>input_sequence_84216
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---------------------------------------------------------------------ATGGCGGCGGG
CGGCGTGTGGGTGTTCCGGAAGGACGGGGTGATGGAGCTGGAGCGGGAGGCGTCGAGCCGGAAGGCGCTGGTGTACGTGC
CGGCGAACGAGACGATGCGCTCCCTGCGGGCGCTGGAGCGGCGGCTGGGGTCGCTGGGATGGGAGCGCTACTACGAGGAC
CGCGCCGTCGTGCAGCTCCACCGCCGCGACGGCAGCCTCGACCTCATCTCGCTCCCGCGAGACTTCGCGCGGTTCCGCTC
CGTCCACATGTACGACGTCGTCGTCAAGAACCGAGGCCACTTCAAGGTCGTCGACCTCTAA-------------------
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>chr4D_1_TraesCS4D01G306700
CGGCCTCTGTCGGCCTGCCGACCTGCCAGCCGACTGCAATGGCGGCGATCTCCTTTTTCTGCTCGGATGATATGCTGTCC
CAAACGGCTTTGGAGCTCGAGGAGGCCATGGTATTGCGGAGAGAAGGAAGGGAGGGGAGGATGATGGATGCGGCTATGGT
CGGGCCTACGGTTTATATAGCGGGAAGATGGGAGGGCAACCGGTGACGTAATTAATGGCGGGCGGCAGACAGACGGATGA
ATGGGTGGCACCGGCTTGCCGTTCCTCGGCAATCGCACGCATGTTAAATGTATGCAGGTGGACGGACGGGTTCTCGTTTG
AACATGGGGCAACTGCATGCACCGAAAAACGACGCGGGCGATGCTCCCAATCGTCGCGATGTTTCAATGCCTGAGCGCTT
TGAGAGGTCGCGTCGCTCTGAGCCGCCATTAATACGGCACTCGTGCTCCAGAGTGGTGCTGCTGACCTTTTCCGACGGGA
ACACGCGCGGGCGTGGGTGATTTTTTTTT----AATTAGTCAGGGCAGTCAAAAATGAACGTGACAGTGATTCGACGGAA
CTGCGTTGGATGACAAAACACATTTAAATCGTGCGGTCCGGACG-----------GTACGAGAGTCGGCGAAATGCCTTA
AGAATAGCATT-GCTCCGGAGCAATGATGTGGTTGTCGACTCGTC--GGCTTGTGGCGGAAGTTGGCACATAATTTGTAC
CGCGCTGCTCGAATTGGAAACTACAA-CGTTGCCCGGATTGGGCCCGGGCAAAGTTGCAGCTAGCTACTGTAGCTAGCTA
GCTCTGGCGTCCACGTGAAGCCCTTCGGCCTCCTGTGCATACGCTGGCCCACGTTACTTACTGCGTTGCATTATTGGTAC
GTG---CTCCGCCGTGCAACGGCAATGGTGACGACGGCGATTCTATATTTAGCCATGTGCCTCACGCAAGCACGCACGCA
CTCATCT-------GCAGGAGCCGCATGCGACGACGCTAGAGCTAGCCAGAAAGAGCGGTGCCACATCGATGGCGGCGGG
CGGCGTGTGGGTGTTCCGGAAGGACGGGGTGATGGAGCTGGAGCGGGAGGCGTCGAGCCGGAAGGCGCTGGTGTACGTGC
CGGCGAACGAGACGATGCGCTCCCTGCGGGCGCTGGAGCGGCGGCTGGGGTCGCTGGGATGGGAGCGCTACTACGAGGAC
CGCGCCGTCGTGCAGCTCCACCGCCGCGACGGCAGCCTCGACCTCATCTCGCTCCCGCGAGACTTCGCGCGGTTCCGCTC
CGTCCACATGTACGACGTCGTCGTCAAGAACCGAGGCCACTTCAAGGTCGTCGACCTCTAAGC-------------GTGC
GTCTCGCTCTCGCCGGCCAGTCAAGCTTGCAAGGTGTGTGTTAAACACTGTAC---------------------------
--------------------------TACGTGTGATCGATCATTAGACATTTGCGTCTGTGTGTCATTTGTTGTACGTGT
GATTGATCGTTGTGCGTGTGACACAAATGTATGCCTTGTACTGTTTGGCG-TTTCCGTGTTCGTACGCCTAAGCTAATCG
TGTGGCTTATGTGTGTCCCGTTTTTGTCTTTTCGCTAGCCACCGAATTAAGATTCCAGGATTGCCAGTGTGTGCTACTCC
TATTGATTGGAGCTCCGTAAGAGTAGTACTAATATTATTCGTGCTCATAACAAGTTACACTGATTTTGACCTAATATCCA
AGAAAATACAATGAAATCTCTTGTGGTATCAATCTCTGCTCAAAGGAATACTCCAAAGATTTTGATAAAGAGGCTATAAT
