Multiple sequence alignment - TraesCS4D01G301800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G301800 chr4D 100.000 4014 0 0 1 4014 469872826 469868813 0.000000e+00 7413.0
1 TraesCS4D01G301800 chr4D 97.826 506 11 0 3509 4014 449741148 449741653 0.000000e+00 874.0
2 TraesCS4D01G301800 chr4B 93.271 3017 93 53 506 3461 591284512 591281545 0.000000e+00 4346.0
3 TraesCS4D01G301800 chr4A 94.713 2251 72 19 835 3057 1725565 1727796 0.000000e+00 3454.0
4 TraesCS4D01G301800 chr4A 85.386 479 53 10 1 466 1716795 1717269 7.800000e-132 481.0
5 TraesCS4D01G301800 chr4A 85.948 427 28 14 3090 3493 1727800 1728217 1.030000e-115 427.0
6 TraesCS4D01G301800 chr4A 78.947 228 20 6 511 717 1725189 1725409 3.260000e-26 130.0
7 TraesCS4D01G301800 chr4A 94.231 52 3 0 455 506 613419897 613419948 3.330000e-11 80.5
8 TraesCS4D01G301800 chr2D 98.228 508 8 1 3508 4014 375262142 375261635 0.000000e+00 887.0
9 TraesCS4D01G301800 chr2D 96.857 509 12 1 3506 4014 620002263 620001759 0.000000e+00 848.0
10 TraesCS4D01G301800 chr2D 97.917 48 1 0 459 506 601207551 601207504 2.570000e-12 84.2
11 TraesCS4D01G301800 chr2D 94.231 52 3 0 460 511 447497038 447496987 3.330000e-11 80.5
12 TraesCS4D01G301800 chr1D 97.628 506 12 0 3509 4014 486710568 486710063 0.000000e+00 869.0
13 TraesCS4D01G301800 chr1D 97.431 506 12 1 3509 4014 149532880 149533384 0.000000e+00 861.0
14 TraesCS4D01G301800 chr1D 96.078 51 2 0 456 506 487358034 487358084 2.570000e-12 84.2
15 TraesCS4D01G301800 chr1D 97.872 47 1 0 460 506 195609570 195609616 9.250000e-12 82.4
16 TraesCS4D01G301800 chr7D 97.628 506 10 2 3510 4014 58843789 58844293 0.000000e+00 867.0
17 TraesCS4D01G301800 chr7D 97.211 502 14 0 3513 4014 592315243 592314742 0.000000e+00 850.0
18 TraesCS4D01G301800 chr6D 97.266 512 12 2 3504 4014 65628725 65629235 0.000000e+00 867.0
19 TraesCS4D01G301800 chr3D 96.911 518 14 2 3497 4014 388788955 388789470 0.000000e+00 867.0
20 TraesCS4D01G301800 chr3D 94.643 56 1 2 451 505 498425570 498425516 7.150000e-13 86.1
21 TraesCS4D01G301800 chr3D 97.872 47 1 0 460 506 355714603 355714649 9.250000e-12 82.4
22 TraesCS4D01G301800 chr1B 96.154 52 1 1 456 506 66942198 66942147 2.570000e-12 84.2
23 TraesCS4D01G301800 chr1B 97.917 48 1 0 459 506 452571348 452571301 2.570000e-12 84.2
24 TraesCS4D01G301800 chr5D 94.595 37 2 0 107 143 218567408 218567372 1.560000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G301800 chr4D 469868813 469872826 4013 True 7413 7413 100.000 1 4014 1 chr4D.!!$R1 4013
1 TraesCS4D01G301800 chr4D 449741148 449741653 505 False 874 874 97.826 3509 4014 1 chr4D.!!$F1 505
2 TraesCS4D01G301800 chr4B 591281545 591284512 2967 True 4346 4346 93.271 506 3461 1 chr4B.!!$R1 2955
3 TraesCS4D01G301800 chr4A 1725189 1728217 3028 False 1337 3454 86.536 511 3493 3 chr4A.!!$F3 2982
4 TraesCS4D01G301800 chr2D 375261635 375262142 507 True 887 887 98.228 3508 4014 1 chr2D.!!$R1 506
5 TraesCS4D01G301800 chr2D 620001759 620002263 504 True 848 848 96.857 3506 4014 1 chr2D.!!$R4 508
6 TraesCS4D01G301800 chr1D 486710063 486710568 505 True 869 869 97.628 3509 4014 1 chr1D.!!$R1 505
7 TraesCS4D01G301800 chr1D 149532880 149533384 504 False 861 861 97.431 3509 4014 1 chr1D.!!$F1 505
8 TraesCS4D01G301800 chr7D 58843789 58844293 504 False 867 867 97.628 3510 4014 1 chr7D.!!$F1 504
9 TraesCS4D01G301800 chr7D 592314742 592315243 501 True 850 850 97.211 3513 4014 1 chr7D.!!$R1 501
10 TraesCS4D01G301800 chr6D 65628725 65629235 510 False 867 867 97.266 3504 4014 1 chr6D.!!$F1 510
11 TraesCS4D01G301800 chr3D 388788955 388789470 515 False 867 867 96.911 3497 4014 1 chr3D.!!$F2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 0.034089 GCCAGTCAGCCCAGGTTTAT 60.034 55.0 0.0 0.0 0.0 1.40 F
1598 1761 0.035881 TTGCCACCTCTCTTGCTCAG 59.964 55.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 1810 0.234884 CTGCGAGAACGAAACCAACC 59.765 55.0 0.00 0.0 42.66 3.77 R
3223 3418 0.179189 GGAAGCGGCGTTTGATGAAG 60.179 55.0 15.15 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203070 GATCCGTTGCCGAGCCAT 60.203 61.111 0.00 0.00 35.63 4.40
18 19 2.514592 ATCCGTTGCCGAGCCATG 60.515 61.111 0.00 0.00 35.63 3.66
19 20 4.776322 TCCGTTGCCGAGCCATGG 62.776 66.667 7.63 7.63 35.63 3.66
30 31 2.415843 GCCATGGCTACGCGTAGA 59.584 61.111 42.08 26.74 38.26 2.59
31 32 1.949631 GCCATGGCTACGCGTAGAC 60.950 63.158 42.08 40.60 41.58 2.59
32 33 1.657487 CCATGGCTACGCGTAGACG 60.657 63.158 42.08 29.53 44.14 4.18
33 34 1.063649 CATGGCTACGCGTAGACGT 59.936 57.895 42.08 38.89 44.14 4.34
34 35 0.524816 CATGGCTACGCGTAGACGTT 60.525 55.000 42.08 30.30 45.75 3.99
35 36 0.524816 ATGGCTACGCGTAGACGTTG 60.525 55.000 42.08 21.32 45.75 4.10
36 37 1.135315 GGCTACGCGTAGACGTTGA 59.865 57.895 42.08 12.19 45.75 3.18
37 38 0.860618 GGCTACGCGTAGACGTTGAG 60.861 60.000 42.08 21.85 45.75 3.02
38 39 1.462094 GCTACGCGTAGACGTTGAGC 61.462 60.000 42.08 27.04 45.75 4.26
39 40 0.096628 CTACGCGTAGACGTTGAGCT 59.903 55.000 36.87 0.82 45.75 4.09
40 41 0.095935 TACGCGTAGACGTTGAGCTC 59.904 55.000 16.41 6.82 45.75 4.09
41 42 1.868251 CGCGTAGACGTTGAGCTCC 60.868 63.158 12.15 0.00 42.22 4.70
42 43 1.868251 GCGTAGACGTTGAGCTCCG 60.868 63.158 12.15 11.12 42.22 4.63
43 44 1.792301 CGTAGACGTTGAGCTCCGA 59.208 57.895 17.62 1.13 34.11 4.55
44 45 0.247735 CGTAGACGTTGAGCTCCGAG 60.248 60.000 17.62 8.37 34.11 4.63
45 46 0.523757 GTAGACGTTGAGCTCCGAGC 60.524 60.000 17.62 12.80 42.84 5.03
81 82 4.506255 GCGGGGTGGAGGGGAATG 62.506 72.222 0.00 0.00 0.00 2.67
82 83 3.015145 CGGGGTGGAGGGGAATGT 61.015 66.667 0.00 0.00 0.00 2.71
83 84 2.683475 GGGGTGGAGGGGAATGTG 59.317 66.667 0.00 0.00 0.00 3.21
84 85 1.928567 GGGGTGGAGGGGAATGTGA 60.929 63.158 0.00 0.00 0.00 3.58
85 86 1.609783 GGGTGGAGGGGAATGTGAG 59.390 63.158 0.00 0.00 0.00 3.51
86 87 1.208165 GGGTGGAGGGGAATGTGAGT 61.208 60.000 0.00 0.00 0.00 3.41
87 88 0.035056 GGTGGAGGGGAATGTGAGTG 60.035 60.000 0.00 0.00 0.00 3.51
88 89 0.693049 GTGGAGGGGAATGTGAGTGT 59.307 55.000 0.00 0.00 0.00 3.55
89 90 0.692476 TGGAGGGGAATGTGAGTGTG 59.308 55.000 0.00 0.00 0.00 3.82
90 91 0.984230 GGAGGGGAATGTGAGTGTGA 59.016 55.000 0.00 0.00 0.00 3.58
91 92 1.339151 GGAGGGGAATGTGAGTGTGAC 60.339 57.143 0.00 0.00 0.00 3.67
92 93 1.625818 GAGGGGAATGTGAGTGTGACT 59.374 52.381 0.00 0.00 0.00 3.41
93 94 2.832129 GAGGGGAATGTGAGTGTGACTA 59.168 50.000 0.00 0.00 0.00 2.59
94 95 2.834549 AGGGGAATGTGAGTGTGACTAG 59.165 50.000 0.00 0.00 0.00 2.57
95 96 2.093447 GGGGAATGTGAGTGTGACTAGG 60.093 54.545 0.00 0.00 0.00 3.02
96 97 2.093447 GGGAATGTGAGTGTGACTAGGG 60.093 54.545 0.00 0.00 0.00 3.53
97 98 2.567615 GGAATGTGAGTGTGACTAGGGT 59.432 50.000 0.00 0.00 0.00 4.34
98 99 3.008049 GGAATGTGAGTGTGACTAGGGTT 59.992 47.826 0.00 0.00 0.00 4.11
99 100 3.963428 ATGTGAGTGTGACTAGGGTTC 57.037 47.619 0.00 0.00 0.00 3.62
100 101 1.611977 TGTGAGTGTGACTAGGGTTCG 59.388 52.381 0.00 0.00 0.00 3.95
101 102 1.884579 GTGAGTGTGACTAGGGTTCGA 59.115 52.381 0.00 0.00 0.00 3.71
102 103 2.095161 GTGAGTGTGACTAGGGTTCGAG 60.095 54.545 0.00 0.00 0.00 4.04
103 104 1.473278 GAGTGTGACTAGGGTTCGAGG 59.527 57.143 0.00 0.00 0.00 4.63
104 105 1.203025 AGTGTGACTAGGGTTCGAGGT 60.203 52.381 0.00 0.00 0.00 3.85
105 106 1.617357 GTGTGACTAGGGTTCGAGGTT 59.383 52.381 0.00 0.00 0.00 3.50
106 107 1.616865 TGTGACTAGGGTTCGAGGTTG 59.383 52.381 0.00 0.00 0.00 3.77
107 108 0.606604 TGACTAGGGTTCGAGGTTGC 59.393 55.000 0.00 0.00 0.00 4.17
108 109 0.108281 GACTAGGGTTCGAGGTTGCC 60.108 60.000 0.00 0.00 0.00 4.52
109 110 1.153628 CTAGGGTTCGAGGTTGCCG 60.154 63.158 0.00 0.00 0.00 5.69
110 111 1.885163 CTAGGGTTCGAGGTTGCCGT 61.885 60.000 0.00 0.00 0.00 5.68
111 112 1.880819 TAGGGTTCGAGGTTGCCGTC 61.881 60.000 0.00 0.00 0.00 4.79
112 113 2.741211 GGTTCGAGGTTGCCGTCC 60.741 66.667 0.00 0.00 0.00 4.79
113 114 3.110178 GTTCGAGGTTGCCGTCCG 61.110 66.667 0.00 0.00 0.00 4.79
114 115 3.296836 TTCGAGGTTGCCGTCCGA 61.297 61.111 0.00 0.00 0.00 4.55
115 116 3.562779 TTCGAGGTTGCCGTCCGAC 62.563 63.158 0.00 0.00 0.00 4.79
116 117 4.052229 CGAGGTTGCCGTCCGACT 62.052 66.667 0.00 0.00 0.00 4.18
117 118 2.342648 GAGGTTGCCGTCCGACTT 59.657 61.111 0.00 0.00 0.00 3.01
