>input_sequence_39391
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---------------------------------------ATGTCCGAGGAGGACGAGGACCAGGC---GGGGGCGCCGCC
CAAGCGGCCGCGCGCGGCGTCGCCGCCTCCTCCTCCTCCGCCGCCGCCGCCCGACCAGGTGCTCGACAACGTGCTCGAGA
CGGTGCTGCAGTTCCTCCGGGCCCCGGGCGACCGTGGCGCGGCCTCCCTCGTCTGCCGCTCCTGGCACCGCGCCGAGTCC
GCCACCCGCGCCTCCGTCGCCGTCCGCAACATCCTCGCCGCCTCCCCGGCCCGCGCCGCGCGCCGCTTCCCCAACGCGCA
CCACATCCTGCTCAAGGGCCGCCCCCGCTTCGCCGACTTCAACCTCCTGCCCCCCGGCTGGGCCGCCTCCGCCTTCCGCC
CCTGGGCCGCCGCCCTCGCCGCCGCCGCCTTCCCCGCGCTCCGCTCCCTCTCCCTCAAGCGCATCACCGTCACCGACGAC
GACCTCGACCTCCTCGCCCGCTCCCTCCCGCCCTCCTTCCGCGAGCTCTCCCTCCTCCTCTGCGACGGCTTCTCCTCCCG
CGGCCTCGCCTCCCTCGCCTCCCATTGCAGGTAATATAATGCCATTCCCTTCCATTCCAGCTTGCCACCTCTCTTGCTCA
GTAATGGAT-----------------TAATAGCGTATCTCTA-----TTGGTTGGTTTCGTTCT--CGCAGAGGGCTGCG
TGTGCTCGACGTGGTGGACTGCGAGCTCAACGAGGAGGAGGACGACGAGGTGTCGGACTGGGTGGCGGCGTTCCCGCGCG
GGCACACCGACCTCGAGTCCCTCTCCTTCGAGTGCTTCACCCCGCAGGTACCCTTCGCCGCGCTCGAGGCTCTCGTGGCG
CGCTCGCCGCGCCTCCGCCGCCTGCGCGTCAACCAGCACGTCTCGCTCGGGCAGCTGCGCCGGCTCATGGCGCTCACGCC
CCGCCTCACGCACCTCGGCACGGGCTCGTTCCGGCCAGGGGACGGCGCCGAGGACGAGGGGCTCGACTTCGGCCAGATGT
TGACCGCCTTCGCGGCGGCCGGCCGGGCCAACTCGCTGGTCTCGCTGTCCGGCTTCCGCGATCTCGCGCCGGAGTACCTG
CCGACCATTGCCACGGTGGCCGCCAACTTAACCAGCATGGACCTGAGCTACGCCCCTGTCAACCCCGACCAGGTCCTGCT
CTTCATCGGGCAATGCCGCAGCCTTGAGACGCTATGGGTACT-ACCAGATTGCTTTCTCGCCATAGTTTTA-CCTCTGGG
CTGCTCCATGGTTCCCAATTTCTGATGACAAGTTCTTTGCCAGGTGCTCGACTCAGTGCGCGACGAGGGGCTCCAAGCCG
TGGCGATGTGCTGCAAGAAGCTCCAGGTTCTCCGCGTGCTCCCATTGGACGCGCACGAGGATGCCGACGAGCTGGTGTCG
GAGGTCGGGCTCACCGCCATCTCCGAGGGCTGCCGTGACCTTCGGTCCATTCTCTACTTCTGCCAGAGGATGACCAACGC
CGCCGTCATCTCCATGTCGCACAACTGCCCTGAGCTGAAGGTGTTCCGGCTGTGCATAATGGGGAGGCACCGGCCAGACC
ACGTGACGGGGGAGCCGATGGACGAAGGGTTCGGCGCCATTGTCCGCAACTGCAGCAAGCTCACCAGGCTCTCCACGTCC
GGGCACCTGACGGATCGAGCATTCGAGTACATCGGCAACTACGGCAGCTCCCTGCGGACGCTCTCCGTGGCGTTCGCCGG
AGACAGTGATCTGGCGCTGCAGCACATCCTCCAGGGCTGCTCCAAGCTGGAGAAGCTCGAGATAAGGGACTGCCCGTTCG
GCGACGCCGGCCTGCTCTCCGGCATGCACCATTTCTACAACATGCGGTTCGTCTGGATGTCGGGCTGCAGCCTGACGCTG
CAGGGCTGCCAGGAGGTGGCGCGGCAGCTCCCACGGATGGTGGTGGAGCTGATAAACAGCCAGCCTGAGATCGAGAAGAC
AGACGGCGTCGACATCTTATACATGTATCGGTCGCTGGAGGGGCCAAGGGAGGATGTTCCACCATTTGTGAAGATCCTGT
GA------------------------------------------------------------------------------
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-----------------
>chr4D_1_TraesCS4D01G301800
GATCCGTTGCCGAGCCATGGCTACGCGTAGACGTTGAGCTCCGAGCTGCAAGCGGATGGGGGGTGCGGGGTGGAGGGGAA
TGTGAGTGTGACTAGGGTTCGAGGTTGCCGTCCGACTTAAATAGCCGGATTTGGTCCCTTTGGCGGCGCGCCGGATCGTC
ATTCTCACCAGACCGCCGAGTTTACATGGGTGTTCGCCTAGGTCCTGCACGCCAGTCTGATGTGGCGGACGTGTGCTGAC
GCGTTTGGGCCTCCTCGCATCCGCCCCAGATATGGGCCGAGTACGAGGGATGCCAGTCAGCCCAGGTTTATAGGACCGGT
ATAAGAGGCGCGCCCGTGTCGAGATTTTGCGGCACTGACCGGGCCGTCCGCCCGACATACAGAGAGCGCTCGAGGAGTCT
AGTTGCAGATGCTTTTGCTGGCTGTGCACACGTGAAGGCACGTCATTGGTGCACAACAGTACTACTCCCTCCGTTCCAAA