TGGATTGGAGCAACAATGTTGTCACTCTT---TCACCCGCACGAGCATTACCAATAATGGTTTTTGGAAGCGCCTTGAGT
CGCCCATCCAAAAAGATGGGAAGCATGGATCGATGAACGTACTTGGGCCGGGG-ATGATCCTCTAGAAGTGCAGGCCGTC
GAATCACTATATGTTCACCATGGTGTC--GATGAAAAATTCCACCTCCAGAAAGAATCAGACCAACATAAAAA--GCTTG
ACACAACAATATAAAATCATCAAATCCGAATAG-TCGGATCTGCGAGGACAGAAAACTCTCTAACCTCATGGCACCGCCA
AAAGAACG--AGGAAAAATTTATTCTCACAAAATTATGATGATCACTAGACATCAACGAAGAACATAGATGTCTTGAAGA
TTTGAGGCTCCCC-CACCTCTCAGCGCCAAGATGGCAGCCGGAGGCGAGGGGACC-AAATTTCGCAGATG--GTGGCGGC
TATCAAAGGCTAAATTGAAGCATAAATCAGGTTGGGAAGGACTTACCGCCGTCGATGAAGTGGTGATGAAGCGCTAGGGA
TAGTCGTCGCCGGTGATCGTTGT
>chr4A_114
--------------------------------------------------------------------------------
---------------------------------TTGCAGAGAGGAGGAAGGGAGTGGAGGATAATGGATGCGGCTATGGC
CGGGCCTACGGTTTCTATAGCAGGGAGATGACAGGGCAACCGGCGACGTAATTAATGACGGGTGGTAGAC----GGACGA
ACGGGTGGCGTCGGCTCATCGTTCCTCGGCAAACACACAAATGTTAAATGTAGGCAGGCAAACGGACAGGCTATTGTTTG
AAC---GGGCAGCCACATGCACCAGGAAGAGGCGCGGCCGGCGCGTCGTTTTTG------------ATGCCTGAGCGTTA
TGAGAAGTCATGTCGCTTTGAGCCGGTATGAATGCGGCACTGATGCTCTGGAGCGGCACTGCTGACCTTTTTGAA-----
-----CGGGGGCGTAGGGTTTTTTGGTTTGCCAAATTAGTCAAG--------------ACGTGGCAGTGATGCGGCACAA
CCGTGTTAAATGGCAAAACATATCCACATCGTGCGGTTCGGACTGTTACGCGGCAGTACGAGGGTCGGCGAAATGCTTTA
AGAATAGCATTTGCTCAGGAGCAATGATATCGTTGTCGACTCGTCGGGGCTTGTGGCGGAAGTTGGCA------------
------GCTCGAATTGGAAACTACAAACGTTGCCCGGATTGGGCCGGGGTAAAGTTGCAGCTAGCTAGCTAG--------
---CTAGCGTCCACGTGAAGCCCCTCGACCTCCTGTGCATACGCTGGCCCACGTTACTTACTGCCTTGCATTATTGGTAC
GTAGTACTCCGCCGTGCAACGGCAATGGCGACGACGACGATTTTATATTTAGACATGCGCCTCACTCAG-----------
----TCC-------GCAGGAGCCGCATGCGAC---GCTGGAGCTAGCCAGAAACACCGGCACCTCATCGATGGCGGCGGG
CGGCGTGTGGGTGTTCCGGAAGGACGGGGTGATGGAGCTGGAGCGGGAGGCGTCGAGCCGGAAGGCGCTGGTGTACGTGC
CGGCGAACGAGACGATGCGGTCGCTGCGGGCGCTGGAGCGGCGGCTGGCGTCGCTGGGATGGGAGCGCTACTACGAGGAC
CGCGCCGTCGTGCAGCTCCACCGCCGCGACGGCAGCCTCGACCTCATCTCGCTCCCGCGAGACTTCGCGCGCTTCCGCTC
CGTCCACATGTACGACGTCGTCGTCAAGAACCGAGGCCACTTCAAGGTCGTCGACCTCTAACTCTGTAAGCATCCTGTGC
GTCTCACTCTCACCGCCCAGTCAAGCTTGCAAGGTGAAAAAAAAACCTACTTTCCCCGGCCAGTCCAGCTTGCAAGATGT
GTCTGTGTGTTGGTCGTTGTACGGTGTACGTGTGATCGATCCCTGTGTA-------------------------------
----------------------ACAAATGTATGCCTTGTACTGTTTGGCGATTTCCGTGTTCGTACGACTCATCCAATC-
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>chr4B_624
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------------------------------------------------------------------------------TA