118 119 1.588082 GAGGTTGCCGTCCGACTTA 59.412 57.895 0.00 0.00 0.00 2.24
119 120 0.037975 GAGGTTGCCGTCCGACTTAA 60.038 55.000 0.00 0.00 0.00 1.85
120 121 0.393820 AGGTTGCCGTCCGACTTAAA 59.606 50.000 0.00 0.00 0.00 1.52
121 122 1.002773 AGGTTGCCGTCCGACTTAAAT 59.997 47.619 0.00 0.00 0.00 1.40
122 123 2.234414 AGGTTGCCGTCCGACTTAAATA 59.766 45.455 0.00 0.00 0.00 1.40
123 124 2.606272 GGTTGCCGTCCGACTTAAATAG 59.394 50.000 0.00 0.00 0.00 1.73
124 125 1.930567 TGCCGTCCGACTTAAATAGC 58.069 50.000 0.00 0.00 0.00 2.97
125 126 1.215244 GCCGTCCGACTTAAATAGCC 58.785 55.000 0.00 0.00 0.00 3.93
126 127 1.484356 CCGTCCGACTTAAATAGCCG 58.516 55.000 0.00 0.00 0.00 5.52
133 134 4.468095 CGACTTAAATAGCCGGATTTGG 57.532 45.455 5.05 3.98 31.51 3.28
134 135 3.875134 CGACTTAAATAGCCGGATTTGGT 59.125 43.478 5.05 7.15 31.51 3.67
135 136 4.025145 CGACTTAAATAGCCGGATTTGGTC 60.025 45.833 5.05 14.10 33.92 4.02
136 137 4.204799 ACTTAAATAGCCGGATTTGGTCC 58.795 43.478 5.05 0.00 44.10 4.46
137 138 2.067365 AAATAGCCGGATTTGGTCCC 57.933 50.000 5.05 0.00 44.77 4.46
138 139 1.222567 AATAGCCGGATTTGGTCCCT 58.777 50.000 5.05 0.00 44.77 4.20
139 140 1.222567 ATAGCCGGATTTGGTCCCTT 58.777 50.000 5.05 0.00 44.77 3.95
140 141 0.996583 TAGCCGGATTTGGTCCCTTT 59.003 50.000 5.05 0.00 44.77 3.11
141 142 0.611896 AGCCGGATTTGGTCCCTTTG 60.612 55.000 5.05 0.00 44.77 2.77
142 143 1.604147 GCCGGATTTGGTCCCTTTGG 61.604 60.000 5.05 0.00 44.77 3.28
143 144 1.604147 CCGGATTTGGTCCCTTTGGC 61.604 60.000 0.00 0.00 44.77 4.52
144 145 1.890174 GGATTTGGTCCCTTTGGCG 59.110 57.895 0.00 0.00 41.50 5.69
145 146 1.604147 GGATTTGGTCCCTTTGGCGG 61.604 60.000 0.00 0.00 41.50 6.13
146 147 2.225791 GATTTGGTCCCTTTGGCGGC 62.226 60.000 0.00 0.00 0.00 6.53
163 164 3.692367 CGCGCCGGATCGTCATTC 61.692 66.667 5.05 0.00 0.00 2.67
164 165 2.279517 GCGCCGGATCGTCATTCT 60.280 61.111 5.05 0.00 0.00 2.40
165 166 2.303676 GCGCCGGATCGTCATTCTC 61.304 63.158 5.05 0.00 0.00 2.87
166 167 1.065764 CGCCGGATCGTCATTCTCA 59.934 57.895 5.05 0.00 0.00 3.27
167 168 1.209275 CGCCGGATCGTCATTCTCAC 61.209 60.000 5.05 0.00 0.00 3.51
168 169 0.876342 GCCGGATCGTCATTCTCACC 60.876 60.000 5.05 0.00 0.00 4.02
169 170 0.459899 CCGGATCGTCATTCTCACCA 59.540 55.000 0.00 0.00 0.00 4.17
170 171 1.536922 CCGGATCGTCATTCTCACCAG 60.537 57.143 0.00 0.00 0.00 4.00
171 172 1.405463 CGGATCGTCATTCTCACCAGA 59.595 52.381 0.00 0.00 0.00 3.86
172 173 2.796383 CGGATCGTCATTCTCACCAGAC 60.796 54.545 0.00 0.00 0.00 3.51
173 174 2.482142 GGATCGTCATTCTCACCAGACC 60.482 54.545 0.00 0.00 0.00 3.85
174 175 0.526211 TCGTCATTCTCACCAGACCG 59.474 55.000 0.00 0.00 0.00 4.79
175 176 1.078759 CGTCATTCTCACCAGACCGC 61.079 60.000 0.00 0.00 0.00 5.68
176 177 0.741221 GTCATTCTCACCAGACCGCC 60.741 60.000 0.00 0.00 0.00 6.13
177 178 1.811266 CATTCTCACCAGACCGCCG 60.811 63.158 0.00 0.00 0.00 6.46
178 179 1.982395 ATTCTCACCAGACCGCCGA 60.982 57.895 0.00 0.00 0.00 5.54
179 180 1.949847 ATTCTCACCAGACCGCCGAG 61.950 60.000 0.00 0.00 0.00 4.63
180 181 3.374402 CTCACCAGACCGCCGAGT 61.374 66.667 0.00 0.00 0.00 4.18
181 182 2.915659 TCACCAGACCGCCGAGTT 60.916 61.111 0.00 0.00 0.00 3.01
182 183 2.030562 CACCAGACCGCCGAGTTT 59.969 61.111 0.00 0.00 0.00 2.66
183 184 1.180456 TCACCAGACCGCCGAGTTTA 61.180 55.000 0.00 0.00 0.00 2.01
184 185 1.012486 CACCAGACCGCCGAGTTTAC 61.012 60.000 0.00 0.00 0.00 2.01
185 186 1.290955 CCAGACCGCCGAGTTTACA 59.709 57.895 0.00 0.00 0.00 2.41
186 187 0.108329 CCAGACCGCCGAGTTTACAT 60.108 55.000 0.00 0.00 0.00 2.29
187 188 0.999406 CAGACCGCCGAGTTTACATG 59.001 55.000 0.00 0.00 0.00 3.21
188 189 0.108329 AGACCGCCGAGTTTACATGG 60.108 55.000 0.00 0.00 0.00 3.66
189 190 1.078708 ACCGCCGAGTTTACATGGG 60.079 57.895 0.00 0.00 0.00 4.00
190 191 1.078708 CCGCCGAGTTTACATGGGT 60.079 57.895 0.00 0.00 0.00 4.51
191 192 1.366111 CCGCCGAGTTTACATGGGTG 61.366 60.000 0.00 0.00 0.00 4.61
192 193 0.672401 CGCCGAGTTTACATGGGTGT 60.672 55.000 0.00 0.00 42.39 4.16
193 194 1.530323 GCCGAGTTTACATGGGTGTT 58.470 50.000 0.00 0.00 39.77 3.32
194 195 1.467342 GCCGAGTTTACATGGGTGTTC 59.533 52.381 0.00 0.00 39.77 3.18
195 196 1.730064 CCGAGTTTACATGGGTGTTCG 59.270 52.381 0.00 0.98 39.77 3.95
196 197 1.127951 CGAGTTTACATGGGTGTTCGC 59.872 52.381 0.00 0.00 39.77 4.70
197 198 1.467342 GAGTTTACATGGGTGTTCGCC 59.533 52.381 0.00 0.00 39.77 5.54
198 199 1.073284 AGTTTACATGGGTGTTCGCCT 59.927 47.619 0.00 0.00 39.77 5.52
199 200 2.303600 AGTTTACATGGGTGTTCGCCTA 59.696 45.455 0.00 0.00 39.77 3.93
200 201 2.676342 GTTTACATGGGTGTTCGCCTAG 59.324 50.000 0.00 0.00 39.77 3.02
201 202 0.828022 TACATGGGTGTTCGCCTAGG 59.172 55.000 3.67 3.67 39.77 3.02
202 203 1.198759 ACATGGGTGTTCGCCTAGGT 61.199 55.000 11.31 0.61 34.01 3.08
203 204 0.462047 CATGGGTGTTCGCCTAGGTC 60.462 60.000 11.31 1.66 0.00 3.85
204 205 1.623542 ATGGGTGTTCGCCTAGGTCC 61.624 60.000 11.31 3.99 0.00 4.46
205 206 1.988406 GGGTGTTCGCCTAGGTCCT 60.988 63.158 11.31 0.00 0.00 3.85
206 207 1.218316 GGTGTTCGCCTAGGTCCTG 59.782 63.158 11.31 0.00 0.00 3.86
207 208 1.448013 GTGTTCGCCTAGGTCCTGC 60.448 63.158 11.31 0.00 0.00 4.85
208 209 1.911269 TGTTCGCCTAGGTCCTGCA 60.911 57.895 11.31 0.99 0.00 4.41
209 210 1.448013 GTTCGCCTAGGTCCTGCAC 60.448 63.158 11.31 0.00 0.00 4.57
210 211 3.001902 TTCGCCTAGGTCCTGCACG 62.002 63.158 11.31 3.38 0.00 5.34
212 213 4.840005 GCCTAGGTCCTGCACGCC 62.840 72.222 11.31 0.00 0.00 5.68
213 214 3.390521 CCTAGGTCCTGCACGCCA 61.391 66.667 0.00 0.00 0.00 5.69
214 215 2.185350 CTAGGTCCTGCACGCCAG 59.815 66.667 0.00 0.00 41.41 4.85
215 216 2.603473 TAGGTCCTGCACGCCAGT 60.603 61.111 0.00 0.00 40.06 4.00
216 217 2.564553 CTAGGTCCTGCACGCCAGTC 62.565 65.000 0.00 0.00 40.06 3.51
217 218 4.008933 GGTCCTGCACGCCAGTCT 62.009 66.667 3.40 0.00 40.06 3.24
218 219 2.740055 GTCCTGCACGCCAGTCTG 60.740 66.667 0.00 0.00 40.06 3.51
219 220 2.917227 TCCTGCACGCCAGTCTGA 60.917 61.111 0.00 0.00 40.06 3.27
220 221 2.267006 CCTGCACGCCAGTCTGAT 59.733 61.111 0.00 0.00 40.06 2.90
221 222 2.104859 CCTGCACGCCAGTCTGATG 61.105 63.158 0.00 0.00 40.06 3.07
222 223 1.375140 CTGCACGCCAGTCTGATGT 60.375 57.895 0.00 0.00 36.79 3.06
223 224 1.632948 CTGCACGCCAGTCTGATGTG 61.633 60.000 15.93 15.93 36.79 3.21
224 225 2.393768 GCACGCCAGTCTGATGTGG 61.394 63.158 19.59 4.97 36.85 4.17
228 229 2.981302 CCAGTCTGATGTGGCGGA 59.019 61.111 0.00 0.00 0.00 5.54
229 230 1.448540 CCAGTCTGATGTGGCGGAC 60.449 63.158 0.00 0.00 43.05 4.79
230 231 1.807165 CAGTCTGATGTGGCGGACG 60.807 63.158 0.00 0.00 46.36 4.79
231 232 2.261671 GTCTGATGTGGCGGACGT 59.738 61.111 0.00 0.00 34.76 4.34
232 233 2.094659 GTCTGATGTGGCGGACGTG 61.095 63.158 0.00 0.00 34.76 4.49
233 234 2.048222 CTGATGTGGCGGACGTGT 60.048 61.111 0.00 0.00 0.00 4.49
234 235 2.356913 TGATGTGGCGGACGTGTG 60.357 61.111 0.00 0.00 0.00 3.82
235 236 3.788766 GATGTGGCGGACGTGTGC 61.789 66.667 0.00 0.00 0.00 4.57
236 237 4.314440 ATGTGGCGGACGTGTGCT 62.314 61.111 0.00 0.00 0.00 4.40
238 239 4.961511 GTGGCGGACGTGTGCTGA 62.962 66.667 0.00 0.00 0.00 4.26
239 240 4.961511 TGGCGGACGTGTGCTGAC 62.962 66.667 0.00 0.00 0.00 3.51
247 248 2.052237 GTGTGCTGACGCGTTTGG 60.052 61.111 15.53 7.99 39.65 3.28
248 249 3.276091 TGTGCTGACGCGTTTGGG 61.276 61.111 15.53 5.24 39.65 4.12
249 250 4.683334 GTGCTGACGCGTTTGGGC 62.683 66.667 15.53 15.71 39.65 5.36
252 253 3.423154 CTGACGCGTTTGGGCCTC 61.423 66.667 15.53 0.00 0.00 4.70
254 255 4.699522 GACGCGTTTGGGCCTCCT 62.700 66.667 15.53 0.00 0.00 3.69
255 256 4.699522 ACGCGTTTGGGCCTCCTC 62.700 66.667 5.58 0.00 0.00 3.71
258 259 4.697756 CGTTTGGGCCTCCTCGCA 62.698 66.667 4.53 0.00 0.00 5.10
259 260 2.044946 GTTTGGGCCTCCTCGCAT 60.045 61.111 4.53 0.00 0.00 4.73
260 261 2.115291 GTTTGGGCCTCCTCGCATC 61.115 63.158 4.53 0.00 0.00 3.91
261 262 3.344137 TTTGGGCCTCCTCGCATCC 62.344 63.158 4.53 0.00 0.00 3.51
270 271 3.933722 CTCGCATCCGCCCCAGAT 61.934 66.667 0.00 0.00 33.11 2.90
271 272 2.523168 TCGCATCCGCCCCAGATA 60.523 61.111 0.00 0.00 33.11 1.98
272 273 1.892819 CTCGCATCCGCCCCAGATAT 61.893 60.000 0.00 0.00 33.11 1.63
273 274 1.742880 CGCATCCGCCCCAGATATG 60.743 63.158 0.00 0.00 33.11 1.78
274 275 1.377725 GCATCCGCCCCAGATATGG 60.378 63.158 0.00 0.00 0.00 2.74
