0.947244 GATGGTGGCGGCTATCAAAG 59.053 55.000 11.43 0.00 0.00 2.77
2217 2329 0.466189 ATGGTGGCGGCTATCAAAGG 60.466 55.000 11.43 0.00 0.00 3.11
2230 2342 5.894807 GCTATCAAAGGCTAAATTGAAGCA 58.105 37.500 18.80 5.39 41.93 3.91
2231 2343 6.510536 GCTATCAAAGGCTAAATTGAAGCAT 58.489 36.000 18.80 5.14 41.93 3.79
2232 2344 7.651808 GCTATCAAAGGCTAAATTGAAGCATA 58.348 34.615 18.80 3.77 41.93 3.14
2233 2345 8.137437 GCTATCAAAGGCTAAATTGAAGCATAA 58.863 33.333 18.80 0.00 41.93 1.90
2236 2348 8.931385 TCAAAGGCTAAATTGAAGCATAAATC 57.069 30.769 13.40 0.00 41.93 2.17
2237 2349 8.530311 TCAAAGGCTAAATTGAAGCATAAATCA 58.470 29.630 13.40 0.00 41.93 2.57
2238 2350 8.814235 CAAAGGCTAAATTGAAGCATAAATCAG 58.186 33.333 13.40 0.00 41.93 2.90
2239 2351 7.047460 AGGCTAAATTGAAGCATAAATCAGG 57.953 36.000 13.40 0.00 41.93 3.86
2240 2352 6.608808 AGGCTAAATTGAAGCATAAATCAGGT 59.391 34.615 13.40 0.00 41.93 4.00
2241 2353 7.124750 AGGCTAAATTGAAGCATAAATCAGGTT 59.875 33.333 13.40 0.00 41.93 3.50
2242 2354 7.223387 GGCTAAATTGAAGCATAAATCAGGTTG 59.777 37.037 13.40 0.00 41.93 3.77
2243 2355 7.223387 GCTAAATTGAAGCATAAATCAGGTTGG 59.777 37.037 7.92 0.00 39.83 3.77
2244 2356 5.603170 ATTGAAGCATAAATCAGGTTGGG 57.397 39.130 0.00 0.00 0.00 4.12
2245 2357 4.314522 TGAAGCATAAATCAGGTTGGGA 57.685 40.909 0.00 0.00 0.00 4.37
2246 2358 4.671831 TGAAGCATAAATCAGGTTGGGAA 58.328 39.130 0.00 0.00 0.00 3.97
2247 2359 4.706476 TGAAGCATAAATCAGGTTGGGAAG 59.294 41.667 0.00 0.00 0.00 3.46
2248 2360 3.635591 AGCATAAATCAGGTTGGGAAGG 58.364 45.455 0.00 0.00 0.00 3.46
2249 2361 3.269381 AGCATAAATCAGGTTGGGAAGGA 59.731 43.478 0.00 0.00 0.00 3.36
2250 2362 3.381590 GCATAAATCAGGTTGGGAAGGAC 59.618 47.826 0.00 0.00 0.00 3.85
2251 2363 4.860022 CATAAATCAGGTTGGGAAGGACT 58.140 43.478 0.00 0.00 0.00 3.85
2252 2364 3.903530 AAATCAGGTTGGGAAGGACTT 57.096 42.857 0.00 0.00 0.00 3.01
2253 2365 6.423182 CATAAATCAGGTTGGGAAGGACTTA 58.577 40.000 0.00 0.00 0.00 2.24
2254 2366 4.302559 AATCAGGTTGGGAAGGACTTAC 57.697 45.455 0.00 0.00 0.00 2.34
2255 2367 1.982958 TCAGGTTGGGAAGGACTTACC 59.017 52.381 6.36 6.36 44.03 2.85
2256 2368 0.981943 AGGTTGGGAAGGACTTACCG 59.018 55.000 8.72 0.00 46.79 4.02
2257 2369 0.675837 GGTTGGGAAGGACTTACCGC 60.676 60.000 8.72 4.35 46.79 5.68
2258 2370 0.675837 GTTGGGAAGGACTTACCGCC 60.676 60.000 8.72 0.00 46.79 6.13
2259 2371 2.175035 TTGGGAAGGACTTACCGCCG 62.175 60.000 8.72 0.00 46.79 6.46
2260 2372 2.653087 GGGAAGGACTTACCGCCGT 61.653 63.158 0.00 0.00 44.74 5.68
2261 2373 1.153686 GGAAGGACTTACCGCCGTC 60.154 63.158 0.00 0.00 44.74 4.79
2262 2374 1.515736 GAAGGACTTACCGCCGTCG 60.516 63.158 0.00 0.00 44.74 5.12
2263 2375 1.926511 GAAGGACTTACCGCCGTCGA 61.927 60.000 0.00 0.00 44.74 4.20
2264 2376 1.318158 AAGGACTTACCGCCGTCGAT 61.318 55.000 0.00 0.00 44.74 3.59
2265 2377 1.588139 GGACTTACCGCCGTCGATG 60.588 63.158 0.00 0.00 38.10 3.84
2266 2378 1.430632 GACTTACCGCCGTCGATGA 59.569 57.895 6.11 0.00 38.10 2.92
2267 2379 0.179156 GACTTACCGCCGTCGATGAA 60.179 55.000 6.11 0.00 38.10 2.57
2268 2380 0.179145 ACTTACCGCCGTCGATGAAG 60.179 55.000 6.11 3.88 38.10 3.02
2269 2381 0.179145 CTTACCGCCGTCGATGAAGT 60.179 55.000 6.11 2.92 38.10 3.01
2270 2382 0.457166 TTACCGCCGTCGATGAAGTG 60.457 55.000 6.11 0.00 38.10 3.16
2271 2383 2.274232 TACCGCCGTCGATGAAGTGG 62.274 60.000 6.11 8.97 38.10 4.00
2272 2384 2.126071 CGCCGTCGATGAAGTGGT 60.126 61.111 6.11 0.00 38.10 4.16
2273 2385 2.444624 CGCCGTCGATGAAGTGGTG 61.445 63.158 6.11 0.00 38.10 4.17
2274 2386 1.080093 GCCGTCGATGAAGTGGTGA 60.080 57.895 6.11 0.00 0.00 4.02
2275 2387 0.460284 GCCGTCGATGAAGTGGTGAT 60.460 55.000 6.11 0.00 0.00 3.06
2276 2388 1.280982 CCGTCGATGAAGTGGTGATG 58.719 55.000 6.11 0.00 0.00 3.07
2277 2389 1.135112 CCGTCGATGAAGTGGTGATGA 60.135 52.381 6.11 0.00 0.00 2.92
2278 2390 2.606108 CGTCGATGAAGTGGTGATGAA 58.394 47.619 0.00 0.00 0.00 2.57
2279 2391 2.600420 CGTCGATGAAGTGGTGATGAAG 59.400 50.000 0.00 0.00 0.00 3.02
2280 2392 2.349886 GTCGATGAAGTGGTGATGAAGC 59.650 50.000 0.00 0.00 0.00 3.86
2281 2393 1.325640 CGATGAAGTGGTGATGAAGCG 59.674 52.381 0.00 0.00 0.00 4.68
2282 2394 1.063174 GATGAAGTGGTGATGAAGCGC 59.937 52.381 0.00 0.00 37.04 5.92
2284 2396 1.275010 TGAAGTGGTGATGAAGCGCTA 59.725 47.619 12.05 0.00 46.20 4.26
2285 2397 1.929836 GAAGTGGTGATGAAGCGCTAG 59.070 52.381 12.05 0.00 46.20 3.42
2286 2398 0.176680 AGTGGTGATGAAGCGCTAGG 59.823 55.000 12.05 0.00 45.11 3.02
2287 2399 0.811616 GTGGTGATGAAGCGCTAGGG 60.812 60.000 12.05 1.65 33.90 3.53
2288 2400 0.975556 TGGTGATGAAGCGCTAGGGA 60.976 55.000 12.05 0.00 0.00 4.20
2289 2401 0.394565 GGTGATGAAGCGCTAGGGAT 59.605 55.000 12.05 0.00 0.00 3.85
2290 2402 1.618837 GGTGATGAAGCGCTAGGGATA 59.381 52.381 12.05 0.00 0.00 2.59
2291 2403 2.353208 GGTGATGAAGCGCTAGGGATAG 60.353 54.545 12.05 0.00 0.00 2.08
2292 2404 2.297597 GTGATGAAGCGCTAGGGATAGT 59.702 50.000 12.05 0.00 0.00 2.12