TTACTCGTTGTGGTTTTAGTTTAAATACTAACGTACTGCACTAGAAAGTAGGTACGTATTCTTTGATGAAAGTTAGGGTT
CGTGTACACCAGCTAG---------------------CTAGTTTTGGAATGCTGCCGGTTCGAACACATCAAGTAGTTCC
TGAATACTGTTATTGGTTTGTGGACGCTTCTAAACAAGTTGGGTTGGGCCAGGCCAGTGCATCCCTCTC-----------
----TAGTAGTAGATCACACCTGAAAAAG---------------------------------------------------
------------------------------------------------------GTACAAATCATGAGATCTACTCACTC
ACTCACTCCCCTACCCACCT---------CTCGGCTCGGCTCTATCCATCCATCCAGCGAGCGAGCGAGCGACTGACCCG
GCGCGTCCAGCTCCAGCCCCCC-TCCCTCCCTCCCGCTACTTCTTTGTCCTGCTCTGCTGTAGAGCACTGCCGTCTGCCG
GGGCAACCGGCGGAACACAAGTACGCCTCCCCCCTCACCTCACCCCACACCCACCCACCCAA-----TCCACCCTCCACT
GCTCCCTCCGCTCGTCCCCGCTCGTCCTCCCGC---GCCATGTCCGAGGAGGACGAGGACCAGGC---GGGGGCGCCGCC
CAAGCGGCCGCGCGCGGCGTCGCCGCCTCCTCCTCCTCCGCCGCCGCCGCCCGACCAGGTGCTCGACAACGTGCTCGAGA
CGGTGCTGCAGTTCCTCCGGGCCCCGGGCGACCGTGGCGCGGCCTCCCTCGTCTGCCGCTCCTGGCACCGCGCCGAGTCC
GCCACCCGCGCCTCCGTCGCCGTCCGCAACATCCTCGCCGCCTCCCCGGCCCGCGCCGCGCGCCGCTTCCCCAACGCGCA
CCACATCCTGCTCAAGGGCCGCCCCCGCTTCGCCGACTTCAACCTCCTGCCCCCCGGCTGGGCCGCCTCCGCCTTCCGCC
CCTGGGCCGCCGCCCTCGCCGCCGCCGCCTTCCCCGCGCTCCGCTCCCTCTCCCTCAAGCGCATCACCGTCACCGACGAC
GACCTCGACCTCCTCGCCCGCTCCCTCCCGCCCTCCTTCCGCGAGCTCTCCCTCCTCCTCTGCGACGGCTTCTCCTCCCG
CGGCCTCGCCTCCCTCGCCTCCCATTGCAGGTAATATAATGCCATTCCCTTCCATTCCAGCTTGCCACCTCTCTTGCTCA
GTAATGGAT-----------------TAATAGCGTATCTCTA-----TTGGTTGGTTTCGTTCT--CGCAGAGGGCTGCG
TGTGCTCGACGTGGTGGACTGCGAGCTCAACGAGGAGGAGGACGACGAGGTGTCGGACTGGGTGGCGGCGTTCCCGCGCG
GGCACACCGACCTCGAGTCCCTCTCCTTCGAGTGCTTCACCCCGCAGGTACCCTTCGCCGCGCTCGAGGCTCTCGTGGCG
CGCTCGCCGCGCCTCCGCCGCCTGCGCGTCAACCAGCACGTCTCGCTCGGGCAGCTGCGCCGGCTCATGGCGCTCACGCC
CCGCCTCACGCACCTCGGCACGGGCTCGTTCCGGCCAGGGGACGGCGCCGAGGACGAGGGGCTCGACTTCGGCCAGATGT
TGACCGCCTTCGCGGCGGCCGGCCGGGCCAACTCGCTGGTCTCGCTGTCCGGCTTCCGCGATCTCGCGCCGGAGTACCTG
CCGACCATTGCCACGGTGGCCGCCAACTTAACCAGCATGGACCTGAGCTACGCCCCTGTCAACCCCGACCAGGTCCTGCT
CTTCATCGGGCAATGCCGCAGCCTTGAGACGCTATGGGTACT-ACCAGATTGCTTTCTCGCCATAGTTTTA-CCTCTGGG
CTGCTCCATGGTTCCCAATTTCTGATGACAAGTTCTTTGCCAGGTGCTCGACTCAGTGCGCGACGAGGGGCTCCAAGCCG
TGGCGATGTGCTGCAAGAAGCTCCAGGTTCTCCGCGTGCTCCCATTGGACGCGCACGAGGATGCCGACGAGCTGGTGTCG
GAGGTCGGGCTCACCGCCATCTCCGAGGGCTGCCGTGACCTTCGGTCCATTCTCTACTTCTGCCAGAGGATGACCAACGC
CGCCGTCATCTCCATGTCGCACAACTGCCCTGAGCTGAAGGTGTTCCGGCTGTGCATAATGGGGAGGCACCGGCCAGACC
ACGTGACGGGGGAGCCGATGGACGAAGGGTTCGGCGCCATTGTCCGCAACTGCAGCAAGCTCACCAGGCTCTCCACGTCC
GGGCACCTGACGGATCGAGCATTCGAGTACATCGGCAACTACGGCAGCTCCCTGCGGACGCTCTCCGTGGCGTTCGCCGG
AGACAGTGATCTGGCGCTGCAGCACATCCTCCAGGGCTGCTCCAAGCTGGAGAAGCTCGAGATAAGGGACTGCCCGTTCG
GCGACGCCGGCCTGCTCTCCGGCATGCACCATTTCTACAACATGCGGTTCGTCTGGATGTCGGGCTGCAGCCTGACGCTG
CAGGGCTGCCAGGAGGTGGCGCGGCAGCTCCCACGGATGGTGGTGGAGCTGATAAACAGCCAGCCTGAGATCGAGAAGAC
AGACGGCGTCGACATCTTATACATGTATCGGTCGCTGGAGGGGCCAAGGGAGGATGTTCCACCATTTGTGAAGATCCTGT
GAGAAGATTATAGGTGCTTGGCATCCTCGGTGCAGATCAAATGCATCCCATGTAGCAAGACAGTAGCACGCCGGAGTCGC