281 282 3.891817 CCCAGATATGGGCCGAGT 58.108 61.111 13.65 0.00 42.99 4.18
282 283 3.067011 CCCAGATATGGGCCGAGTA 57.933 57.895 13.65 0.00 42.99 2.59
283 284 0.608640 CCCAGATATGGGCCGAGTAC 59.391 60.000 13.65 0.00 42.99 2.73
284 285 0.243907 CCAGATATGGGCCGAGTACG 59.756 60.000 0.00 0.00 39.43 3.67
285 286 1.244816 CAGATATGGGCCGAGTACGA 58.755 55.000 0.00 0.00 42.66 3.43
286 287 1.200252 CAGATATGGGCCGAGTACGAG 59.800 57.143 0.00 0.00 42.66 4.18
287 288 0.526662 GATATGGGCCGAGTACGAGG 59.473 60.000 0.00 5.44 42.66 4.63
288 289 0.898789 ATATGGGCCGAGTACGAGGG 60.899 60.000 10.86 4.06 42.66 4.30
289 290 1.998444 TATGGGCCGAGTACGAGGGA 61.998 60.000 10.86 0.00 42.66 4.20
290 291 2.521224 GGGCCGAGTACGAGGGAT 60.521 66.667 10.86 0.00 42.66 3.85
291 292 2.728817 GGCCGAGTACGAGGGATG 59.271 66.667 10.86 0.00 42.66 3.51
292 293 2.027751 GCCGAGTACGAGGGATGC 59.972 66.667 10.86 0.00 42.66 3.91
293 294 2.728817 CCGAGTACGAGGGATGCC 59.271 66.667 0.00 0.00 42.66 4.40
294 295 2.125326 CCGAGTACGAGGGATGCCA 61.125 63.158 5.86 0.00 42.66 4.92
295 296 1.360551 CGAGTACGAGGGATGCCAG 59.639 63.158 5.86 1.04 42.66 4.85
296 297 1.384989 CGAGTACGAGGGATGCCAGT 61.385 60.000 5.86 7.86 42.66 4.00
297 298 0.386113 GAGTACGAGGGATGCCAGTC 59.614 60.000 5.86 0.00 0.00 3.51
298 299 0.324368 AGTACGAGGGATGCCAGTCA 60.324 55.000 5.86 0.00 0.00 3.41
299 300 0.103208 GTACGAGGGATGCCAGTCAG 59.897 60.000 5.86 0.00 0.00 3.51
300 301 1.676678 TACGAGGGATGCCAGTCAGC 61.677 60.000 5.86 0.00 0.00 4.26
304 305 2.124403 GGATGCCAGTCAGCCCAG 60.124 66.667 0.00 0.00 45.34 4.45
305 306 2.124403 GATGCCAGTCAGCCCAGG 60.124 66.667 0.00 0.00 0.00 4.45
306 307 2.937689 ATGCCAGTCAGCCCAGGT 60.938 61.111 0.00 0.00 0.00 4.00
307 308 2.490270 GATGCCAGTCAGCCCAGGTT 62.490 60.000 0.00 0.00 0.00 3.50
308 309 2.085343 ATGCCAGTCAGCCCAGGTTT 62.085 55.000 0.00 0.00 0.00 3.27
309 310 1.378762 GCCAGTCAGCCCAGGTTTA 59.621 57.895 0.00 0.00 0.00 2.01
310 311 0.034089 GCCAGTCAGCCCAGGTTTAT 60.034 55.000 0.00 0.00 0.00 1.40
311 312 1.211949 GCCAGTCAGCCCAGGTTTATA 59.788 52.381 0.00 0.00 0.00 0.98
312 313 2.746472 GCCAGTCAGCCCAGGTTTATAG 60.746 54.545 0.00 0.00 0.00 1.31
313 314 2.158755 CCAGTCAGCCCAGGTTTATAGG 60.159 54.545 0.00 0.00 0.00 2.57
314 315 2.771943 CAGTCAGCCCAGGTTTATAGGA 59.228 50.000 0.00 0.00 0.00 2.94
315 316 2.772515 AGTCAGCCCAGGTTTATAGGAC 59.227 50.000 0.00 0.00 0.00 3.85
316 317 2.124411 TCAGCCCAGGTTTATAGGACC 58.876 52.381 0.30 0.30 37.44 4.46
317 318 1.129058 AGCCCAGGTTTATAGGACCG 58.871 55.000 2.70 0.00 42.11 4.79
318 319 0.108019 GCCCAGGTTTATAGGACCGG 59.892 60.000 0.00 0.00 42.11 5.28
319 320 1.503800 CCCAGGTTTATAGGACCGGT 58.496 55.000 6.92 6.92 42.11 5.28
320 321 2.681422 CCCAGGTTTATAGGACCGGTA 58.319 52.381 7.34 0.00 42.11 4.02
321 322 3.245441 CCCAGGTTTATAGGACCGGTAT 58.755 50.000 7.34 0.96 42.11 2.73
322 323 4.419282 CCCAGGTTTATAGGACCGGTATA 58.581 47.826 7.34 3.85 42.11 1.47
323 324 4.840115 CCCAGGTTTATAGGACCGGTATAA 59.160 45.833 7.34 5.52 42.11 0.98
324 325 5.046807 CCCAGGTTTATAGGACCGGTATAAG 60.047 48.000 7.34 0.00 42.11 1.73
325 326 5.776716 CCAGGTTTATAGGACCGGTATAAGA 59.223 44.000 7.34 0.00 42.11 2.10
326 327 6.071503 CCAGGTTTATAGGACCGGTATAAGAG 60.072 46.154 7.34 0.20 42.11 2.85
327 328 6.015282 AGGTTTATAGGACCGGTATAAGAGG 58.985 44.000 7.34 0.00 42.11 3.69
328 329 5.337089 GGTTTATAGGACCGGTATAAGAGGC 60.337 48.000 7.34 0.00 0.00 4.70
329 330 1.901591 TAGGACCGGTATAAGAGGCG 58.098 55.000 7.34 0.00 0.00 5.52
330 331 1.006454 GGACCGGTATAAGAGGCGC 60.006 63.158 7.34 0.00 0.00 6.53
331 332 1.371389 GACCGGTATAAGAGGCGCG 60.371 63.158 7.34 0.00 0.00 6.86
332 333 2.733593 CCGGTATAAGAGGCGCGC 60.734 66.667 25.94 25.94 0.00 6.86
333 334 2.733593 CGGTATAAGAGGCGCGCC 60.734 66.667 42.34 42.34 0.00 6.53
334 335 2.357154 GGTATAAGAGGCGCGCCC 60.357 66.667 44.47 34.01 36.58 6.13
335 336 2.733593 GTATAAGAGGCGCGCCCG 60.734 66.667 44.47 0.00 39.21 6.13
336 337 3.221389 TATAAGAGGCGCGCCCGT 61.221 61.111 44.47 32.93 39.21 5.28
337 338 3.493830 TATAAGAGGCGCGCCCGTG 62.494 63.158 44.47 0.00 39.21 4.94
346 347 2.813908 GCGCCCGTGTCGAGATTT 60.814 61.111 0.00 0.00 0.00 2.17
347 348 2.388232 GCGCCCGTGTCGAGATTTT 61.388 57.895 0.00 0.00 0.00 1.82
348 349 1.419922 CGCCCGTGTCGAGATTTTG 59.580 57.895 0.00 0.00 0.00 2.44
349 350 1.134694 GCCCGTGTCGAGATTTTGC 59.865 57.895 0.00 0.00 0.00 3.68
350 351 1.419922 CCCGTGTCGAGATTTTGCG 59.580 57.895 0.00 0.00 0.00 4.85
351 352 1.419922 CCGTGTCGAGATTTTGCGG 59.580 57.895 0.00 0.00 0.00 5.69
352 353 1.225745 CGTGTCGAGATTTTGCGGC 60.226 57.895 0.00 0.00 0.00 6.53
353 354 1.866237 GTGTCGAGATTTTGCGGCA 59.134 52.632 0.00 0.00 40.09 5.69
354 355 1.866237 TGTCGAGATTTTGCGGCAC 59.134 52.632 0.05 0.00 37.19 5.01
355 356 0.602638 TGTCGAGATTTTGCGGCACT 60.603 50.000 0.05 0.00 37.19 4.40
356 357 0.179215 GTCGAGATTTTGCGGCACTG 60.179 55.000 0.05 0.00 31.48 3.66
357 358 0.320334 TCGAGATTTTGCGGCACTGA 60.320 50.000 0.05 0.00 0.00 3.41
358 359 0.179215 CGAGATTTTGCGGCACTGAC 60.179 55.000 0.05 0.00 0.00 3.51
359 360 0.169009 GAGATTTTGCGGCACTGACC 59.831 55.000 0.05 0.00 0.00 4.02
380 381 3.829044 CCGTCCGCCCGACATACA 61.829 66.667 0.06 0.00 42.07 2.29
381 382 2.278596 CGTCCGCCCGACATACAG 60.279 66.667 0.06 0.00 42.07 2.74
382 383 2.767445 CGTCCGCCCGACATACAGA 61.767 63.158 0.06 0.00 42.07 3.41
383 384 1.065928 GTCCGCCCGACATACAGAG 59.934 63.158 0.00 0.00 41.54 3.35
384 385 1.077285 TCCGCCCGACATACAGAGA 60.077 57.895 0.00 0.00 0.00 3.10
385 386 1.101635 TCCGCCCGACATACAGAGAG 61.102 60.000 0.00 0.00 0.00 3.20
386 387 1.299468 CGCCCGACATACAGAGAGC 60.299 63.158 0.00 0.00 0.00 4.09
387 388 1.299468 GCCCGACATACAGAGAGCG 60.299 63.158 0.00 0.00 0.00 5.03
388 389 1.299468 CCCGACATACAGAGAGCGC 60.299 63.158 0.00 0.00 0.00 5.92
389 390 1.729470 CCCGACATACAGAGAGCGCT 61.729 60.000 11.27 11.27 0.00 5.92
390 391 0.317436 CCGACATACAGAGAGCGCTC 60.317 60.000 30.01 30.01 41.62 5.03
391 392 0.655915 CGACATACAGAGAGCGCTCG 60.656 60.000 30.39 19.37 45.98 5.03
392 393 0.658368 GACATACAGAGAGCGCTCGA 59.342 55.000 30.39 15.39 45.98 4.04
393 394 0.660488 ACATACAGAGAGCGCTCGAG 59.340 55.000 30.39 24.61 45.98 4.04
394 395 0.040514 CATACAGAGAGCGCTCGAGG 60.041 60.000 30.39 24.02 45.98 4.63
395 396 0.179043 ATACAGAGAGCGCTCGAGGA 60.179 55.000 30.39 21.04 45.98 3.71
396 397 0.812014 TACAGAGAGCGCTCGAGGAG 60.812 60.000 30.39 20.98 45.98 3.69
397 398 2.112198 CAGAGAGCGCTCGAGGAGT 61.112 63.158 30.39 13.23 45.98 3.85
398 399 1.817941 AGAGAGCGCTCGAGGAGTC 60.818 63.158 30.39 20.98 45.98 3.36
399 400 1.817941 GAGAGCGCTCGAGGAGTCT 60.818 63.158 30.39 11.62 34.09 3.24
400 401 0.531090 GAGAGCGCTCGAGGAGTCTA 60.531 60.000 30.39 0.00 34.09 2.59
401 402 0.531974 AGAGCGCTCGAGGAGTCTAG 60.532 60.000 30.39 0.00 34.09 2.43
402 403 0.812412 GAGCGCTCGAGGAGTCTAGT 60.812 60.000 23.61 0.00 31.39 2.57
403 404 0.393267 AGCGCTCGAGGAGTCTAGTT 60.393 55.000 15.58 0.00 31.39 2.24
404 405 0.248296 GCGCTCGAGGAGTCTAGTTG 60.248 60.000 15.58 0.00 31.39 3.16
405 406 0.248296 CGCTCGAGGAGTCTAGTTGC 60.248 60.000 15.58 0.00 31.39 4.17
406 407 0.811915 GCTCGAGGAGTCTAGTTGCA 59.188 55.000 15.58 0.00 31.39 4.08
407 408 1.202245 GCTCGAGGAGTCTAGTTGCAG 60.202 57.143 15.58 0.00 31.39 4.41
408 409 2.360844 CTCGAGGAGTCTAGTTGCAGA 58.639 52.381 3.91 0.00 0.00 4.26
409 410 2.948979 CTCGAGGAGTCTAGTTGCAGAT 59.051 50.000 3.91 0.00 0.00 2.90
410 411 2.685388 TCGAGGAGTCTAGTTGCAGATG 59.315 50.000 0.00 0.00 0.00 2.90
411 412 2.797792 CGAGGAGTCTAGTTGCAGATGC 60.798 54.545 0.00 0.00 42.50 3.91
412 413 2.430332 GAGGAGTCTAGTTGCAGATGCT 59.570 50.000 6.35 0.00 42.66 3.79
413 414 2.836981 AGGAGTCTAGTTGCAGATGCTT 59.163 45.455 6.35 0.00 42.66 3.91
414 415 3.262915 AGGAGTCTAGTTGCAGATGCTTT 59.737 43.478 6.35 0.00 42.66 3.51
415 416 4.006319 GGAGTCTAGTTGCAGATGCTTTT 58.994 43.478 6.35 0.00 42.66 2.27
416 417 4.142730 GGAGTCTAGTTGCAGATGCTTTTG 60.143 45.833 6.35 0.00 42.66 2.44
427 428 2.418356 GCTTTTGCTGGCTGTGCA 59.582 55.556 0.00 0.00 43.35 4.57
428 429 1.952635 GCTTTTGCTGGCTGTGCAC 60.953 57.895 10.75 10.75 43.35 4.57
429 430 1.438399 CTTTTGCTGGCTGTGCACA 59.562 52.632 20.37 20.37 40.40 4.57