2293 2405 2.558795 TGATGAAGCGCTAGGGATAGTC 59.441 50.000 12.05 1.65 0.00 2.59
2294 2406 0.952280 TGAAGCGCTAGGGATAGTCG 59.048 55.000 12.05 0.00 0.00 4.18
2295 2407 0.953003 GAAGCGCTAGGGATAGTCGT 59.047 55.000 12.05 0.00 0.00 4.34
2296 2408 0.953003 AAGCGCTAGGGATAGTCGTC 59.047 55.000 12.05 0.00 0.00 4.20
2297 2409 1.207085 GCGCTAGGGATAGTCGTCG 59.793 63.158 11.61 0.00 0.00 5.12
2298 2410 1.207085 CGCTAGGGATAGTCGTCGC 59.793 63.158 0.00 0.00 0.00 5.19
2299 2411 1.580437 GCTAGGGATAGTCGTCGCC 59.420 63.158 0.00 0.00 0.00 5.54
2300 2412 1.867615 CTAGGGATAGTCGTCGCCG 59.132 63.158 0.00 0.00 0.00 6.46
2301 2413 1.575576 CTAGGGATAGTCGTCGCCGG 61.576 65.000 0.00 0.00 33.95 6.13
2302 2414 2.329539 TAGGGATAGTCGTCGCCGGT 62.330 60.000 1.90 0.00 33.95 5.28
2303 2415 2.025727 GGATAGTCGTCGCCGGTG 59.974 66.667 9.28 9.28 33.95 4.94
2304 2416 2.475466 GGATAGTCGTCGCCGGTGA 61.475 63.158 15.21 15.21 33.95 4.02
2305 2417 1.653115 GATAGTCGTCGCCGGTGAT 59.347 57.895 22.69 7.60 33.95 3.06
2306 2418 0.385723 GATAGTCGTCGCCGGTGATC 60.386 60.000 22.69 14.44 33.95 2.92
2307 2419 2.114331 ATAGTCGTCGCCGGTGATCG 62.114 60.000 22.69 23.87 38.88 3.69
2308 2420 4.471726 GTCGTCGCCGGTGATCGT 62.472 66.667 27.19 0.00 37.11 3.73
2309 2421 3.740397 TCGTCGCCGGTGATCGTT 61.740 61.111 27.19 0.00 37.11 3.85
2310 2422 3.541831 CGTCGCCGGTGATCGTTG 61.542 66.667 22.69 5.42 37.11 4.10
2311 2423 2.431942 GTCGCCGGTGATCGTTGT 60.432 61.111 22.69 0.00 37.11 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.749044 ATTGCAGTCGGCTGGCAG 60.749 61.111 20.36 10.94 45.15 4.85
23 24 3.057548 CATTGCAGTCGGCTGGCA 61.058 61.111 20.36 14.32 45.15 4.92
24 25 3.818787 CCATTGCAGTCGGCTGGC 61.819 66.667 20.36 11.71 45.15 4.85
25 26 3.818787 GCCATTGCAGTCGGCTGG 61.819 66.667 20.36 3.09 45.15 4.85
26 27 4.170062 CGCCATTGCAGTCGGCTG 62.170 66.667 14.01 14.01 43.95 4.85
31 32 3.173390 GATCGCCGCCATTGCAGTC 62.173 63.158 0.00 0.00 37.32 3.51
32 33 3.204827 GATCGCCGCCATTGCAGT 61.205 61.111 0.00 0.00 37.32 4.40
33 34 2.890109 GAGATCGCCGCCATTGCAG 61.890 63.158 0.00 0.00 37.32 4.41
34 35 2.896854 GAGATCGCCGCCATTGCA 60.897 61.111 0.00 0.00 37.32 4.08
35 36 3.654020 GGAGATCGCCGCCATTGC 61.654 66.667 0.00 0.00 34.56 3.56
36 37 1.097547 AAAGGAGATCGCCGCCATTG 61.098 55.000 10.07 0.00 37.17 2.82
37 38 0.394352 AAAAGGAGATCGCCGCCATT 60.394 50.000 10.07 1.84 37.17 3.16
38 39 0.394352 AAAAAGGAGATCGCCGCCAT 60.394 50.000 10.07 0.00 37.17 4.40
39 40 1.002624 AAAAAGGAGATCGCCGCCA 60.003 52.632 10.07 0.00 37.17 5.69
40 41 0.744771 AGAAAAAGGAGATCGCCGCC 60.745 55.000 10.07 0.00 34.63 6.13
41 42 0.375106 CAGAAAAAGGAGATCGCCGC 59.625 55.000 10.07 0.00 0.00 6.53
42 43 0.375106 GCAGAAAAAGGAGATCGCCG 59.625 55.000 10.07 0.00 0.00 6.46
43 44 1.668237 GAGCAGAAAAAGGAGATCGCC 59.332 52.381 7.52 7.52 0.00 5.54
44 45 1.325943 CGAGCAGAAAAAGGAGATCGC 59.674 52.381 0.00 0.00 0.00 4.58
45 46 1.929836 CCGAGCAGAAAAAGGAGATCG 59.070 52.381 0.00 0.00 0.00 3.69
46 47 3.252974 TCCGAGCAGAAAAAGGAGATC 57.747 47.619 0.00 0.00 0.00 2.75
47 48 3.198635 TCATCCGAGCAGAAAAAGGAGAT 59.801 43.478 0.00 0.00 34.14 2.75
48 49 2.567169 TCATCCGAGCAGAAAAAGGAGA 59.433 45.455 0.00 0.00 34.14 3.71
49 50 2.977914 TCATCCGAGCAGAAAAAGGAG 58.022 47.619 0.00 0.00 34.14 3.69
50 51 3.634397 ATCATCCGAGCAGAAAAAGGA 57.366 42.857 0.00 0.00 35.24 3.36
51 52 4.320057 GCATATCATCCGAGCAGAAAAAGG 60.320 45.833 0.00 0.00 0.00 3.11
52 53 4.514441 AGCATATCATCCGAGCAGAAAAAG 59.486 41.667 0.00 0.00 0.00 2.27
53 54 4.274214 CAGCATATCATCCGAGCAGAAAAA 59.726 41.667 0.00 0.00 0.00 1.94
54 55 3.811497 CAGCATATCATCCGAGCAGAAAA 59.189 43.478 0.00 0.00 0.00 2.29
55 56 3.181462 ACAGCATATCATCCGAGCAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
56 57 2.366590 ACAGCATATCATCCGAGCAGAA 59.633 45.455 0.00 0.00 0.00 3.02
57 58 1.966354 ACAGCATATCATCCGAGCAGA 59.034 47.619 0.00 0.00 0.00 4.26
58 59 2.335752 GACAGCATATCATCCGAGCAG 58.664 52.381 0.00 0.00 0.00 4.24
59 60 1.001293 GGACAGCATATCATCCGAGCA 59.999 52.381 0.00 0.00 0.00 4.26
60 61 1.674221 GGGACAGCATATCATCCGAGC 60.674 57.143 0.00 0.00 31.48 5.03
61 62 1.620323 TGGGACAGCATATCATCCGAG 59.380 52.381 0.00 0.00 31.48 4.63
62 63 1.715785 TGGGACAGCATATCATCCGA 58.284 50.000 0.00 0.00 31.48 4.55
63 64 2.549064 TTGGGACAGCATATCATCCG 57.451 50.000 0.00 0.00 42.39 4.18
64 65 2.549754 CGTTTGGGACAGCATATCATCC 59.450 50.000 0.00 0.00 42.39 3.51
65 66 2.549754 CCGTTTGGGACAGCATATCATC 59.450 50.000 0.00 0.00 42.39 2.92
66 67 2.575532 CCGTTTGGGACAGCATATCAT 58.424 47.619 0.00 0.00 42.39 2.45
67 68 2.016604 GCCGTTTGGGACAGCATATCA 61.017 52.381 0.00 0.00 42.39 2.15
68 69 0.663153 GCCGTTTGGGACAGCATATC 59.337 55.000 0.00 0.00 42.39 1.63
69 70 0.255890 AGCCGTTTGGGACAGCATAT 59.744 50.000 0.00 0.00 42.39 1.78
70 71 0.037590 AAGCCGTTTGGGACAGCATA 59.962 50.000 0.00 0.00 42.39 3.14
71 72 0.827507 AAAGCCGTTTGGGACAGCAT 60.828 50.000 0.00 0.00 42.39 3.79