AGATATGAGAGCAGCAGCAGAGTGTTC-GTTCAGCCATTGTTGTTGTAGTAGCTGTGTAGGGTTCATAGGTATTTCCAAC
ATTTTCTACGAGAAGATCATAAGCGC-----GGCGGAGCATGCTTCTTCGAGGGGGGCTTCATCAAACGCCGCTTCCTCA
GTTTTGCTTGCTGCTCC----GAGAGGCCGCCTTC----TGCTT--------------------CGGCATGGCGGCGATG
GTTTCCCTAATTTTTTCGAAGCGAATCTTGTTATCATCA---TCAGATTAAATTCATTAACACTTCTATTCCATGTTCTT
GTTTCGCATGGTTTCCCTTCCA---------TAGTTCATTAGTCTGAATTCTG-------AAATAATTTCTCCTGAATCG
AGCCGTGTTATTTTTTTGGGATTTGTTTCTCCTGTCTCAAGCTTTGTGATCTGATGAATGTCCATCTCTTTTTTTTTTAG
AAAAGGAGGAAAACCCCCGGCCTCTGCATCTGGTCAATGCATACGGCCAA--TTTTATTAATTATTAGCACAAAACCTTA
CAAAGTCGTACAACAGTAAGACCAAAGCCACCATCTTCGCAACCACTGTCGCTACTCCTATCTAACTGATGAAGGGGCGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATTTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACCAGGCCGCCTGCCGCGGATGAGGCCGCCACAACCACCTACC
ACTAATCCATCTTCAGAGCTGTACTGTTGCAACGGCCTTGCCCGGTCTCACTGCCGCCGACGCCACCACGACGCCAGACA
GCGTCGACCTCCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCGCCGCC
AAGAATATTCATAAAGA
>chr4B_506
TACTA---------------------------------------------------------------------------
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-------------------------------CGTAGTGCACTAGAAAGTAGATATCCTTTGATAAAGTC---TTAGGGTG
CGTGTACAGCAGCC-------------------------AGTTTTGGAATACTGCCAGTTCGTATACATCAAGTAGTTTT
TGAATACTGTTATTGGTTTGTGGACGCTTCTAAACAAGTTGGGTTG-----GGCCAGTGCATCTCTCTCGTACCAGTACA
CCAGTT---GTAGATCACACCTGAAAAAG---------------------------------------------------
------------------------------------------------------GTACAAATCATGAGATCTACTCACTC
-----------TACCCACCCCTTCACCACCTCGCCTCGGCTCTATCCATCCATCCAGCCAGCGAGCGACTGACCC-----
GCGCGTCCAGCTCCAGCCCCCCCTCCCTCCCTCCCTCTACTTCTTTGTCCTGCTCTGCTGTAGAGCACTGCCGTCTGCCG
GGGCAACCGGCGGAACACAAGTACGCCTCCCCCCTCACCTCACCCCACGGCCTCACACCCACACCCACCCACCCTCCACT
GCTCCCTCCGCTC-----CGCTCGCCCTCGCGC---GCCATGTCCGAGGAGGACGAGGACCAGGC---GGGGGCGCCGCC
CAAGCGGCCGCGCGCGGCGTCGCCG------CCTCCGCCGCCGCCGCCGCCCGACCAGGTGCTCGACAACGTGCTCGAGA
CGGTGCTCCAGTTCCTCAGGGCCCCGGGCGACCGTGGCGCGGCCTCCCTCGTCTGCCGCTCCTGGCACCGCGCCGAGTCC
GCCACCCGCGCCTCCCTCGCCGTCCGCAACATCCTCGCCGCCTCCCCGGCCCGCGCTGCGCGCCGCTTCCCCAACGCGCA
CCACATCCTCCTCAAGGGCCGCCCCCGCTTCGCCGACTTCAACCTGCTGCCCCCCGGCTGGGCCGCCTCCGCCTTCCGCC
CCTGGGTCGCCGCCCTCGCCGCCGCCGCCTTCCCCGCGCTCCGCTCCCTCTCCCTCAAGCGCATCACCGTCACCGACGAC
GACCTCGACCTCCTCGCCCGCTCCCTCCCGCCCTCCTTCCGCGAGCTCTCCCTCCTCCTCTGCGACGGCTTCTCCTCCCG
CGGCCTCGCCTCCCTCGCCTCCCATTGCAGGTAATATAATGCCATTCCCTTCCATTCCAGCTTGCT--------------
CACACTACTCGGTAATGGCGGCATGATAATAGCGTATCTCTA-----TT---TGGTTTGGTTCTCGCGCAGAGGGCTGCG
TGTGCTCGACGTGGTGGACTGCGAGCTCAACGAGGAGGAGGACGACGAGGTGTCGGACTGGGTGGCGGCGTTCCCGCGGG
GGCACACCGACCTGGAGTCCCTCTCCTTCGAGTGCTTCACCCCGCAGGTACCGTTCGCCGCGCTCGAGGCTCTCGTGGCG
CGCTCGCCGCGCCTCCGTCGCCTGCGCGTCAACCAGCACGTCTCGCTCGGTCAGCTGCGCCGGCTCATGGCGCTCACGCC
CCGCCTCACGCACCTCGGCACGGGCTCGTTCCGGCCGGGGGACGGCGCCGAGGACGAGGGGCTCGACTTCGGCCAGATGC
TGACCGCCTTCGCGTCGGCCGGCCGGGCCAACTCGCTGGTCTCGCTCTCCGGCTTCCGTGATCTCGCGCCGGAGTACCTG