430 431 0.872881 CTTTTGCTGGCTGTGCACAC 60.873 55.000 17.42 12.88 40.40 3.82
431 432 2.610700 TTTTGCTGGCTGTGCACACG 62.611 55.000 17.42 13.34 40.40 4.49
432 433 4.854924 TGCTGGCTGTGCACACGT 62.855 61.111 17.42 0.00 35.31 4.49
433 434 4.318021 GCTGGCTGTGCACACGTG 62.318 66.667 17.42 15.48 0.00 4.49
434 435 2.588596 CTGGCTGTGCACACGTGA 60.589 61.111 25.01 0.00 0.00 4.35
435 436 2.124942 TGGCTGTGCACACGTGAA 60.125 55.556 25.01 4.23 0.00 3.18
436 437 2.109538 CTGGCTGTGCACACGTGAAG 62.110 60.000 25.01 15.23 0.00 3.02
437 438 2.633657 GCTGTGCACACGTGAAGG 59.366 61.111 25.01 12.22 0.00 3.46
438 439 2.633657 CTGTGCACACGTGAAGGC 59.366 61.111 25.01 21.54 0.00 4.35
439 440 2.124942 TGTGCACACGTGAAGGCA 60.125 55.556 25.01 23.80 0.00 4.75
450 451 2.627791 TGAAGGCACGTCATTGGTG 58.372 52.632 0.00 0.00 42.83 4.17
456 457 3.162499 CACGTCATTGGTGCACAAC 57.838 52.632 20.43 2.20 42.94 3.32
457 458 0.380024 CACGTCATTGGTGCACAACA 59.620 50.000 20.43 5.31 42.94 3.33
458 459 0.662619 ACGTCATTGGTGCACAACAG 59.337 50.000 20.43 5.71 42.94 3.16
459 460 0.662619 CGTCATTGGTGCACAACAGT 59.337 50.000 20.43 1.95 42.94 3.55
460 461 1.870402 CGTCATTGGTGCACAACAGTA 59.130 47.619 20.43 0.00 42.94 2.74
461 462 2.349438 CGTCATTGGTGCACAACAGTAC 60.349 50.000 20.43 8.16 42.94 2.73
462 463 2.878406 GTCATTGGTGCACAACAGTACT 59.122 45.455 20.43 0.00 42.94 2.73
463 464 4.062293 GTCATTGGTGCACAACAGTACTA 58.938 43.478 20.43 0.00 42.94 1.82
464 465 4.062293 TCATTGGTGCACAACAGTACTAC 58.938 43.478 20.43 0.00 42.94 2.73
465 466 3.830744 TTGGTGCACAACAGTACTACT 57.169 42.857 20.43 0.00 33.18 2.57
466 467 3.380479 TGGTGCACAACAGTACTACTC 57.620 47.619 20.43 0.00 0.00 2.59
467 468 2.036733 TGGTGCACAACAGTACTACTCC 59.963 50.000 20.43 0.00 0.00 3.85
468 469 2.612221 GGTGCACAACAGTACTACTCCC 60.612 54.545 20.43 0.00 0.00 4.30
469 470 2.299297 GTGCACAACAGTACTACTCCCT 59.701 50.000 13.17 0.00 0.00 4.20
470 471 2.561419 TGCACAACAGTACTACTCCCTC 59.439 50.000 0.00 0.00 0.00 4.30
471 472 2.094130 GCACAACAGTACTACTCCCTCC 60.094 54.545 0.00 0.00 0.00 4.30
472 473 2.163815 CACAACAGTACTACTCCCTCCG 59.836 54.545 0.00 0.00 0.00 4.63
473 474 2.224967 ACAACAGTACTACTCCCTCCGT 60.225 50.000 0.00 0.00 0.00 4.69
474 475 2.824341 CAACAGTACTACTCCCTCCGTT 59.176 50.000 0.00 0.00 0.00 4.44
475 476 2.720915 ACAGTACTACTCCCTCCGTTC 58.279 52.381 0.00 0.00 0.00 3.95
476 477 2.022934 CAGTACTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
477 478 1.637553 AGTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
478 479 2.042162 AGTACTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
479 480 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
480 481 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
481 482 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
482 483 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
483 484 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
484 485 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
485 486 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
486 487 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
487 488 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
488 489 3.332034 CCTCCGTTCCAAATTACTCGTT 58.668 45.455 0.00 0.00 0.00 3.85
489 490 3.124636 CCTCCGTTCCAAATTACTCGTTG 59.875 47.826 0.00 0.00 0.00 4.10
490 491 3.731089 TCCGTTCCAAATTACTCGTTGT 58.269 40.909 0.00 0.00 0.00 3.32
491 492 3.495377 TCCGTTCCAAATTACTCGTTGTG 59.505 43.478 0.00 0.00 0.00 3.33
492 493 3.364565 CCGTTCCAAATTACTCGTTGTGG 60.365 47.826 0.00 0.00 0.00 4.17
493 494 3.249080 CGTTCCAAATTACTCGTTGTGGT 59.751 43.478 0.00 0.00 0.00 4.16
494 495 4.260866 CGTTCCAAATTACTCGTTGTGGTT 60.261 41.667 0.00 0.00 0.00 3.67
495 496 5.584442 GTTCCAAATTACTCGTTGTGGTTT 58.416 37.500 0.00 0.00 0.00 3.27
496 497 5.838531 TCCAAATTACTCGTTGTGGTTTT 57.161 34.783 0.00 0.00 0.00 2.43
497 498 6.939132 TCCAAATTACTCGTTGTGGTTTTA 57.061 33.333 0.00 0.00 0.00 1.52
498 499 6.961576 TCCAAATTACTCGTTGTGGTTTTAG 58.038 36.000 0.00 0.00 0.00 1.85
499 500 6.543100 TCCAAATTACTCGTTGTGGTTTTAGT 59.457 34.615 0.00 0.00 0.00 2.24
500 501 7.067251 TCCAAATTACTCGTTGTGGTTTTAGTT 59.933 33.333 0.00 0.00 0.00 2.24
501 502 7.703197 CCAAATTACTCGTTGTGGTTTTAGTTT 59.297 33.333 0.00 0.00 0.00 2.66
502 503 9.719279 CAAATTACTCGTTGTGGTTTTAGTTTA 57.281 29.630 0.00 0.00 0.00 2.01
508 509 9.112725 ACTCGTTGTGGTTTTAGTTTAAATACT 57.887 29.630 0.00 0.00 0.00 2.12
531 532 4.698583 ACGTACTGCACTAGAAAGTAGG 57.301 45.455 15.67 15.67 37.95 3.18
573 574 1.119574 AGGGTTCGTGTACACCAGCT 61.120 55.000 20.11 4.75 34.36 4.24
574 575 0.604578 GGGTTCGTGTACACCAGCTA 59.395 55.000 20.11 0.00 34.36 3.32
575 576 1.403780 GGGTTCGTGTACACCAGCTAG 60.404 57.143 20.11 5.25 34.36 3.42
589 611 4.095483 CACCAGCTAGCTAGTTTTGGAATG 59.905 45.833 30.76 21.59 0.00 2.67
603 625 1.134694 GAATGCTGCCGGTTCGAAC 59.865 57.895 20.14 20.14 0.00 3.95
617 639 4.143389 CGGTTCGAACACATCAAGTAGTTC 60.143 45.833 28.24 6.05 36.14 3.01
618 640 4.151867 GGTTCGAACACATCAAGTAGTTCC 59.848 45.833 28.24 2.68 36.12 3.62
665 687 3.550030 CGCTTCTAAACAAGTTGGGTTGG 60.550 47.826 7.96 3.44 0.00 3.77
666 688 3.243737 GCTTCTAAACAAGTTGGGTTGGG 60.244 47.826 7.96 0.24 0.00 4.12
667 689 2.312390 TCTAAACAAGTTGGGTTGGGC 58.688 47.619 7.96 0.00 0.00 5.36
668 690 1.343142 CTAAACAAGTTGGGTTGGGCC 59.657 52.381 7.96 0.00 0.00 5.80
669 691 0.618968 AAACAAGTTGGGTTGGGCCA 60.619 50.000 0.00 0.00 39.65 5.36
758 900 1.392534 CTCACTCCCCTACCCACCT 59.607 63.158 0.00 0.00 0.00 4.00
763 914 2.444140 CCCCTACCCACCTCTCGG 60.444 72.222 0.00 0.00 0.00 4.63
788 939 1.405256 GCTCTATCCATCCATCCAGCG 60.405 57.143 0.00 0.00 0.00 5.18
798 949 4.263209 ATCCAGCGAGCGAGCGAG 62.263 66.667 1.41 0.00 43.00 5.03
805 956 4.167359 GAGCGAGCGAGCGACTGA 62.167 66.667 1.41 0.00 43.00 3.41
806 957 4.468615 AGCGAGCGAGCGACTGAC 62.469 66.667 1.41 0.00 43.00 3.51
808 959 4.838486 CGAGCGAGCGACTGACCC 62.838 72.222 0.00 0.00 0.00 4.46
809 960 4.838486 GAGCGAGCGACTGACCCG 62.838 72.222 0.00 0.00 0.00 5.28
950 1102 3.826822 CCACACCCACCCACCCAA 61.827 66.667 0.00 0.00 0.00 4.12
951 1108 2.525592 CACACCCACCCACCCAAT 59.474 61.111 0.00 0.00 0.00 3.16
977 1134 4.504916 CACTGCTCCCTCCGCTCG 62.505 72.222 0.00 0.00 0.00 5.03
979 1136 4.200283 CTGCTCCCTCCGCTCGTC 62.200 72.222 0.00 0.00 0.00 4.20
1125 1288 2.807045 GTGCTCGAGACGGTGCTG 60.807 66.667 18.75 0.00 0.00 4.41
1287 1450 3.049674 AACGCGCACCACATCCTG 61.050 61.111 5.73 0.00 0.00 3.86
1323 1486 1.627550 GCTTCGCCGACTTCAACCTC 61.628 60.000 0.00 0.00 0.00 3.85
1583 1746 1.325476 CCCTTCCATTCCAGCTTGCC 61.325 60.000 0.00 0.00 0.00 4.52
1586 1749 0.899717 TTCCATTCCAGCTTGCCACC 60.900 55.000 0.00 0.00 0.00 4.61
1588 1751 1.318158 CCATTCCAGCTTGCCACCTC 61.318 60.000 0.00 0.00 0.00 3.85
1591 1754 1.130054 TTCCAGCTTGCCACCTCTCT 61.130 55.000 0.00 0.00 0.00 3.10
1592 1755 1.130054 TCCAGCTTGCCACCTCTCTT 61.130 55.000 0.00 0.00 0.00 2.85
1593 1756 0.959372 CCAGCTTGCCACCTCTCTTG 60.959 60.000 0.00 0.00 0.00 3.02
1598 1761 0.035881 TTGCCACCTCTCTTGCTCAG 59.964 55.000 0.00 0.00 0.00 3.35
1599 1762 1.123861 TGCCACCTCTCTTGCTCAGT 61.124 55.000 0.00 0.00 0.00 3.41
1600 1763 0.898320 GCCACCTCTCTTGCTCAGTA 59.102 55.000 0.00 0.00 0.00 2.74
1602 1765 2.093235 GCCACCTCTCTTGCTCAGTAAT 60.093 50.000 0.00 0.00 0.00 1.89
1603 1766 3.529533 CCACCTCTCTTGCTCAGTAATG 58.470 50.000 0.00 0.00 0.00 1.90
1604 1767 3.529533 CACCTCTCTTGCTCAGTAATGG 58.470 50.000 0.00 0.00 0.00 3.16
1605 1768 3.196469 CACCTCTCTTGCTCAGTAATGGA 59.804 47.826 0.00 0.00 0.00 3.41
1626 1811 9.823647 AATGGATTAATAGCGTATCTCTATTGG 57.176 33.333 5.73 0.00 37.33 3.16
1627 1812 8.362464 TGGATTAATAGCGTATCTCTATTGGT 57.638 34.615 5.73 0.00 37.33 3.67
1634 1819 5.116882 AGCGTATCTCTATTGGTTGGTTTC 58.883 41.667 0.00 0.00 0.00 2.78
2071 2258 3.430862 CCGACCATTGCCACGGTG 61.431 66.667 0.00 0.00 40.42 4.94
2125 2312 2.347490 CCTGTCAACCCCGACCAG 59.653 66.667 0.00 0.00 34.88 4.00
2353 2542 3.371097 ATTGGACGCGCACGAGGAT 62.371 57.895 5.73 0.00 43.93 3.24
2482 2671 1.968017 CATGTCGCACAACTGCCCT 60.968 57.895 0.00 0.00 40.73 5.19
2486 2675 3.730761 CGCACAACTGCCCTGAGC 61.731 66.667 0.00 0.00 40.73 4.26
