Multiple sequence alignment - TraesCS4D01G293000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G293000 chr4D 100.000 2693 0 0 1 2693 463918194 463920886 0.000000e+00 4974.0
1 TraesCS4D01G293000 chr4B 91.144 1705 77 15 1 1693 579458701 579460343 0.000000e+00 2244.0
2 TraesCS4D01G293000 chr4B 84.765 361 42 11 1698 2054 579460379 579460730 1.530000e-92 350.0
3 TraesCS4D01G293000 chr4B 81.188 101 14 5 2108 2205 525696108 525696206 2.880000e-10 76.8
4 TraesCS4D01G293000 chr4A 87.012 1101 113 21 605 1697 5982440 5983518 0.000000e+00 1214.0
5 TraesCS4D01G293000 chr4A 86.679 563 49 16 10 560 5984358 5983810 3.840000e-168 601.0
6 TraesCS4D01G293000 chr1A 84.267 464 47 15 2085 2539 443135817 443136263 1.920000e-116 429.0
7 TraesCS4D01G293000 chr5A 81.551 477 57 17 2085 2539 562542701 562543168 5.480000e-97 364.0
8 TraesCS4D01G293000 chr5A 87.313 268 23 10 1808 2069 659826644 659826906 2.030000e-76 296.0
9 TraesCS4D01G293000 chr3B 80.860 465 59 22 2085 2539 539658808 539658364 3.320000e-89 339.0
10 TraesCS4D01G293000 chr3B 85.965 285 33 7 1807 2088 258169503 258169783 5.640000e-77 298.0
11 TraesCS4D01G293000 chr2B 80.549 437 48 12 2105 2524 213033937 213033521 4.360000e-78 302.0
12 TraesCS4D01G293000 chr2B 83.737 289 35 11 1807 2088 763804778 763804495 2.060000e-66 263.0
13 TraesCS4D01G293000 chr2B 90.517 116 6 3 2428 2538 527586859 527586974 6.010000e-32 148.0
14 TraesCS4D01G293000 chr3D 84.797 296 36 9 1806 2099 580329776 580329488 3.390000e-74 289.0
15 TraesCS4D01G293000 chr3D 91.447 152 10 3 2543 2693 597862669 597862818 3.510000e-49 206.0
16 TraesCS4D01G293000 chr1D 86.415 265 26 9 1808 2069 442153872 442153615 5.680000e-72 281.0
17 TraesCS4D01G293000 chr1D 87.079 178 19 3 2518 2693 367843392 367843567 5.880000e-47 198.0
18 TraesCS4D01G293000 chr1D 90.260 154 12 2 2541 2693 384157399 384157248 5.880000e-47 198.0
19 TraesCS4D01G293000 chr1D 90.476 42 3 1 2108 2148 345454126 345454167 1.000000e-03 54.7
20 TraesCS4D01G293000 chr1D 96.774 31 1 0 2108 2138 345454648 345454678 5.000000e-03 52.8
21 TraesCS4D01G293000 chr2A 85.507 276 30 10 1800 2069 25129933 25129662 2.040000e-71 279.0
22 TraesCS4D01G293000 chr2A 89.308 159 15 2 2536 2693 398760820 398760977 5.880000e-47 198.0
23 TraesCS4D01G293000 chr2A 89.308 159 13 3 2536 2693 398569987 398569832 2.120000e-46 196.0
24 TraesCS4D01G293000 chr6D 85.985 264 31 6 1808 2069 324558185 324558444 7.340000e-71 278.0
25 TraesCS4D01G293000 chr6D 86.207 261 28 7 1811 2068 460390096 460389841 2.640000e-70 276.0
26 TraesCS4D01G293000 chr2D 85.714 266 34 4 1806 2069 64628057 64628320 7.340000e-71 278.0
27 TraesCS4D01G293000 chr2D 81.587 315 41 13 2228 2530 447838404 447838713 7.450000e-61 244.0
28 TraesCS4D01G293000 chr2D 91.667 156 11 2 2539 2693 621835896 621836050 5.840000e-52 215.0
29 TraesCS4D01G293000 chrUn 90.184 163 13 2 2532 2693 28721209 28721369 2.720000e-50 209.0
30 TraesCS4D01G293000 chr5D 90.850 153 11 2 2542 2693 334022844 334022994 4.550000e-48 202.0
31 TraesCS4D01G293000 chr1B 90.385 156 12 3 2540 2693 651908521 651908675 4.550000e-48 202.0
32 TraesCS4D01G293000 chr6B 73.391 233 38 18 2111 2336 493259996 493259781 6.220000e-07 65.8
33 TraesCS4D01G293000 chr6A 95.122 41 2 0 2051 2091 66750632 66750672 6.220000e-07 65.8
34 TraesCS4D01G293000 chr7B 77.686 121 13 11 2111 2224 595317095 595316982 8.050000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G293000 chr4D 463918194 463920886 2692 False 4974 4974 100.0000 1 2693 1 chr4D.!!$F1 2692
1 TraesCS4D01G293000 chr4B 579458701 579460730 2029 False 1297 2244 87.9545 1 2054 2 chr4B.!!$F2 2053
2 TraesCS4D01G293000 chr4A 5982440 5983518 1078 False 1214 1214 87.0120 605 1697 1 chr4A.!!$F1 1092
3 TraesCS4D01G293000 chr4A 5983810 5984358 548 True 601 601 86.6790 10 560 1 chr4A.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 961 0.248843 TATGTGCACATGAGCCACGA 59.751 50.0 36.72 15.73 37.15 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2617 2679 0.104855 AGCTTGCGACAAGTGACTCA 59.895 50.0 17.05 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 72 6.916360 AGTAATGTTTCCACATGTTCCATT 57.084 33.333 0.00 3.33 43.34 3.16
106 112 5.891551 GGTTGTGGGAATATATTTGACCTGT 59.108 40.000 0.00 0.00 0.00 4.00
142 155 1.511850 TTCACATGTTCCAGCGACTG 58.488 50.000 0.00 0.00 0.00 3.51
149 162 0.601558 GTTCCAGCGACTGACCACTA 59.398 55.000 8.20 0.00 32.44 2.74
151 164 1.215647 CCAGCGACTGACCACTACC 59.784 63.158 8.20 0.00 32.44 3.18
152 165 1.154016 CAGCGACTGACCACTACCG 60.154 63.158 1.18 0.00 32.44 4.02
276 291 2.123897 ACGGTGTTTGGCTGCCTT 60.124 55.556 21.03 0.00 0.00 4.35
285 300 0.951558 TTGGCTGCCTTTTTCTCGAC 59.048 50.000 21.03 0.00 0.00 4.20
335 350 4.067896 TCATCTTGTCAAGAGCTGTTTCC 58.932 43.478 19.64 0.00 41.61 3.13
340 355 0.401738 TCAAGAGCTGTTTCCCCCTG 59.598 55.000 0.00 0.00 0.00 4.45
343 358 1.376649 AGAGCTGTTTCCCCCTGAAT 58.623 50.000 0.00 0.00 31.67 2.57
437 453 1.872952 CGAACTGCATTTGTGACAGGA 59.127 47.619 0.00 0.00 35.70 3.86
442 458 4.910195 ACTGCATTTGTGACAGGATAGAA 58.090 39.130 0.00 0.00 35.70 2.10
445 461 5.316167 TGCATTTGTGACAGGATAGAAACT 58.684 37.500 0.00 0.00 0.00 2.66
447 463 5.645497 GCATTTGTGACAGGATAGAAACTCT 59.355 40.000 0.00 0.00 0.00 3.24
538 554 5.163864 TGCTGTTTCTGATACTAATGTTGCG 60.164 40.000 0.17 0.00 0.00 4.85
560 576 6.420903 TGCGTGCTTATGAGATTGAACTATAC 59.579 38.462 0.00 0.00 0.00 1.47
561 577 6.420903 GCGTGCTTATGAGATTGAACTATACA 59.579 38.462 0.00 0.00 0.00 2.29
562 578 7.042725 GCGTGCTTATGAGATTGAACTATACAA 60.043 37.037 0.00 0.00 0.00 2.41
563 579 8.269424 CGTGCTTATGAGATTGAACTATACAAC 58.731 37.037 0.00 0.00 0.00 3.32
564 580 8.269424 GTGCTTATGAGATTGAACTATACAACG 58.731 37.037 0.00 0.00 0.00 4.10
565 581 7.438160 TGCTTATGAGATTGAACTATACAACGG 59.562 37.037 0.00 0.00 0.00 4.44
566 582 7.438459 GCTTATGAGATTGAACTATACAACGGT 59.562 37.037 0.00 0.00 0.00 4.83
567 583 9.961265 CTTATGAGATTGAACTATACAACGGTA 57.039 33.333 0.00 0.00 0.00 4.02
568 584 9.740239 TTATGAGATTGAACTATACAACGGTAC 57.260 33.333 0.00 0.00 30.94 3.34
645 663 6.631962 AGTTTTCCAGAGTAATAGGAAGTCG 58.368 40.000 0.00 0.00 41.97 4.18
668 686 8.336080 GTCGGAAGGAAATGTTAGAATATGTTC 58.664 37.037 0.00 0.00 34.46 3.18
689 707 5.591643 TCGTGTTTAGATGAGTTTTCTGC 57.408 39.130 0.00 0.00 0.00 4.26
788 806 6.069673 ACCCTCCATCATCAAAAGTGTGTATA 60.070 38.462 0.00 0.00 0.00 1.47
888 908 0.251077 AGCTCCACAAAGCCCAAGAG 60.251 55.000 0.00 0.00 43.56 2.85
921 941 2.297033 GTGACACCCTGATTGCACATTT 59.703 45.455 0.00 0.00 0.00 2.32
939 959 3.574284 TTTTATGTGCACATGAGCCAC 57.426 42.857 36.72 10.86 37.15 5.01
941 961 0.248843 TATGTGCACATGAGCCACGA 59.751 50.000 36.72 15.73 37.15 4.35
943 963 1.669115 GTGCACATGAGCCACGACT 60.669 57.895 13.17 0.00 0.00 4.18
944 964 1.668793 TGCACATGAGCCACGACTG 60.669 57.895 12.78 0.00 0.00 3.51
945 965 3.031964 GCACATGAGCCACGACTGC 62.032 63.158 3.43 0.00 0.00 4.40
946 966 1.375140 CACATGAGCCACGACTGCT 60.375 57.895 0.00 0.00 43.03 4.24
947 967 1.375140 ACATGAGCCACGACTGCTG 60.375 57.895 0.00 0.00 39.69 4.41
948 968 1.079612 CATGAGCCACGACTGCTGA 60.080 57.895 0.00 0.00 39.69 4.26
949 969 0.671472 CATGAGCCACGACTGCTGAA 60.671 55.000 0.00 0.00 39.69 3.02
981 1001 2.099263 TGATCCTACGTACTGCAAGAGC 59.901 50.000 0.00 0.00 42.57 4.09
995 1015 2.161211 GCAAGAGCAGCGAATTCTTTCT 59.839 45.455 3.52 0.00 41.58 2.52
1004 1031 4.514441 CAGCGAATTCTTTCTAGCCATGAT 59.486 41.667 3.52 0.00 0.00 2.45
1006 1033 4.512944 GCGAATTCTTTCTAGCCATGATCA 59.487 41.667 0.00 0.00 0.00 2.92
1011 1038 2.602257 TTCTAGCCATGATCACCACG 57.398 50.000 0.00 0.00 0.00 4.94
1012 1039 0.752658 TCTAGCCATGATCACCACGG 59.247 55.000 0.00 0.00 0.00 4.94
1015 1042 2.896854 CCATGATCACCACGGCCG 60.897 66.667 26.86 26.86 0.00 6.13
1059 1086 2.102252 AGCCATCCTTTCTCTCGTCATC 59.898 50.000 0.00 0.00 0.00 2.92
1079 1106 2.159043 TCATCATCTTCTTCTCCACCGC 60.159 50.000 0.00 0.00 0.00 5.68
1112 1139 1.378778 CCGACCTCCTCCTCGACTT 60.379 63.158 0.00 0.00 31.24 3.01
1117 1144 0.967887 CCTCCTCCTCGACTTCTGCA 60.968 60.000 0.00 0.00 0.00 4.41
1516 1546 1.291184 CTTCATGCGCAACGAGGACA 61.291 55.000 17.11 0.00 0.00 4.02
1626 1656 4.742201 CTGCCCGACGAGGTGGTG 62.742 72.222 0.00 0.00 38.74 4.17
1724 1785 5.388944 GGCTACTCCGTACATAATTACTCG 58.611 45.833 0.00 0.00 0.00 4.18
1825 1886 3.770933 ACATACTAGCAAAAGGGTCCGTA 59.229 43.478 0.00 0.00 0.00 4.02
1830 1891 0.236449 GCAAAAGGGTCCGTACGTTG 59.764 55.000 15.21 10.95 0.00 4.10
1831 1892 1.585297 CAAAAGGGTCCGTACGTTGT 58.415 50.000 15.21 0.00 0.00 3.32
1834 1895 3.467374 AAAGGGTCCGTACGTTGTAAA 57.533 42.857 15.21 0.00 0.00 2.01
1835 1896 2.730550 AGGGTCCGTACGTTGTAAAG 57.269 50.000 15.21 0.00 0.00 1.85
1837 1898 1.672737 GGGTCCGTACGTTGTAAAGGG 60.673 57.143 15.21 0.00 35.69 3.95