AGAATAGCATC-GCTCAGGAGCAATGATATCGCTGTCGACTCGCC--GGCTTGTGGCGGAAGTTGGTATATAATTTGTAC
CGCGCGGCTCGAATTGGAAACTACAAACGTTGCCCGGATTGGGCCGGGGTAAATTTGCTGC----------AGCTAGCTA
GCTCTAGCGTCCACGTGAAGCCCTTCGACCTCCTGTGCATACGCTGGCCCACGTTACTTACTGCCTTGCATTATTGGTAC
---GTACTCCGCCGTGCAACGGCAATGGTGACGACGGCGATTTTATATTTAGACATGTGCCTCACTCA----CGCACGCA
CTCATCTGCAGCCTGCAGGAGCCGCGTGCGTA---GCTAGAGCTAGCCAGAAAGAGCGGTACCGCATCAATGGCGGCGGG
CGGCGTGTGGGTGTTCCGGAAGGACGGGGTGATGGAGCTGGAGCGGGAGGTGTCGAGCCGGAAGGCGCTGGTGTACGTGC
CGGCGAACGAGACGATGCGGTCGCTGCGGGCGCTGGAGCGGCGGCTGGGGTTGCTGGGATGGGAGCGCTACTACGAGGAC
CGCGCCGTCGTGCAGCTCCACCGCCGCGACGGCAGCCTCGACCTCATCTCGCTGCCGCGAGACTTTGCGCGGTTCCGCTC
CGTCCACATGTACGACGTCGTCGTCAAGAACCGAGGCCACTTCAAGGTCGTCGACCTCTAAGC-------------GTGC
GTCTCACTCTCACCGGCCAGTCAAGCTTGCAAGGTCTGTGTTAATCCC--------------------------------
------------------------TGTACGCGTGATCGATCGTTAGACATTTGTGT------------------------
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>chr7A_1681
TCTTTGC-------------------------------------------------------------------------
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------------------------GGTATCAACCTCTGCTCGAAGAAATACTCCAAAGACTTCGGTAAATATGCTGCAAT
TGGACTGGAGCAACGATGTTGTCACTCTT---TCACCCGCACAAACATTACCAATAATGGTTTTTGAAAGCACCTTGAGT
CGCTCATCCAAAAAGATGGGAAGCCTCGATTGATGAACGTACTTGGGCCAGGG-ATGATCCCCTAGAAGTGTAGGCCGCC
GAATCACTATATCTTCGCCATGGTGTC--GATGAAAGATTTCACCTCCACAAATAACCAGACCAACCAAAAAAACTCAA-
--ACGACAACATAAACTCATCAGATCCGAATAAATCAGATCTGCGAGGACAGAAAACTCTCTAACCTCATGGCACCGCCA
GAAGAACGAGAG--AAAAATTATTCTC-----ACTATGATGACCACTAGACATTGACGAAGAATATAGAGGTTTTGAAGA
TCCGAGGTCCCCC-CAGCTCTCAGAACCAAGATGGCGGCCGGAGGCGAGGGGACCTAAATTTCTCAGATG--GTGGCGG-
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>chr6D_1683
TCTTCGC-------------------------------------------------------------------------
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------------------------GGTATCAATCTCTGCTCAAACAAATACTCCGAAGACTTTGGTAAAGATGCTGCAAT
TGGACTTGAGCAACGGTGTTGTTCCTCTT---TCACCCGCATGAACGTTACCAATAATGGTTTTTGAAAGTGCCTTGAGT
CTCCCATCCAAAAAGATGGGAAGCCTTGTTCGATGAATGTACTAGGGGCGGGG-ATGACCCCCTAGAAGTGCAGGCCGTC
GAATCACTATATCTTCACCATGGTGTC--GATGTAAGATTTCACCTCCACAAAGAATCATACCAACATAAAAA--GCTTG
ACACAGCAACTTAAACTCATCATATCCAAATAA-TCGGATCTGCGAGGACAAAAAACTCTCAAACCTCATGGCACCGTCA
AAAGGACA--AG--ATAAATTATTCTCGCAAAACTATGATGATCACTAGACGTTGACGAAGAACATAAAGATCTTGAAGA
TCCCAGGTGCCCC-CATCTCTTAGTGCCAAGATGGCAGCCGGAGGCGAGGGGACCTAAATTTCTCAGATG--GCGGCG--