2503 2692 2.328099 GCTGAAGGTGTTCCGGCTG 61.328 63.158 0.00 0.00 39.05 4.85
2948 3137 2.254703 GACAGACGGCGTCGACATCT 62.255 60.000 31.59 12.78 37.67 2.90
3075 3264 2.681976 GCATCCCATGTAGCAAGACAGT 60.682 50.000 0.00 0.00 31.51 3.55
3078 3267 2.168521 TCCCATGTAGCAAGACAGTAGC 59.831 50.000 0.00 0.00 31.51 3.58
3147 3337 4.613622 GCCATTGTTGTTGTAGTAGCTGTG 60.614 45.833 0.00 0.00 0.00 3.66
3148 3338 4.515191 CCATTGTTGTTGTAGTAGCTGTGT 59.485 41.667 0.00 0.00 0.00 3.72
3221 3416 1.821332 GCATGCTTCTTCGAGGGGG 60.821 63.158 11.37 0.00 0.00 5.40
3235 3430 2.885113 GGGGGCTTCATCAAACGC 59.115 61.111 0.00 0.00 0.00 4.84
3236 3431 2.710902 GGGGGCTTCATCAAACGCC 61.711 63.158 0.00 0.00 41.75 5.68
3252 3447 1.081175 GCCGCTTCCTCAGTTTTGC 60.081 57.895 0.00 0.00 0.00 3.68
3281 3484 3.322318 GAGAGGCCGCCTTCTGCTT 62.322 63.158 14.70 0.00 38.05 3.91
3308 3531 0.818040 GCGGCGATGGTTTCCCTAAT 60.818 55.000 12.98 0.00 0.00 1.73
3493 3735 4.903054 TGTCTCAAGCTTTGTGATCTGAT 58.097 39.130 0.00 0.00 35.84 2.90
3494 3736 4.694037 TGTCTCAAGCTTTGTGATCTGATG 59.306 41.667 0.00 0.00 35.84 3.07
3495 3737 4.934001 GTCTCAAGCTTTGTGATCTGATGA 59.066 41.667 0.00 0.00 35.84 2.92
3496 3738 5.410746 GTCTCAAGCTTTGTGATCTGATGAA 59.589 40.000 0.00 0.00 35.84 2.57
3497 3739 6.093771 GTCTCAAGCTTTGTGATCTGATGAAT 59.906 38.462 0.00 0.00 35.84 2.57
3498 3740 6.093633 TCTCAAGCTTTGTGATCTGATGAATG 59.906 38.462 0.00 0.00 0.00 2.67
3499 3741 5.708697 TCAAGCTTTGTGATCTGATGAATGT 59.291 36.000 0.00 0.00 0.00 2.71
3500 3742 5.814764 AGCTTTGTGATCTGATGAATGTC 57.185 39.130 0.00 0.00 0.00 3.06
3501 3743 4.639310 AGCTTTGTGATCTGATGAATGTCC 59.361 41.667 0.00 0.00 0.00 4.02
3502 3744 4.397103 GCTTTGTGATCTGATGAATGTCCA 59.603 41.667 0.00 0.00 0.00 4.02
3503 3745 5.067413 GCTTTGTGATCTGATGAATGTCCAT 59.933 40.000 0.00 0.00 0.00 3.41
3504 3746 6.688637 TTTGTGATCTGATGAATGTCCATC 57.311 37.500 0.00 0.00 42.38 3.51
3551 3793 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
3554 3796 2.993008 GGCCTCTGCATCTGGTCA 59.007 61.111 0.00 0.00 40.13 4.02
3641 3885 1.971167 GCCACCATCTTCGCAACCA 60.971 57.895 0.00 0.00 0.00 3.67
3726 3970 1.812571 CTCGCAGCCAAACCTAACATT 59.187 47.619 0.00 0.00 0.00 2.71
4005 4249 1.152963 AGCCGCCGCCAAGAATATT 60.153 52.632 0.00 0.00 34.57 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.096628 AGCTCAACGTCTACGCGTAG 59.903 55.000 34.93 34.93 45.00 3.51
21 22 0.095935 GAGCTCAACGTCTACGCGTA 59.904 55.000 19.40 19.40 45.00 4.42
23 24 1.868251 GGAGCTCAACGTCTACGCG 60.868 63.158 17.19 3.53 44.43 6.01
24 25 1.868251 CGGAGCTCAACGTCTACGC 60.868 63.158 17.19 0.00 44.43 4.42
25 26 0.247735 CTCGGAGCTCAACGTCTACG 60.248 60.000 17.19 7.23 46.33 3.51
26 27 0.523757 GCTCGGAGCTCAACGTCTAC 60.524 60.000 22.32 0.00 38.45 2.59
27 28 1.801332 GCTCGGAGCTCAACGTCTA 59.199 57.895 22.32 0.00 38.45 2.59
28 29 2.569134 GCTCGGAGCTCAACGTCT 59.431 61.111 22.32 0.00 38.45 4.18
38 39 4.441695 TCCGCTTGCAGCTCGGAG 62.442 66.667 18.08 0.00 46.12 4.63
40 41 3.570638 CATCCGCTTGCAGCTCGG 61.571 66.667 14.65 14.65 44.16 4.63
41 42 3.570638 CCATCCGCTTGCAGCTCG 61.571 66.667 0.00 2.66 39.60 5.03
42 43 3.207669 CCCATCCGCTTGCAGCTC 61.208 66.667 0.00 0.00 39.60 4.09
43 44 4.809496 CCCCATCCGCTTGCAGCT 62.809 66.667 0.00 0.00 39.60 4.24
64 65 4.506255 CATTCCCCTCCACCCCGC 62.506 72.222 0.00 0.00 0.00 6.13
65 66 3.015145 ACATTCCCCTCCACCCCG 61.015 66.667 0.00 0.00 0.00 5.73
66 67 1.926426 CTCACATTCCCCTCCACCCC 61.926 65.000 0.00 0.00 0.00 4.95
67 68 1.208165 ACTCACATTCCCCTCCACCC 61.208 60.000 0.00 0.00 0.00 4.61
68 69 0.035056 CACTCACATTCCCCTCCACC 60.035 60.000 0.00 0.00 0.00 4.61
69 70 0.693049 ACACTCACATTCCCCTCCAC 59.307 55.000 0.00 0.00 0.00 4.02
70 71 0.692476 CACACTCACATTCCCCTCCA 59.308 55.000 0.00 0.00 0.00 3.86
71 72 0.984230 TCACACTCACATTCCCCTCC 59.016 55.000 0.00 0.00 0.00 4.30
72 73 1.625818 AGTCACACTCACATTCCCCTC 59.374 52.381 0.00 0.00 0.00 4.30
73 74 1.734655 AGTCACACTCACATTCCCCT 58.265 50.000 0.00 0.00 0.00 4.79
74 75 2.093447 CCTAGTCACACTCACATTCCCC 60.093 54.545 0.00 0.00 0.00 4.81
75 76 2.093447 CCCTAGTCACACTCACATTCCC 60.093 54.545 0.00 0.00 0.00 3.97
76 77 2.567615 ACCCTAGTCACACTCACATTCC 59.432 50.000 0.00 0.00 0.00 3.01
77 78 3.963428 ACCCTAGTCACACTCACATTC 57.037 47.619 0.00 0.00 0.00 2.67
78 79 3.306088 CGAACCCTAGTCACACTCACATT 60.306 47.826 0.00 0.00 0.00 2.71
79 80 2.231478 CGAACCCTAGTCACACTCACAT 59.769 50.000 0.00 0.00 0.00 3.21
80 81 1.611977 CGAACCCTAGTCACACTCACA 59.388 52.381 0.00 0.00 0.00 3.58
81 82 1.884579 TCGAACCCTAGTCACACTCAC 59.115 52.381 0.00 0.00 0.00 3.51
82 83 2.160205 CTCGAACCCTAGTCACACTCA 58.840 52.381 0.00 0.00 0.00 3.41
83 84 1.473278 CCTCGAACCCTAGTCACACTC 59.527 57.143 0.00 0.00 0.00 3.51
84 85 1.203025 ACCTCGAACCCTAGTCACACT 60.203 52.381 0.00 0.00 0.00 3.55
85 86 1.254954 ACCTCGAACCCTAGTCACAC 58.745 55.000 0.00 0.00 0.00 3.82
86 87 1.616865 CAACCTCGAACCCTAGTCACA 59.383 52.381 0.00 0.00 0.00 3.58
87 88 1.672145 GCAACCTCGAACCCTAGTCAC 60.672 57.143 0.00 0.00 0.00 3.67
88 89 0.606604 GCAACCTCGAACCCTAGTCA 59.393 55.000 0.00 0.00 0.00 3.41
89 90 0.108281 GGCAACCTCGAACCCTAGTC 60.108 60.000 0.00 0.00 0.00 2.59
90 91 1.885163 CGGCAACCTCGAACCCTAGT 61.885 60.000 0.00 0.00 0.00 2.57
91 92 1.153628 CGGCAACCTCGAACCCTAG 60.154 63.158 0.00 0.00 0.00 3.02
92 93 1.880819 GACGGCAACCTCGAACCCTA 61.881 60.000 0.00 0.00 0.00 3.53
93 94 3.236003 GACGGCAACCTCGAACCCT 62.236 63.158 0.00 0.00 0.00 4.34
94 95 2.741211 GACGGCAACCTCGAACCC 60.741 66.667 0.00 0.00 0.00 4.11
95 96 2.741211 GGACGGCAACCTCGAACC 60.741 66.667 0.00 0.00 0.00 3.62
96 97 3.110178 CGGACGGCAACCTCGAAC 61.110 66.667 0.00 0.00 0.00 3.95
97 98 3.296836 TCGGACGGCAACCTCGAA 61.297 61.111 0.00 0.00 0.00 3.71
98 99 4.047059 GTCGGACGGCAACCTCGA 62.047 66.667 0.00 0.00 0.00 4.04
99 100 2.203972 TAAGTCGGACGGCAACCTCG 62.204 60.000 1.89 0.00 0.00 4.63
100 101 0.037975 TTAAGTCGGACGGCAACCTC 60.038 55.000 1.89 0.00 0.00 3.85
101 102 0.393820 TTTAAGTCGGACGGCAACCT 59.606 50.000 1.89 0.00 0.00 3.50
102 103 1.445871 ATTTAAGTCGGACGGCAACC 58.554 50.000 1.89 0.00 0.00 3.77
103 104 2.030091 GCTATTTAAGTCGGACGGCAAC 59.970 50.000 1.89 0.00 0.00 4.17
104 105 2.273557 GCTATTTAAGTCGGACGGCAA 58.726 47.619 1.89 0.00 0.00 4.52
105 106 1.472026 GGCTATTTAAGTCGGACGGCA 60.472 52.381 1.89 0.00 0.00 5.69
106 107 1.215244 GGCTATTTAAGTCGGACGGC 58.785 55.000 1.89 0.00 0.00 5.68
113 114 4.275196 GGACCAAATCCGGCTATTTAAGTC 59.725 45.833 15.66 15.66 37.88 3.01
114 115 4.204799 GGACCAAATCCGGCTATTTAAGT 58.795 43.478 0.00 0.00 37.88 2.24
115 116 4.830826 GGACCAAATCCGGCTATTTAAG 57.169 45.455 0.00 0.00 37.88 1.85
127 128 1.890174 CCGCCAAAGGGACCAAATC 59.110 57.895 0.00 0.00 35.59 2.17
128 129 2.282783 GCCGCCAAAGGGACCAAAT 61.283 57.895 0.00 0.00 35.59 2.32
129 130 2.915137 GCCGCCAAAGGGACCAAA 60.915 61.111 0.00 0.00 35.59 3.28
146 147 3.692367 GAATGACGATCCGGCGCG 61.692 66.667 13.17 13.17 37.93 6.86
147 148 2.279517 AGAATGACGATCCGGCGC 60.280 61.111 0.00 0.00 37.93 6.53
148 149 1.065764 TGAGAATGACGATCCGGCG 59.934 57.895 0.00 0.00 37.93 6.46
149 150 0.876342 GGTGAGAATGACGATCCGGC 60.876 60.000 0.00 0.00 34.27 6.13
150 151 0.459899 TGGTGAGAATGACGATCCGG 59.540 55.000 0.00 0.00 0.00 5.14
151 152 1.405463 TCTGGTGAGAATGACGATCCG 59.595 52.381 0.00 0.00 0.00 4.18
152 153 2.482142 GGTCTGGTGAGAATGACGATCC 60.482 54.545 0.00 0.00 0.00 3.36
153 154 2.796383 CGGTCTGGTGAGAATGACGATC 60.796 54.545 0.00 0.00 0.00 3.69
154 155 1.135139 CGGTCTGGTGAGAATGACGAT 59.865 52.381 0.00 0.00 0.00 3.73
155 156 0.526211 CGGTCTGGTGAGAATGACGA 59.474 55.000 0.00 0.00 0.00 4.20
156 157 1.078759 GCGGTCTGGTGAGAATGACG 61.079 60.000 0.00 0.00 0.00 4.35
157 158 0.741221 GGCGGTCTGGTGAGAATGAC 60.741 60.000 0.00 0.00 0.00 3.06
158 159 1.596934 GGCGGTCTGGTGAGAATGA 59.403 57.895 0.00 0.00 0.00 2.57
159 160 1.811266 CGGCGGTCTGGTGAGAATG 60.811 63.158 0.00 0.00 0.00 2.67
160 161 1.949847 CTCGGCGGTCTGGTGAGAAT 61.950 60.000 7.21 0.00 0.00 2.40
161 162 2.599281 TCGGCGGTCTGGTGAGAA 60.599 61.111 7.21 0.00 0.00 2.87
162 163 3.062466 CTCGGCGGTCTGGTGAGA 61.062 66.667 7.21 0.00 0.00 3.27