CCGACCATTGCCACGGTCGCTGCCAACTTAACCAGCATGGACCTGAGCTACGCCCCTGTCAACCCCGACCAAGTCCTGCT
CTTCATCGGGCAATGCCGCAGCCTTGAGACGCTATGGGTACTAACCAGACTGCTTTCTCGCCATAGTTCTTGCCTCTGGG
CTGCTCCATGGTTCCCAATTTCTGATGACAAGTTCTTTGTCAGGTGCTCGACTCAGTGCGCGACGAGGGGCTCCAAGCCG
TGGCGATGTGCTGCAAGAAGCTCCAGGTTCTCCGCGTGCTCCCATTGGACGCGCACGAGGACGCAGATGAGCTGGTGTCG
GAGGTCGGGCTCACCGCCATCTCCGAGGGCTGCCGTGACCTTCGGTCCATTCTCTACTTCTGCCAGAGGATGACCAACGC
CGCCGTCATCTCCATGTCGCACAACTGCCCCGAGATGAAGGTGTTCCGGCTATGCATAATGGGGAGGCACCGGCCTGACC
ACGTGACGGGGGAGCCGATGGACGAAGGGTTCGGCGCCATTGTCCGCAACTGCAGCAAGCTCACCAGGCTCTCCACGTCC
GGGCACCTGACGGATCGAGCGTTCGAGTACATTGGCAAGTACGGCAGCTCCTTGCGGACGCTCTCCGTGGCGTTCGCCGG
GGACAGTGATCTGGCGCTGCAGCACATCCTCCAGGGCTGCTCCAAGCTGGAGAAGCTCGAGATAAGGGACTGCCCGTTCG
GCGACGCCGGCCTCCTCTCCGGCATGCACCATTTCTACAACATGCGGTTCGTCTGGATGTCGGGCTGCAGCCTGACGCTG
CAAGGCTGCCAGGAGGTGGCGCGGCAGCTCCCACGGATGGTGGTGGAGCTGATAAACAGCCAGCCTGAGATCGAGAAGAC
AGACGGCGTCGACATCCTATACATGTATCGATCACTGGAGGGGCCAAGGGAGGATGTTCCACCATTTGTGAAGATCCTGT
AAGAAGATTATAGGTGCTTGGCATCCTCGGTGCAGATCAAATGCAGCCCATGTAGCAAGACAGCAGGACGCCGGAGTCGC
AGATATGAGAG--------GAGTGTTC-GTTCAGCCATTGTTGTTGTAGTAGCTGT--AGGGTTCATAGGTATTTCCAAC
ATTTTCTACGAGAAGATCATAAGCGC-----GGCGGAGCAAGCTTCTTGGAGGGGCCTTCATCACCATT--GCCTCCTCA
GTTTTGTTTGCTGCTCCCTCTGAGAGGCCGCCTTC----TGTTCGAGGACGGACCTATCCGCGCCGGCACGGCGGCGATG
GTTTCCCTAA-TTTTTCGAAGCGAATCTTGTTATCATCAACATCAGATTAAACTCATTAACACTTCTATTCCATGTTCTT
GTTTCGCATGGTTTCCCTTCCA---------TAGTTCATTAGTCAGGTGCCAGAATCCTAAAATAATTTCTCCTGAATTG
AGCCGTGTTATTTTGTTGGGAT----------------------------------------------------------
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>chr4A_511
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------------------------------ACGTACTGCACTAGAAAGGAGATACGTATTCTTTGATGAAAGTTAGGGTT
CGCGTACACCACACCAGCTAGCTAGTTTTGGAATGAACTGGTTTTGGAACACTGCCGGTTCGAATACACCAAGTAGTTTT
TGAATACTGTTATTGGTCCGTGGACGCTTCTAGACAAGTTCC----------------------CTCTCGTACCAGTACA
CCAGTAGTAGTAGATCACACCTGAAAAAGGTACTCCCTCCATTCGGAATTACTTGTCTCGGAAATGGATGTATCTAAAAC
TAAAATACGTCTAGATACATCCATTTCTGCGACAAGTAATTCCGAACGGAGGGAGTACAAATCATGAGATCTACTCACTC
GCTCGCTCCCCTACCCACCCCTTCACCACCTCGCC---------------------------------------------
--------------------------------CCCTCTACTTCCTTGTCCTGCTCTGCTGTCGAGCACTGCCGTCTGCCG
GGGCAACCGGCGGAACACAAGTACGCCTCCCCCCTCACCTCAC-----ACCCACCCACCCAG-----CCCACCCTCCACT
GCTCCCTCCGCGC-----CGCTCGCCCTCGCGCGCGGCCATGTCCGAGGAGGACGAGGACCAGGCGGCGGGGGCGCCGCC
CAAGCGGCCGCGCGCGGCGTCGCCG------CCT---CCGCCGCCGCCGCCCGACCAGGTGCTCGACAACGTGCTGGAGA
CGGTGCTCCAGTTCCTACGGGCCCCGGGCGACCGGGGCGCGGCCTCCCTCGTCTGCCGCTCCTGGCACCGCGCCGAGTCC
GCCACCCGCGCCTCCGTCGCCGTCCGCAACATCCTCGCCGCCTCCCCGGCGCGCGCCGCGCGGCGCTTCCCCAACGCGCA
CCACATCCTCCTCAAGGGCCGCCCCCGCTTCGCCGACTTCAACCTGCTGCCCCCCGGCTGGGCCGCCTCCGCCTTCCGCC
CCTGGGCCGCCGCCCTCGCCGCCGCCGCCTTCCCCGCGCTCCGCTCCCTCTCGCTCAAGCGCATCACCGTCACCGACGAC
GACCTCGACCTCCTCGCCCGCTCCCTCCCGCCCTCCTTCCGCGAGCTCTCCCTCCTCCTCTGCGACGGCTTCTCCTCCCG