1841 1902 2.890311 TCCGTACGTTGTAAAGGGAGAA 59.110 45.455 15.21 0.00 35.69 2.87
1842 1903 3.320541 TCCGTACGTTGTAAAGGGAGAAA 59.679 43.478 15.21 0.00 35.69 2.52
1843 1904 4.057432 CCGTACGTTGTAAAGGGAGAAAA 58.943 43.478 15.21 0.00 35.69 2.29
1844 1905 4.511082 CCGTACGTTGTAAAGGGAGAAAAA 59.489 41.667 15.21 0.00 35.69 1.94
1903 1964 4.480541 CTGCATCACCGAGATACACTATC 58.519 47.826 0.00 0.00 34.43 2.08
1904 1965 3.255888 TGCATCACCGAGATACACTATCC 59.744 47.826 0.00 0.00 34.43 2.59
1905 1966 3.508012 GCATCACCGAGATACACTATCCT 59.492 47.826 0.00 0.00 34.43 3.24
1906 1967 4.700692 GCATCACCGAGATACACTATCCTA 59.299 45.833 0.00 0.00 34.43 2.94
1922 1983 9.046296 ACACTATCCTATCAATTTCGTGAAATC 57.954 33.333 8.19 0.00 39.88 2.17
1924 1985 9.784531 ACTATCCTATCAATTTCGTGAAATCAT 57.215 29.630 8.19 6.62 39.88 2.45
1927 1988 8.504812 TCCTATCAATTTCGTGAAATCATGAA 57.495 30.769 12.78 12.78 46.63 2.57
1936 1997 6.070897 TCGTGAAATCATGAACATGTGTTT 57.929 33.333 13.35 14.24 38.80 2.83
1938 1999 7.815641 TCGTGAAATCATGAACATGTGTTTAT 58.184 30.769 13.35 0.00 38.80 1.40
1943 2004 9.425893 GAAATCATGAACATGTGTTTATACTCG 57.574 33.333 13.35 0.00 38.56 4.18
1951 2012 4.919677 TGTGTTTATACTCGTGCACATG 57.080 40.909 18.64 11.01 32.79 3.21
1966 2027 4.681025 GTGCACATGTTTGAAATCGTGAAT 59.319 37.500 13.17 0.00 0.00 2.57
1972 2033 9.941991 CACATGTTTGAAATCGTGAATATTTTC 57.058 29.630 0.00 0.00 0.00 2.29
1973 2034 9.689976 ACATGTTTGAAATCGTGAATATTTTCA 57.310 25.926 0.00 0.00 39.54 2.69
2079 2141 7.401484 TTGTAAACATTTTTCTTGAATCGGC 57.599 32.000 0.00 0.00 0.00 5.54
2080 2142 5.627367 TGTAAACATTTTTCTTGAATCGGCG 59.373 36.000 0.00 0.00 0.00 6.46
2081 2143 4.497473 AACATTTTTCTTGAATCGGCGA 57.503 36.364 13.87 13.87 0.00 5.54
2082 2144 4.497473 ACATTTTTCTTGAATCGGCGAA 57.503 36.364 15.93 0.00 0.00 4.70
2083 2145 4.226761 ACATTTTTCTTGAATCGGCGAAC 58.773 39.130 15.93 12.16 0.00 3.95
2084 2146 3.972950 TTTTTCTTGAATCGGCGAACA 57.027 38.095 15.93 14.86 0.00 3.18
2085 2147 4.497473 TTTTTCTTGAATCGGCGAACAT 57.503 36.364 15.93 2.74 0.00 2.71
2086 2148 4.497473 TTTTCTTGAATCGGCGAACATT 57.503 36.364 15.93 3.16 0.00 2.71
2087 2149 4.497473 TTTCTTGAATCGGCGAACATTT 57.503 36.364 15.93 2.70 0.00 2.32
2088 2150 3.740044 TCTTGAATCGGCGAACATTTC 57.260 42.857 15.93 13.91 0.00 2.17
2089 2151 3.334691 TCTTGAATCGGCGAACATTTCT 58.665 40.909 15.93 0.00 0.00 2.52
2090 2152 4.500127 TCTTGAATCGGCGAACATTTCTA 58.500 39.130 15.93 9.22 0.00 2.10
2091 2153 4.932799 TCTTGAATCGGCGAACATTTCTAA 59.067 37.500 15.93 9.14 0.00 2.10
2092 2154 5.584649 TCTTGAATCGGCGAACATTTCTAAT 59.415 36.000 15.93 0.00 0.00 1.73
2093 2155 6.759356 TCTTGAATCGGCGAACATTTCTAATA 59.241 34.615 15.93 0.00 0.00 0.98
2094 2156 6.912203 TGAATCGGCGAACATTTCTAATAA 57.088 33.333 15.93 0.00 0.00 1.40
2095 2157 7.310072 TGAATCGGCGAACATTTCTAATAAA 57.690 32.000 15.93 0.00 0.00 1.40
2096 2158 7.753659 TGAATCGGCGAACATTTCTAATAAAA 58.246 30.769 15.93 0.00 0.00 1.52
2097 2159 8.237949 TGAATCGGCGAACATTTCTAATAAAAA 58.762 29.630 15.93 0.00 0.00 1.94
2139 2201 9.671279 AAAGTTCATTGATTTTGAGAAAAAGGT 57.329 25.926 0.00 0.00 33.47 3.50
2140 2202 9.671279 AAGTTCATTGATTTTGAGAAAAAGGTT 57.329 25.926 0.00 0.00 33.47 3.50
2141 2203 9.671279 AGTTCATTGATTTTGAGAAAAAGGTTT 57.329 25.926 0.00 0.00 33.47 3.27
2144 2206 9.243637 TCATTGATTTTGAGAAAAAGGTTTACG 57.756 29.630 0.00 0.00 33.47 3.18
2145 2207 7.995463 TTGATTTTGAGAAAAAGGTTTACGG 57.005 32.000 0.00 0.00 33.47 4.02
2146 2208 7.336161 TGATTTTGAGAAAAAGGTTTACGGA 57.664 32.000 0.00 0.00 33.47 4.69
2147 2209 7.947282 TGATTTTGAGAAAAAGGTTTACGGAT 58.053 30.769 0.00 0.00 33.47 4.18
2148 2210 8.417884 TGATTTTGAGAAAAAGGTTTACGGATT 58.582 29.630 0.00 0.00 33.47 3.01
2149 2211 9.256477 GATTTTGAGAAAAAGGTTTACGGATTT 57.744 29.630 0.00 0.00 33.47 2.17
2150 2212 9.607988 ATTTTGAGAAAAAGGTTTACGGATTTT 57.392 25.926 0.00 0.00 33.47 1.82
2179 2241 9.463443 AGAAAAAGTTCATGAATACGGAAAAAG 57.537 29.630 12.12 0.00 36.09 2.27
2180 2242 9.244799 GAAAAAGTTCATGAATACGGAAAAAGT 57.755 29.630 12.12 0.00 33.61 2.66
2181 2243 9.594478 AAAAAGTTCATGAATACGGAAAAAGTT 57.406 25.926 12.12 0.00 0.00 2.66
2182 2244 8.797266 AAAGTTCATGAATACGGAAAAAGTTC 57.203 30.769 12.12 0.00 0.00 3.01
2183 2245 7.504924 AGTTCATGAATACGGAAAAAGTTCA 57.495 32.000 12.12 0.00 35.25 3.18
2184 2246 7.360361 AGTTCATGAATACGGAAAAAGTTCAC 58.640 34.615 12.12 0.00 35.25 3.18
2185 2247 6.249035 TCATGAATACGGAAAAAGTTCACC 57.751 37.500 0.00 0.00 35.25 4.02
2186 2248 5.765677 TCATGAATACGGAAAAAGTTCACCA 59.234 36.000 0.00 0.00 35.25 4.17
2187 2249 6.263392 TCATGAATACGGAAAAAGTTCACCAA 59.737 34.615 0.00 0.00 35.25 3.67
2188 2250 6.642707 TGAATACGGAAAAAGTTCACCAAT 57.357 33.333 0.00 0.00 35.25 3.16
2189 2251 7.045126 TGAATACGGAAAAAGTTCACCAATT 57.955 32.000 0.00 0.00 35.25 2.32
2190 2252 7.493367 TGAATACGGAAAAAGTTCACCAATTT 58.507 30.769 0.00 0.00 35.25 1.82
2191 2253 7.982354 TGAATACGGAAAAAGTTCACCAATTTT 59.018 29.630 0.00 0.00 35.25 1.82
2192 2254 7.707774 ATACGGAAAAAGTTCACCAATTTTG 57.292 32.000 0.00 0.00 35.25 2.44
2193 2255 5.725362 ACGGAAAAAGTTCACCAATTTTGA 58.275 33.333 0.00 0.00 35.25 2.69
2194 2256 6.166982 ACGGAAAAAGTTCACCAATTTTGAA 58.833 32.000 0.00 0.00 35.25 2.69
2195 2257 6.651225 ACGGAAAAAGTTCACCAATTTTGAAA 59.349 30.769 1.58 0.00 34.78 2.69
2196 2258 7.173390 ACGGAAAAAGTTCACCAATTTTGAAAA 59.827 29.630 0.00 0.00 34.78 2.29
2197 2259 8.017946 CGGAAAAAGTTCACCAATTTTGAAAAA 58.982 29.630 0.00 0.00 34.78 1.94
2219 2281 4.992381 AAAGTTCACGAATTCGAAGAGG 57.008 40.909 33.05 16.09 43.02 3.69
2220 2282 3.662247 AGTTCACGAATTCGAAGAGGT 57.338 42.857 33.05 16.74 43.02 3.85
2221 2283 3.991367 AGTTCACGAATTCGAAGAGGTT 58.009 40.909 33.05 15.29 43.02 3.50
2222 2284 3.988517 AGTTCACGAATTCGAAGAGGTTC 59.011 43.478 33.05 18.28 43.02 3.62
2223 2285 3.653539 TCACGAATTCGAAGAGGTTCA 57.346 42.857 33.05 6.36 43.02 3.18
2224 2286 3.314553 TCACGAATTCGAAGAGGTTCAC 58.685 45.455 33.05 0.00 43.02 3.18
2225 2287 2.090658 CACGAATTCGAAGAGGTTCACG 59.909 50.000 33.05 3.79 43.02 4.35
2226 2288 1.654105 CGAATTCGAAGAGGTTCACGG 59.346 52.381 23.29 0.00 43.02 4.94
2227 2289 2.000447 GAATTCGAAGAGGTTCACGGG 59.000 52.381 3.35 0.00 38.43 5.28
2228 2290 1.263356 ATTCGAAGAGGTTCACGGGA 58.737 50.000 3.35 0.00 38.43 5.14
2229 2291 1.042229 TTCGAAGAGGTTCACGGGAA 58.958 50.000 0.00 0.00 38.43 3.97
2230 2292 1.042229 TCGAAGAGGTTCACGGGAAA 58.958 50.000 0.00 0.00 34.13 3.13
2231 2293 1.413445 TCGAAGAGGTTCACGGGAAAA 59.587 47.619 0.00 0.00 34.13 2.29
2232 2294 2.158928 TCGAAGAGGTTCACGGGAAAAA 60.159 45.455 0.00 0.00 34.13 1.94
2255 2317 9.971744 AAAAAGTTCATCGATTTTGTGAAAAAG 57.028 25.926 0.00 0.00 34.04 2.27
2256 2318 7.698836 AAGTTCATCGATTTTGTGAAAAAGG 57.301 32.000 0.00 0.00 34.04 3.11
2257 2319 6.805713 AGTTCATCGATTTTGTGAAAAAGGT 58.194 32.000 0.00 0.00 34.04 3.50
2258 2320 7.264947 AGTTCATCGATTTTGTGAAAAAGGTT 58.735 30.769 0.00 0.00 34.04 3.50
2259 2321 7.435192 AGTTCATCGATTTTGTGAAAAAGGTTC 59.565 33.333 0.00 0.00 34.04 3.62
2260 2322 6.800543 TCATCGATTTTGTGAAAAAGGTTCA 58.199 32.000 0.00 0.00 33.47 3.18
2261 2323 6.695278 TCATCGATTTTGTGAAAAAGGTTCAC 59.305 34.615 11.39 11.39 46.57 3.18
2272 2334 8.696410 GTGAAAAAGGTTCACACATCTTTTAA 57.304 30.769 13.02 0.00 45.89 1.52
2273 2335 9.145865 GTGAAAAAGGTTCACACATCTTTTAAA 57.854 29.630 13.02 0.00 45.89 1.52
2274 2336 9.712305 TGAAAAAGGTTCACACATCTTTTAAAA 57.288 25.926 0.00 0.00 38.14 1.52
2277 2339 9.936759 AAAAGGTTCACACATCTTTTAAAAAGA 57.063 25.926 1.66 0.00 37.57 2.52
2278 2340 9.586435 AAAGGTTCACACATCTTTTAAAAAGAG 57.414 29.630 1.66 0.00 0.00 2.85
2279 2341 7.716612 AGGTTCACACATCTTTTAAAAAGAGG 58.283 34.615 0.00 0.00 34.55 3.69
2280 2342 7.559897 AGGTTCACACATCTTTTAAAAAGAGGA 59.440 33.333 1.40 7.24 32.88 3.71
2281 2343 8.194769 GGTTCACACATCTTTTAAAAAGAGGAA 58.805 33.333 1.40 5.87 32.88 3.36
2282 2344 9.020813 GTTCACACATCTTTTAAAAAGAGGAAC 57.979 33.333 1.40 11.65 32.88 3.62
2283 2345 8.287439 TCACACATCTTTTAAAAAGAGGAACA 57.713 30.769 1.40 0.00 32.88 3.18
2284 2346 8.744652 TCACACATCTTTTAAAAAGAGGAACAA 58.255 29.630 1.40 0.00 32.88 2.83
2285 2347 9.023967 CACACATCTTTTAAAAAGAGGAACAAG 57.976 33.333 1.40 0.19 32.88 3.16
2286 2348 8.966868 ACACATCTTTTAAAAAGAGGAACAAGA 58.033 29.630 1.40 5.04 32.88 3.02
2287 2349 9.801873 CACATCTTTTAAAAAGAGGAACAAGAA 57.198 29.630 1.40 0.00 32.88 2.52
2315 2377 8.684386 AAAGAAGAAGAAAGGTAGAAGAAAGG 57.316 34.615 0.00 0.00 0.00 3.11
2316 2378 7.619512 AGAAGAAGAAAGGTAGAAGAAAGGA 57.380 36.000 0.00 0.00 0.00 3.36
2317 2379 8.035448 AGAAGAAGAAAGGTAGAAGAAAGGAA 57.965 34.615 0.00 0.00 0.00 3.36
2318 2380 8.495260 AGAAGAAGAAAGGTAGAAGAAAGGAAA 58.505 33.333 0.00 0.00 0.00 3.13
2319 2381 8.684386 AAGAAGAAAGGTAGAAGAAAGGAAAG 57.316 34.615 0.00 0.00 0.00 2.62
2320 2382 8.035448 AGAAGAAAGGTAGAAGAAAGGAAAGA 57.965 34.615 0.00 0.00 0.00 2.52