163 164 2.436087 AAACTCGGCGGTCTGGTGAG 62.436 60.000 7.21 0.00 0.00 3.51
164 165 1.180456 TAAACTCGGCGGTCTGGTGA 61.180 55.000 7.21 0.00 0.00 4.02
165 166 1.012486 GTAAACTCGGCGGTCTGGTG 61.012 60.000 7.21 0.00 0.00 4.17
166 167 1.291272 GTAAACTCGGCGGTCTGGT 59.709 57.895 7.21 0.00 0.00 4.00
167 168 0.108329 ATGTAAACTCGGCGGTCTGG 60.108 55.000 7.21 0.00 0.00 3.86
168 169 0.999406 CATGTAAACTCGGCGGTCTG 59.001 55.000 7.21 0.00 0.00 3.51
169 170 0.108329 CCATGTAAACTCGGCGGTCT 60.108 55.000 7.21 0.00 0.00 3.85
170 171 1.087771 CCCATGTAAACTCGGCGGTC 61.088 60.000 7.21 0.00 0.00 4.79
171 172 1.078708 CCCATGTAAACTCGGCGGT 60.079 57.895 7.21 0.19 0.00 5.68
172 173 1.078708 ACCCATGTAAACTCGGCGG 60.079 57.895 7.21 0.00 0.00 6.13
173 174 0.672401 ACACCCATGTAAACTCGGCG 60.672 55.000 0.00 0.00 37.26 6.46
174 175 1.467342 GAACACCCATGTAAACTCGGC 59.533 52.381 0.00 0.00 38.45 5.54
175 176 1.730064 CGAACACCCATGTAAACTCGG 59.270 52.381 0.00 0.00 38.45 4.63
176 177 1.127951 GCGAACACCCATGTAAACTCG 59.872 52.381 0.00 0.00 38.45 4.18
177 178 1.467342 GGCGAACACCCATGTAAACTC 59.533 52.381 0.00 0.00 38.45 3.01
178 179 1.073284 AGGCGAACACCCATGTAAACT 59.927 47.619 0.00 0.00 38.45 2.66
179 180 1.530323 AGGCGAACACCCATGTAAAC 58.470 50.000 0.00 0.00 38.45 2.01
180 181 2.355310 CCTAGGCGAACACCCATGTAAA 60.355 50.000 0.00 0.00 38.45 2.01
181 182 1.208535 CCTAGGCGAACACCCATGTAA 59.791 52.381 0.00 0.00 38.45 2.41
182 183 0.828022 CCTAGGCGAACACCCATGTA 59.172 55.000 0.00 0.00 38.45 2.29
183 184 1.198759 ACCTAGGCGAACACCCATGT 61.199 55.000 9.30 0.00 42.46 3.21
184 185 0.462047 GACCTAGGCGAACACCCATG 60.462 60.000 9.30 0.00 0.00 3.66
185 186 1.623542 GGACCTAGGCGAACACCCAT 61.624 60.000 9.30 0.00 0.00 4.00
186 187 2.288025 GGACCTAGGCGAACACCCA 61.288 63.158 9.30 0.00 0.00 4.51
187 188 1.988406 AGGACCTAGGCGAACACCC 60.988 63.158 9.30 0.00 0.00 4.61
188 189 1.218316 CAGGACCTAGGCGAACACC 59.782 63.158 9.30 3.29 0.00 4.16
189 190 1.448013 GCAGGACCTAGGCGAACAC 60.448 63.158 9.30 0.00 0.00 3.32
190 191 1.911269 TGCAGGACCTAGGCGAACA 60.911 57.895 9.30 0.00 0.00 3.18
191 192 1.448013 GTGCAGGACCTAGGCGAAC 60.448 63.158 9.30 0.00 0.00 3.95
192 193 2.978824 GTGCAGGACCTAGGCGAA 59.021 61.111 9.30 0.00 0.00 4.70
193 194 3.449227 CGTGCAGGACCTAGGCGA 61.449 66.667 9.30 0.00 0.00 5.54
195 196 4.840005 GGCGTGCAGGACCTAGGC 62.840 72.222 9.30 1.17 0.00 3.93
196 197 3.376935 CTGGCGTGCAGGACCTAGG 62.377 68.421 10.29 7.41 0.00 3.02
197 198 2.185350 CTGGCGTGCAGGACCTAG 59.815 66.667 10.29 0.00 0.00 3.02
198 199 2.603473 ACTGGCGTGCAGGACCTA 60.603 61.111 10.29 0.00 0.00 3.08
199 200 4.008933 GACTGGCGTGCAGGACCT 62.009 66.667 10.29 0.00 0.00 3.85
200 201 4.008933 AGACTGGCGTGCAGGACC 62.009 66.667 10.29 10.97 0.00 4.46
201 202 2.513026 ATCAGACTGGCGTGCAGGAC 62.513 60.000 11.29 8.23 0.00 3.85
202 203 2.285773 ATCAGACTGGCGTGCAGGA 61.286 57.895 11.29 0.00 0.00 3.86
203 204 2.104859 CATCAGACTGGCGTGCAGG 61.105 63.158 1.81 1.01 0.00 4.85
204 205 1.375140 ACATCAGACTGGCGTGCAG 60.375 57.895 1.81 0.00 0.00 4.41
205 206 1.668793 CACATCAGACTGGCGTGCA 60.669 57.895 1.81 0.00 0.00 4.57
206 207 2.393768 CCACATCAGACTGGCGTGC 61.394 63.158 15.70 0.00 0.00 5.34
207 208 2.393768 GCCACATCAGACTGGCGTG 61.394 63.158 14.69 14.69 43.56 5.34
208 209 2.046892 GCCACATCAGACTGGCGT 60.047 61.111 1.81 0.00 43.56 5.68
211 212 1.448540 GTCCGCCACATCAGACTGG 60.449 63.158 1.81 0.00 0.00 4.00
212 213 1.807165 CGTCCGCCACATCAGACTG 60.807 63.158 0.00 0.00 0.00 3.51
213 214 2.276116 ACGTCCGCCACATCAGACT 61.276 57.895 0.00 0.00 0.00 3.24
214 215 2.094659 CACGTCCGCCACATCAGAC 61.095 63.158 0.00 0.00 0.00 3.51
215 216 2.261361 CACGTCCGCCACATCAGA 59.739 61.111 0.00 0.00 0.00 3.27
216 217 2.048222 ACACGTCCGCCACATCAG 60.048 61.111 0.00 0.00 0.00 2.90
217 218 2.356913 CACACGTCCGCCACATCA 60.357 61.111 0.00 0.00 0.00 3.07
218 219 3.788766 GCACACGTCCGCCACATC 61.789 66.667 0.00 0.00 0.00 3.06
219 220 4.314440 AGCACACGTCCGCCACAT 62.314 61.111 2.17 0.00 0.00 3.21
221 222 4.961511 TCAGCACACGTCCGCCAC 62.962 66.667 2.17 0.00 0.00 5.01
222 223 4.961511 GTCAGCACACGTCCGCCA 62.962 66.667 2.17 0.00 0.00 5.69
227 228 2.867091 AAACGCGTCAGCACACGTC 61.867 57.895 14.44 1.76 40.38 4.34
228 229 2.888534 AAACGCGTCAGCACACGT 60.889 55.556 14.44 0.00 43.07 4.49
229 230 2.423517 CAAACGCGTCAGCACACG 60.424 61.111 14.44 3.22 45.49 4.49
230 231 2.052237 CCAAACGCGTCAGCACAC 60.052 61.111 14.44 0.00 45.49 3.82
231 232 3.276091 CCCAAACGCGTCAGCACA 61.276 61.111 14.44 0.00 45.49 4.57
232 233 4.683334 GCCCAAACGCGTCAGCAC 62.683 66.667 14.44 0.00 45.49 4.40
235 236 3.423154 GAGGCCCAAACGCGTCAG 61.423 66.667 14.44 8.23 41.99 3.51
237 238 4.699522 AGGAGGCCCAAACGCGTC 62.700 66.667 14.44 0.00 41.74 5.19
238 239 4.699522 GAGGAGGCCCAAACGCGT 62.700 66.667 5.58 5.58 33.88 6.01
241 242 3.976701 ATGCGAGGAGGCCCAAACG 62.977 63.158 0.00 1.90 33.88 3.60
242 243 2.044946 ATGCGAGGAGGCCCAAAC 60.045 61.111 0.00 0.00 33.88 2.93
243 244 2.272146 GATGCGAGGAGGCCCAAA 59.728 61.111 0.00 0.00 33.88 3.28
244 245 3.797353 GGATGCGAGGAGGCCCAA 61.797 66.667 0.00 0.00 33.88 4.12
253 254 1.892819 ATATCTGGGGCGGATGCGAG 61.893 60.000 12.10 0.00 44.10 5.03
254 255 1.913262 ATATCTGGGGCGGATGCGA 60.913 57.895 12.10 0.00 44.10 5.10
255 256 1.742880 CATATCTGGGGCGGATGCG 60.743 63.158 0.65 0.65 44.10 4.73
256 257 1.377725 CCATATCTGGGGCGGATGC 60.378 63.158 0.00 0.00 39.04 3.91
265 266 0.243907 CGTACTCGGCCCATATCTGG 59.756 60.000 0.00 0.00 42.73 3.86
266 267 1.200252 CTCGTACTCGGCCCATATCTG 59.800 57.143 0.00 0.00 37.69 2.90
267 268 1.535833 CTCGTACTCGGCCCATATCT 58.464 55.000 0.00 0.00 37.69 1.98
268 269 0.526662 CCTCGTACTCGGCCCATATC 59.473 60.000 0.00 0.00 37.69 1.63
269 270 0.898789 CCCTCGTACTCGGCCCATAT 60.899 60.000 0.00 0.00 37.69 1.78
270 271 1.529948 CCCTCGTACTCGGCCCATA 60.530 63.158 0.00 0.00 37.69 2.74
271 272 2.658321 ATCCCTCGTACTCGGCCCAT 62.658 60.000 0.00 0.00 37.69 4.00
272 273 3.369410 ATCCCTCGTACTCGGCCCA 62.369 63.158 0.00 0.00 37.69 5.36
273 274 2.521224 ATCCCTCGTACTCGGCCC 60.521 66.667 0.00 0.00 37.69 5.80
274 275 2.728817 CATCCCTCGTACTCGGCC 59.271 66.667 0.00 0.00 37.69 6.13
275 276 2.027751 GCATCCCTCGTACTCGGC 59.972 66.667 0.00 0.00 37.69 5.54
276 277 2.076622 CTGGCATCCCTCGTACTCGG 62.077 65.000 0.00 0.00 37.69 4.63
277 278 1.360551 CTGGCATCCCTCGTACTCG 59.639 63.158 0.00 0.00 38.55 4.18
278 279 0.386113 GACTGGCATCCCTCGTACTC 59.614 60.000 0.00 0.00 0.00 2.59
279 280 0.324368 TGACTGGCATCCCTCGTACT 60.324 55.000 0.00 0.00 0.00 2.73
280 281 0.103208 CTGACTGGCATCCCTCGTAC 59.897 60.000 0.00 0.00 0.00 3.67
281 282 1.676678 GCTGACTGGCATCCCTCGTA 61.677 60.000 0.00 0.00 0.00 3.43
282 283 3.023949 GCTGACTGGCATCCCTCGT 62.024 63.158 0.00 0.00 0.00 4.18
283 284 2.202987 GCTGACTGGCATCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
284 285 2.191641 GGCTGACTGGCATCCCTC 59.808 66.667 0.00 0.00 41.37 4.30
287 288 2.124403 CTGGGCTGACTGGCATCC 60.124 66.667 8.16 0.00 43.83 3.51
288 289 2.124403 CCTGGGCTGACTGGCATC 60.124 66.667 8.16 0.00 43.83 3.91
289 290 2.085343 AAACCTGGGCTGACTGGCAT 62.085 55.000 8.16 0.00 43.83 4.40
290 291 1.422977 TAAACCTGGGCTGACTGGCA 61.423 55.000 8.16 0.00 43.83 4.92
291 292 0.034089 ATAAACCTGGGCTGACTGGC 60.034 55.000 0.00 0.00 40.96 4.85
292 293 2.158755 CCTATAAACCTGGGCTGACTGG 60.159 54.545 0.00 0.00 35.76 4.00
293 294 2.771943 TCCTATAAACCTGGGCTGACTG 59.228 50.000 0.00 0.00 0.00 3.51
294 295 2.772515 GTCCTATAAACCTGGGCTGACT 59.227 50.000 0.00 0.00 0.00 3.41
295 296 2.158798 GGTCCTATAAACCTGGGCTGAC 60.159 54.545 0.00 0.00 33.78 3.51
296 297 2.124411 GGTCCTATAAACCTGGGCTGA 58.876 52.381 0.00 0.00 33.78 4.26
297 298 1.202651 CGGTCCTATAAACCTGGGCTG 60.203 57.143 0.00 0.00 34.45 4.85
298 299 1.129058 CGGTCCTATAAACCTGGGCT 58.871 55.000 0.00 0.00 34.45 5.19
299 300 0.108019 CCGGTCCTATAAACCTGGGC 59.892 60.000 0.00 0.00 34.45 5.36
300 301 1.503800 ACCGGTCCTATAAACCTGGG 58.496 55.000 0.00 7.52 35.85 4.45
301 302 5.776716 TCTTATACCGGTCCTATAAACCTGG 59.223 44.000 12.40 0.00 36.87 4.45
302 303 6.071503 CCTCTTATACCGGTCCTATAAACCTG 60.072 46.154 12.40 0.00 34.45 4.00
303 304 6.015282 CCTCTTATACCGGTCCTATAAACCT 58.985 44.000 12.40 0.00 34.45 3.50