CGGCCTCGCCTCCCTCGCCTCCCATTGCAGGTAATATAATGCCATTCCCTTCCATTCCAGCTTGCTACATGTCCCTCTCA
CACACTACTTGGTAATGGCGGACTAATAATGGCGTACCTCCATTTGGTT---TGGTTTGGTTCTCGCGCAGAGGGCTGCG
TGTGCTCGACGTGGTGGACTGCGAGCTCAACGAGGAGGAGGACGACGAGGTGTCGGACTGGGTGGCGGCGTTTCCGCGCG
GCCACACCGACCTGGAGTCTCTCTCCTTCGAGTGCTTCACCCCGCAGGTACCCTTCGCCGCCCTCGAGGCTCTCGTGGCG
CGCTCGCCGCGCCTCCGCCGCCTGCGCATCAACCAGCACGTCTCGCTCGGCCAGCTGCGCCGGCTCATGGCGCTCATGCC
TCGCCTCACGCACCTCGGCACGGGCTCGTTCCGGCCGGGGGACGGCGCCGAGGACGAGGGGCTCGACTTTGGTCAGATGT
TGACCGCCTTCGCGTCGGCCGGCCGGGCTAACTCGCTGGTGTCGCTGTCCGGCTTCCGTGATCTCGCGCCGGAGTACCTG
CCGACCATTGCCACGGTCGCCGCCAACTTAACCAGCATGGACCTGAGCTACGCCCCTGTCAACCCCGACCAAGTCCTGCT
CTTCATCGGGCAATGCCGCAGCCTCGAGACGCTATGGGTACTGACCAGATTGCTTTCACGCCATAGTTTTA-CCTCTGGG
CTGCTCCATGGTTCCCATTTTCTGATGACAAGTTCTTTGCCAGGTGCTCGACTCAGTGCGCGACGAGGGGCTCCAAGCCG
TGGCTATGTACTGCAAGAAGCTCCAGGTTCTCCGTGTGCTCCCATTGGACGCGCACGAGGACGCCGACGAGCTGGTGTCG
GAGGTCGGGCTCACCGCCATCTCGGAGGGCTGCCGTGACCTTCGCTCCATCCTCTACTTCTGCCAGAGGATGACCAACGC
CGCCGTCATCACCATGTCGCAGAACTGCCCCGAGATGAAGGTGTTCCGGCTATGCATAATGGGGAGGCACCGGCCCGACC
ACGTGACGGGGGAGCCGATGGACGAGGGGTTCGGCGCCATTGTCCGCAACTGCAGCAAGCTCACCAGGCTCTCCACGTCC
GGGCACCTGACGGACCGAGCATTCGAGTACATCGGCAACTACGGCAGCTCCCTGCGGACGCTCTCCGTGGCGTTCGCCGG
GGACAGCGATCTGGCGCTGCAGCACATCCTCCAGGGCTGCTCCAAGCTGGAGAAGCTGGAGATAAGGGACTGCCCGTTCG
GCGACGCCGGCCTGCTCTCCGGTATGCACCATTTCTACAACATGCGGTTCGTCTGGATGTCGGGCTGCAGCCTGACGCTG
CAAGGCTGCGAGGAGGTGGCCCGGCAGCTCCCACGGATGGTGGTGGAGCTGATAAACAGCCAGCCTGAGATGGAGAAGAC
AGACGGCGTCGACATCCTATACATGTATCGGTCGCTGGAGGGGCCAAGGGAGGATGTTCCACCATTTGTGAAGATCCTGT
GAGAAGATCATAGGTGCTTGGCATCCTCGGCGCAGATCAAATGCAGAA-----------------------------CGC
AGATATGAGAGCAGCAGCAGAGTGTTGAGTTCAGTCATTGTTGTTGTAGTAGCTGT--AGGGTTCATAGGCATTTCCAAC
ATTTTGTACGAGAAGATGATAAGCGCGGGCGGGCGGAGCAAGCTTCTTCGAGGGGCCTTCATCGCCATT--GCTTCCTCA
GTTTTGTTTGCTGCTCCCTCCGAGAGGCCGCCTTCCTTGTGTTCGAGGACGG--------------------CGGCGATG
GTTTCCCTAA-TTTTTCGAAGCGGATCTTGTTAT------CATCGGATTAAATTCATTAACACTTGTGTTCCATGTTCTT
GTC-CGCATGGTTTCCCTTCCCTTCCACAGTTAGTTCATTAGTCTGAATTCTAC-------AATAATTTCTCCAGAATTG
AGCCATGTTAATTTTTTGGGATTTGTTTCTCCCGTCTCAAGCTTTGTGATCTGA--------------------------
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>chr3D_3497
ATGCCATCTAC---------------------------------------------------------------------
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----------------------------------------------------------------------TTTTTTTTAG
AAAAGGAGGAATACCCCCGGCCTCTGCATCTGATCGATGCATACGGCCAA--TTTTATTAATTATTAGCATAAAACCTTA
CAAAGTCGTACAACAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAACTGATGAAGGGACGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGTGTGCTCCTCAACCAGGCCGCCTACCGCGTATGAGGCCGCCACAACCACCTACC
ACTAATCCATCTTCAGAGCTGTACTGTTGCAACGGCCTTGCCCGGTCTCACTGCCGCCGACGCCACCACGACGCCAGACA
GCGTCGACCTTCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCGCCGCC
AAGAATATGCATAAAGA
>chr6D_3504