2321 2383 8.495260 AGAAGAAAGGTAGAAGAAAGGAAAGAA 58.505 33.333 0.00 0.00 0.00 2.52
2322 2384 9.121658 GAAGAAAGGTAGAAGAAAGGAAAGAAA 57.878 33.333 0.00 0.00 0.00 2.52
2323 2385 8.684386 AGAAAGGTAGAAGAAAGGAAAGAAAG 57.316 34.615 0.00 0.00 0.00 2.62
2324 2386 8.495260 AGAAAGGTAGAAGAAAGGAAAGAAAGA 58.505 33.333 0.00 0.00 0.00 2.52
2325 2387 9.121658 GAAAGGTAGAAGAAAGGAAAGAAAGAA 57.878 33.333 0.00 0.00 0.00 2.52
2326 2388 8.684386 AAGGTAGAAGAAAGGAAAGAAAGAAG 57.316 34.615 0.00 0.00 0.00 2.85
2327 2389 6.712998 AGGTAGAAGAAAGGAAAGAAAGAAGC 59.287 38.462 0.00 0.00 0.00 3.86
2328 2390 6.486993 GGTAGAAGAAAGGAAAGAAAGAAGCA 59.513 38.462 0.00 0.00 0.00 3.91
2329 2391 7.013369 GGTAGAAGAAAGGAAAGAAAGAAGCAA 59.987 37.037 0.00 0.00 0.00 3.91
2330 2392 7.410120 AGAAGAAAGGAAAGAAAGAAGCAAA 57.590 32.000 0.00 0.00 0.00 3.68
2331 2393 7.487484 AGAAGAAAGGAAAGAAAGAAGCAAAG 58.513 34.615 0.00 0.00 0.00 2.77
2332 2394 6.154203 AGAAAGGAAAGAAAGAAGCAAAGG 57.846 37.500 0.00 0.00 0.00 3.11
2333 2395 4.944619 AAGGAAAGAAAGAAGCAAAGGG 57.055 40.909 0.00 0.00 0.00 3.95
2334 2396 4.184649 AGGAAAGAAAGAAGCAAAGGGA 57.815 40.909 0.00 0.00 0.00 4.20
2335 2397 4.546674 AGGAAAGAAAGAAGCAAAGGGAA 58.453 39.130 0.00 0.00 0.00 3.97
2336 2398 4.586421 AGGAAAGAAAGAAGCAAAGGGAAG 59.414 41.667 0.00 0.00 0.00 3.46
2337 2399 4.342378 GGAAAGAAAGAAGCAAAGGGAAGT 59.658 41.667 0.00 0.00 0.00 3.01
2338 2400 5.535030 GGAAAGAAAGAAGCAAAGGGAAGTA 59.465 40.000 0.00 0.00 0.00 2.24
2339 2401 6.040504 GGAAAGAAAGAAGCAAAGGGAAGTAA 59.959 38.462 0.00 0.00 0.00 2.24
2340 2402 6.392625 AAGAAAGAAGCAAAGGGAAGTAAC 57.607 37.500 0.00 0.00 0.00 2.50
2341 2403 5.445964 AGAAAGAAGCAAAGGGAAGTAACA 58.554 37.500 0.00 0.00 0.00 2.41
2342 2404 5.891551 AGAAAGAAGCAAAGGGAAGTAACAA 59.108 36.000 0.00 0.00 0.00 2.83
2343 2405 6.379988 AGAAAGAAGCAAAGGGAAGTAACAAA 59.620 34.615 0.00 0.00 0.00 2.83
2344 2406 6.731292 AAGAAGCAAAGGGAAGTAACAAAT 57.269 33.333 0.00 0.00 0.00 2.32
2345 2407 6.332735 AGAAGCAAAGGGAAGTAACAAATC 57.667 37.500 0.00 0.00 0.00 2.17
2346 2408 5.833131 AGAAGCAAAGGGAAGTAACAAATCA 59.167 36.000 0.00 0.00 0.00 2.57
2347 2409 5.453567 AGCAAAGGGAAGTAACAAATCAC 57.546 39.130 0.00 0.00 0.00 3.06
2348 2410 4.892934 AGCAAAGGGAAGTAACAAATCACA 59.107 37.500 0.00 0.00 0.00 3.58
2349 2411 5.539955 AGCAAAGGGAAGTAACAAATCACAT 59.460 36.000 0.00 0.00 0.00 3.21
2350 2412 5.634859 GCAAAGGGAAGTAACAAATCACATG 59.365 40.000 0.00 0.00 0.00 3.21
2351 2413 6.516527 GCAAAGGGAAGTAACAAATCACATGA 60.517 38.462 0.00 0.00 0.00 3.07
2352 2414 6.575162 AAGGGAAGTAACAAATCACATGAC 57.425 37.500 0.00 0.00 0.00 3.06
2353 2415 4.695455 AGGGAAGTAACAAATCACATGACG 59.305 41.667 0.00 0.00 0.00 4.35
2354 2416 4.454504 GGGAAGTAACAAATCACATGACGT 59.545 41.667 0.00 0.00 0.00 4.34
2356 2418 5.356882 AAGTAACAAATCACATGACGTGG 57.643 39.130 0.00 0.00 46.36 4.94
2357 2419 3.751175 AGTAACAAATCACATGACGTGGG 59.249 43.478 0.00 0.00 46.36 4.61
2358 2420 2.270352 ACAAATCACATGACGTGGGT 57.730 45.000 0.00 0.00 46.36 4.51
2359 2421 2.582052 ACAAATCACATGACGTGGGTT 58.418 42.857 0.00 0.00 46.36 4.11
2360 2422 2.293122 ACAAATCACATGACGTGGGTTG 59.707 45.455 0.00 0.00 46.36 3.77
2361 2423 2.270352 AATCACATGACGTGGGTTGT 57.730 45.000 0.00 0.00 46.36 3.32
2362 2424 1.808411 ATCACATGACGTGGGTTGTC 58.192 50.000 0.00 0.00 46.36 3.18
2363 2425 0.756294 TCACATGACGTGGGTTGTCT 59.244 50.000 0.00 0.00 46.36 3.41
2364 2426 1.964933 TCACATGACGTGGGTTGTCTA 59.035 47.619 0.00 0.00 46.36 2.59
2365 2427 2.029380 TCACATGACGTGGGTTGTCTAG 60.029 50.000 0.00 0.00 46.36 2.43
2366 2428 1.968493 ACATGACGTGGGTTGTCTAGT 59.032 47.619 0.00 0.00 37.26 2.57
2367 2429 2.367567 ACATGACGTGGGTTGTCTAGTT 59.632 45.455 0.00 0.00 37.26 2.24
2368 2430 2.519377 TGACGTGGGTTGTCTAGTTG 57.481 50.000 0.00 0.00 37.26 3.16
2369 2431 1.069513 TGACGTGGGTTGTCTAGTTGG 59.930 52.381 0.00 0.00 37.26 3.77
2370 2432 1.069668 GACGTGGGTTGTCTAGTTGGT 59.930 52.381 0.00 0.00 33.54 3.67
2371 2433 1.487558 ACGTGGGTTGTCTAGTTGGTT 59.512 47.619 0.00 0.00 0.00 3.67
2372 2434 2.699846 ACGTGGGTTGTCTAGTTGGTTA 59.300 45.455 0.00 0.00 0.00 2.85
2373 2435 3.325716 ACGTGGGTTGTCTAGTTGGTTAT 59.674 43.478 0.00 0.00 0.00 1.89
2374 2436 3.682858 CGTGGGTTGTCTAGTTGGTTATG 59.317 47.826 0.00 0.00 0.00 1.90
2375 2437 4.007659 GTGGGTTGTCTAGTTGGTTATGG 58.992 47.826 0.00 0.00 0.00 2.74
2376 2438 3.653836 TGGGTTGTCTAGTTGGTTATGGT 59.346 43.478 0.00 0.00 0.00 3.55
2377 2439 4.845225 TGGGTTGTCTAGTTGGTTATGGTA 59.155 41.667 0.00 0.00 0.00 3.25
2378 2440 5.046159 TGGGTTGTCTAGTTGGTTATGGTAG 60.046 44.000 0.00 0.00 0.00 3.18
2379 2441 4.874396 GGTTGTCTAGTTGGTTATGGTAGC 59.126 45.833 0.00 0.00 0.00 3.58
2380 2442 5.338137 GGTTGTCTAGTTGGTTATGGTAGCT 60.338 44.000 0.00 0.00 0.00 3.32
2381 2443 6.127253 GGTTGTCTAGTTGGTTATGGTAGCTA 60.127 42.308 0.00 0.00 0.00 3.32
2382 2444 6.461110 TGTCTAGTTGGTTATGGTAGCTAC 57.539 41.667 15.88 15.88 0.00 3.58
2383 2445 5.361857 TGTCTAGTTGGTTATGGTAGCTACC 59.638 44.000 32.37 32.37 46.62 3.18
2384 2446 4.897670 TCTAGTTGGTTATGGTAGCTACCC 59.102 45.833 34.76 21.37 45.87 3.69
2385 2447 2.775960 AGTTGGTTATGGTAGCTACCCC 59.224 50.000 34.76 28.15 45.87 4.95
2386 2448 1.810455 TGGTTATGGTAGCTACCCCC 58.190 55.000 34.76 27.51 45.87 5.40
2387 2449 0.683412 GGTTATGGTAGCTACCCCCG 59.317 60.000 34.76 0.00 45.87 5.73
2388 2450 1.708341 GTTATGGTAGCTACCCCCGA 58.292 55.000 34.76 20.01 45.87 5.14
2389 2451 1.617357 GTTATGGTAGCTACCCCCGAG 59.383 57.143 34.76 0.00 45.87 4.63
2390 2452 0.541296 TATGGTAGCTACCCCCGAGC 60.541 60.000 34.76 12.91 45.87 5.03
2391 2453 3.603671 GGTAGCTACCCCCGAGCG 61.604 72.222 29.68 0.00 44.98 5.03
2392 2454 2.517875 GTAGCTACCCCCGAGCGA 60.518 66.667 13.20 0.00 44.98 4.93
2393 2455 2.203308 TAGCTACCCCCGAGCGAG 60.203 66.667 0.00 0.00 44.98 5.03
2394 2456 3.786884 TAGCTACCCCCGAGCGAGG 62.787 68.421 0.00 0.00 44.98 4.63
2396 2458 2.907917 CTACCCCCGAGCGAGGAG 60.908 72.222 1.91 0.00 0.00 3.69
2397 2459 4.517934 TACCCCCGAGCGAGGAGG 62.518 72.222 1.91 0.79 0.00 4.30
2407 2469 2.809601 CGAGGAGGTCGCGGTTTG 60.810 66.667 6.13 0.00 43.03 2.93
2408 2470 2.654877 GAGGAGGTCGCGGTTTGA 59.345 61.111 6.13 0.00 0.00 2.69
2409 2471 1.005394 GAGGAGGTCGCGGTTTGAA 60.005 57.895 6.13 0.00 0.00 2.69
2410 2472 0.391263 GAGGAGGTCGCGGTTTGAAT 60.391 55.000 6.13 0.00 0.00 2.57
2411 2473 0.391263 AGGAGGTCGCGGTTTGAATC 60.391 55.000 6.13 0.00 0.00 2.52
2412 2474 0.391263 GGAGGTCGCGGTTTGAATCT 60.391 55.000 6.13 0.00 0.00 2.40
2413 2475 1.000145 GAGGTCGCGGTTTGAATCTC 59.000 55.000 6.13 0.00 0.00 2.75
2414 2476 0.320374 AGGTCGCGGTTTGAATCTCA 59.680 50.000 6.13 0.00 0.00 3.27
2415 2477 0.442699 GGTCGCGGTTTGAATCTCAC 59.557 55.000 6.13 0.00 0.00 3.51
2416 2478 0.442699 GTCGCGGTTTGAATCTCACC 59.557 55.000 6.13 0.00 0.00 4.02
2417 2479 0.672401 TCGCGGTTTGAATCTCACCC 60.672 55.000 6.13 0.00 0.00 4.61
2418 2480 1.794222 GCGGTTTGAATCTCACCCG 59.206 57.895 8.77 8.77 41.45 5.28
2419 2481 1.794222 CGGTTTGAATCTCACCCGC 59.206 57.895 2.16 0.00 35.34 6.13
2420 2482 0.953471 CGGTTTGAATCTCACCCGCA 60.953 55.000 2.16 0.00 35.34 5.69
2421 2483 0.521735 GGTTTGAATCTCACCCGCAC 59.478 55.000 0.00 0.00 0.00 5.34
2422 2484 1.234821 GTTTGAATCTCACCCGCACA 58.765 50.000 0.00 0.00 0.00 4.57
2423 2485 1.197721 GTTTGAATCTCACCCGCACAG 59.802 52.381 0.00 0.00 0.00 3.66
2424 2486 0.684535 TTGAATCTCACCCGCACAGA 59.315 50.000 0.00 0.00 0.00 3.41
2425 2487 0.247460 TGAATCTCACCCGCACAGAG 59.753 55.000 0.00 0.00 0.00 3.35
2426 2488 1.078848 AATCTCACCCGCACAGAGC 60.079 57.895 0.00 0.00 40.87 4.09
2427 2489 1.548357 AATCTCACCCGCACAGAGCT 61.548 55.000 0.00 0.00 42.61 4.09
2428 2490 1.548357 ATCTCACCCGCACAGAGCTT 61.548 55.000 0.00 0.00 42.61 3.74
2429 2491 1.302033 CTCACCCGCACAGAGCTTT 60.302 57.895 0.00 0.00 42.61 3.51
2430 2492 0.886490 CTCACCCGCACAGAGCTTTT 60.886 55.000 0.00 0.00 42.61 2.27
2431 2493 0.465460 TCACCCGCACAGAGCTTTTT 60.465 50.000 0.00 0.00 42.61 1.94
2432 2494 0.318107 CACCCGCACAGAGCTTTTTG 60.318 55.000 0.00 0.00 42.61 2.44
2433 2495 1.372128 CCCGCACAGAGCTTTTTGC 60.372 57.895 5.34 5.34 42.61 3.68
2434 2496 1.372128 CCGCACAGAGCTTTTTGCC 60.372 57.895 9.56 0.00 44.23 4.52
2435 2497 1.372128 CGCACAGAGCTTTTTGCCC 60.372 57.895 9.56 0.00 44.23 5.36
2436 2498 1.799258 CGCACAGAGCTTTTTGCCCT 61.799 55.000 9.56 0.00 44.23 5.19
2437 2499 0.390492 GCACAGAGCTTTTTGCCCTT 59.610 50.000 4.07 0.00 44.23 3.95
2438 2500 1.202568 GCACAGAGCTTTTTGCCCTTT 60.203 47.619 4.07 0.00 44.23 3.11
2439 2501 2.035832 GCACAGAGCTTTTTGCCCTTTA 59.964 45.455 4.07 0.00 44.23 1.85
2440 2502 3.492482 GCACAGAGCTTTTTGCCCTTTAA 60.492 43.478 4.07 0.00 44.23 1.52
2441 2503 4.692228 CACAGAGCTTTTTGCCCTTTAAA 58.308 39.130 0.00 0.00 44.23 1.52
2442 2504 5.115480 CACAGAGCTTTTTGCCCTTTAAAA 58.885 37.500 0.00 0.00 44.23 1.52