304 305 5.337089 GCCTCTTATACCGGTCCTATAAACC 60.337 48.000 12.40 0.00 0.00 3.27
305 306 5.620879 CGCCTCTTATACCGGTCCTATAAAC 60.621 48.000 12.40 0.00 0.00 2.01
306 307 4.460382 CGCCTCTTATACCGGTCCTATAAA 59.540 45.833 12.40 0.00 0.00 1.40
307 308 4.012374 CGCCTCTTATACCGGTCCTATAA 58.988 47.826 12.40 9.38 0.00 0.98
308 309 3.614092 CGCCTCTTATACCGGTCCTATA 58.386 50.000 12.40 0.00 0.00 1.31
309 310 2.444421 CGCCTCTTATACCGGTCCTAT 58.556 52.381 12.40 0.73 0.00 2.57
310 311 1.901591 CGCCTCTTATACCGGTCCTA 58.098 55.000 12.40 0.47 0.00 2.94
311 312 1.461911 GCGCCTCTTATACCGGTCCT 61.462 60.000 12.40 1.70 0.00 3.85
312 313 1.006454 GCGCCTCTTATACCGGTCC 60.006 63.158 12.40 0.00 0.00 4.46
313 314 1.371389 CGCGCCTCTTATACCGGTC 60.371 63.158 12.40 0.00 0.00 4.79
314 315 2.726274 CGCGCCTCTTATACCGGT 59.274 61.111 13.98 13.98 0.00 5.28
315 316 2.733593 GCGCGCCTCTTATACCGG 60.734 66.667 23.24 0.00 0.00 5.28
316 317 2.733593 GGCGCGCCTCTTATACCG 60.734 66.667 41.71 0.00 0.00 4.02
317 318 2.357154 GGGCGCGCCTCTTATACC 60.357 66.667 45.23 25.20 36.10 2.73
318 319 2.733593 CGGGCGCGCCTCTTATAC 60.734 66.667 45.23 27.64 36.10 1.47
319 320 3.221389 ACGGGCGCGCCTCTTATA 61.221 61.111 45.23 0.00 36.10 0.98
320 321 4.891727 CACGGGCGCGCCTCTTAT 62.892 66.667 45.23 25.22 36.10 1.73
329 330 2.388232 AAAATCTCGACACGGGCGC 61.388 57.895 0.00 0.00 0.00 6.53
330 331 1.419922 CAAAATCTCGACACGGGCG 59.580 57.895 0.00 0.00 0.00 6.13
331 332 1.134694 GCAAAATCTCGACACGGGC 59.865 57.895 0.00 0.00 0.00 6.13
332 333 1.419922 CGCAAAATCTCGACACGGG 59.580 57.895 0.00 0.00 0.00 5.28
333 334 1.419922 CCGCAAAATCTCGACACGG 59.580 57.895 0.00 0.00 0.00 4.94
334 335 1.225745 GCCGCAAAATCTCGACACG 60.226 57.895 0.00 0.00 0.00 4.49
335 336 0.452784 GTGCCGCAAAATCTCGACAC 60.453 55.000 0.00 0.00 32.58 3.67
336 337 0.602638 AGTGCCGCAAAATCTCGACA 60.603 50.000 0.00 0.00 0.00 4.35
337 338 0.179215 CAGTGCCGCAAAATCTCGAC 60.179 55.000 0.00 0.00 0.00 4.20
338 339 0.320334 TCAGTGCCGCAAAATCTCGA 60.320 50.000 0.00 0.00 0.00 4.04
339 340 0.179215 GTCAGTGCCGCAAAATCTCG 60.179 55.000 0.00 0.00 0.00 4.04
340 341 0.169009 GGTCAGTGCCGCAAAATCTC 59.831 55.000 0.00 0.00 0.00 2.75
341 342 1.577328 CGGTCAGTGCCGCAAAATCT 61.577 55.000 12.02 0.00 45.47 2.40
342 343 1.154225 CGGTCAGTGCCGCAAAATC 60.154 57.895 12.02 0.00 45.47 2.17
343 344 2.953821 CGGTCAGTGCCGCAAAAT 59.046 55.556 12.02 0.00 45.47 1.82
365 366 1.065928 CTCTGTATGTCGGGCGGAC 59.934 63.158 17.34 17.34 46.27 4.79
366 367 1.077285 TCTCTGTATGTCGGGCGGA 60.077 57.895 0.00 0.00 0.00 5.54
367 368 1.360551 CTCTCTGTATGTCGGGCGG 59.639 63.158 0.00 0.00 0.00 6.13
368 369 1.299468 GCTCTCTGTATGTCGGGCG 60.299 63.158 0.00 0.00 0.00 6.13
369 370 1.299468 CGCTCTCTGTATGTCGGGC 60.299 63.158 0.00 0.00 0.00 6.13
370 371 1.299468 GCGCTCTCTGTATGTCGGG 60.299 63.158 0.00 0.00 0.00 5.14
371 372 0.317436 GAGCGCTCTCTGTATGTCGG 60.317 60.000 29.88 0.00 36.42 4.79
372 373 0.655915 CGAGCGCTCTCTGTATGTCG 60.656 60.000 32.88 14.46 37.19 4.35
373 374 0.658368 TCGAGCGCTCTCTGTATGTC 59.342 55.000 32.88 5.86 37.19 3.06
374 375 0.660488 CTCGAGCGCTCTCTGTATGT 59.340 55.000 32.88 0.00 37.19 2.29
375 376 0.040514 CCTCGAGCGCTCTCTGTATG 60.041 60.000 32.88 16.85 37.19 2.39
376 377 0.179043 TCCTCGAGCGCTCTCTGTAT 60.179 55.000 32.88 0.00 37.19 2.29
377 378 0.812014 CTCCTCGAGCGCTCTCTGTA 60.812 60.000 32.88 14.64 37.19 2.74
378 379 2.045829 TCCTCGAGCGCTCTCTGT 60.046 61.111 32.88 0.00 37.19 3.41
379 380 2.047151 GACTCCTCGAGCGCTCTCTG 62.047 65.000 32.88 21.57 37.19 3.35
380 381 1.817941 GACTCCTCGAGCGCTCTCT 60.818 63.158 32.88 10.08 37.19 3.10
381 382 0.531090 TAGACTCCTCGAGCGCTCTC 60.531 60.000 32.88 22.39 32.04 3.20
382 383 0.531974 CTAGACTCCTCGAGCGCTCT 60.532 60.000 32.88 15.09 32.04 4.09
383 384 0.812412 ACTAGACTCCTCGAGCGCTC 60.812 60.000 27.64 27.64 32.04 5.03
384 385 0.393267 AACTAGACTCCTCGAGCGCT 60.393 55.000 11.27 11.27 32.04 5.92
385 386 0.248296 CAACTAGACTCCTCGAGCGC 60.248 60.000 6.99 0.00 32.04 5.92
386 387 0.248296 GCAACTAGACTCCTCGAGCG 60.248 60.000 6.99 2.41 32.04 5.03
387 388 0.811915 TGCAACTAGACTCCTCGAGC 59.188 55.000 6.99 0.00 32.04 5.03
388 389 2.360844 TCTGCAACTAGACTCCTCGAG 58.639 52.381 5.13 5.13 35.52 4.04
389 390 2.491675 TCTGCAACTAGACTCCTCGA 57.508 50.000 0.00 0.00 0.00 4.04
390 391 2.797792 GCATCTGCAACTAGACTCCTCG 60.798 54.545 0.00 0.00 41.59 4.63
391 392 2.430332 AGCATCTGCAACTAGACTCCTC 59.570 50.000 4.79 0.00 45.16 3.71
392 393 2.465813 AGCATCTGCAACTAGACTCCT 58.534 47.619 4.79 0.00 45.16 3.69
393 394 2.977772 AGCATCTGCAACTAGACTCC 57.022 50.000 4.79 0.00 45.16 3.85
394 395 4.671250 GCAAAAGCATCTGCAACTAGACTC 60.671 45.833 4.79 0.00 45.16 3.36
395 396 3.190118 GCAAAAGCATCTGCAACTAGACT 59.810 43.478 4.79 0.00 45.16 3.24
396 397 3.190118 AGCAAAAGCATCTGCAACTAGAC 59.810 43.478 4.79 0.00 45.16 2.59
397 398 3.189910 CAGCAAAAGCATCTGCAACTAGA 59.810 43.478 4.79 0.00 45.16 2.43
398 399 3.499048 CAGCAAAAGCATCTGCAACTAG 58.501 45.455 4.79 0.00 45.16 2.57
399 400 2.229543 CCAGCAAAAGCATCTGCAACTA 59.770 45.455 4.79 0.00 45.16 2.24
400 401 1.000506 CCAGCAAAAGCATCTGCAACT 59.999 47.619 4.79 0.00 45.16 3.16
401 402 1.425412 CCAGCAAAAGCATCTGCAAC 58.575 50.000 4.79 0.00 45.16 4.17
402 403 0.320073 GCCAGCAAAAGCATCTGCAA 60.320 50.000 4.79 0.00 45.16 4.08
403 404 1.183030 AGCCAGCAAAAGCATCTGCA 61.183 50.000 4.79 0.00 45.16 4.41
404 405 0.736325 CAGCCAGCAAAAGCATCTGC 60.736 55.000 0.00 0.00 42.49 4.26
405 406 0.601558 ACAGCCAGCAAAAGCATCTG 59.398 50.000 0.00 0.00 0.00 2.90
406 407 0.601558 CACAGCCAGCAAAAGCATCT 59.398 50.000 0.00 0.00 0.00 2.90
407 408 1.012486 GCACAGCCAGCAAAAGCATC 61.012 55.000 0.00 0.00 0.00 3.91
408 409 1.005394 GCACAGCCAGCAAAAGCAT 60.005 52.632 0.00 0.00 0.00 3.79
409 410 2.418356 GCACAGCCAGCAAAAGCA 59.582 55.556 0.00 0.00 0.00 3.91
410 411 1.952635 GTGCACAGCCAGCAAAAGC 60.953 57.895 13.17 0.00 44.64 3.51
411 412 0.872881 GTGTGCACAGCCAGCAAAAG 60.873 55.000 22.40 0.00 44.64 2.27
412 413 1.141449 GTGTGCACAGCCAGCAAAA 59.859 52.632 22.40 0.00 44.64 2.44
413 414 2.806929 GTGTGCACAGCCAGCAAA 59.193 55.556 22.40 0.00 44.64 3.68
414 415 3.585020 CGTGTGCACAGCCAGCAA 61.585 61.111 22.40 0.00 44.64 3.91
415 416 4.854924 ACGTGTGCACAGCCAGCA 62.855 61.111 22.40 0.00 40.19 4.41
416 417 4.318021 CACGTGTGCACAGCCAGC 62.318 66.667 22.40 7.09 0.00 4.85
417 418 2.109538 CTTCACGTGTGCACAGCCAG 62.110 60.000 22.40 14.34 0.00 4.85
418 419 2.124942 TTCACGTGTGCACAGCCA 60.125 55.556 22.40 1.21 0.00 4.75
419 420 2.633657 CTTCACGTGTGCACAGCC 59.366 61.111 22.40 8.76 0.00 4.85
420 421 2.633657 CCTTCACGTGTGCACAGC 59.366 61.111 22.40 14.14 0.00 4.40
421 422 2.179547 TGCCTTCACGTGTGCACAG 61.180 57.895 22.40 16.54 0.00 3.66
422 423 2.124942 TGCCTTCACGTGTGCACA 60.125 55.556 17.42 17.42 0.00 4.57
423 424 2.327940 GTGCCTTCACGTGTGCAC 59.672 61.111 29.61 29.61 46.09 4.57
431 432 0.238289 CACCAATGACGTGCCTTCAC 59.762 55.000 0.00 0.00 39.78 3.18
432 433 2.627791 CACCAATGACGTGCCTTCA 58.372 52.632 0.00 0.00 0.00 3.02
438 439 0.380024 TGTTGTGCACCAATGACGTG 59.620 50.000 15.69 0.00 35.02 4.49
439 440 0.662619 CTGTTGTGCACCAATGACGT 59.337 50.000 15.69 0.00 35.02 4.34
440 441 0.662619 ACTGTTGTGCACCAATGACG 59.337 50.000 15.69 0.00 35.02 4.35
441 442 2.878406 AGTACTGTTGTGCACCAATGAC 59.122 45.455 15.69 5.62 35.02 3.06
442 443 3.207265 AGTACTGTTGTGCACCAATGA 57.793 42.857 15.69 0.00 35.02 2.57
443 444 4.065088 AGTAGTACTGTTGTGCACCAATG 58.935 43.478 15.69 4.95 35.02 2.82
444 445 4.315803 GAGTAGTACTGTTGTGCACCAAT 58.684 43.478 15.69 0.00 35.02 3.16
445 446 3.493699 GGAGTAGTACTGTTGTGCACCAA 60.494 47.826 15.69 6.00 0.00 3.67
446 447 2.036733 GGAGTAGTACTGTTGTGCACCA 59.963 50.000 15.69 4.89 0.00 4.17
447 448 2.612221 GGGAGTAGTACTGTTGTGCACC 60.612 54.545 15.69 0.00 0.00 5.01
448 449 2.299297 AGGGAGTAGTACTGTTGTGCAC 59.701 50.000 10.75 10.75 0.00 4.57
449 450 2.561419 GAGGGAGTAGTACTGTTGTGCA 59.439 50.000 7.76 0.00 0.00 4.57
450 451 2.094130 GGAGGGAGTAGTACTGTTGTGC 60.094 54.545 7.76 0.00 0.00 4.57
451 452 2.163815 CGGAGGGAGTAGTACTGTTGTG 59.836 54.545 7.76 0.00 0.00 3.33
452 453 2.224967 ACGGAGGGAGTAGTACTGTTGT 60.225 50.000 7.76 0.00 0.00 3.32