72 73 1.454847 AAAGCCGTTTGGGACAGCA 60.455 52.632 0.00 0.00 42.39 4.41
73 74 1.007387 CAAAGCCGTTTGGGACAGC 60.007 57.895 0.00 0.00 42.39 4.40
87 88 1.153469 GCCTCCTCGAGCTCCAAAG 60.153 63.158 6.99 3.29 0.00 2.77
88 89 2.660064 GGCCTCCTCGAGCTCCAAA 61.660 63.158 6.99 0.00 0.00 3.28
89 90 3.077556 GGCCTCCTCGAGCTCCAA 61.078 66.667 6.99 0.00 0.00 3.53
90 91 3.686098 ATGGCCTCCTCGAGCTCCA 62.686 63.158 6.99 10.89 36.08 3.86
91 92 2.841988 ATGGCCTCCTCGAGCTCC 60.842 66.667 6.99 5.28 0.00 4.70
92 93 2.420890 CATGGCCTCCTCGAGCTC 59.579 66.667 6.99 2.73 0.00 4.09
93 94 2.589610 TACCATGGCCTCCTCGAGCT 62.590 60.000 13.04 0.00 0.00 4.09
94 95 1.476007 ATACCATGGCCTCCTCGAGC 61.476 60.000 13.04 0.00 0.00 5.03
95 96 1.051812 AATACCATGGCCTCCTCGAG 58.948 55.000 13.04 5.13 0.00 4.04
96 97 0.758734 CAATACCATGGCCTCCTCGA 59.241 55.000 13.04 0.00 0.00 4.04
97 98 0.886490 GCAATACCATGGCCTCCTCG 60.886 60.000 13.04 0.00 0.00 4.63
98 99 0.886490 CGCAATACCATGGCCTCCTC 60.886 60.000 13.04 0.00 0.00 3.71
99 100 1.149174 CGCAATACCATGGCCTCCT 59.851 57.895 13.04 0.00 0.00 3.69
100 101 1.898574 CCGCAATACCATGGCCTCC 60.899 63.158 13.04 0.00 0.00 4.30
101 102 0.886490 CTCCGCAATACCATGGCCTC 60.886 60.000 13.04 0.00 0.00 4.70
102 103 1.149174 CTCCGCAATACCATGGCCT 59.851 57.895 13.04 0.00 0.00 5.19
103 104 0.886490 CTCTCCGCAATACCATGGCC 60.886 60.000 13.04 0.00 0.00 5.36
104 105 0.106708 TCTCTCCGCAATACCATGGC 59.893 55.000 13.04 0.00 0.00 4.40
105 106 2.487934 CTTCTCTCCGCAATACCATGG 58.512 52.381 11.19 11.19 0.00 3.66
106 107 2.103094 TCCTTCTCTCCGCAATACCATG 59.897 50.000 0.00 0.00 0.00 3.66
107 108 2.398588 TCCTTCTCTCCGCAATACCAT 58.601 47.619 0.00 0.00 0.00 3.55
108 109 1.860641 TCCTTCTCTCCGCAATACCA 58.139 50.000 0.00 0.00 0.00 3.25
109 110 2.483889 CCTTCCTTCTCTCCGCAATACC 60.484 54.545 0.00 0.00 0.00 2.73
110 111 2.483889 CCCTTCCTTCTCTCCGCAATAC 60.484 54.545 0.00 0.00 0.00 1.89
111 112 1.762957 CCCTTCCTTCTCTCCGCAATA 59.237 52.381 0.00 0.00 0.00 1.90
112 113 0.543749 CCCTTCCTTCTCTCCGCAAT 59.456 55.000 0.00 0.00 0.00 3.56
117 118 0.692756 CCCCTCCCTTCCTTCTCTCC 60.693 65.000 0.00 0.00 0.00 3.71
123 124 0.327964 CATCCTCCCCTCCCTTCCTT 60.328 60.000 0.00 0.00 0.00 3.36
134 135 1.002868 CCGCATCCATCATCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
142 143 1.016130 CGACCATAGCCGCATCCATC 61.016 60.000 0.00 0.00 0.00 3.51
174 175 2.472029 CCTCCCATCTTCCCGCTATAT 58.528 52.381 0.00 0.00 0.00 0.86
181 182 1.076705 GTTGCCCTCCCATCTTCCC 60.077 63.158 0.00 0.00 0.00 3.97
184 185 2.677228 CGGTTGCCCTCCCATCTT 59.323 61.111 0.00 0.00 0.00 2.40
191 192 2.438951 TTACGTCACCGGTTGCCCTC 62.439 60.000 2.97 0.00 38.78 4.30
203 204 1.301423 GCCCGCCATTAATTACGTCA 58.699 50.000 0.00 0.00 0.00 4.35
222 223 0.179100 ATTCATCCGTCTGTCTGCCG 60.179 55.000 0.00 0.00 0.00 5.69
225 226 1.208052 ACCCATTCATCCGTCTGTCTG 59.792 52.381 0.00 0.00 0.00 3.51
230 231 1.224592 GCCACCCATTCATCCGTCT 59.775 57.895 0.00 0.00 0.00 4.18
231 232 1.077787 TGCCACCCATTCATCCGTC 60.078 57.895 0.00 0.00 0.00 4.79
232 233 1.378514 GTGCCACCCATTCATCCGT 60.379 57.895 0.00 0.00 0.00 4.69
233 234 2.120909 GGTGCCACCCATTCATCCG 61.121 63.158 1.17 0.00 30.04 4.18
272 273 3.787146 GCATACATTTAACATGCGTGCGA 60.787 43.478 5.64 0.00 36.09 5.10
274 275 3.433709 TGCATACATTTAACATGCGTGC 58.566 40.909 5.64 14.06 46.37 5.34
278 279 4.097741 TCCACCTGCATACATTTAACATGC 59.902 41.667 0.00 0.00 44.23 4.06
279 280 5.581605 GTCCACCTGCATACATTTAACATG 58.418 41.667 0.00 0.00 0.00 3.21
298 299 3.367743 CGAGAACCCGTCCGTCCA 61.368 66.667 0.00 0.00 0.00 4.02
299 300 2.426122 AAACGAGAACCCGTCCGTCC 62.426 60.000 0.00 0.00 42.54 4.79
300 301 1.006922 AAACGAGAACCCGTCCGTC 60.007 57.895 0.00 0.00 42.54 4.79
307 308 1.539827 CCCATGTTCAAACGAGAACCC 59.460 52.381 14.20 0.00 45.62 4.11
310 311 1.243902 GCCCCATGTTCAAACGAGAA 58.756 50.000 0.00 0.00 0.00 2.87
312 313 0.958091 TTGCCCCATGTTCAAACGAG 59.042 50.000 0.00 0.00 0.00 4.18
314 315 0.673437 AGTTGCCCCATGTTCAAACG 59.327 50.000 0.00 0.00 0.00 3.60
323 324 2.284039 TGCATGCAGTTGCCCCAT 60.284 55.556 18.46 0.00 42.06 4.00
324 325 3.304721 GTGCATGCAGTTGCCCCA 61.305 61.111 23.41 0.00 42.06 4.96
325 326 4.073200 GGTGCATGCAGTTGCCCC 62.073 66.667 23.41 14.09 42.06 5.80
331 332 0.317770 CGTTTTTCGGTGCATGCAGT 60.318 50.000 23.41 0.00 35.71 4.40
333 334 0.317436 GTCGTTTTTCGGTGCATGCA 60.317 50.000 18.46 18.46 40.32 3.96
334 335 1.327292 CGTCGTTTTTCGGTGCATGC 61.327 55.000 11.82 11.82 40.32 4.06
343 344 3.018840 ATCGCCCGCGTCGTTTTTC 62.019 57.895 15.71 0.00 40.74 2.29
344 345 3.045492 ATCGCCCGCGTCGTTTTT 61.045 55.556 15.71 0.59 40.74 1.94
345 346 3.784412 CATCGCCCGCGTCGTTTT 61.784 61.111 15.71 2.62 40.74 2.43
357 358 2.589492 CGACGATTGGGAGCATCGC 61.589 63.158 3.52 0.00 46.17 4.58
360 361 2.369257 ATCGCGACGATTGGGAGCAT 62.369 55.000 12.93 0.00 44.59 3.79