2443 2505 5.006649 CACAGAGCTTTTTGCCCTTTAAAAC 59.993 40.000 0.00 0.00 44.23 2.43
2444 2506 5.115480 CAGAGCTTTTTGCCCTTTAAAACA 58.885 37.500 0.00 0.00 44.23 2.83
2445 2507 5.234972 CAGAGCTTTTTGCCCTTTAAAACAG 59.765 40.000 0.00 0.00 44.23 3.16
2446 2508 4.450976 AGCTTTTTGCCCTTTAAAACAGG 58.549 39.130 0.00 0.00 44.23 4.00
2447 2509 4.163268 AGCTTTTTGCCCTTTAAAACAGGA 59.837 37.500 3.38 0.00 44.23 3.86
2448 2510 4.878971 GCTTTTTGCCCTTTAAAACAGGAA 59.121 37.500 3.38 0.00 32.41 3.36
2449 2511 5.355630 GCTTTTTGCCCTTTAAAACAGGAAA 59.644 36.000 3.38 0.16 32.41 3.13
2450 2512 6.127869 GCTTTTTGCCCTTTAAAACAGGAAAA 60.128 34.615 6.94 6.94 32.41 2.29
2451 2513 7.416213 GCTTTTTGCCCTTTAAAACAGGAAAAT 60.416 33.333 10.10 0.00 32.41 1.82
2452 2514 7.561021 TTTTGCCCTTTAAAACAGGAAAATC 57.439 32.000 5.85 0.00 32.41 2.17
2453 2515 4.877282 TGCCCTTTAAAACAGGAAAATCG 58.123 39.130 3.38 0.00 32.41 3.34
2454 2516 4.242475 GCCCTTTAAAACAGGAAAATCGG 58.758 43.478 3.38 0.00 32.41 4.18
2455 2517 4.021807 GCCCTTTAAAACAGGAAAATCGGA 60.022 41.667 3.38 0.00 32.41 4.55
2456 2518 5.337250 GCCCTTTAAAACAGGAAAATCGGAT 60.337 40.000 3.38 0.00 32.41 4.18
2457 2519 6.127563 GCCCTTTAAAACAGGAAAATCGGATA 60.128 38.462 0.00 0.00 32.41 2.59
2458 2520 7.577998 GCCCTTTAAAACAGGAAAATCGGATAA 60.578 37.037 0.00 0.00 32.41 1.75
2459 2521 8.308207 CCCTTTAAAACAGGAAAATCGGATAAA 58.692 33.333 0.00 0.00 32.41 1.40
2460 2522 9.869757 CCTTTAAAACAGGAAAATCGGATAAAT 57.130 29.630 0.00 0.00 32.41 1.40
2462 2524 9.646427 TTTAAAACAGGAAAATCGGATAAATGG 57.354 29.630 0.00 0.00 0.00 3.16
2463 2525 5.852282 AACAGGAAAATCGGATAAATGGG 57.148 39.130 0.00 0.00 0.00 4.00
2464 2526 3.636764 ACAGGAAAATCGGATAAATGGGC 59.363 43.478 0.00 0.00 0.00 5.36
2465 2527 3.005791 CAGGAAAATCGGATAAATGGGCC 59.994 47.826 0.00 0.00 0.00 5.80
2466 2528 2.030274 GGAAAATCGGATAAATGGGCCG 60.030 50.000 0.00 0.00 46.08 6.13
2467 2529 1.616159 AAATCGGATAAATGGGCCGG 58.384 50.000 0.00 0.00 44.87 6.13
2468 2530 0.893727 AATCGGATAAATGGGCCGGC 60.894 55.000 21.18 21.18 44.87 6.13
2469 2531 2.764637 ATCGGATAAATGGGCCGGCC 62.765 60.000 38.57 38.57 44.87 6.13
2484 2546 3.961414 GCCCAACGTGGAAGGGGA 61.961 66.667 14.98 0.00 43.57 4.81
2485 2547 2.351276 CCCAACGTGGAAGGGGAG 59.649 66.667 7.54 0.00 43.57 4.30
2486 2548 2.351276 CCAACGTGGAAGGGGAGG 59.649 66.667 0.00 0.00 40.96 4.30
2487 2549 2.526046 CCAACGTGGAAGGGGAGGT 61.526 63.158 0.00 0.00 40.96 3.85
2488 2550 1.302511 CAACGTGGAAGGGGAGGTG 60.303 63.158 0.00 0.00 0.00 4.00
2489 2551 1.768888 AACGTGGAAGGGGAGGTGT 60.769 57.895 0.00 0.00 0.00 4.16
2490 2552 2.052047 AACGTGGAAGGGGAGGTGTG 62.052 60.000 0.00 0.00 0.00 3.82
2491 2553 2.516888 CGTGGAAGGGGAGGTGTGT 61.517 63.158 0.00 0.00 0.00 3.72
2492 2554 1.073199 GTGGAAGGGGAGGTGTGTG 59.927 63.158 0.00 0.00 0.00 3.82
2493 2555 2.034221 GGAAGGGGAGGTGTGTGC 59.966 66.667 0.00 0.00 0.00 4.57
2494 2556 2.034221 GAAGGGGAGGTGTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
2498 2560 4.265056 GGGAGGTGTGTGCCCGTT 62.265 66.667 0.00 0.00 31.06 4.44
2499 2561 2.203294 GGAGGTGTGTGCCCGTTT 60.203 61.111 0.00 0.00 0.00 3.60
2500 2562 2.551912 GGAGGTGTGTGCCCGTTTG 61.552 63.158 0.00 0.00 0.00 2.93
2501 2563 1.822186 GAGGTGTGTGCCCGTTTGT 60.822 57.895 0.00 0.00 0.00 2.83
2502 2564 2.058829 GAGGTGTGTGCCCGTTTGTG 62.059 60.000 0.00 0.00 0.00 3.33
2503 2565 2.411290 GTGTGTGCCCGTTTGTGG 59.589 61.111 0.00 0.00 0.00 4.17
2504 2566 2.115911 GTGTGTGCCCGTTTGTGGA 61.116 57.895 0.00 0.00 0.00 4.02
2505 2567 1.378646 TGTGTGCCCGTTTGTGGAA 60.379 52.632 0.00 0.00 0.00 3.53
2506 2568 0.965866 TGTGTGCCCGTTTGTGGAAA 60.966 50.000 0.00 0.00 0.00 3.13
2507 2569 0.173708 GTGTGCCCGTTTGTGGAAAA 59.826 50.000 0.00 0.00 0.00 2.29
2508 2570 0.173708 TGTGCCCGTTTGTGGAAAAC 59.826 50.000 0.00 0.00 0.00 2.43
2518 2580 4.603985 GTTTGTGGAAAACGAAGTAAGGG 58.396 43.478 0.00 0.00 45.00 3.95
2519 2581 2.853705 TGTGGAAAACGAAGTAAGGGG 58.146 47.619 0.00 0.00 45.00 4.79
2520 2582 1.538512 GTGGAAAACGAAGTAAGGGGC 59.461 52.381 0.00 0.00 45.00 5.80
2521 2583 0.800631 GGAAAACGAAGTAAGGGGCG 59.199 55.000 0.00 0.00 45.00 6.13
2522 2584 0.167470 GAAAACGAAGTAAGGGGCGC 59.833 55.000 0.00 0.00 45.00 6.53
2523 2585 0.535553 AAAACGAAGTAAGGGGCGCA 60.536 50.000 10.83 0.00 45.00 6.09
2524 2586 0.953960 AAACGAAGTAAGGGGCGCAG 60.954 55.000 10.83 0.00 45.00 5.18
2525 2587 1.823169 AACGAAGTAAGGGGCGCAGA 61.823 55.000 10.83 0.00 45.00 4.26
2526 2588 1.079405 CGAAGTAAGGGGCGCAGAA 60.079 57.895 10.83 0.00 0.00 3.02
2527 2589 1.084370 CGAAGTAAGGGGCGCAGAAG 61.084 60.000 10.83 0.00 0.00 2.85
2528 2590 0.744771 GAAGTAAGGGGCGCAGAAGG 60.745 60.000 10.83 0.00 0.00 3.46
2529 2591 2.821679 AAGTAAGGGGCGCAGAAGGC 62.822 60.000 10.83 0.00 39.90 4.35
2538 2600 3.324035 GCAGAAGGCGCCGAATAG 58.676 61.111 23.20 12.61 0.00 1.73
2539 2601 2.886782 GCAGAAGGCGCCGAATAGC 61.887 63.158 23.20 18.76 0.00 2.97
2551 2613 4.992381 GCCGAATAGCGAAATCACTAAT 57.008 40.909 0.00 0.00 44.57 1.73
2552 2614 5.344207 GCCGAATAGCGAAATCACTAATT 57.656 39.130 0.00 0.00 44.57 1.40
2553 2615 5.140177 GCCGAATAGCGAAATCACTAATTG 58.860 41.667 0.00 0.00 44.57 2.32
2554 2616 5.050363 GCCGAATAGCGAAATCACTAATTGA 60.050 40.000 0.00 0.00 44.57 2.57
2555 2617 6.584954 CCGAATAGCGAAATCACTAATTGAG 58.415 40.000 0.00 0.00 44.57 3.02
2556 2618 6.346919 CCGAATAGCGAAATCACTAATTGAGG 60.347 42.308 0.00 0.00 44.57 3.86
2557 2619 6.420903 CGAATAGCGAAATCACTAATTGAGGA 59.579 38.462 0.00 0.00 44.57 3.71
2558 2620 7.358765 CGAATAGCGAAATCACTAATTGAGGAG 60.359 40.741 0.00 0.00 44.57 3.69
2559 2621 5.091261 AGCGAAATCACTAATTGAGGAGT 57.909 39.130 0.00 0.00 37.77 3.85
2560 2622 6.222038 AGCGAAATCACTAATTGAGGAGTA 57.778 37.500 0.00 0.00 37.77 2.59
2561 2623 6.043411 AGCGAAATCACTAATTGAGGAGTAC 58.957 40.000 0.00 0.00 37.77 2.73
2562 2624 6.043411 GCGAAATCACTAATTGAGGAGTACT 58.957 40.000 0.00 0.00 37.77 2.73
2563 2625 6.199342 GCGAAATCACTAATTGAGGAGTACTC 59.801 42.308 14.87 14.87 46.78 2.59
2573 2635 3.299340 GAGGAGTACTCGTTGCAAAGA 57.701 47.619 18.54 14.45 36.29 2.52
2574 2636 3.851098 GAGGAGTACTCGTTGCAAAGAT 58.149 45.455 18.54 8.63 36.29 2.40
2575 2637 3.851098 AGGAGTACTCGTTGCAAAGATC 58.149 45.455 15.52 9.90 0.00 2.75
2576 2638 3.258372 AGGAGTACTCGTTGCAAAGATCA 59.742 43.478 15.52 3.95 0.00 2.92
2577 2639 3.368236 GGAGTACTCGTTGCAAAGATCAC 59.632 47.826 15.52 14.91 0.00 3.06
2578 2640 4.238514 GAGTACTCGTTGCAAAGATCACT 58.761 43.478 20.90 20.90 0.00 3.41
2579 2641 4.238514 AGTACTCGTTGCAAAGATCACTC 58.761 43.478 15.52 5.56 0.00 3.51
2580 2642 2.417719 ACTCGTTGCAAAGATCACTCC 58.582 47.619 15.52 0.00 0.00 3.85
2581 2643 1.734465 CTCGTTGCAAAGATCACTCCC 59.266 52.381 15.52 0.00 0.00 4.30
2582 2644 1.071542 TCGTTGCAAAGATCACTCCCA 59.928 47.619 11.22 0.00 0.00 4.37
2583 2645 1.197721 CGTTGCAAAGATCACTCCCAC 59.802 52.381 6.52 0.00 0.00 4.61
2584 2646 1.541588 GTTGCAAAGATCACTCCCACC 59.458 52.381 0.00 0.00 0.00 4.61
2585 2647 1.067295 TGCAAAGATCACTCCCACCT 58.933 50.000 0.00 0.00 0.00 4.00
2586 2648 1.425066 TGCAAAGATCACTCCCACCTT 59.575 47.619 0.00 0.00 0.00 3.50
2587 2649 2.158475 TGCAAAGATCACTCCCACCTTT 60.158 45.455 0.00 0.00 0.00 3.11
2588 2650 2.489722 GCAAAGATCACTCCCACCTTTC 59.510 50.000 0.00 0.00 0.00 2.62
2589 2651 3.084786 CAAAGATCACTCCCACCTTTCC 58.915 50.000 0.00 0.00 0.00 3.13
2590 2652 2.044793 AGATCACTCCCACCTTTCCA 57.955 50.000 0.00 0.00 0.00 3.53
2591 2653 1.912043 AGATCACTCCCACCTTTCCAG 59.088 52.381 0.00 0.00 0.00 3.86
2601 2663 3.322514 CCTTTCCAGGTTGCGAGAA 57.677 52.632 0.00 0.00 35.06 2.87
2602 2664 1.160137 CCTTTCCAGGTTGCGAGAAG 58.840 55.000 0.00 0.00 35.06 2.85
2603 2665 1.543429 CCTTTCCAGGTTGCGAGAAGT 60.543 52.381 0.00 0.00 35.06 3.01
2604 2666 1.532868 CTTTCCAGGTTGCGAGAAGTG 59.467 52.381 0.00 0.00 0.00 3.16
2605 2667 0.250295 TTCCAGGTTGCGAGAAGTGG 60.250 55.000 0.00 0.00 0.00 4.00
2606 2668 2.328099 CCAGGTTGCGAGAAGTGGC 61.328 63.158 0.00 0.00 0.00 5.01
2607 2669 2.357517 AGGTTGCGAGAAGTGGCG 60.358 61.111 0.00 0.00 0.00 5.69
2622 2684 2.548292 GCGCGCTGCATATGAGTC 59.452 61.111 26.67 0.00 45.45 3.36
2623 2685 2.239812 GCGCGCTGCATATGAGTCA 61.240 57.895 26.67 0.00 45.45 3.41
2624 2686 1.561730 CGCGCTGCATATGAGTCAC 59.438 57.895 6.97 0.00 0.00 3.67
2625 2687 0.873312 CGCGCTGCATATGAGTCACT 60.873 55.000 6.97 0.00 0.00 3.41
2626 2688 1.293924 GCGCTGCATATGAGTCACTT 58.706 50.000 6.97 0.00 0.00 3.16
2627 2689 1.004185 GCGCTGCATATGAGTCACTTG 60.004 52.381 6.97 0.00 0.00 3.16
2628 2690 2.274437 CGCTGCATATGAGTCACTTGT 58.726 47.619 6.97 0.00 0.00 3.16
2629 2691 2.283617 CGCTGCATATGAGTCACTTGTC 59.716 50.000 6.97 0.00 0.00 3.18
2630 2692 2.283617 GCTGCATATGAGTCACTTGTCG 59.716 50.000 6.97 0.00 0.00 4.35
2631 2693 2.270923 TGCATATGAGTCACTTGTCGC 58.729 47.619 6.97 0.00 0.00 5.19
2632 2694 2.270923 GCATATGAGTCACTTGTCGCA 58.729 47.619 6.97 0.00 0.00 5.10