TCTTTTTA------------------------------------------------------------------------
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-----------------------------------------------------------------------TTTTTTTAG
AAAAGGAGGAATA-CCCCGGCCTCTGCATCTAATCGATGCATACGGTCAA--TTTTATTAATTATTAGCACAAAACCTTA
CAAAGTCATACAACAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAACTGATGAAGGGGCGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACCAGGCCGCCTGCCGCGTATGAGGCCGCCACAACCACCTACC
ACTAATCCATCTTCAGAGCTGTACTGTTGCAACGGCCTTGCCCGGTCTCACTGCCGCCGACGCCACCACGACGCCAGACA
GCGTCGACCTCGTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCGCCGCC
AAGAATATGCATAAAGA
>chr2D_3506
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------------------------------------------------------------------TCTTTTTTTTTT--
--AAGGAGGAATACCCCCGGCCTCTGCATCTGATCGATGCATACGGCCAA--TTTTATTAATTATTAGCACAAAACCTTA
CAAAGTCGTACAACAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAACTGATGAAGGGGCGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACGAGGCCGCCTGCCGCATATGAGGCCGCCACAACCACCTACC
ATTAATCCATCTTCAGAGCTGTACTATTGCAACGGCCTTTCCCGGTCTCACTGCCGCCGACGCCACCACGACGCCAGACA
GCGTCGACCTCCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCGCCGCC
AAGAATATGCATAAAGA
>chr2D_3508
TTTCTT--------------------------------------------------------------------------
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-------------------------------------------------------------------------TTTTTAG
AAAAGGAGGAATACCCCCGGCCTCTGCATCTGATCGATGCATACGGCCAA--TTTTATTAATTATTAGCACAAAACCTTA
CAAAGTCGTACAACAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAACTGATGAAGGGGCGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCACAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACCAGGCCGCCTGCCGCGTATGAGGCCGCCACAACCACCTACC
ACTAATCCATCTTCAGAGCTGTACTGTTGCAACGGCCTTGCCCGGTCTCACTGCCGCCGACGCCACCACGACGCCAGACA
GCGTCGACCTCCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCGCCGCC
AAGAATATGCATAAAGA
>chr4D_3509
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---------------------------------------------------------------------TTTTTTTTTAG
AAAAGGAGGAATACCCCCGGCCTCTGCATCTGATCGATGCATACGGCCAA--TTTTATTAATTATTAGCACAAAATCTTA
CAAAGTCGTACAACAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAACTGATGAAGGGGCGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTTAACGAGGCCGCCTGCCGCGTATGAGGCCGCCACAACCACCTACC
ACTAATCCATCTTCAGAGCTGTACTGTTGCAACGGCCTTGCCCGGTCTCACTGCCGCCGACGCCACCACGACGCCAGACA
GCGTCGACCTCCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCACCGCC
AAGAATATGCATAAAGA
>chr1D_3509
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---------------------------------------------------------------------TTTTTTTTTAG
AAAAGGAGGAATATCCCCGGCCTCTGCATCTGATCGATGCATACGGCCAA--TTTTATTAATTATTAGCACAAAACCTTA
CAAAGTCGTACAACAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAACTGATGAAGGGGCGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACCAGGCCACCTGCCGCGTATGAGGCCGCCACAACCACCTACC