361 362 3.076258 ATCGCGACGATTGGGAGCA 62.076 57.895 12.93 0.00 44.59 4.26
364 365 0.390603 AAACATCGCGACGATTGGGA 60.391 50.000 12.93 0.00 44.59 4.37
365 366 0.026285 GAAACATCGCGACGATTGGG 59.974 55.000 12.93 0.00 44.59 4.12
367 368 2.502280 TTGAAACATCGCGACGATTG 57.498 45.000 12.93 8.72 44.59 2.67
368 369 2.787723 GCATTGAAACATCGCGACGATT 60.788 45.455 12.93 3.31 44.59 3.34
371 372 0.857311 GGCATTGAAACATCGCGACG 60.857 55.000 12.93 5.44 0.00 5.12
372 373 0.447801 AGGCATTGAAACATCGCGAC 59.552 50.000 12.93 0.00 0.00 5.19
373 374 0.447406 CAGGCATTGAAACATCGCGA 59.553 50.000 13.09 13.09 0.00 5.87
374 375 0.447406 TCAGGCATTGAAACATCGCG 59.553 50.000 0.00 0.00 31.34 5.87
375 376 1.796617 GCTCAGGCATTGAAACATCGC 60.797 52.381 0.00 0.00 34.81 4.58
376 377 1.530441 CGCTCAGGCATTGAAACATCG 60.530 52.381 0.00 0.00 38.60 3.84
377 378 1.796617 GCGCTCAGGCATTGAAACATC 60.797 52.381 0.00 0.00 38.60 3.06
378 379 0.171903 GCGCTCAGGCATTGAAACAT 59.828 50.000 0.00 0.00 38.60 2.71
379 380 0.890542 AGCGCTCAGGCATTGAAACA 60.891 50.000 2.64 0.00 38.60 2.83
380 381 0.242017 AAGCGCTCAGGCATTGAAAC 59.758 50.000 12.06 0.00 38.60 2.78
381 382 0.961019 AAAGCGCTCAGGCATTGAAA 59.039 45.000 12.06 0.00 38.60 2.69
382 383 0.241749 CAAAGCGCTCAGGCATTGAA 59.758 50.000 12.06 0.00 38.60 2.69
383 384 0.606130 TCAAAGCGCTCAGGCATTGA 60.606 50.000 12.06 13.48 38.60 2.57
384 385 0.179171 CTCAAAGCGCTCAGGCATTG 60.179 55.000 12.06 10.97 38.60 2.82
385 386 0.321919 TCTCAAAGCGCTCAGGCATT 60.322 50.000 12.06 0.00 38.60 3.56
397 398 2.437343 GCGACGCGACCTCTCAAAG 61.437 63.158 15.93 0.00 0.00 2.77
399 400 3.324099 GAGCGACGCGACCTCTCAA 62.324 63.158 15.93 0.00 0.00 3.02
417 418 1.148310 CCGTATTAATGGCGGCTCAG 58.852 55.000 11.43 0.00 38.99 3.35
448 449 1.670406 GGTCAGCAGCACCACTCTG 60.670 63.158 0.00 0.00 33.63 3.35
449 450 1.414061 AAGGTCAGCAGCACCACTCT 61.414 55.000 4.77 0.00 36.23 3.24
453 454 0.823356 GGAAAAGGTCAGCAGCACCA 60.823 55.000 4.77 0.00 36.23 4.17
456 457 0.884704 GTCGGAAAAGGTCAGCAGCA 60.885 55.000 0.00 0.00 0.00 4.41
457 458 1.869690 GTCGGAAAAGGTCAGCAGC 59.130 57.895 0.00 0.00 0.00 5.25
487 488 3.361174 AAAAATCACCCACGCCCG 58.639 55.556 0.00 0.00 0.00 6.13
504 505 7.589958 TTTGACTGCCCTGACTAATTAAAAA 57.410 32.000 0.00 0.00 0.00 1.94
505 506 7.589958 TTTTGACTGCCCTGACTAATTAAAA 57.410 32.000 0.00 0.00 0.00 1.52
518 523 2.034053 TCACGTTCATTTTTGACTGCCC 59.966 45.455 0.00 0.00 0.00 5.36
520 525 3.690422 TGTCACGTTCATTTTTGACTGC 58.310 40.909 0.00 0.00 39.33 4.40
521 526 4.730042 CACTGTCACGTTCATTTTTGACTG 59.270 41.667 0.00 0.00 41.29 3.51
522 527 4.634004 TCACTGTCACGTTCATTTTTGACT 59.366 37.500 0.00 0.00 39.33 3.41
523 528 4.904116 TCACTGTCACGTTCATTTTTGAC 58.096 39.130 0.00 0.00 39.09 3.18
524 529 5.749596 ATCACTGTCACGTTCATTTTTGA 57.250 34.783 0.00 0.00 0.00 2.69
525 530 5.113975 CGAATCACTGTCACGTTCATTTTTG 59.886 40.000 0.00 0.00 0.00 2.44
526 531 5.007234 TCGAATCACTGTCACGTTCATTTTT 59.993 36.000 0.00 0.00 0.00 1.94
527 532 4.509970 TCGAATCACTGTCACGTTCATTTT 59.490 37.500 0.00 0.00 0.00 1.82
528 533 4.055360 TCGAATCACTGTCACGTTCATTT 58.945 39.130 0.00 0.00 0.00 2.32
529 534 3.428870 GTCGAATCACTGTCACGTTCATT 59.571 43.478 0.00 0.00 0.00 2.57
530 535 2.987149 GTCGAATCACTGTCACGTTCAT 59.013 45.455 0.00 0.00 0.00 2.57
531 536 2.390938 GTCGAATCACTGTCACGTTCA 58.609 47.619 0.00 0.00 0.00 3.18
532 537 1.382419 CGTCGAATCACTGTCACGTTC 59.618 52.381 0.00 0.00 0.00 3.95
533 538 1.405461 CGTCGAATCACTGTCACGTT 58.595 50.000 0.00 0.00 0.00 3.99
539 544 1.935300 GCAGTTCCGTCGAATCACTGT 60.935 52.381 13.72 0.00 0.00 3.55
557 562 1.745653 TGTGTTTTGTCATCCAACGCA 59.254 42.857 0.00 0.00 38.32 5.24
559 564 7.456684 TTTAAATGTGTTTTGTCATCCAACG 57.543 32.000 0.00 0.00 31.20 4.10
563 568 7.619161 GCACGATTTAAATGTGTTTTGTCATCC 60.619 37.037 21.34 7.00 36.04 3.51
564 569 7.219922 GCACGATTTAAATGTGTTTTGTCATC 58.780 34.615 21.34 7.45 36.04 2.92
568 573 4.442733 CCGCACGATTTAAATGTGTTTTGT 59.557 37.500 21.34 3.16 36.04 2.83
576 581 1.267832 CCGGACCGCACGATTTAAATG 60.268 52.381 8.86 1.06 0.00 2.32
579 584 0.737019 GTCCGGACCGCACGATTTAA 60.737 55.000 24.75 0.00 0.00 1.52
580 585 1.153784 GTCCGGACCGCACGATTTA 60.154 57.895 24.75 0.00 0.00 1.40
582 587 4.789075 CGTCCGGACCGCACGATT 62.789 66.667 25.87 0.00 35.49 3.34
593 598 2.806856 CGACTCTCGTACCGTCCGG 61.807 68.421 3.76 3.76 36.84 5.14
599 604 0.100146 ATTTCGCCGACTCTCGTACC 59.900 55.000 0.00 0.00 38.40 3.34
621 637 4.380531 TCCGGAGCAATGCTATTCTTAAG 58.619 43.478 8.12 0.00 39.88 1.85
640 657 1.131126 GACAACCACATCATTGCTCCG 59.869 52.381 0.00 0.00 0.00 4.63
690 709 1.330521 AGCAGCGCGGTACAAATTATG 59.669 47.619 11.92 0.00 0.00 1.90
707 726 3.185594 CGTTGTAGTTTCCAATTCGAGCA 59.814 43.478 0.00 0.00 0.00 4.26
750 770 3.070018 ACAGTAGCTAGCTGCAACTTTG 58.930 45.455 30.79 22.21 45.94 2.77
808 828 2.176273 CAGCGTATGCACAGGAGGC 61.176 63.158 10.11 0.00 46.23 4.70