2633 2695 2.672874 GCATATGAGTCACTTGTCGCAA 59.327 45.455 6.97 0.00 0.00 4.85
2634 2696 3.242220 GCATATGAGTCACTTGTCGCAAG 60.242 47.826 6.97 15.16 0.00 4.01
2635 2697 1.151668 ATGAGTCACTTGTCGCAAGC 58.848 50.000 16.24 4.34 37.18 4.01
2636 2698 0.104855 TGAGTCACTTGTCGCAAGCT 59.895 50.000 16.24 8.13 37.18 3.74
2637 2699 0.510359 GAGTCACTTGTCGCAAGCTG 59.490 55.000 16.24 13.68 37.18 4.24
2638 2700 0.882042 AGTCACTTGTCGCAAGCTGG 60.882 55.000 16.24 8.84 37.18 4.85
2639 2701 0.880278 GTCACTTGTCGCAAGCTGGA 60.880 55.000 16.24 10.50 37.18 3.86
2640 2702 0.601046 TCACTTGTCGCAAGCTGGAG 60.601 55.000 16.24 0.00 37.18 3.86
2641 2703 0.882042 CACTTGTCGCAAGCTGGAGT 60.882 55.000 16.24 0.00 37.18 3.85
2642 2704 0.179045 ACTTGTCGCAAGCTGGAGTT 60.179 50.000 16.24 0.00 37.18 3.01
2643 2705 0.947244 CTTGTCGCAAGCTGGAGTTT 59.053 50.000 0.00 0.00 37.18 2.66
2644 2706 1.334869 CTTGTCGCAAGCTGGAGTTTT 59.665 47.619 0.00 0.00 37.18 2.43
2645 2707 0.944386 TGTCGCAAGCTGGAGTTTTC 59.056 50.000 0.00 0.00 37.18 2.29
2646 2708 0.238553 GTCGCAAGCTGGAGTTTTCC 59.761 55.000 0.00 0.00 40.06 3.13
2647 2709 0.889186 TCGCAAGCTGGAGTTTTCCC 60.889 55.000 0.00 0.00 39.25 3.97
2648 2710 0.890996 CGCAAGCTGGAGTTTTCCCT 60.891 55.000 0.00 0.00 43.33 4.20
2649 2711 1.332195 GCAAGCTGGAGTTTTCCCTT 58.668 50.000 0.00 0.00 43.33 3.95
2650 2712 1.688735 GCAAGCTGGAGTTTTCCCTTT 59.311 47.619 0.00 0.00 43.33 3.11
2651 2713 2.103094 GCAAGCTGGAGTTTTCCCTTTT 59.897 45.455 0.00 0.00 43.33 2.27
2652 2714 3.432186 GCAAGCTGGAGTTTTCCCTTTTT 60.432 43.478 0.00 0.00 43.33 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 12 7.361201 CGGTTCAAGAATGTTCTCATAACATGT 60.361 37.037 4.27 0.00 40.43 3.21
26 32 1.878953 ACTAGGCAACACGGTTCAAG 58.121 50.000 0.00 0.00 41.41 3.02
66 72 5.943416 CCCACAACCTGATGTAGTTATTTCA 59.057 40.000 0.00 0.00 30.84 2.69
106 112 3.146066 GTGAAAACAGTACCAGGCATCA 58.854 45.455 0.00 0.00 0.00 3.07
149 162 1.227556 GTCACCTGCAGTTCACGGT 60.228 57.895 13.81 0.00 0.00 4.83
151 164 2.078849 TATGTCACCTGCAGTTCACG 57.921 50.000 13.81 0.00 0.00 4.35
152 165 3.426695 GCAATATGTCACCTGCAGTTCAC 60.427 47.826 13.81 6.11 34.87 3.18
192 207 2.086869 GCTTGTGTGTCATACTGGCAT 58.913 47.619 1.16 0.00 33.03 4.40
198 213 2.947852 ACGAGAGCTTGTGTGTCATAC 58.052 47.619 0.00 0.00 0.00 2.39
276 291 4.446385 ACATTCGTCAAATCGTCGAGAAAA 59.554 37.500 0.00 0.00 36.54 2.29
285 300 2.478514 TGGTGACACATTCGTCAAATCG 59.521 45.455 8.08 0.00 46.99 3.34
335 350 1.004044 ACAGCTCTTGACATTCAGGGG 59.996 52.381 0.00 0.00 0.00 4.79
340 355 5.444122 GTGTTACAACAGCTCTTGACATTC 58.556 41.667 8.85 0.00 40.05 2.67
389 405 4.453136 TGCATAAACGTACAAGAACCCTTC 59.547 41.667 0.00 0.00 0.00 3.46
464 480 6.899089 TCCCATCTTAAGCTTCATTCACATA 58.101 36.000 0.00 0.00 0.00 2.29
519 535 4.935205 AGCACGCAACATTAGTATCAGAAA 59.065 37.500 0.00 0.00 0.00 2.52
538 554 8.269424 CGTTGTATAGTTCAATCTCATAAGCAC 58.731 37.037 0.00 0.00 0.00 4.40
560 576 2.437200 TACTTGAACCCGTACCGTTG 57.563 50.000 0.00 0.00 0.00 4.10
561 577 2.102252 TGTTACTTGAACCCGTACCGTT 59.898 45.455 0.00 0.00 37.22 4.44
562 578 1.686052 TGTTACTTGAACCCGTACCGT 59.314 47.619 0.00 0.00 37.22 4.83
563 579 2.437200 TGTTACTTGAACCCGTACCG 57.563 50.000 0.00 0.00 37.22 4.02
564 580 5.694231 AATTTGTTACTTGAACCCGTACC 57.306 39.130 0.00 0.00 37.22 3.34
565 581 8.934825 TGTATAATTTGTTACTTGAACCCGTAC 58.065 33.333 0.00 0.00 37.22 3.67
566 582 9.499479 TTGTATAATTTGTTACTTGAACCCGTA 57.501 29.630 0.00 0.00 37.22 4.02
567 583 7.982761 TGTATAATTTGTTACTTGAACCCGT 57.017 32.000 0.00 0.00 37.22 5.28
568 584 9.284594 CATTGTATAATTTGTTACTTGAACCCG 57.715 33.333 0.00 0.00 37.22 5.28
569 585 9.083080 GCATTGTATAATTTGTTACTTGAACCC 57.917 33.333 0.00 0.00 37.22 4.11
570 586 9.083080 GGCATTGTATAATTTGTTACTTGAACC 57.917 33.333 0.00 0.00 37.22 3.62
571 587 9.632807 TGGCATTGTATAATTTGTTACTTGAAC 57.367 29.630 0.00 0.00 38.65 3.18
580 596 5.611128 TGGCATGGCATTGTATAATTTGT 57.389 34.783 19.43 0.00 0.00 2.83
645 663 8.122952 CACGAACATATTCTAACATTTCCTTCC 58.877 37.037 0.00 0.00 32.12 3.46
668 686 5.406780 AGAGCAGAAAACTCATCTAAACACG 59.593 40.000 0.00 0.00 36.58 4.49
675 693 4.530161 ACCTACAGAGCAGAAAACTCATCT 59.470 41.667 0.00 0.00 36.58 2.90
689 707 7.510549 TGGAATCTTTTTGAAACCTACAGAG 57.489 36.000 0.00 0.00 0.00 3.35
788 806 2.686118 GCCTTGCCTTGGAGAATGAGAT 60.686 50.000 0.00 0.00 0.00 2.75
862 880 1.860484 GCTTTGTGGAGCTGGCAGAC 61.860 60.000 20.86 11.09 39.57 3.51
888 908 1.630148 GGTGTCACTCGAGCATGTAC 58.370 55.000 13.61 8.20 0.00 2.90
921 941 1.085893 CGTGGCTCATGTGCACATAA 58.914 50.000 30.92 17.72 34.26 1.90
941 961 5.216918 GATCAGTGATCAGCATTCAGCAGT 61.217 45.833 25.19 0.00 39.85 4.40
943 963 3.203716 GATCAGTGATCAGCATTCAGCA 58.796 45.455 25.19 0.00 39.85 4.41
944 964 2.548904 GGATCAGTGATCAGCATTCAGC 59.451 50.000 29.56 9.41 40.50 4.26
945 965 4.074627 AGGATCAGTGATCAGCATTCAG 57.925 45.455 29.56 0.00 40.50 3.02
946 966 4.500375 CGTAGGATCAGTGATCAGCATTCA 60.500 45.833 29.56 7.65 40.50 2.57
947 967 3.986572 CGTAGGATCAGTGATCAGCATTC 59.013 47.826 29.56 14.28 40.50 2.67
948 968 3.386078 ACGTAGGATCAGTGATCAGCATT 59.614 43.478 29.56 14.29 40.50 3.56
949 969 2.961741 ACGTAGGATCAGTGATCAGCAT 59.038 45.455 29.56 16.69 40.50 3.79
981 1001 3.873361 TCATGGCTAGAAAGAATTCGCTG 59.127 43.478 0.00 0.00 40.63 5.18
992 1012 1.138859 CCGTGGTGATCATGGCTAGAA 59.861 52.381 0.00 0.00 44.70 2.10
1004 1031 4.386951 CATGGTCGGCCGTGGTGA 62.387 66.667 27.15 1.01 45.72 4.02
1015 1042 2.592861 GATGGGAGCGGCATGGTC 60.593 66.667 1.45 0.00 44.49 4.02
1028 1055 2.281345 GGATGGCTCCAGCGATGG 60.281 66.667 15.12 15.12 39.59 3.51
1059 1086 2.208431 GCGGTGGAGAAGAAGATGATG 58.792 52.381 0.00 0.00 0.00 3.07
1079 1106 4.760047 CGGGGTCGGAGTTGCAGG 62.760 72.222 0.00 0.00 0.00 4.85
1095 1122 0.393267 AGAAGTCGAGGAGGAGGTCG 60.393 60.000 0.00 0.00 37.54 4.79
1105 1132 2.226896 CGGCGATGCAGAAGTCGAG 61.227 63.158 11.43 1.00 40.11 4.04
1112 1139 3.743636 TCGTGTCGGCGATGCAGA 61.744 61.111 14.79 8.05 35.83 4.26
1238 1268 2.317609 TTGAAGCCGAAGAGCGTGC 61.318 57.895 0.00 0.00 38.67 5.34
1623 1653 2.814280 TCCTGAACGTCTTCTTCACC 57.186 50.000 0.00 0.00 0.00 4.02
1626 1656 3.254892 GGTGATCCTGAACGTCTTCTTC 58.745 50.000 0.00 0.00 0.00 2.87
1724 1785 1.080025 GACCCCTGTCGTAGCACAC 60.080 63.158 0.00 0.00 0.00 3.82
1739 1800 3.121126 CGATCGCGTACAATATTTGGACC 60.121 47.826 5.77 0.00 41.61 4.46
1811 1872 0.236449 CAACGTACGGACCCTTTTGC 59.764 55.000 21.06 0.00 0.00 3.68
1820 1881 2.513753 TCTCCCTTTACAACGTACGGA 58.486 47.619 21.06 2.57 0.00 4.69
1821 1882 3.302365 TTCTCCCTTTACAACGTACGG 57.698 47.619 21.06 5.00 0.00 4.02
1866 1927 2.442212 TGCAGCAAAATGTGGTCATG 57.558 45.000 0.00 0.00 35.13 3.07
1883 1944 3.508012 AGGATAGTGTATCTCGGTGATGC 59.492 47.826 2.94 2.36 38.12 3.91
1903 1964 8.183536 TGTTCATGATTTCACGAAATTGATAGG 58.816 33.333 6.47 0.00 40.77 2.57
1904 1965 9.726232 ATGTTCATGATTTCACGAAATTGATAG 57.274 29.630 6.47 0.00 40.77 2.08
1905 1966 9.505995 CATGTTCATGATTTCACGAAATTGATA 57.494 29.630 6.94 1.95 40.77 2.15
1906 1967 8.030692 ACATGTTCATGATTTCACGAAATTGAT 58.969 29.630 17.96 0.60 40.77 2.57
1922 1983 5.959527 GCACGAGTATAAACACATGTTCATG 59.040 40.000 10.72 10.72 37.25 3.07
1924 1985 4.991687 TGCACGAGTATAAACACATGTTCA 59.008 37.500 0.00 0.00 37.25 3.18
1925 1986 5.107259 TGTGCACGAGTATAAACACATGTTC 60.107 40.000 13.13 0.00 37.25 3.18
1927 1988 4.311606 TGTGCACGAGTATAAACACATGT 58.688 39.130 13.13 0.00 33.41 3.21
1928 1989 4.919677 TGTGCACGAGTATAAACACATG 57.080 40.909 13.13 0.00 33.41 3.21
1929 1990 4.935205 ACATGTGCACGAGTATAAACACAT 59.065 37.500 13.13 0.00 46.56 3.21
1931 1992 4.921470 ACATGTGCACGAGTATAAACAC 57.079 40.909 13.13 0.00 0.00 3.32
1932 1993 5.467063 TCAAACATGTGCACGAGTATAAACA 59.533 36.000 13.13 0.00 0.00 2.83
1933 1994 5.922546 TCAAACATGTGCACGAGTATAAAC 58.077 37.500 13.13 0.00 0.00 2.01
1936 1997 6.454981 CGATTTCAAACATGTGCACGAGTATA 60.455 38.462 13.13 0.00 0.00 1.47
1938 1999 4.376920 CGATTTCAAACATGTGCACGAGTA 60.377 41.667 13.13 0.00 0.00 2.59
1943 2004 3.626977 TCACGATTTCAAACATGTGCAC 58.373 40.909 10.75 10.75 0.00 4.57
2054 2116 7.306283 CGCCGATTCAAGAAAAATGTTTACAAA 60.306 33.333 0.00 0.00 0.00 2.83
2055 2117 6.143118 CGCCGATTCAAGAAAAATGTTTACAA 59.857 34.615 0.00 0.00 0.00 2.41
2056 2118 5.627367 CGCCGATTCAAGAAAAATGTTTACA 59.373 36.000 0.00 0.00 0.00 2.41
2057 2119 5.854338 TCGCCGATTCAAGAAAAATGTTTAC 59.146 36.000 0.00 0.00 0.00 2.01
2058 2120 6.003234 TCGCCGATTCAAGAAAAATGTTTA 57.997 33.333 0.00 0.00 0.00 2.01
2059 2121 4.865776 TCGCCGATTCAAGAAAAATGTTT 58.134 34.783 0.00 0.00 0.00 2.83
2060 2122 4.497473 TCGCCGATTCAAGAAAAATGTT 57.503 36.364 0.00 0.00 0.00 2.71
2061 2123 4.226761 GTTCGCCGATTCAAGAAAAATGT 58.773 39.130 0.00 0.00 0.00 2.71
2062 2124 4.225984 TGTTCGCCGATTCAAGAAAAATG 58.774 39.130 0.00 0.00 0.00 2.32