ACTAATCCATCTTCAGAGCTGTACTGTTGCAACGGCCTTGCCCGGTCTCACTGCCGCCGACGCCACCATGACGCCAGACA
GCGTCGACCTCCTGCGCGTGTCCGTCACAACACATCTGACGCCAAGCCTCCGCTGCTCAATGCCGCCAAGAGCCGCCGCC
AAGAATATGCATAAAGA
>chr1D_3509
--------------------------------------------------------------------------------
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---------------------------------------------------------------------TTTTTTTTTAG
AAAAGGAGGAATACCCCCGGCCTCTGCATCTGATCGATGCATACGGCCAA--TTT-ATTAATTATTAGCACAAAACCTTA
CAAAGTCGTACAACAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAACTGATGAAGGGGCGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACCAGGCCGCCTGCCGAGTATGAGGCCGCCACAACCACCTACC
ACATATCCATCTTCAGAGCTGTACTGTTGCAACGGCCTTGCCCGGTCTCGCTGCCGCCGACGCCACCACGACGCCAGACA
GCGTCGACCTCCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCGCCGCC
AAGAATATGTATAAAGA
>chr7D_3510
TTTTT---------------------------------------------------------------------------
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----------------------------------------------------------------------------TTTG
AAAAGGAGGAATACCCCCGGCCTCTGCATCTGATCGATGCATACGGCCAAATTTT-ATTAATTATTAGCACAAAACCTTA
CAAGGTCGTACAATAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAACTGATGAAGGGGCGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACGAGGCCGCCTGCCGCGTATGAGGCCGCCACAACCACCTACC
ACTAATCCATCTTCAGAGCTGTACTGTTGCAACGGCCTTGCCCGGTCTCACTGCCGCCGACGCCACCACGACGCCAGACA
GCGTCGACCTCCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCGCCGCC
AAGAATATGCATAAAGA
>chr7D_3513
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-------------------------------------------------------------------------TTTTTAG
AAAAGGAGGAATACCCCCGGCCTCTGCATCTGATCGATGCATACGGTCAA-TTTT-ATTAATTATTAGCACAAAACCTTA
CAAAGTCGTACAACAATAAGACCAAAGCCACCATCTTCGCAACTTCTGTCGCTATTCCTATCTAACTGATGAAGGGGCGC
TGATGGTCTGGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCTGGACGCCTG
CCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCCACCAGGCCGCCTGCCGCGTATGAAGCCGCCACCACCACCTACC
ACTAATCCATCTTCAGAGCTGTACTGTTGCAACGGCCTTGCCCGGTCTCACTGCCGCCGACGCCACCACGACGCCAGACA
GCGTCGACCTCCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCGCCGCC
AAGAATATGCATAAAGA
>SNPs
S----S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S----------------------------
-------------SSS----------------------------------S-------------S-------------SS
----------------------------------------------SSSSS------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S---S--------------S-------------S------------------------S---------SS---SSSSSSS
-----------------------------------S--------------------------------------------
-------------------------------------------------------------S-----S------------
-------------SSSSS------S----S--------------------------------------------------