845 865 3.486875 GGAGCACGTACCAATAATGCAAC 60.487 47.826 0.00 0.00 38.79 4.17
926 949 3.114616 GATGAGTGCGTGCGTGCT 61.115 61.111 1.52 0.00 35.36 4.40
927 950 3.114616 AGATGAGTGCGTGCGTGC 61.115 61.111 0.00 0.00 0.00 5.34
928 951 2.774126 CAGATGAGTGCGTGCGTG 59.226 61.111 0.00 0.00 0.00 5.34
929 952 3.114616 GCAGATGAGTGCGTGCGT 61.115 61.111 0.00 0.00 32.74 5.24
1329 1372 3.741476 CAAGCTTGACTGGCCGGC 61.741 66.667 22.31 21.18 0.00 6.13
1364 1407 3.937079 TGATCGATCACACGTAGTACAGT 59.063 43.478 23.99 0.00 41.61 3.55
1366 1409 5.494632 AATGATCGATCACACGTAGTACA 57.505 39.130 29.49 3.82 38.44 2.90
1367 1410 6.791299 GTCTAATGATCGATCACACGTAGTAC 59.209 42.308 29.49 19.58 38.44 2.73
1369 1412 5.296035 TGTCTAATGATCGATCACACGTAGT 59.704 40.000 29.49 9.89 40.03 2.73
1370 1413 5.748592 TGTCTAATGATCGATCACACGTAG 58.251 41.667 29.49 23.96 40.03 3.51
1398 1494 3.673746 ACAACAAATGACACACAGACG 57.326 42.857 0.00 0.00 0.00 4.18
1401 1497 4.201773 ACACGTACAACAAATGACACACAG 60.202 41.667 0.00 0.00 0.00 3.66
1402 1498 3.685272 ACACGTACAACAAATGACACACA 59.315 39.130 0.00 0.00 0.00 3.72
1403 1499 4.025750 CACACGTACAACAAATGACACAC 58.974 43.478 0.00 0.00 0.00 3.82
1404 1500 3.933332 TCACACGTACAACAAATGACACA 59.067 39.130 0.00 0.00 0.00 3.72
1405 1501 4.523853 TCACACGTACAACAAATGACAC 57.476 40.909 0.00 0.00 0.00 3.67
1406 1502 5.294552 TCAATCACACGTACAACAAATGACA 59.705 36.000 0.00 0.00 0.00 3.58
1407 1503 5.743467 TCAATCACACGTACAACAAATGAC 58.257 37.500 0.00 0.00 0.00 3.06
1408 1504 5.993106 TCAATCACACGTACAACAAATGA 57.007 34.783 0.00 0.00 0.00 2.57
1409 1505 5.504409 CGATCAATCACACGTACAACAAATG 59.496 40.000 0.00 0.00 0.00 2.32
1410 1506 5.178623 ACGATCAATCACACGTACAACAAAT 59.821 36.000 0.00 0.00 37.22 2.32
1411 1507 4.508492 ACGATCAATCACACGTACAACAAA 59.492 37.500 0.00 0.00 37.22 2.83
1412 1508 4.052608 ACGATCAATCACACGTACAACAA 58.947 39.130 0.00 0.00 37.22 2.83
1413 1509 3.644823 ACGATCAATCACACGTACAACA 58.355 40.909 0.00 0.00 37.22 3.33
1414 1510 4.084745 ACAACGATCAATCACACGTACAAC 60.085 41.667 0.00 0.00 38.00 3.32
1415 1511 4.052608 ACAACGATCAATCACACGTACAA 58.947 39.130 0.00 0.00 38.00 2.41
1416 1512 3.427193 CACAACGATCAATCACACGTACA 59.573 43.478 0.00 0.00 38.00 2.90
1417 1513 3.720920 GCACAACGATCAATCACACGTAC 60.721 47.826 0.00 0.00 38.00 3.67
1418 1514 2.410392 GCACAACGATCAATCACACGTA 59.590 45.455 0.00 0.00 38.00 3.57
1419 1515 1.194547 GCACAACGATCAATCACACGT 59.805 47.619 0.00 0.00 40.64 4.49
1420 1516 1.869503 GCACAACGATCAATCACACG 58.130 50.000 0.00 0.00 0.00 4.49
1435 1531 1.090728 ACATTTGTGTCACACGCACA 58.909 45.000 4.80 0.00 44.05 4.57
1436 1532 3.225548 CATACATTTGTGTCACACGCAC 58.774 45.455 4.80 0.00 38.47 5.34
1437 1533 2.350293 GCATACATTTGTGTCACACGCA 60.350 45.455 4.80 0.00 37.14 5.24
1438 1534 2.241722 GCATACATTTGTGTCACACGC 58.758 47.619 4.80 0.00 37.14 5.34
1439 1535 2.483877 AGGCATACATTTGTGTCACACG 59.516 45.455 4.80 0.00 37.14 4.49
1440 1536 4.229096 CAAGGCATACATTTGTGTCACAC 58.771 43.478 4.80 0.00 34.56 3.82
1441 1537 3.888323 ACAAGGCATACATTTGTGTCACA 59.112 39.130 0.18 0.18 34.04 3.58
1442 1538 4.503741 ACAAGGCATACATTTGTGTCAC 57.496 40.909 0.00 0.00 34.04 3.67
1443 1539 5.181056 CAGTACAAGGCATACATTTGTGTCA 59.819 40.000 0.00 0.00 36.52 3.58
1444 1540 5.181245 ACAGTACAAGGCATACATTTGTGTC 59.819 40.000 0.00 0.00 36.52 3.67
1445 1541 5.070001 ACAGTACAAGGCATACATTTGTGT 58.930 37.500 0.00 0.00 36.52 3.72
1446 1542 5.627499 ACAGTACAAGGCATACATTTGTG 57.373 39.130 0.00 0.00 36.52 3.33
1491 1588 2.604046 AGCCACACGATTAGCTTAGG 57.396 50.000 0.00 0.00 29.27 2.69
1494 1591 3.623060 CACATAAGCCACACGATTAGCTT 59.377 43.478 0.00 11.07 46.70 3.74
1496 1593 2.936498 ACACATAAGCCACACGATTAGC 59.064 45.455 0.00 0.00 0.00 3.09
1498 1595 3.930229 GACACACATAAGCCACACGATTA 59.070 43.478 0.00 0.00 0.00 1.75
1503 1600 1.165270 GGGACACACATAAGCCACAC 58.835 55.000 0.00 0.00 0.00 3.82
1504 1601 0.321210 CGGGACACACATAAGCCACA 60.321 55.000 0.00 0.00 0.00 4.17
1505 1602 0.321298 ACGGGACACACATAAGCCAC 60.321 55.000 0.00 0.00 0.00 5.01
1506 1603 0.398696 AACGGGACACACATAAGCCA 59.601 50.000 0.00 0.00 0.00 4.75
1507 1604 1.530323 AAACGGGACACACATAAGCC 58.470 50.000 0.00 0.00 0.00 4.35
1508 1605 3.243267 ACAAAAACGGGACACACATAAGC 60.243 43.478 0.00 0.00 0.00 3.09
1509 1606 4.274950 AGACAAAAACGGGACACACATAAG 59.725 41.667 0.00 0.00 0.00 1.73
1510 1607 4.200874 AGACAAAAACGGGACACACATAA 58.799 39.130 0.00 0.00 0.00 1.90
1511 1608 3.811083 AGACAAAAACGGGACACACATA 58.189 40.909 0.00 0.00 0.00 2.29
1512 1609 2.650322 AGACAAAAACGGGACACACAT 58.350 42.857 0.00 0.00 0.00 3.21
1513 1610 2.116827 AGACAAAAACGGGACACACA 57.883 45.000 0.00 0.00 0.00 3.72
1514 1611 3.497297 AAAGACAAAAACGGGACACAC 57.503 42.857 0.00 0.00 0.00 3.82
1515 1612 3.426426 CGAAAAGACAAAAACGGGACACA 60.426 43.478 0.00 0.00 0.00 3.72
1516 1613 3.103007 CGAAAAGACAAAAACGGGACAC 58.897 45.455 0.00 0.00 0.00 3.67