2063 2125 4.497473 TGTTCGCCGATTCAAGAAAAAT 57.503 36.364 0.00 0.00 0.00 1.82
2064 2126 3.972950 TGTTCGCCGATTCAAGAAAAA 57.027 38.095 0.00 0.00 0.00 1.94
2065 2127 4.497473 AATGTTCGCCGATTCAAGAAAA 57.503 36.364 0.00 0.00 0.00 2.29
2066 2128 4.215399 AGAAATGTTCGCCGATTCAAGAAA 59.785 37.500 1.56 0.00 34.02 2.52
2067 2129 3.751175 AGAAATGTTCGCCGATTCAAGAA 59.249 39.130 1.56 0.00 34.02 2.52
2068 2130 3.334691 AGAAATGTTCGCCGATTCAAGA 58.665 40.909 1.56 0.00 34.02 3.02
2069 2131 3.747099 AGAAATGTTCGCCGATTCAAG 57.253 42.857 1.56 0.00 34.02 3.02
2070 2132 5.811399 ATTAGAAATGTTCGCCGATTCAA 57.189 34.783 1.56 0.00 34.02 2.69
2071 2133 6.912203 TTATTAGAAATGTTCGCCGATTCA 57.088 33.333 1.56 0.00 34.02 2.57
2072 2134 8.609478 TTTTTATTAGAAATGTTCGCCGATTC 57.391 30.769 0.00 0.00 34.02 2.52
2113 2175 9.671279 ACCTTTTTCTCAAAATCAATGAACTTT 57.329 25.926 0.00 0.00 31.28 2.66
2114 2176 9.671279 AACCTTTTTCTCAAAATCAATGAACTT 57.329 25.926 0.00 0.00 31.28 2.66
2115 2177 9.671279 AAACCTTTTTCTCAAAATCAATGAACT 57.329 25.926 0.00 0.00 31.28 3.01
2118 2180 9.243637 CGTAAACCTTTTTCTCAAAATCAATGA 57.756 29.630 0.00 0.00 31.28 2.57
2119 2181 8.487176 CCGTAAACCTTTTTCTCAAAATCAATG 58.513 33.333 0.00 0.00 31.28 2.82
2120 2182 8.417884 TCCGTAAACCTTTTTCTCAAAATCAAT 58.582 29.630 0.00 0.00 31.28 2.57
2121 2183 7.773149 TCCGTAAACCTTTTTCTCAAAATCAA 58.227 30.769 0.00 0.00 31.28 2.57
2122 2184 7.336161 TCCGTAAACCTTTTTCTCAAAATCA 57.664 32.000 0.00 0.00 31.28 2.57
2123 2185 8.812147 AATCCGTAAACCTTTTTCTCAAAATC 57.188 30.769 0.00 0.00 31.28 2.17
2124 2186 9.607988 AAAATCCGTAAACCTTTTTCTCAAAAT 57.392 25.926 0.00 0.00 31.28 1.82
2153 2215 9.463443 CTTTTTCCGTATTCATGAACTTTTTCT 57.537 29.630 11.07 0.00 32.36 2.52
2154 2216 9.244799 ACTTTTTCCGTATTCATGAACTTTTTC 57.755 29.630 11.07 0.00 0.00 2.29
2155 2217 9.594478 AACTTTTTCCGTATTCATGAACTTTTT 57.406 25.926 11.07 0.00 0.00 1.94
2156 2218 9.244799 GAACTTTTTCCGTATTCATGAACTTTT 57.755 29.630 11.07 0.00 0.00 2.27
2157 2219 8.410141 TGAACTTTTTCCGTATTCATGAACTTT 58.590 29.630 11.07 0.00 0.00 2.66
2158 2220 7.860872 GTGAACTTTTTCCGTATTCATGAACTT 59.139 33.333 11.07 0.00 32.30 2.66
2159 2221 7.360361 GTGAACTTTTTCCGTATTCATGAACT 58.640 34.615 11.07 3.09 32.30 3.01
2160 2222 6.581166 GGTGAACTTTTTCCGTATTCATGAAC 59.419 38.462 11.07 0.00 32.30 3.18
2161 2223 6.263392 TGGTGAACTTTTTCCGTATTCATGAA 59.737 34.615 11.26 11.26 32.30 2.57
2162 2224 5.765677 TGGTGAACTTTTTCCGTATTCATGA 59.234 36.000 0.00 0.00 32.30 3.07
2163 2225 6.007936 TGGTGAACTTTTTCCGTATTCATG 57.992 37.500 0.00 0.00 32.30 3.07
2164 2226 6.642707 TTGGTGAACTTTTTCCGTATTCAT 57.357 33.333 0.00 0.00 32.30 2.57
2165 2227 6.642707 ATTGGTGAACTTTTTCCGTATTCA 57.357 33.333 0.00 0.00 0.00 2.57
2166 2228 7.940178 AAATTGGTGAACTTTTTCCGTATTC 57.060 32.000 0.00 0.00 0.00 1.75
2167 2229 7.982354 TCAAAATTGGTGAACTTTTTCCGTATT 59.018 29.630 0.00 0.00 0.00 1.89
2168 2230 7.493367 TCAAAATTGGTGAACTTTTTCCGTAT 58.507 30.769 0.00 0.00 0.00 3.06
2169 2231 6.864342 TCAAAATTGGTGAACTTTTTCCGTA 58.136 32.000 0.00 0.00 0.00 4.02
2170 2232 5.725362 TCAAAATTGGTGAACTTTTTCCGT 58.275 33.333 0.00 0.00 0.00 4.69
2171 2233 6.654793 TTCAAAATTGGTGAACTTTTTCCG 57.345 33.333 1.60 0.00 30.08 4.30
2196 2258 5.296035 ACCTCTTCGAATTCGTGAACTTTTT 59.704 36.000 25.93 2.80 40.80 1.94
2197 2259 4.814771 ACCTCTTCGAATTCGTGAACTTTT 59.185 37.500 25.93 4.12 40.80 2.27
2198 2260 4.377897 ACCTCTTCGAATTCGTGAACTTT 58.622 39.130 25.93 5.39 40.80 2.66
2199 2261 3.991367 ACCTCTTCGAATTCGTGAACTT 58.009 40.909 25.93 6.80 40.80 2.66
2200 2262 3.662247 ACCTCTTCGAATTCGTGAACT 57.338 42.857 25.93 10.85 40.80 3.01
2201 2263 3.739300 TGAACCTCTTCGAATTCGTGAAC 59.261 43.478 25.93 15.48 40.80 3.18
2202 2264 3.739300 GTGAACCTCTTCGAATTCGTGAA 59.261 43.478 25.93 13.85 40.80 3.18
2203 2265 3.314553 GTGAACCTCTTCGAATTCGTGA 58.685 45.455 25.93 21.93 40.80 4.35
2204 2266 2.090658 CGTGAACCTCTTCGAATTCGTG 59.909 50.000 25.93 19.33 40.80 4.35
2205 2267 2.325761 CGTGAACCTCTTCGAATTCGT 58.674 47.619 25.93 6.16 40.80 3.85
2206 2268 1.654105 CCGTGAACCTCTTCGAATTCG 59.346 52.381 21.78 21.78 41.45 3.34
2207 2269 2.000447 CCCGTGAACCTCTTCGAATTC 59.000 52.381 0.00 0.00 0.00 2.17
2208 2270 1.621814 TCCCGTGAACCTCTTCGAATT 59.378 47.619 0.00 0.00 0.00 2.17
2209 2271 1.263356 TCCCGTGAACCTCTTCGAAT 58.737 50.000 0.00 0.00 0.00 3.34
2210 2272 1.042229 TTCCCGTGAACCTCTTCGAA 58.958 50.000 0.00 0.00 0.00 3.71
2211 2273 1.042229 TTTCCCGTGAACCTCTTCGA 58.958 50.000 0.00 0.00 0.00 3.71
2212 2274 1.873698 TTTTCCCGTGAACCTCTTCG 58.126 50.000 0.00 0.00 0.00 3.79
2229 2291 9.971744 CTTTTTCACAAAATCGATGAACTTTTT 57.028 25.926 0.00 0.00 32.21 1.94
2230 2292 8.603181 CCTTTTTCACAAAATCGATGAACTTTT 58.397 29.630 0.00 0.00 32.21 2.27
2231 2293 7.763985 ACCTTTTTCACAAAATCGATGAACTTT 59.236 29.630 0.00 0.00 32.21 2.66
2232 2294 7.264947 ACCTTTTTCACAAAATCGATGAACTT 58.735 30.769 0.00 0.00 32.21 2.66
2233 2295 6.805713 ACCTTTTTCACAAAATCGATGAACT 58.194 32.000 0.00 0.00 32.21 3.01
2234 2296 7.221838 TGAACCTTTTTCACAAAATCGATGAAC 59.778 33.333 0.00 0.00 32.21 3.18
2235 2297 7.221838 GTGAACCTTTTTCACAAAATCGATGAA 59.778 33.333 11.39 0.00 45.89 2.57
2236 2298 6.695278 GTGAACCTTTTTCACAAAATCGATGA 59.305 34.615 11.39 0.00 45.89 2.92
2237 2299 6.866347 GTGAACCTTTTTCACAAAATCGATG 58.134 36.000 11.39 0.00 45.89 3.84
2247 2309 8.696410 TTAAAAGATGTGTGAACCTTTTTCAC 57.304 30.769 9.70 9.70 46.57 3.18
2248 2310 9.712305 TTTTAAAAGATGTGTGAACCTTTTTCA 57.288 25.926 0.00 0.00 38.99 2.69
2251 2313 9.936759 TCTTTTTAAAAGATGTGTGAACCTTTT 57.063 25.926 15.24 0.00 40.57 2.27
2252 2314 9.586435 CTCTTTTTAAAAGATGTGTGAACCTTT 57.414 29.630 18.81 0.00 0.00 3.11
2253 2315 8.197439 CCTCTTTTTAAAAGATGTGTGAACCTT 58.803 33.333 18.81 0.00 0.00 3.50
2254 2316 7.559897 TCCTCTTTTTAAAAGATGTGTGAACCT 59.440 33.333 18.81 0.00 0.00 3.50
2255 2317 7.712797 TCCTCTTTTTAAAAGATGTGTGAACC 58.287 34.615 18.81 0.00 0.00 3.62
2256 2318 9.020813 GTTCCTCTTTTTAAAAGATGTGTGAAC 57.979 33.333 18.81 18.81 0.00 3.18
2257 2319 8.744652 TGTTCCTCTTTTTAAAAGATGTGTGAA 58.255 29.630 18.81 13.41 0.00 3.18
2258 2320 8.287439 TGTTCCTCTTTTTAAAAGATGTGTGA 57.713 30.769 18.81 9.20 0.00 3.58
2259 2321 8.925161 TTGTTCCTCTTTTTAAAAGATGTGTG 57.075 30.769 18.81 8.26 0.00 3.82
2260 2322 8.966868 TCTTGTTCCTCTTTTTAAAAGATGTGT 58.033 29.630 18.81 0.00 0.00 3.72
2261 2323 9.801873 TTCTTGTTCCTCTTTTTAAAAGATGTG 57.198 29.630 18.81 11.47 0.00 3.21
2289 2351 9.126151 CCTTTCTTCTACCTTTCTTCTTCTTTT 57.874 33.333 0.00 0.00 0.00 2.27
2290 2352 8.495260 TCCTTTCTTCTACCTTTCTTCTTCTTT 58.505 33.333 0.00 0.00 0.00 2.52
2291 2353 8.035448 TCCTTTCTTCTACCTTTCTTCTTCTT 57.965 34.615 0.00 0.00 0.00 2.52
2292 2354 7.619512 TCCTTTCTTCTACCTTTCTTCTTCT 57.380 36.000 0.00 0.00 0.00 2.85
2293 2355 8.678593 TTTCCTTTCTTCTACCTTTCTTCTTC 57.321 34.615 0.00 0.00 0.00 2.87
2294 2356 8.495260 TCTTTCCTTTCTTCTACCTTTCTTCTT 58.505 33.333 0.00 0.00 0.00 2.52
2295 2357 8.035448 TCTTTCCTTTCTTCTACCTTTCTTCT 57.965 34.615 0.00 0.00 0.00 2.85
2296 2358 8.678593 TTCTTTCCTTTCTTCTACCTTTCTTC 57.321 34.615 0.00 0.00 0.00 2.87
2297 2359 9.126151 CTTTCTTTCCTTTCTTCTACCTTTCTT 57.874 33.333 0.00 0.00 0.00 2.52
2298 2360 8.495260 TCTTTCTTTCCTTTCTTCTACCTTTCT 58.505 33.333 0.00 0.00 0.00 2.52
2299 2361 8.678593 TCTTTCTTTCCTTTCTTCTACCTTTC 57.321 34.615 0.00 0.00 0.00 2.62
2300 2362 9.126151 CTTCTTTCTTTCCTTTCTTCTACCTTT 57.874 33.333 0.00 0.00 0.00 3.11
2301 2363 7.229707 GCTTCTTTCTTTCCTTTCTTCTACCTT 59.770 37.037 0.00 0.00 0.00 3.50
2302 2364 6.712998 GCTTCTTTCTTTCCTTTCTTCTACCT 59.287 38.462 0.00 0.00 0.00 3.08
2303 2365 6.486993 TGCTTCTTTCTTTCCTTTCTTCTACC 59.513 38.462 0.00 0.00 0.00 3.18
2304 2366 7.497925 TGCTTCTTTCTTTCCTTTCTTCTAC 57.502 36.000 0.00 0.00 0.00 2.59
2305 2367 8.519799 TTTGCTTCTTTCTTTCCTTTCTTCTA 57.480 30.769 0.00 0.00 0.00 2.10
2306 2368 7.410120 TTTGCTTCTTTCTTTCCTTTCTTCT 57.590 32.000 0.00 0.00 0.00 2.85
2307 2369 6.699204 CCTTTGCTTCTTTCTTTCCTTTCTTC 59.301 38.462 0.00 0.00 0.00 2.87
2308 2370 6.407412 CCCTTTGCTTCTTTCTTTCCTTTCTT 60.407 38.462 0.00 0.00 0.00 2.52
2309 2371 5.069648 CCCTTTGCTTCTTTCTTTCCTTTCT 59.930 40.000 0.00 0.00 0.00 2.52
2310 2372 5.069119 TCCCTTTGCTTCTTTCTTTCCTTTC 59.931 40.000 0.00 0.00 0.00 2.62
2311 2373 4.962362 TCCCTTTGCTTCTTTCTTTCCTTT 59.038 37.500 0.00 0.00 0.00 3.11
2312 2374 4.546674 TCCCTTTGCTTCTTTCTTTCCTT 58.453 39.130 0.00 0.00 0.00 3.36
2313 2375 4.184649 TCCCTTTGCTTCTTTCTTTCCT 57.815 40.909 0.00 0.00 0.00 3.36
2314 2376 4.342378 ACTTCCCTTTGCTTCTTTCTTTCC 59.658 41.667 0.00 0.00 0.00 3.13
2315 2377 5.521906 ACTTCCCTTTGCTTCTTTCTTTC 57.478 39.130 0.00 0.00 0.00 2.62
2316 2378 6.379988 TGTTACTTCCCTTTGCTTCTTTCTTT 59.620 34.615 0.00 0.00 0.00 2.52
2317 2379 5.891551 TGTTACTTCCCTTTGCTTCTTTCTT 59.108 36.000 0.00 0.00 0.00 2.52