-------------------------SSSSSS-----S-------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-----------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--S-S--SSS----
SSS-SSSS-----------------------------------------SSS------S---------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------S-----------------------------
------------------------------------S-------------------------------------------
--------------S-------------------------------------------S---------------------
-----------------S-----------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
------------------------------S---S----------------S-----------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
----------------S---------------------------------------------------------------
---------------------------------------------S-----------------S--S-------------
--------------------------------------------------------SS----------------------
----------------------------------------S--------------SSS-SSSSSSS-SSSS---------
------S----------------------------------S-S-------------------------S----------
----------S---------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------S---------------------SSSSSSSSSSSS--------------
-----------S--------------------S--S--------------------------------------------
--------------------------------------------S-----------------------------------
-------------------------------------------------S------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S--------
>forward_311
--------------------------------------------------------------------------------
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---------------------------------------------------GCCAGTCAGCCCAGGTTTAT---------
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-----------------
>reverse_1810
--------------------------------------------------------------------------------
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-------------------------------------------------GGTTGGTTTCGTTCTCGCAG-----------
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-----------------
>forward_1761
--------------------------------------------------------------------------------
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-------------------------------------------------------------TTGCCACCTCTCTTGCTCA
G-------------------------------------------------------------------------------
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-----------------
>reverse_3418
--------------------------------------------------------------------------------
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---------------------------------------------------------CTTCATCAAACGCCGCTTCC---
--------------------------------------------------------------------------------
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-----------------