453 454 2.444421 ACGGAGGGAGTAGTACTGTTG 58.556 52.381 7.76 0.00 0.00 3.33
454 455 2.895242 ACGGAGGGAGTAGTACTGTT 57.105 50.000 7.76 0.00 0.00 3.16
455 456 2.620108 GGAACGGAGGGAGTAGTACTGT 60.620 54.545 7.76 0.00 0.00 3.55
456 457 2.022934 GGAACGGAGGGAGTAGTACTG 58.977 57.143 7.76 0.00 0.00 2.74
457 458 1.637553 TGGAACGGAGGGAGTAGTACT 59.362 52.381 1.37 1.37 0.00 2.73
458 459 2.134789 TGGAACGGAGGGAGTAGTAC 57.865 55.000 0.00 0.00 0.00 2.73
459 460 2.905415 TTGGAACGGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
460 461 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
461 462 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
462 463 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
463 464 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
464 465 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
465 466 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
466 467 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
467 468 2.968675 ACGAGTAATTTGGAACGGAGG 58.031 47.619 0.00 0.00 0.00 4.30
468 469 3.744426 ACAACGAGTAATTTGGAACGGAG 59.256 43.478 0.00 0.00 0.00 4.63
469 470 3.495377 CACAACGAGTAATTTGGAACGGA 59.505 43.478 0.00 0.00 0.00 4.69
470 471 3.364565 CCACAACGAGTAATTTGGAACGG 60.365 47.826 0.00 0.00 0.00 4.44
471 472 3.249080 ACCACAACGAGTAATTTGGAACG 59.751 43.478 0.00 0.00 0.00 3.95
472 473 4.823790 ACCACAACGAGTAATTTGGAAC 57.176 40.909 0.00 0.00 0.00 3.62
473 474 5.838531 AAACCACAACGAGTAATTTGGAA 57.161 34.783 0.00 0.00 0.00 3.53
474 475 5.838531 AAAACCACAACGAGTAATTTGGA 57.161 34.783 0.00 0.00 0.00 3.53
475 476 6.731164 ACTAAAACCACAACGAGTAATTTGG 58.269 36.000 0.00 0.00 0.00 3.28
476 477 8.623310 AAACTAAAACCACAACGAGTAATTTG 57.377 30.769 0.00 0.00 0.00 2.32
482 483 9.112725 AGTATTTAAACTAAAACCACAACGAGT 57.887 29.630 0.00 0.00 0.00 4.18
495 496 9.912634 AGTGCAGTACGTTAGTATTTAAACTAA 57.087 29.630 0.00 0.00 39.14 2.24
497 498 9.565213 CTAGTGCAGTACGTTAGTATTTAAACT 57.435 33.333 0.00 0.00 35.01 2.66
498 499 9.559958 TCTAGTGCAGTACGTTAGTATTTAAAC 57.440 33.333 0.00 0.00 35.01 2.01
501 502 9.778993 CTTTCTAGTGCAGTACGTTAGTATTTA 57.221 33.333 0.00 0.00 35.01 1.40
502 503 8.302438 ACTTTCTAGTGCAGTACGTTAGTATTT 58.698 33.333 0.00 0.00 32.15 1.40
503 504 7.824672 ACTTTCTAGTGCAGTACGTTAGTATT 58.175 34.615 0.00 0.00 32.15 1.89
504 505 7.388460 ACTTTCTAGTGCAGTACGTTAGTAT 57.612 36.000 0.00 0.00 32.15 2.12
505 506 6.808008 ACTTTCTAGTGCAGTACGTTAGTA 57.192 37.500 0.00 0.00 31.99 1.82
506 507 5.702349 ACTTTCTAGTGCAGTACGTTAGT 57.298 39.130 0.00 0.00 31.99 2.24
507 508 6.128063 ACCTACTTTCTAGTGCAGTACGTTAG 60.128 42.308 0.00 0.00 35.78 2.34
508 509 5.707298 ACCTACTTTCTAGTGCAGTACGTTA 59.293 40.000 0.00 0.00 35.78 3.18
509 510 4.522022 ACCTACTTTCTAGTGCAGTACGTT 59.478 41.667 0.00 0.00 35.78 3.99
531 532 8.601476 CCCTAACTTTCATCAAAGAATACGTAC 58.399 37.037 0.00 0.00 41.60 3.67
573 574 3.016736 GGCAGCATTCCAAAACTAGCTA 58.983 45.455 0.00 0.00 0.00 3.32
574 575 1.821136 GGCAGCATTCCAAAACTAGCT 59.179 47.619 0.00 0.00 0.00 3.32
575 576 1.468054 CGGCAGCATTCCAAAACTAGC 60.468 52.381 0.00 0.00 0.00 3.42
589 611 2.240612 GATGTGTTCGAACCGGCAGC 62.241 60.000 24.78 18.53 0.00 5.25
603 625 7.099764 ACAGTATTCAGGAACTACTTGATGTG 58.900 38.462 0.00 0.00 36.02 3.21
617 639 6.432783 TCCACAAACCAATAACAGTATTCAGG 59.567 38.462 0.00 0.00 0.00 3.86
618 640 7.305474 GTCCACAAACCAATAACAGTATTCAG 58.695 38.462 0.00 0.00 0.00 3.02
667 689 3.711059 GAGGGATGCACTGGCCTGG 62.711 68.421 14.82 4.64 40.13 4.45
668 690 2.124403 GAGGGATGCACTGGCCTG 60.124 66.667 8.29 8.29 40.13 4.85
669 691 2.285969 AGAGGGATGCACTGGCCT 60.286 61.111 3.32 0.00 40.13 5.19
682 704 5.995282 CAGGTGTGATCTACTACTAGAGAGG 59.005 48.000 0.00 0.00 32.24 3.69
739 881 1.080538 GGTGGGTAGGGGAGTGAGT 59.919 63.158 0.00 0.00 0.00 3.41
743 885 1.704704 GAGAGGTGGGTAGGGGAGT 59.295 63.158 0.00 0.00 0.00 3.85
758 900 1.601197 GGATAGAGCCGAGCCGAGA 60.601 63.158 0.00 0.00 0.00 4.04
763 914 0.901124 ATGGATGGATAGAGCCGAGC 59.099 55.000 0.00 0.00 0.00 5.03
788 939 4.167359 TCAGTCGCTCGCTCGCTC 62.167 66.667 0.00 0.00 0.00 5.03
844 996 2.999355 CAGAGCAGGACAAAGAAGTAGC 59.001 50.000 0.00 0.00 0.00 3.58
950 1102 1.997874 GGAGCAGTGGAGGGTGGAT 60.998 63.158 0.00 0.00 0.00 3.41
951 1108 2.607750 GGAGCAGTGGAGGGTGGA 60.608 66.667 0.00 0.00 0.00 4.02
1583 1746 3.196469 TCCATTACTGAGCAAGAGAGGTG 59.804 47.826 0.00 0.00 0.00 4.00
1586 1749 9.421806 CTATTAATCCATTACTGAGCAAGAGAG 57.578 37.037 0.00 0.00 0.00 3.20
1588 1751 7.148672 CGCTATTAATCCATTACTGAGCAAGAG 60.149 40.741 0.00 0.00 0.00 2.85
1591 1754 6.288294 ACGCTATTAATCCATTACTGAGCAA 58.712 36.000 0.00 0.00 0.00 3.91
1592 1755 5.853936 ACGCTATTAATCCATTACTGAGCA 58.146 37.500 0.00 0.00 0.00 4.26
1593 1756 7.976734 AGATACGCTATTAATCCATTACTGAGC 59.023 37.037 0.00 0.00 0.00 4.26
1600 1763 9.823647 CCAATAGAGATACGCTATTAATCCATT 57.176 33.333 7.25 0.00 35.04 3.16
1602 1765 8.362464 ACCAATAGAGATACGCTATTAATCCA 57.638 34.615 7.25 0.00 35.04 3.41
1603 1766 9.088512 CAACCAATAGAGATACGCTATTAATCC 57.911 37.037 7.25 0.00 35.04 3.01
1604 1767 9.088512 CCAACCAATAGAGATACGCTATTAATC 57.911 37.037 7.25 0.00 35.04 1.75
1605 1768 8.594550 ACCAACCAATAGAGATACGCTATTAAT 58.405 33.333 7.25 0.00 35.04 1.40
1625 1810 0.234884 CTGCGAGAACGAAACCAACC 59.765 55.000 0.00 0.00 42.66 3.77
1626 1811 1.192534 CTCTGCGAGAACGAAACCAAC 59.807 52.381 0.00 0.00 42.66 3.77
1627 1812 1.497991 CTCTGCGAGAACGAAACCAA 58.502 50.000 0.00 0.00 42.66 3.67
2032 2219 3.646976 TACTCCGGCGCGAGATCG 61.647 66.667 25.17 7.50 43.27 3.69
2071 2258 2.989881 GCTGGTTAAGTTGGCGGCC 61.990 63.158 13.32 13.32 0.00 6.13
2125 2312 1.144936 CCCGATGAAGAGCAGGACC 59.855 63.158 0.00 0.00 0.00 4.46
2353 2542 4.357947 GACACCAGCTCGTCGGCA 62.358 66.667 8.15 0.00 34.17 5.69
2482 2671 1.371183 CCGGAACACCTTCAGCTCA 59.629 57.895 0.00 0.00 0.00 4.26
2486 2675 1.071471 ACAGCCGGAACACCTTCAG 59.929 57.895 5.05 0.00 0.00 3.02
2503 2692 2.419057 GTGCCTCCCCATTATGCAC 58.581 57.895 0.00 0.00 44.53 4.57
2527 2716 4.608774 TCCCCCGTCACGTGGTCT 62.609 66.667 17.00 0.00 0.00 3.85
2692 2881 1.217511 CAGCGCCAGATCACTGTCT 59.782 57.895 2.29 0.00 42.05 3.41
2948 3137 3.822167 TCCAGCGACCGATACATGTATAA 59.178 43.478 18.28 0.00 0.00 0.98
3057 3246 2.168521 GCTACTGTCTTGCTACATGGGA 59.831 50.000 0.00 0.00 0.00 4.37
3078 3267 2.407846 ATATCTGCGACTCCGGCGTG 62.408 60.000 0.00 0.14 36.06 5.34
3147 3337 6.655930 TGTTGGAAATACCTATGAACCCTAC 58.344 40.000 0.00 0.00 39.86 3.18
3148 3338 6.894735 TGTTGGAAATACCTATGAACCCTA 57.105 37.500 0.00 0.00 39.86 3.53
3221 3416 2.200170 AAGCGGCGTTTGATGAAGCC 62.200 55.000 8.54 0.00 45.67 4.35
3222 3417 0.794605 GAAGCGGCGTTTGATGAAGC 60.795 55.000 15.15 0.00 0.00 3.86
3223 3418 0.179189 GGAAGCGGCGTTTGATGAAG 60.179 55.000 15.15 0.00 0.00 3.02
3225 3420 1.003839 AGGAAGCGGCGTTTGATGA 60.004 52.632 15.15 0.00 0.00 2.92
3226 3421 1.298157 TGAGGAAGCGGCGTTTGATG 61.298 55.000 15.15 0.00 0.00 3.07
3227 3422 1.003839 TGAGGAAGCGGCGTTTGAT 60.004 52.632 15.15 1.21 0.00 2.57
3228 3423 1.667830 CTGAGGAAGCGGCGTTTGA 60.668 57.895 15.15 0.00 0.00 2.69
3229 3424 1.507141 AACTGAGGAAGCGGCGTTTG 61.507 55.000 15.15 1.08 0.00 2.93
3230 3425 0.818040 AAACTGAGGAAGCGGCGTTT 60.818 50.000 9.21 9.21 0.00 3.60
3231 3426 0.818040 AAAACTGAGGAAGCGGCGTT 60.818 50.000 9.37 0.00 0.00 4.84
3233 3428 1.207593 CAAAACTGAGGAAGCGGCG 59.792 57.895 0.51 0.51 0.00 6.46
3234 3429 1.081175 GCAAAACTGAGGAAGCGGC 60.081 57.895 0.00 0.00 0.00 6.53
3235 3430 0.954452 AAGCAAAACTGAGGAAGCGG 59.046 50.000 0.00 0.00 0.00 5.52
3236 3431 1.927710 GCAAGCAAAACTGAGGAAGCG 60.928 52.381 0.00 0.00 0.00 4.68
3252 3447 2.511145 GCCTCTCGGAGCAGCAAG 60.511 66.667 12.42 0.02 0.00 4.01
3471 3713 4.341366 TCAGATCACAAAGCTTGAGACA 57.659 40.909 0.00 0.00 33.18 3.41
3551 3793 2.869233 AATTGGCCGTATGCATTGAC 57.131 45.000 3.54 0.00 43.89 3.18
3554 3796 8.900983 AATTAATAAAATTGGCCGTATGCATT 57.099 26.923 3.54 0.00 43.89 3.56
3641 3885 4.817464 CAGTTAGATAGGAGTAGCGACAGT 59.183 45.833 0.00 0.00 0.00 3.55
3812 4056 3.134127 GGTTGTGGCGGCCTCATC 61.134 66.667 22.94 20.79 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.