2318 2380 5.445964 TGTTACTTCCCTTTGCTTCTTTCT 58.554 37.500 0.00 0.00 0.00 2.52
2319 2381 5.767816 TGTTACTTCCCTTTGCTTCTTTC 57.232 39.130 0.00 0.00 0.00 2.62
2320 2382 6.538945 TTTGTTACTTCCCTTTGCTTCTTT 57.461 33.333 0.00 0.00 0.00 2.52
2321 2383 6.323739 TGATTTGTTACTTCCCTTTGCTTCTT 59.676 34.615 0.00 0.00 0.00 2.52
2322 2384 5.833131 TGATTTGTTACTTCCCTTTGCTTCT 59.167 36.000 0.00 0.00 0.00 2.85
2323 2385 5.920840 GTGATTTGTTACTTCCCTTTGCTTC 59.079 40.000 0.00 0.00 0.00 3.86
2324 2386 5.362430 TGTGATTTGTTACTTCCCTTTGCTT 59.638 36.000 0.00 0.00 0.00 3.91
2325 2387 4.892934 TGTGATTTGTTACTTCCCTTTGCT 59.107 37.500 0.00 0.00 0.00 3.91
2326 2388 5.195001 TGTGATTTGTTACTTCCCTTTGC 57.805 39.130 0.00 0.00 0.00 3.68
2327 2389 6.863126 GTCATGTGATTTGTTACTTCCCTTTG 59.137 38.462 0.00 0.00 0.00 2.77
2328 2390 6.293955 CGTCATGTGATTTGTTACTTCCCTTT 60.294 38.462 0.00 0.00 0.00 3.11
2329 2391 5.181245 CGTCATGTGATTTGTTACTTCCCTT 59.819 40.000 0.00 0.00 0.00 3.95
2330 2392 4.695455 CGTCATGTGATTTGTTACTTCCCT 59.305 41.667 0.00 0.00 0.00 4.20
2331 2393 4.454504 ACGTCATGTGATTTGTTACTTCCC 59.545 41.667 0.00 0.00 0.00 3.97
2332 2394 5.607119 ACGTCATGTGATTTGTTACTTCC 57.393 39.130 0.00 0.00 0.00 3.46
2346 2408 1.968493 ACTAGACAACCCACGTCATGT 59.032 47.619 0.00 0.00 35.77 3.21
2347 2409 2.736721 CAACTAGACAACCCACGTCATG 59.263 50.000 0.00 0.00 35.77 3.07
2348 2410 2.289444 CCAACTAGACAACCCACGTCAT 60.289 50.000 0.00 0.00 35.77 3.06
2349 2411 1.069513 CCAACTAGACAACCCACGTCA 59.930 52.381 0.00 0.00 35.77 4.35
2350 2412 1.069668 ACCAACTAGACAACCCACGTC 59.930 52.381 0.00 0.00 0.00 4.34
2351 2413 1.125633 ACCAACTAGACAACCCACGT 58.874 50.000 0.00 0.00 0.00 4.49
2352 2414 2.249844 AACCAACTAGACAACCCACG 57.750 50.000 0.00 0.00 0.00 4.94
2353 2415 4.007659 CCATAACCAACTAGACAACCCAC 58.992 47.826 0.00 0.00 0.00 4.61
2354 2416 3.653836 ACCATAACCAACTAGACAACCCA 59.346 43.478 0.00 0.00 0.00 4.51
2355 2417 4.296621 ACCATAACCAACTAGACAACCC 57.703 45.455 0.00 0.00 0.00 4.11
2356 2418 4.874396 GCTACCATAACCAACTAGACAACC 59.126 45.833 0.00 0.00 0.00 3.77
2357 2419 5.731591 AGCTACCATAACCAACTAGACAAC 58.268 41.667 0.00 0.00 0.00 3.32
2358 2420 6.127253 GGTAGCTACCATAACCAACTAGACAA 60.127 42.308 33.64 0.00 45.73 3.18
2359 2421 5.361857 GGTAGCTACCATAACCAACTAGACA 59.638 44.000 33.64 0.00 45.73 3.41
2360 2422 5.840715 GGTAGCTACCATAACCAACTAGAC 58.159 45.833 33.64 4.14 45.73 2.59
2374 2436 3.603671 CGCTCGGGGGTAGCTACC 61.604 72.222 31.50 31.50 45.71 3.18
2375 2437 2.517875 TCGCTCGGGGGTAGCTAC 60.518 66.667 15.88 15.88 37.85 3.58
2376 2438 2.203308 CTCGCTCGGGGGTAGCTA 60.203 66.667 0.00 0.00 37.85 3.32
2379 2441 2.907917 CTCCTCGCTCGGGGGTAG 60.908 72.222 8.49 0.00 36.14 3.18
2380 2442 4.517934 CCTCCTCGCTCGGGGGTA 62.518 72.222 8.49 0.00 40.06 3.69
2390 2452 2.758770 TTCAAACCGCGACCTCCTCG 62.759 60.000 8.23 0.00 45.97 4.63
2391 2453 0.391263 ATTCAAACCGCGACCTCCTC 60.391 55.000 8.23 0.00 0.00 3.71
2392 2454 0.391263 GATTCAAACCGCGACCTCCT 60.391 55.000 8.23 0.00 0.00 3.69
2393 2455 0.391263 AGATTCAAACCGCGACCTCC 60.391 55.000 8.23 0.00 0.00 4.30
2394 2456 1.000145 GAGATTCAAACCGCGACCTC 59.000 55.000 8.23 0.00 0.00 3.85
2395 2457 0.320374 TGAGATTCAAACCGCGACCT 59.680 50.000 8.23 0.00 0.00 3.85
2396 2458 0.442699 GTGAGATTCAAACCGCGACC 59.557 55.000 8.23 0.00 0.00 4.79
2397 2459 0.442699 GGTGAGATTCAAACCGCGAC 59.557 55.000 8.23 0.00 0.00 5.19
2398 2460 0.672401 GGGTGAGATTCAAACCGCGA 60.672 55.000 8.23 0.00 34.62 5.87
2399 2461 1.794222 GGGTGAGATTCAAACCGCG 59.206 57.895 0.00 0.00 34.62 6.46
2400 2462 1.794222 CGGGTGAGATTCAAACCGC 59.206 57.895 9.50 0.00 40.52 5.68
2401 2463 0.953471 TGCGGGTGAGATTCAAACCG 60.953 55.000 15.10 15.10 45.86 4.44
2402 2464 0.521735 GTGCGGGTGAGATTCAAACC 59.478 55.000 0.31 0.31 0.00 3.27
2403 2465 1.197721 CTGTGCGGGTGAGATTCAAAC 59.802 52.381 0.00 0.00 0.00 2.93
2404 2466 1.071542 TCTGTGCGGGTGAGATTCAAA 59.928 47.619 0.00 0.00 0.00 2.69
2405 2467 0.684535 TCTGTGCGGGTGAGATTCAA 59.315 50.000 0.00 0.00 0.00 2.69
2406 2468 0.247460 CTCTGTGCGGGTGAGATTCA 59.753 55.000 0.00 0.00 0.00 2.57
2407 2469 1.086634 GCTCTGTGCGGGTGAGATTC 61.087 60.000 0.00 0.00 0.00 2.52
2408 2470 1.078848 GCTCTGTGCGGGTGAGATT 60.079 57.895 0.00 0.00 0.00 2.40
2409 2471 2.581354 GCTCTGTGCGGGTGAGAT 59.419 61.111 0.00 0.00 0.00 2.75
2418 2480 4.661461 GGGCAAAAAGCTCTGTGC 57.339 55.556 0.00 0.00 41.91 4.57
2424 2486 4.163268 TCCTGTTTTAAAGGGCAAAAAGCT 59.837 37.500 0.00 0.00 44.79 3.74
2425 2487 4.447290 TCCTGTTTTAAAGGGCAAAAAGC 58.553 39.130 0.00 0.00 44.65 3.51
2426 2488 6.993786 TTTCCTGTTTTAAAGGGCAAAAAG 57.006 33.333 0.00 0.00 35.35 2.27
2427 2489 7.201652 CGATTTTCCTGTTTTAAAGGGCAAAAA 60.202 33.333 6.11 4.96 35.35 1.94
2428 2490 6.258947 CGATTTTCCTGTTTTAAAGGGCAAAA 59.741 34.615 6.11 9.20 35.35 2.44
2429 2491 5.755861 CGATTTTCCTGTTTTAAAGGGCAAA 59.244 36.000 0.00 5.05 35.35 3.68
2430 2492 5.293560 CGATTTTCCTGTTTTAAAGGGCAA 58.706 37.500 0.00 0.00 35.35 4.52
2431 2493 4.262249 CCGATTTTCCTGTTTTAAAGGGCA 60.262 41.667 0.00 0.00 35.35 5.36
2432 2494 4.021807 TCCGATTTTCCTGTTTTAAAGGGC 60.022 41.667 0.00 0.00 35.35 5.19
2433 2495 5.715434 TCCGATTTTCCTGTTTTAAAGGG 57.285 39.130 0.00 0.00 35.35 3.95
2434 2496 9.869757 ATTTATCCGATTTTCCTGTTTTAAAGG 57.130 29.630 0.00 0.00 36.02 3.11
2436 2498 9.646427 CCATTTATCCGATTTTCCTGTTTTAAA 57.354 29.630 0.00 0.00 0.00 1.52
2437 2499 8.254508 CCCATTTATCCGATTTTCCTGTTTTAA 58.745 33.333 0.00 0.00 0.00 1.52
2438 2500 7.631811 GCCCATTTATCCGATTTTCCTGTTTTA 60.632 37.037 0.00 0.00 0.00 1.52
2439 2501 6.639563 CCCATTTATCCGATTTTCCTGTTTT 58.360 36.000 0.00 0.00 0.00 2.43
2440 2502 5.395214 GCCCATTTATCCGATTTTCCTGTTT 60.395 40.000 0.00 0.00 0.00 2.83
2441 2503 4.099419 GCCCATTTATCCGATTTTCCTGTT 59.901 41.667 0.00 0.00 0.00 3.16
2442 2504 3.636764 GCCCATTTATCCGATTTTCCTGT 59.363 43.478 0.00 0.00 0.00 4.00
2443 2505 3.005791 GGCCCATTTATCCGATTTTCCTG 59.994 47.826 0.00 0.00 0.00 3.86
2444 2506 3.230976 GGCCCATTTATCCGATTTTCCT 58.769 45.455 0.00 0.00 0.00 3.36
2445 2507 2.030274 CGGCCCATTTATCCGATTTTCC 60.030 50.000 0.00 0.00 45.53 3.13
2446 2508 2.030274 CCGGCCCATTTATCCGATTTTC 60.030 50.000 0.00 0.00 45.53 2.29
2447 2509 1.960689 CCGGCCCATTTATCCGATTTT 59.039 47.619 0.00 0.00 45.53 1.82
2448 2510 1.616159 CCGGCCCATTTATCCGATTT 58.384 50.000 0.00 0.00 45.53 2.17
2449 2511 0.893727 GCCGGCCCATTTATCCGATT 60.894 55.000 18.11 0.00 45.53 3.34
2450 2512 1.303317 GCCGGCCCATTTATCCGAT 60.303 57.895 18.11 0.00 45.53 4.18
2451 2513 2.112297 GCCGGCCCATTTATCCGA 59.888 61.111 18.11 0.00 45.53 4.55
2452 2514 2.983592 GGCCGGCCCATTTATCCG 60.984 66.667 36.64 0.00 42.58 4.18
2467 2529 3.920093 CTCCCCTTCCACGTTGGGC 62.920 68.421 7.06 0.00 38.32 5.36
2468 2530 2.351276 CTCCCCTTCCACGTTGGG 59.649 66.667 5.88 5.88 38.32 4.12
2469 2531 2.351276 CCTCCCCTTCCACGTTGG 59.649 66.667 0.00 0.00 39.43 3.77
2470 2532 1.302511 CACCTCCCCTTCCACGTTG 60.303 63.158 0.00 0.00 0.00 4.10
2471 2533 1.768888 ACACCTCCCCTTCCACGTT 60.769 57.895 0.00 0.00 0.00 3.99
2472 2534 2.122547 ACACCTCCCCTTCCACGT 60.123 61.111 0.00 0.00 0.00 4.49
2473 2535 2.347490 CACACCTCCCCTTCCACG 59.653 66.667 0.00 0.00 0.00 4.94
2474 2536 1.073199 CACACACCTCCCCTTCCAC 59.927 63.158 0.00 0.00 0.00 4.02
2475 2537 2.829384 GCACACACCTCCCCTTCCA 61.829 63.158 0.00 0.00 0.00 3.53
2476 2538 2.034221 GCACACACCTCCCCTTCC 59.966 66.667 0.00 0.00 0.00 3.46
2477 2539 2.034221 GGCACACACCTCCCCTTC 59.966 66.667 0.00 0.00 0.00 3.46
2478 2540 3.580319 GGGCACACACCTCCCCTT 61.580 66.667 0.00 0.00 34.59 3.95
2481 2543 3.785122 AAACGGGCACACACCTCCC 62.785 63.158 0.00 0.00 36.68 4.30
2482 2544 2.203294 AAACGGGCACACACCTCC 60.203 61.111 0.00 0.00 0.00 4.30
2483 2545 1.822186 ACAAACGGGCACACACCTC 60.822 57.895 0.00 0.00 0.00 3.85
2484 2546 2.118404 CACAAACGGGCACACACCT 61.118 57.895 0.00 0.00 0.00 4.00
2485 2547 2.411290 CACAAACGGGCACACACC 59.589 61.111 0.00 0.00 0.00 4.16
2486 2548 1.658686 TTCCACAAACGGGCACACAC 61.659 55.000 0.00 0.00 0.00 3.82
2487 2549 0.965866 TTTCCACAAACGGGCACACA 60.966 50.000 0.00 0.00 0.00 3.72
2488 2550 0.173708 TTTTCCACAAACGGGCACAC 59.826 50.000 0.00 0.00 0.00 3.82
2489 2551 0.173708 GTTTTCCACAAACGGGCACA 59.826 50.000 0.00 0.00 0.00 4.57
2490 2552 0.868177 CGTTTTCCACAAACGGGCAC 60.868 55.000 11.18 0.00 46.39 5.01
2491 2553 1.433879 CGTTTTCCACAAACGGGCA 59.566 52.632 11.18 0.00 46.39 5.36
2492 2554 4.312383 CGTTTTCCACAAACGGGC 57.688 55.556 11.18 0.00 46.39 6.13
2496 2558 4.498513 CCCCTTACTTCGTTTTCCACAAAC 60.499 45.833 0.00 0.00 0.00 2.93
2497 2559 3.633065 CCCCTTACTTCGTTTTCCACAAA 59.367 43.478 0.00 0.00 0.00 2.83
2498 2560 3.215975 CCCCTTACTTCGTTTTCCACAA 58.784 45.455 0.00 0.00 0.00 3.33
2499 2561 2.853705 CCCCTTACTTCGTTTTCCACA 58.146 47.619 0.00 0.00 0.00 4.17