1517 1614 2.478200 GCGAAAAGACAAAAACGGGACA 60.478 45.455 0.00 0.00 0.00 4.02
1518 1615 2.114056 GCGAAAAGACAAAAACGGGAC 58.886 47.619 0.00 0.00 0.00 4.46
1519 1616 2.018515 AGCGAAAAGACAAAAACGGGA 58.981 42.857 0.00 0.00 0.00 5.14
1520 1617 2.485266 AGCGAAAAGACAAAAACGGG 57.515 45.000 0.00 0.00 0.00 5.28
1521 1618 2.971261 GCTAGCGAAAAGACAAAAACGG 59.029 45.455 0.00 0.00 0.00 4.44
1522 1619 2.971261 GGCTAGCGAAAAGACAAAAACG 59.029 45.455 9.00 0.00 0.00 3.60
1523 1620 3.729217 GTGGCTAGCGAAAAGACAAAAAC 59.271 43.478 9.00 0.00 32.59 2.43
1524 1621 3.243267 GGTGGCTAGCGAAAAGACAAAAA 60.243 43.478 9.00 0.00 32.59 1.94
1525 1622 2.292292 GGTGGCTAGCGAAAAGACAAAA 59.708 45.455 9.00 0.00 32.59 2.44
1526 1623 1.877443 GGTGGCTAGCGAAAAGACAAA 59.123 47.619 9.00 0.00 32.59 2.83
1527 1624 1.519408 GGTGGCTAGCGAAAAGACAA 58.481 50.000 9.00 0.00 32.59 3.18
1528 1625 3.226884 GGTGGCTAGCGAAAAGACA 57.773 52.632 9.00 0.00 0.00 3.41
1537 1634 3.498777 GGAATCTTAATTCGGTGGCTAGC 59.501 47.826 6.04 6.04 41.94 3.42
1538 1635 4.703897 TGGAATCTTAATTCGGTGGCTAG 58.296 43.478 0.00 0.00 41.94 3.42
1539 1636 4.444306 CCTGGAATCTTAATTCGGTGGCTA 60.444 45.833 0.00 0.00 41.94 3.93
1540 1637 3.545703 CTGGAATCTTAATTCGGTGGCT 58.454 45.455 0.00 0.00 41.94 4.75
1541 1638 2.618709 CCTGGAATCTTAATTCGGTGGC 59.381 50.000 0.00 0.00 41.94 5.01
1542 1639 4.150897 TCCTGGAATCTTAATTCGGTGG 57.849 45.455 0.00 0.00 41.94 4.61
1543 1640 5.506317 GCAATCCTGGAATCTTAATTCGGTG 60.506 44.000 0.00 0.00 41.94 4.94
1544 1641 4.580580 GCAATCCTGGAATCTTAATTCGGT 59.419 41.667 0.00 0.00 41.94 4.69
1545 1642 4.022849 GGCAATCCTGGAATCTTAATTCGG 60.023 45.833 0.00 0.00 41.94 4.30
1546 1643 4.580167 TGGCAATCCTGGAATCTTAATTCG 59.420 41.667 0.00 0.00 41.94 3.34
1547 1644 5.595952 ACTGGCAATCCTGGAATCTTAATTC 59.404 40.000 0.00 0.00 40.56 2.17
1548 1645 5.361857 CACTGGCAATCCTGGAATCTTAATT 59.638 40.000 0.00 0.00 35.80 1.40
1549 1646 4.891756 CACTGGCAATCCTGGAATCTTAAT 59.108 41.667 0.00 0.00 35.80 1.40
1550 1647 4.263905 ACACTGGCAATCCTGGAATCTTAA 60.264 41.667 0.00 0.00 35.80 1.85
1551 1648 3.266772 ACACTGGCAATCCTGGAATCTTA 59.733 43.478 0.00 0.00 35.80 2.10
1552 1649 2.042162 ACACTGGCAATCCTGGAATCTT 59.958 45.455 0.00 0.00 35.80 2.40
1553 1650 1.637553 ACACTGGCAATCCTGGAATCT 59.362 47.619 0.00 0.00 35.80 2.40
1554 1651 1.747355 CACACTGGCAATCCTGGAATC 59.253 52.381 0.00 0.00 35.80 2.52
1555 1652 1.076024 ACACACTGGCAATCCTGGAAT 59.924 47.619 0.00 0.00 35.80 3.01
1556 1653 0.478072 ACACACTGGCAATCCTGGAA 59.522 50.000 0.00 0.00 35.80 3.53
1557 1654 0.250858 CACACACTGGCAATCCTGGA 60.251 55.000 0.00 0.00 35.80 3.86
1558 1655 1.870055 GCACACACTGGCAATCCTGG 61.870 60.000 0.00 0.00 35.80 4.45
1559 1656 0.892358 AGCACACACTGGCAATCCTG 60.892 55.000 0.00 0.00 37.34 3.86
1560 1657 0.692476 TAGCACACACTGGCAATCCT 59.308 50.000 0.00 0.00 0.00 3.24
1561 1658 0.804989 GTAGCACACACTGGCAATCC 59.195 55.000 0.00 0.00 0.00 3.01
1562 1659 1.734465 GAGTAGCACACACTGGCAATC 59.266 52.381 0.00 0.00 0.00 2.67
1563 1660 1.611673 GGAGTAGCACACACTGGCAAT 60.612 52.381 0.00 0.00 0.00 3.56
1564 1661 0.250295 GGAGTAGCACACACTGGCAA 60.250 55.000 0.00 0.00 0.00 4.52
1565 1662 1.121407 AGGAGTAGCACACACTGGCA 61.121 55.000 0.00 0.00 0.00 4.92
1566 1663 0.895530 TAGGAGTAGCACACACTGGC 59.104 55.000 0.00 0.00 0.00 4.85
1567 1664 3.195610 TCAATAGGAGTAGCACACACTGG 59.804 47.826 0.00 0.00 0.00 4.00
1568 1665 4.456280 TCAATAGGAGTAGCACACACTG 57.544 45.455 0.00 0.00 0.00 3.66
1569 1666 5.423015 CAATCAATAGGAGTAGCACACACT 58.577 41.667 0.00 0.00 0.00 3.55
1570 1667 4.572389 CCAATCAATAGGAGTAGCACACAC 59.428 45.833 0.00 0.00 0.00 3.82
1571 1668 4.469586 TCCAATCAATAGGAGTAGCACACA 59.530 41.667 0.00 0.00 0.00 3.72
1572 1669 5.023533 TCCAATCAATAGGAGTAGCACAC 57.976 43.478 0.00 0.00 0.00 3.82
1573 1670 5.282055 CTCCAATCAATAGGAGTAGCACA 57.718 43.478 0.00 0.00 45.08 4.57
1581 1678 2.398588 ACGGAGCTCCAATCAATAGGA 58.601 47.619 31.67 0.00 35.14 2.94
1582 1679 2.918712 ACGGAGCTCCAATCAATAGG 57.081 50.000 31.67 14.57 35.14 2.57
1583 1680 5.201713 TCTTACGGAGCTCCAATCAATAG 57.798 43.478 31.67 15.29 35.14 1.73
1584 1681 4.649674 ACTCTTACGGAGCTCCAATCAATA 59.350 41.667 31.67 11.01 45.48 1.90
1585 1682 3.452627 ACTCTTACGGAGCTCCAATCAAT 59.547 43.478 31.67 11.98 45.48 2.57
1586 1683 2.832129 ACTCTTACGGAGCTCCAATCAA 59.168 45.455 31.67 17.24 45.48 2.57
1587 1684 2.457598 ACTCTTACGGAGCTCCAATCA 58.542 47.619 31.67 11.74 45.48 2.57
1588 1685 3.633065 ACTACTCTTACGGAGCTCCAATC 59.367 47.826 31.67 5.56 45.48 2.67
1589 1686 3.633418 ACTACTCTTACGGAGCTCCAAT 58.367 45.455 31.67 21.17 45.48 3.16
1590 1687 3.083122 ACTACTCTTACGGAGCTCCAA 57.917 47.619 31.67 18.38 45.48 3.53
1591 1688 2.803030 ACTACTCTTACGGAGCTCCA 57.197 50.000 31.67 11.42 45.48 3.86
1592 1689 3.807553 AGTACTACTCTTACGGAGCTCC 58.192 50.000 23.79 23.79 45.48 4.70