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>chrUn_1689
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------------------------GGTGTCAATCTCTGCTCAAAGAAATATTCCAAAGACTTCGGTAAAGAGGCTGCAAT
TGGACTGGAGCAACAATGTTGTCACTCTT---TCACCTGCACGAACATTACCAATAATGGTTTTTGAAAACGCCTTGAGT
CGCCCATCCAAAAAGATGAGAAGCCTTGATCGATGAACGTACTTGGGCC-GGG-ATGATCCGCTAGTAGTGTAGGCCGTC
GAATCACTATATCTTCACCATGGCG--TTGATGAAAGATTTCACCTCCATAAAGAATCAGATTAACA-AAAAA--GCTTG
ACGCAGCAACATAAACTCATCAGATCTGAATAA-TCGGATCTGTGAGGACAGAAAACTCTCTAACCTCATAGCACCGCCA
AAAAAATGGAAG--GAAATTTATTCTCACAAAATTGTGATGATCACTAGACGATGGCGAAGAACATAGAGCTCTTAAAGA
TACGAGGTCCCCC-CACCTCTAAGCGCCAAGATGACAGCCGAAGGCGAGGGGACCTAAATTTC-----------------
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>chrUn_1689
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------------------------GGTGTCAATCTCTGCTCAAAGAAATATTCCAAAGACTTCGGTAAAGAGGCTGCAAT
TGGACTGGAGCAACAATGTTGTCACTCTT---TCACCTGCACGAACATTACCAATAATGGTTTTTGAAAACGCCTTGAGT
CGCCCATCCAAAAAGATGAGAAGCCTTGATCGATGAACGTACTTGGGCC-GGG-ATGATCCGCTAGTAGTGTAGGCCGTC
GAATCACTATATCTTCACCATGGCG--TTGATGAAAGATTTCACCTCCATAAAGAATCAGATTAACA-AAAAA--GCTTG
ACGCAGCAACATAAACTCATCAGATCTGAATAA-TCGGATCCGTGAGGACAGAAAACTCTCTAACCTCATAGCACCGCCA
AAAAAATGGAAG--GAAATTTATTCTCACAAAATTGTGATGATCACTAGACGATGGCGAAGAACATAGAGCTCTTAAAGA
TACGAGGTCCCCC-CACCTCTAAGCGCCAAGATGACAGCCGAAGGCGAGGGGACCTAAATTTCTAAGAT-----------
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>chr7D_1689
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------------------------GGTGTCAATCTCTGCTCAAAGAAATATTCCAAAGACTTCGGTAAAGAGGCTGCAAT
TGGACTGGAGCAACAATGTTGTCACTCTT---TCACCTGCACGAACATTACCAATAATGGTTTTTGAAAACGCCTTGAGT
CGCCCATCCAAAAAGATGAGAAGCCTTGATCGATGAACGTACTTGGGCC-GGG-ATGATCCGCTGGTAGTGTAGGCCGTC
GAATCACTATATCTTCACCATGGCGTTTTGATGAAAGATTTCACCTCCATAAAGAATCAGATTAACA-AAAAA--GCTTG
ACGCAGCAACATAAACTCATCAGATCTGAATAA-TCGGATCTGTGAGGACAGAAAACTCTCTAACCTCATAGCACCGCCA
AAAAAA-GGGAG--AAAATTTATTCTCACAAAATTGTGATGATCACTAGACGATGGCGAAGAACATAGAGCTCTTAAAGA
TACGAGGTCCCCCT-ACCTCTAAGCGCCAAGATGACAGCCGAAGGCGAGGGGACCTAAATTTC-----------------
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>chr3A_1693
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----------------------------TCAATCTCTGCTCGAAGAAATATTCCAAGGACTCCGGTAAAGAGGCTGTAAT
TTGACTTGAGCATCGATGTTGTCACTCTT---CCACCCGCACGAACATTACCAATAATGGTTTTTGAAAGCGCCTTGAGT
CGCCCATCCAAACAGATGGGAAGCCTTGATCGATGAAAGTACTTGGGCC-GGGGATGATCCCCTAGAAGTGCAGGCCGAC