2500 2562 1.538512 GCCCCTTACTTCGTTTTCCAC 59.461 52.381 0.00 0.00 0.00 4.02
2501 2563 1.878948 CGCCCCTTACTTCGTTTTCCA 60.879 52.381 0.00 0.00 0.00 3.53
2502 2564 0.800631 CGCCCCTTACTTCGTTTTCC 59.199 55.000 0.00 0.00 0.00 3.13
2503 2565 0.167470 GCGCCCCTTACTTCGTTTTC 59.833 55.000 0.00 0.00 0.00 2.29
2504 2566 0.535553 TGCGCCCCTTACTTCGTTTT 60.536 50.000 4.18 0.00 0.00 2.43
2505 2567 0.953960 CTGCGCCCCTTACTTCGTTT 60.954 55.000 4.18 0.00 0.00 3.60
2506 2568 1.375523 CTGCGCCCCTTACTTCGTT 60.376 57.895 4.18 0.00 0.00 3.85
2507 2569 1.823169 TTCTGCGCCCCTTACTTCGT 61.823 55.000 4.18 0.00 0.00 3.85
2508 2570 1.079405 TTCTGCGCCCCTTACTTCG 60.079 57.895 4.18 0.00 0.00 3.79
2509 2571 0.744771 CCTTCTGCGCCCCTTACTTC 60.745 60.000 4.18 0.00 0.00 3.01
2510 2572 1.299976 CCTTCTGCGCCCCTTACTT 59.700 57.895 4.18 0.00 0.00 2.24
2511 2573 2.990479 CCTTCTGCGCCCCTTACT 59.010 61.111 4.18 0.00 0.00 2.24
2512 2574 2.824489 GCCTTCTGCGCCCCTTAC 60.824 66.667 4.18 0.00 0.00 2.34
2521 2583 2.886782 GCTATTCGGCGCCTTCTGC 61.887 63.158 26.68 17.68 0.00 4.26
2522 2584 3.324035 GCTATTCGGCGCCTTCTG 58.676 61.111 26.68 9.07 0.00 3.02
2529 2591 9.841853 CTCAATTAGTGATTTCGCTATTCGGCG 62.842 44.444 0.00 0.00 45.25 6.46
2530 2592 4.992381 ATTAGTGATTTCGCTATTCGGC 57.008 40.909 1.93 0.00 38.57 5.54
2531 2593 6.346919 CCTCAATTAGTGATTTCGCTATTCGG 60.347 42.308 1.93 0.00 38.57 4.30
2532 2594 6.420903 TCCTCAATTAGTGATTTCGCTATTCG 59.579 38.462 1.93 0.00 38.57 3.34
2533 2595 7.439655 ACTCCTCAATTAGTGATTTCGCTATTC 59.560 37.037 1.93 0.00 38.57 1.75
2534 2596 7.275920 ACTCCTCAATTAGTGATTTCGCTATT 58.724 34.615 1.93 0.00 38.57 1.73
2535 2597 6.821388 ACTCCTCAATTAGTGATTTCGCTAT 58.179 36.000 1.93 0.00 38.57 2.97
2536 2598 6.222038 ACTCCTCAATTAGTGATTTCGCTA 57.778 37.500 0.00 0.00 37.87 4.26
2537 2599 5.091261 ACTCCTCAATTAGTGATTTCGCT 57.909 39.130 0.00 0.00 40.27 4.93
2538 2600 6.043411 AGTACTCCTCAATTAGTGATTTCGC 58.957 40.000 0.00 0.00 35.07 4.70
2539 2601 6.415280 CGAGTACTCCTCAATTAGTGATTTCG 59.585 42.308 17.23 0.00 40.48 3.46
2540 2602 7.259161 ACGAGTACTCCTCAATTAGTGATTTC 58.741 38.462 17.23 0.00 40.48 2.17
2541 2603 7.171630 ACGAGTACTCCTCAATTAGTGATTT 57.828 36.000 17.23 0.00 40.48 2.17
2542 2604 6.777213 ACGAGTACTCCTCAATTAGTGATT 57.223 37.500 17.23 0.00 40.48 2.57
2543 2605 6.565234 CAACGAGTACTCCTCAATTAGTGAT 58.435 40.000 17.23 0.00 40.48 3.06
2544 2606 5.621555 GCAACGAGTACTCCTCAATTAGTGA 60.622 44.000 17.23 0.00 40.48 3.41
2545 2607 4.563184 GCAACGAGTACTCCTCAATTAGTG 59.437 45.833 17.23 1.71 40.48 2.74
2546 2608 4.219944 TGCAACGAGTACTCCTCAATTAGT 59.780 41.667 17.23 3.77 40.48 2.24
2547 2609 4.744570 TGCAACGAGTACTCCTCAATTAG 58.255 43.478 17.23 3.13 40.48 1.73
2548 2610 4.794278 TGCAACGAGTACTCCTCAATTA 57.206 40.909 17.23 0.00 40.48 1.40
2549 2611 3.678056 TGCAACGAGTACTCCTCAATT 57.322 42.857 17.23 1.76 40.48 2.32
2550 2612 3.678056 TTGCAACGAGTACTCCTCAAT 57.322 42.857 17.23 0.00 40.48 2.57
2551 2613 3.069016 TCTTTGCAACGAGTACTCCTCAA 59.931 43.478 17.23 12.14 40.48 3.02
2552 2614 2.626266 TCTTTGCAACGAGTACTCCTCA 59.374 45.455 17.23 7.05 40.48 3.86
2553 2615 3.299340 TCTTTGCAACGAGTACTCCTC 57.701 47.619 17.23 4.60 36.80 3.71
2554 2616 3.258372 TGATCTTTGCAACGAGTACTCCT 59.742 43.478 17.23 2.73 0.00 3.69
2555 2617 3.368236 GTGATCTTTGCAACGAGTACTCC 59.632 47.826 17.23 3.69 0.00 3.85
2556 2618 4.238514 AGTGATCTTTGCAACGAGTACTC 58.761 43.478 13.18 13.18 0.00 2.59
2557 2619 4.238514 GAGTGATCTTTGCAACGAGTACT 58.761 43.478 18.57 18.57 0.00 2.73
2558 2620 3.368236 GGAGTGATCTTTGCAACGAGTAC 59.632 47.826 11.57 11.75 0.00 2.73
2559 2621 3.585862 GGAGTGATCTTTGCAACGAGTA 58.414 45.455 11.57 0.27 0.00 2.59
2560 2622 2.417719 GGAGTGATCTTTGCAACGAGT 58.582 47.619 11.57 0.34 0.00 4.18
2561 2623 1.734465 GGGAGTGATCTTTGCAACGAG 59.266 52.381 11.57 1.70 0.00 4.18
2562 2624 1.071542 TGGGAGTGATCTTTGCAACGA 59.928 47.619 8.20 8.20 0.00 3.85
2563 2625 1.197721 GTGGGAGTGATCTTTGCAACG 59.802 52.381 0.00 0.00 0.00 4.10
2564 2626 1.541588 GGTGGGAGTGATCTTTGCAAC 59.458 52.381 0.00 0.00 0.00 4.17
2565 2627 1.425066 AGGTGGGAGTGATCTTTGCAA 59.575 47.619 0.00 0.00 0.00 4.08
2566 2628 1.067295 AGGTGGGAGTGATCTTTGCA 58.933 50.000 0.00 0.00 0.00 4.08
2567 2629 2.206576 AAGGTGGGAGTGATCTTTGC 57.793 50.000 0.00 0.00 0.00 3.68
2568 2630 3.084786 GGAAAGGTGGGAGTGATCTTTG 58.915 50.000 0.00 0.00 0.00 2.77
2569 2631 2.716424 TGGAAAGGTGGGAGTGATCTTT 59.284 45.455 0.00 0.00 0.00 2.52
2570 2632 2.307098 CTGGAAAGGTGGGAGTGATCTT 59.693 50.000 0.00 0.00 0.00 2.40
2571 2633 1.912043 CTGGAAAGGTGGGAGTGATCT 59.088 52.381 0.00 0.00 0.00 2.75
2572 2634 1.065126 CCTGGAAAGGTGGGAGTGATC 60.065 57.143 0.00 0.00 0.00 2.92
2573 2635 0.995024 CCTGGAAAGGTGGGAGTGAT 59.005 55.000 0.00 0.00 0.00 3.06
2574 2636 0.401395 ACCTGGAAAGGTGGGAGTGA 60.401 55.000 0.00 0.00 41.33 3.41
2575 2637 0.478507 AACCTGGAAAGGTGGGAGTG 59.521 55.000 0.00 0.00 42.20 3.51
2576 2638 0.478507 CAACCTGGAAAGGTGGGAGT 59.521 55.000 0.00 0.00 42.20 3.85
2577 2639 0.895559 GCAACCTGGAAAGGTGGGAG 60.896 60.000 0.00 0.00 42.20 4.30
2578 2640 1.152830 GCAACCTGGAAAGGTGGGA 59.847 57.895 0.00 0.00 42.20 4.37
2579 2641 2.268076 CGCAACCTGGAAAGGTGGG 61.268 63.158 0.00 0.00 42.20 4.61
2580 2642 1.228124 TCGCAACCTGGAAAGGTGG 60.228 57.895 0.00 0.00 42.20 4.61
2581 2643 0.250295 TCTCGCAACCTGGAAAGGTG 60.250 55.000 0.00 0.00 42.20 4.00
2582 2644 0.472471 TTCTCGCAACCTGGAAAGGT 59.528 50.000 0.00 0.00 45.55 3.50
2583 2645 1.160137 CTTCTCGCAACCTGGAAAGG 58.840 55.000 0.00 0.00 0.00 3.11
2584 2646 1.532868 CACTTCTCGCAACCTGGAAAG 59.467 52.381 0.00 0.00 0.00 2.62
2585 2647 1.593196 CACTTCTCGCAACCTGGAAA 58.407 50.000 0.00 0.00 0.00 3.13
2586 2648 0.250295 CCACTTCTCGCAACCTGGAA 60.250 55.000 0.00 0.00 0.00 3.53
2587 2649 1.371183 CCACTTCTCGCAACCTGGA 59.629 57.895 0.00 0.00 0.00 3.86
2588 2650 2.328099 GCCACTTCTCGCAACCTGG 61.328 63.158 0.00 0.00 0.00 4.45
2589 2651 2.671177 CGCCACTTCTCGCAACCTG 61.671 63.158 0.00 0.00 0.00 4.00
2590 2652 2.357517 CGCCACTTCTCGCAACCT 60.358 61.111 0.00 0.00 0.00 3.50
2598 2660 2.930385 ATATGCAGCGCGCCACTTCT 62.930 55.000 30.33 4.55 41.33 2.85
2599 2661 2.537560 ATATGCAGCGCGCCACTTC 61.538 57.895 30.33 12.93 41.33 3.01
2600 2662 2.514592 ATATGCAGCGCGCCACTT 60.515 55.556 30.33 19.91 41.33 3.16
2601 2663 3.274586 CATATGCAGCGCGCCACT 61.275 61.111 30.33 12.99 41.33 4.00
2602 2664 3.232645 CTCATATGCAGCGCGCCAC 62.233 63.158 30.33 21.15 41.33 5.01
2603 2665 2.968697 CTCATATGCAGCGCGCCA 60.969 61.111 30.33 20.69 41.33 5.69
2604 2666 2.947890 GACTCATATGCAGCGCGCC 61.948 63.158 30.33 14.69 41.33 6.53
2605 2667 2.239812 TGACTCATATGCAGCGCGC 61.240 57.895 26.66 26.66 42.89 6.86
2606 2668 0.873312 AGTGACTCATATGCAGCGCG 60.873 55.000 0.00 0.00 0.00 6.86
2607 2669 1.004185 CAAGTGACTCATATGCAGCGC 60.004 52.381 0.00 0.00 0.00 5.92
2608 2670 2.274437 ACAAGTGACTCATATGCAGCG 58.726 47.619 0.00 0.00 0.00 5.18
2609 2671 2.283617 CGACAAGTGACTCATATGCAGC 59.716 50.000 0.00 0.00 0.00 5.25
2610 2672 2.283617 GCGACAAGTGACTCATATGCAG 59.716 50.000 0.00 0.00 0.00 4.41
2611 2673 2.270923 GCGACAAGTGACTCATATGCA 58.729 47.619 0.00 0.00 0.00 3.96
2612 2674 2.270923 TGCGACAAGTGACTCATATGC 58.729 47.619 0.00 0.00 0.00 3.14
2613 2675 3.242220 GCTTGCGACAAGTGACTCATATG 60.242 47.826 17.05 0.00 0.00 1.78
2614 2676 2.932614 GCTTGCGACAAGTGACTCATAT 59.067 45.455 17.05 0.00 0.00 1.78
2615 2677 2.029020 AGCTTGCGACAAGTGACTCATA 60.029 45.455 17.05 0.00 0.00 2.15
2616 2678 1.151668 GCTTGCGACAAGTGACTCAT 58.848 50.000 17.05 0.00 0.00 2.90
2617 2679 0.104855 AGCTTGCGACAAGTGACTCA 59.895 50.000 17.05 0.00 0.00 3.41
2618 2680 0.510359 CAGCTTGCGACAAGTGACTC 59.490 55.000 17.05 4.56 0.00 3.36
2619 2681 0.882042 CCAGCTTGCGACAAGTGACT 60.882 55.000 17.05 6.83 0.00 3.41
2620 2682 0.880278 TCCAGCTTGCGACAAGTGAC 60.880 55.000 17.05 5.11 0.00 3.67
2621 2683 0.601046 CTCCAGCTTGCGACAAGTGA 60.601 55.000 17.05 11.84 0.00 3.41
2622 2684 0.882042 ACTCCAGCTTGCGACAAGTG 60.882 55.000 17.05 13.88 0.00 3.16
2623 2685 0.179045 AACTCCAGCTTGCGACAAGT 60.179 50.000 17.05 5.59 0.00 3.16
2624 2686 0.947244 AAACTCCAGCTTGCGACAAG 59.053 50.000 13.18 13.18 0.00 3.16
2625 2687 1.333619 GAAAACTCCAGCTTGCGACAA 59.666 47.619 0.00 0.00 0.00 3.18
2626 2688 0.944386 GAAAACTCCAGCTTGCGACA 59.056 50.000 0.00 0.00 0.00 4.35
2627 2689 0.238553 GGAAAACTCCAGCTTGCGAC 59.761 55.000 0.00 0.00 0.00 5.19
2628 2690 0.889186 GGGAAAACTCCAGCTTGCGA 60.889 55.000 0.00 0.00 0.00 5.10
2629 2691 0.890996 AGGGAAAACTCCAGCTTGCG 60.891 55.000 0.00 0.00 0.00 4.85
2630 2692 1.332195 AAGGGAAAACTCCAGCTTGC 58.668 50.000 0.00 0.00 0.00 4.01
2631 2693 4.406648 AAAAAGGGAAAACTCCAGCTTG 57.593 40.909 0.00 0.00 0.00 4.01
2652 2714 9.549509 CGTTTTGAATAAACGGATCTATGAAAA 57.450 29.630 13.31 0.00 46.39 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.