1593 1690 8.776376 ATATTAGTACTACTCTTACGGAGCTC 57.224 38.462 4.71 4.71 45.48 4.09
1616 1713 9.589111 TGTAACTTGTTATGAGCACGAATAATA 57.411 29.630 0.00 0.00 0.00 0.98
1617 1714 8.388103 GTGTAACTTGTTATGAGCACGAATAAT 58.612 33.333 0.00 0.00 0.00 1.28
1618 1715 7.735500 GTGTAACTTGTTATGAGCACGAATAA 58.264 34.615 0.00 0.00 0.00 1.40
1619 1716 7.285783 GTGTAACTTGTTATGAGCACGAATA 57.714 36.000 0.00 0.00 0.00 1.75
1620 1717 6.165659 GTGTAACTTGTTATGAGCACGAAT 57.834 37.500 0.00 0.00 0.00 3.34
1621 1718 5.585500 GTGTAACTTGTTATGAGCACGAA 57.415 39.130 0.00 0.00 0.00 3.85
1637 1734 9.391006 TGGATATTAGGTCAAAATCAGTGTAAC 57.609 33.333 0.00 0.00 0.00 2.50
1638 1735 9.967451 TTGGATATTAGGTCAAAATCAGTGTAA 57.033 29.630 0.00 0.00 0.00 2.41
1639 1736 9.613428 CTTGGATATTAGGTCAAAATCAGTGTA 57.387 33.333 0.00 0.00 0.00 2.90
1640 1737 8.328758 TCTTGGATATTAGGTCAAAATCAGTGT 58.671 33.333 0.00 0.00 0.00 3.55
1641 1738 8.737168 TCTTGGATATTAGGTCAAAATCAGTG 57.263 34.615 0.00 0.00 0.00 3.66
1642 1739 9.753674 TTTCTTGGATATTAGGTCAAAATCAGT 57.246 29.630 0.00 0.00 0.00 3.41
1661 1758 9.918630 ACAAGAGATTTCATTGTATTTTCTTGG 57.081 29.630 15.94 5.65 41.82 3.61
1663 1760 9.918630 CCACAAGAGATTTCATTGTATTTTCTT 57.081 29.630 0.00 0.00 35.47 2.52
1664 1761 9.082313 ACCACAAGAGATTTCATTGTATTTTCT 57.918 29.630 0.00 0.00 35.47 2.52
1668 1765 9.685276 TGATACCACAAGAGATTTCATTGTATT 57.315 29.630 0.00 0.00 35.47 1.89
1669 1766 9.685276 TTGATACCACAAGAGATTTCATTGTAT 57.315 29.630 0.00 0.00 35.47 2.29
1670 1767 9.685276 ATTGATACCACAAGAGATTTCATTGTA 57.315 29.630 0.00 0.00 35.47 2.41
1671 1768 8.585471 ATTGATACCACAAGAGATTTCATTGT 57.415 30.769 0.00 0.00 37.64 2.71
1672 1769 8.900781 AGATTGATACCACAAGAGATTTCATTG 58.099 33.333 0.00 0.00 33.22 2.82
1673 1770 9.118300 GAGATTGATACCACAAGAGATTTCATT 57.882 33.333 0.00 0.00 33.22 2.57
1674 1771 8.492782 AGAGATTGATACCACAAGAGATTTCAT 58.507 33.333 0.00 0.00 33.22 2.57
1675 1772 7.767659 CAGAGATTGATACCACAAGAGATTTCA 59.232 37.037 0.00 0.00 33.22 2.69
1676 1773 7.254727 GCAGAGATTGATACCACAAGAGATTTC 60.255 40.741 0.00 0.00 33.22 2.17
1677 1774 6.541641 GCAGAGATTGATACCACAAGAGATTT 59.458 38.462 0.00 0.00 33.22 2.17
1678 1775 6.054295 GCAGAGATTGATACCACAAGAGATT 58.946 40.000 0.00 0.00 33.22 2.40
1679 1776 5.366186 AGCAGAGATTGATACCACAAGAGAT 59.634 40.000 0.00 0.00 33.22 2.75
1680 1777 4.713814 AGCAGAGATTGATACCACAAGAGA 59.286 41.667 0.00 0.00 33.22 3.10
1681 1778 5.021033 AGCAGAGATTGATACCACAAGAG 57.979 43.478 0.00 0.00 33.22 2.85
1682 1779 4.467438 TGAGCAGAGATTGATACCACAAGA 59.533 41.667 0.00 0.00 33.22 3.02
1683 1780 4.763073 TGAGCAGAGATTGATACCACAAG 58.237 43.478 0.00 0.00 33.22 3.16
1684 1781 4.824479 TGAGCAGAGATTGATACCACAA 57.176 40.909 0.00 0.00 0.00 3.33
1685 1782 4.824479 TTGAGCAGAGATTGATACCACA 57.176 40.909 0.00 0.00 0.00 4.17
1686 1783 4.574013 CCTTTGAGCAGAGATTGATACCAC 59.426 45.833 0.00 0.00 0.00 4.16
1687 1784 4.471025 TCCTTTGAGCAGAGATTGATACCA 59.529 41.667 0.00 0.00 0.00 3.25
1728 1825 7.613411 GCTCCAATCCAATTATAGCCTCTTTAT 59.387 37.037 0.00 0.00 0.00 1.40
1739 1836 6.549433 ACATTGTTGCTCCAATCCAATTAT 57.451 33.333 0.00 0.00 32.81 1.28
1748 1845 3.023119 AGTGACAACATTGTTGCTCCAA 58.977 40.909 25.60 7.56 42.43 3.53
1845 1945 3.492656 CCCAAGTACGTTCATCGATCCAT 60.493 47.826 0.00 0.00 42.86 3.41
1847 1947 2.470821 CCCAAGTACGTTCATCGATCC 58.529 52.381 0.00 0.00 42.86 3.36
1881 1982 1.890894 GACGGCCTGCACTTCTAGA 59.109 57.895 0.00 0.00 0.00 2.43
1934 2037 5.014544 TCTGATTCTTTCTGGAGGTGGAATT 59.985 40.000 0.00 0.00 0.00 2.17
1938 2041 3.604582 GTCTGATTCTTTCTGGAGGTGG 58.395 50.000 0.00 0.00 0.00 4.61
1947 2050 8.084684 AGCTTTTTATGTTGGTCTGATTCTTTC 58.915 33.333 0.00 0.00 0.00 2.62
2008 2113 1.064946 CTGTCCTCGCAGATCCGAC 59.935 63.158 0.00 0.00 38.70 4.79
2106 2214 6.951256 TCAAGACATCTATGTTCTTCGTTG 57.049 37.500 0.00 0.00 41.95 4.10
2122 2230 3.560025 GGGAGCCTCAAATCTTCAAGACA 60.560 47.826 0.00 0.00 0.00 3.41
2194 2304 1.963338 GATAGCCGCCACCATCTGC 60.963 63.158 0.00 0.00 0.00 4.26
2210 2322 9.538508 GATTTATGCTTCAATTTAGCCTTTGAT 57.461 29.630 6.81 0.00 37.85 2.57
2211 2323 8.530311 TGATTTATGCTTCAATTTAGCCTTTGA 58.470 29.630 6.81 0.00 37.85 2.69
2212 2324 8.706492 TGATTTATGCTTCAATTTAGCCTTTG 57.294 30.769 6.81 0.00 37.85 2.77
2213 2325 7.983484 CCTGATTTATGCTTCAATTTAGCCTTT 59.017 33.333 6.81 0.00 37.85 3.11
2214 2326 7.124750 ACCTGATTTATGCTTCAATTTAGCCTT 59.875 33.333 6.81 0.00 37.85 4.35
2215 2327 6.608808 ACCTGATTTATGCTTCAATTTAGCCT 59.391 34.615 6.81 0.94 37.85 4.58
2216 2328 6.809869 ACCTGATTTATGCTTCAATTTAGCC 58.190 36.000 6.81 0.00 37.85 3.93
2217 2329 7.223387 CCAACCTGATTTATGCTTCAATTTAGC 59.777 37.037 2.96 2.96 39.10 3.09
2218 2330 7.707893 CCCAACCTGATTTATGCTTCAATTTAG 59.292 37.037 0.00 0.00 0.00 1.85
2219 2331 7.398618 TCCCAACCTGATTTATGCTTCAATTTA 59.601 33.333 0.00 0.00 0.00 1.40
2220 2332 6.213195 TCCCAACCTGATTTATGCTTCAATTT 59.787 34.615 0.00 0.00 0.00 1.82