GAATCACTATATCTTCACCATGTTGTC--GATGAAATATTTCACCCCCACAAAGAATCAAACCAACA-AAAAA-GGCTTG
ACACAACAACATAAACTCATCATATCTGAATAA-TCGGATATGAGAGGACAGAAAACTCTCTAACCTCATGGCACCGCCA
AAAGAACGTGAG--GAAATTTATTCTCACAAAACTATGATGATCACTAGACGATGGCGAAGAACATAGAGGTCTTGAAGA
TTCGAGGT-CCCCCCACCTCTCAGCCCCAAGATGGCAGCCGAAGGCGAGGGGACCTAAATTTCTTAGATG----------
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>chr6D_1693
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----------------------------TCAATCTCTGCTTGAAAAAATACTCCAAAGACTTCGTTAAAGAGGTTGCAAT
TGGACTAGAGCAACGATGTTGTCACTCCT---TCACCCGCACGAACATTACCAATAATGGTTTTTGAAAGCGTCTTGAGT
CGCCCATCCAAAAAGATGGGAAGCCTTGATTGATTAACGTACTTGGGCC-AGGGATGAACCCCTAGAAGTGCAGGCCGTC
AAATCACTATATCTTCACCATGGTGCC--GATGAAAGATTTCACCTCCACAAAAAATCAGACCAACA-AAAAAAGGCTTG
ACACAACAATATATACTCATCAGATCTGAATAA-TTGGATCTGTAAGGACAAAAAACTCTCTAACCTCATGGCACCGCCA
AAACAATGAGAG--GAAATTTATTCTCGCAAAACTATAGTGGTCGCTAGACGATAGCGAAGGACATAGAGGTCTTGAAGA
TCCGAGGCCCCCCTCACCTCTCAGCGCCAAGATGGCAGCCGGAGGCGAAGGGACCTAAATTTCTCAGACG--GCGGCGGC
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>chr7D_1693
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----------------------------TCAATCTCTGCTCGAAGAAATACTCCAAAGACTTTGGTAAAGAGGCTGCAAT
TGGACTGGAGCAACGATGTTGTCAC---T---TCACCCGCACAAACATTACCAATAATGGTTTTTGAAAGCGCCTTGAGC
CACCCATCCAAAAAGATGGGAAGTCTTGATCGATGAACATACTTGGGCC-AAGGATGATCCCCTAGAAGTGTAGGCCGTC
GAATCACTATATCTTCACCATGGTGTC--AATGAAAGATTTCACCTCCACAAAGAATCAGACCAACA-AAAAAAG-CTTG
ACACAGCAACATAAACTCATCAGATCTGAATAA-TCGGATCTGCGAGGACAGAAAACTCGCTAATCTCATGGCACCGCCA
AAAAGA-GAGAG--GAAATTTATTCTCACAAAACTATAATGATCACTAGACGATGGCAAAGGACATAGAGGTCTTGATGA
TTCGAGGT-CTT-CCACCTCTCAGCGCCAAGATGGCAGCCGTAGACGAGGG-ACCTAAATTTCTCAGAGGT---------
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>chr6D_1696
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-------------------------------ATCTCTGCTCGTAGAAATACTTCAAAGACTTCGGTAAAGAGGCTGTAAT
TGGACTGGAGCAACGATATTGTCAC---TCTTTCACCTGCACGAACATTACTAGTAATTGTTTTTGAAAGCGCCTTGAGT
CGCCCATCCAAAAAGATGGGAAGCCTTGATCGATGAACGTACTTGGGCC-GGGGATGATCCCCTAGAACTGCAGGTCGTC
GAATAACTATATCTTCACCATGATGTC--GATGAAAGATTTCAGCTCCACAAAGAATCAGACCAACA-AAAAA--GCTTG
ACACAACAATATAAACTCAACACATCCGAATAC-TCGGATCCACGAGGACAGAAAACTCTCTAATCTCATGGCACCGCCA
AAAGAATGAGAG--ACAATTTATTCTCACTAAACTATGATGATCACTAGACGTTGACGAAGAACATAGAGATCTTGAAGA
TCTGAGCACCGCCCCACCTCTCAACACCAAGATGGTAGCCGGAGGCGAGGGGACCTAAATTTCTCAGATGTGGTGGCGGC
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-----------------------
>SNPs
SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----S----------S-------S----------------S
--------------S------S--S-----SS-----------S-------------S----S--S----SSSS---S--
-S-------SS-----SSS-------------S-S---SS------------S-----SSS------S--S-S-S-----
---SSS-----S-SS--------SSS--SS-S-----S--SS--SS-SSS-SSSSSSSSSSSSSSS-----------S-S
-----S---SS------S-------SS--S---S-------SS-----SS---S--SS-------------SSS-SSSSS
SSSSS--S------S--SSS----SS----------------S-SSSSSSSSSSSSSS-----S-------S--S-SS--
-S-S---SS---S-------S--SS-S----------S-----S------------------S-------------S---
----------------S-----------S-S-------------------------------------S-----------
-----S---------------------------------------S---S-----------------SSSS---------
-----S---------------------S------------------------------------S---------------
--S---------------------------------------S---------S------------S--SSSS--------
--------------------------------SSS-------------------------S--S----------------
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-------------------S--S---------------------------------------------------------
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-----S-----S----------------------------------S-SS-SS---------------------------
-----------------------------------------S-----------S--SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------------------------------------------S--S-S-S----S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS---------------------S-------------S----S----------S----
----S---------------------------------------S---------------------S-------------
------------------------S-S----------------------------------S------------------
------------S-----------------------S---S--------S------------------------------
---------------S------S---------S-----------------------------------------------
------------SS---------------------------------------S---------------S----------
--------S------------------------------------------------------S----------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_385
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---------------------------------------------CCCAATCGTCGCGATGTTTC---------------
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>reverse_2376
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-------------------------------------------------------TGAAGTGGTGATGAAGCGCT-----
-----------------------