2221 2333 5.721000 TCCCAACCTGATTTATGCTTCAATT 59.279 36.000 0.00 0.00 0.00 2.32
2222 2334 5.271598 TCCCAACCTGATTTATGCTTCAAT 58.728 37.500 0.00 0.00 0.00 2.57
2223 2335 4.671831 TCCCAACCTGATTTATGCTTCAA 58.328 39.130 0.00 0.00 0.00 2.69
2224 2336 4.314522 TCCCAACCTGATTTATGCTTCA 57.685 40.909 0.00 0.00 0.00 3.02
2225 2337 4.098501 CCTTCCCAACCTGATTTATGCTTC 59.901 45.833 0.00 0.00 0.00 3.86
2226 2338 4.026052 CCTTCCCAACCTGATTTATGCTT 58.974 43.478 0.00 0.00 0.00 3.91
2227 2339 3.269381 TCCTTCCCAACCTGATTTATGCT 59.731 43.478 0.00 0.00 0.00 3.79
2228 2340 3.381590 GTCCTTCCCAACCTGATTTATGC 59.618 47.826 0.00 0.00 0.00 3.14
2229 2341 4.860022 AGTCCTTCCCAACCTGATTTATG 58.140 43.478 0.00 0.00 0.00 1.90
2230 2342 5.536497 AAGTCCTTCCCAACCTGATTTAT 57.464 39.130 0.00 0.00 0.00 1.40
2231 2343 5.280830 GGTAAGTCCTTCCCAACCTGATTTA 60.281 44.000 0.00 0.00 0.00 1.40
2232 2344 3.903530 AAGTCCTTCCCAACCTGATTT 57.096 42.857 0.00 0.00 0.00 2.17
2233 2345 3.010250 GGTAAGTCCTTCCCAACCTGATT 59.990 47.826 0.00 0.00 0.00 2.57
2234 2346 2.576648 GGTAAGTCCTTCCCAACCTGAT 59.423 50.000 0.00 0.00 0.00 2.90
2235 2347 1.982958 GGTAAGTCCTTCCCAACCTGA 59.017 52.381 0.00 0.00 0.00 3.86
2236 2348 1.338769 CGGTAAGTCCTTCCCAACCTG 60.339 57.143 0.00 0.00 0.00 4.00
2237 2349 0.981943 CGGTAAGTCCTTCCCAACCT 59.018 55.000 0.00 0.00 0.00 3.50
2238 2350 0.675837 GCGGTAAGTCCTTCCCAACC 60.676 60.000 0.00 0.00 0.00 3.77
2239 2351 0.675837 GGCGGTAAGTCCTTCCCAAC 60.676 60.000 0.00 0.00 0.00 3.77
2240 2352 1.681076 GGCGGTAAGTCCTTCCCAA 59.319 57.895 0.00 0.00 0.00 4.12
2241 2353 2.652095 CGGCGGTAAGTCCTTCCCA 61.652 63.158 0.00 0.00 0.00 4.37
2242 2354 2.186125 CGGCGGTAAGTCCTTCCC 59.814 66.667 0.00 0.00 0.00 3.97
2243 2355 1.153686 GACGGCGGTAAGTCCTTCC 60.154 63.158 13.24 0.00 0.00 3.46
2244 2356 1.515736 CGACGGCGGTAAGTCCTTC 60.516 63.158 13.24 0.00 34.10 3.46
2245 2357 1.318158 ATCGACGGCGGTAAGTCCTT 61.318 55.000 12.58 0.00 38.28 3.36
2246 2358 1.751927 ATCGACGGCGGTAAGTCCT 60.752 57.895 12.58 0.00 38.28 3.85
2247 2359 1.588139 CATCGACGGCGGTAAGTCC 60.588 63.158 12.58 0.00 38.28 3.85
2248 2360 0.179156 TTCATCGACGGCGGTAAGTC 60.179 55.000 12.58 0.00 38.28 3.01
2249 2361 0.179145 CTTCATCGACGGCGGTAAGT 60.179 55.000 12.58 0.00 38.28 2.24
2250 2362 0.179145 ACTTCATCGACGGCGGTAAG 60.179 55.000 12.58 14.69 38.28 2.34
2251 2363 0.457166 CACTTCATCGACGGCGGTAA 60.457 55.000 12.58 1.38 38.28 2.85
2252 2364 1.138036 CACTTCATCGACGGCGGTA 59.862 57.895 12.58 0.00 38.28 4.02
2253 2365 2.126071 CACTTCATCGACGGCGGT 60.126 61.111 12.58 0.00 38.28 5.68
2254 2366 2.885644 CCACTTCATCGACGGCGG 60.886 66.667 12.58 0.00 38.28 6.13
2255 2367 2.126071 ACCACTTCATCGACGGCG 60.126 61.111 2.87 2.87 39.35 6.46
2256 2368 0.460284 ATCACCACTTCATCGACGGC 60.460 55.000 0.00 0.00 0.00 5.68
2257 2369 1.135112 TCATCACCACTTCATCGACGG 60.135 52.381 0.00 0.00 0.00 4.79
2258 2370 2.278026 TCATCACCACTTCATCGACG 57.722 50.000 0.00 0.00 0.00 5.12
2259 2371 2.349886 GCTTCATCACCACTTCATCGAC 59.650 50.000 0.00 0.00 0.00 4.20
2260 2372 2.621338 GCTTCATCACCACTTCATCGA 58.379 47.619 0.00 0.00 0.00 3.59
2261 2373 1.325640 CGCTTCATCACCACTTCATCG 59.674 52.381 0.00 0.00 0.00 3.84
2262 2374 1.063174 GCGCTTCATCACCACTTCATC 59.937 52.381 0.00 0.00 0.00 2.92
2263 2375 1.089920 GCGCTTCATCACCACTTCAT 58.910 50.000 0.00 0.00 0.00 2.57
2264 2376 0.035317 AGCGCTTCATCACCACTTCA 59.965 50.000 2.64 0.00 0.00 3.02
2265 2377 1.929836 CTAGCGCTTCATCACCACTTC 59.070 52.381 18.68 0.00 0.00 3.01
2266 2378 1.406069 CCTAGCGCTTCATCACCACTT 60.406 52.381 18.68 0.00 0.00 3.16
2267 2379 0.176680 CCTAGCGCTTCATCACCACT 59.823 55.000 18.68 0.00 0.00 4.00
2268 2380 0.811616 CCCTAGCGCTTCATCACCAC 60.812 60.000 18.68 0.00 0.00 4.16
2269 2381 0.975556 TCCCTAGCGCTTCATCACCA 60.976 55.000 18.68 0.00 0.00 4.17
2270 2382 0.394565 ATCCCTAGCGCTTCATCACC 59.605 55.000 18.68 0.00 0.00 4.02
2271 2383 2.297597 ACTATCCCTAGCGCTTCATCAC 59.702 50.000 18.68 0.00 0.00 3.06
2272 2384 2.558795 GACTATCCCTAGCGCTTCATCA 59.441 50.000 18.68 0.00 0.00 3.07
2273 2385 2.414824 CGACTATCCCTAGCGCTTCATC 60.415 54.545 18.68 1.61 0.00 2.92
2274 2386 1.542030 CGACTATCCCTAGCGCTTCAT 59.458 52.381 18.68 5.22 0.00 2.57
2275 2387 0.952280 CGACTATCCCTAGCGCTTCA 59.048 55.000 18.68 0.00 0.00 3.02
2276 2388 0.953003 ACGACTATCCCTAGCGCTTC 59.047 55.000 18.68 2.72 31.77 3.86
2277 2389 0.953003 GACGACTATCCCTAGCGCTT 59.047 55.000 18.68 0.00 31.77 4.68
2278 2390 1.229315 CGACGACTATCCCTAGCGCT 61.229 60.000 17.26 17.26 31.77 5.92
2279 2391 1.207085 CGACGACTATCCCTAGCGC 59.793 63.158 0.00 0.00 31.77 5.92
2280 2392 1.207085 GCGACGACTATCCCTAGCG 59.793 63.158 0.00 0.00 33.54 4.26
2281 2393 1.580437 GGCGACGACTATCCCTAGC 59.420 63.158 0.00 0.00 0.00 3.42
2294 2406 2.431942 ACAACGATCACCGGCGAC 60.432 61.111 9.30 0.00 43.93 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.