>input_sequence_71578
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------------------------------------------------------------------ATGATCACCACGGC
CGACCATGCCGCTCCCATCGCTGGAGCCATCCTTTCTCTCGTCATCATCATCTTCTTCTCCACCGCCTGCAACTCCGACC
CCGACCTCCTCCTCGACTTCTGCATCGCCGACACGACG---GCGGCCGCCGCGTTCCACTTCAACGGCCTGCCGTGCATC
GACCCGGCGACGGCGCGCGCCGACCACTTCGCCACCTCGGCGCTGTCCCGGCCCACGGACTCGTCCGGCACGCTCTTCGG
CTTCAACGCGACGATGACCAGCCCGGCCGCGTCCCTCCCCGGCGCGAACGCGCAGGGGCTCGCCATGGCGCGCGTCGACC
TCGCGCCAGGTGGCATGGCGCCGCTGCACTCCCACCCGCGCGCGTCGGAGGTGGCGCTCGTGCTCTCCGGCGGCGTGCTG
GTGGGGTTCGCCGACACGTCGTACCGGCTGTACACGCAGCGGCTGCGCGCCGGCGAGGCGTTCGTGTTCCCGAGGGGCAT
GGTGCACTTCATGCGCAACGAGGACACCTCAGCGCCGGCCGTCGTGCTGTCCGGGCTCAACAGCCAGAGCCCCGGCGCGC
AGCTCGTGCCCTTCTCGGCGTTCCTGACGGAGCCGCGGCTGCCCGACGAGGTGGTGAAGAAGACGTTCAGGATCACCGGG
CAGGACGTGCAGAGGATCCAAAGGAGCCTCGGTGGGTCGTAG--------------------------------------
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>chr4D_1_TraesCS4D01G293000
AAATA---ACTACATGTTATGAGAACAT--TCTTGAACCGTGTTGCCTAGTAATGTTTCCACATGTTCCATTGAAATAAC
TACATCAGGTTGTGGGAATATATTTGACCTGTGA-------TGCCTGGTACTGTTTTCACATGTTCCAGCGACTGACCAC
TACCG--TGAACTGCAGGTGACATATTGCCCGGACTGCACGAGGGCATGCCAGTATGACACACAAGCTCTCGTTGGAAGC
CAGGGCCCCATCAAAGGCAGTGATTTTTTCAACACGGTGTTTGGCTGCCTTTTTCTCGACGATTTGACGAATGTGTCACC
ACTGTAATCATCTTGTCAAGAGCTGTTTCCCCCTGAATGT-CAAGAGCTGTTGTAACACCAATGTCCTTGCATCATGATA
TGATGAAGGGTTCTTGTACGTTTATGCATCAACGAACTGCATTTGTGACAGGATAGAAACTCTGATATGATCATGTATTT
ATGTGAATGAAGCTTAAGATGGGATTTGCTTGTGTTACTTGATAAATATTGCTGTTTCTGATACTAATGTTGCGTGCTTA
TGAGATTGAACTATACAACGGTACGGGTTCAAGTAACAAATTA-TACAATGCCATGCCATTGCAAGAGTATTGCAATAGT
TTTCCAGA-GTAATAGGAAGTCGGAAGGAAATGTTAGAATATGTTCGTGTTTAGATGAGTTTTCTGCTCTGTAGGTTTCA
AAAAGATTCCAAGAAGAGATTGAATGTAACCAAAGGGTTAACTGGTGACTTGAAAAGAAAACCCTCCATCATCAAAAGTG
TGTATATCTCATTCTCCAAGGCAAGGCAAGGTAACGTAGCCAATGCAGCTACTCACCCTCACAGTAACTTCGAAGCATCG
--TCTGCCAGCTCCACAAAGCCCAAGAGTACATGCTCGAGTGACACCCTGATTGCACATTTTATGTGCACATGAGCCACG
ACTGCTGAATGCTGATCACTGATCCTACGTACTGCAAGAGCAGCGAATTCTTTCTA-------GCCATGATCACCACGGC
CGACCATGCCGCTCCCATCGCTGGAGCCATCCTTTCTCTCGTCATCATCATCTTCTTCTCCACCGCCTGCAACTCCGACC
CCGACCTCCTCCTCGACTTCTGCATCGCCGACACGACG---GCGGCCGCCGCGTTCCACTTCAACGGCCTGCCGTGCATC
GACCCGGCGACGGCGCGCGCCGACCACTTCGCCACCTCGGCGCTGTCCCGGCCCACGGACTCGTCCGGCACGCTCTTCGG
CTTCAACGCGACGATGACCAGCCCGGCCGCGTCCCTCCCCGGCGCGAACGCGCAGGGGCTCGCCATGGCGCGCGTCGACC
TCGCGCCAGGTGGCATGGCGCCGCTGCACTCCCACCCGCGCGCGTCGGAGGTGGCGCTCGTGCTCTCCGGCGGCGTGCTG
GTGGGGTTCGCCGACACGTCGTACCGGCTGTACACGCAGCGGCTGCGCGCCGGCGAGGCGTTCGTGTTCCCGAGGGGCAT
GGTGCACTTCATGCGCAACGAGGACACCTCAGCGCCGGCCGTCGTGCTGTCCGGGCTCAACAGCCAGAGCCCCGGCGCGC
AGCTCGTGCCCTTCTCGGCGTTCCTGACGGAGCCGCGGCTGCCCGACGAGGTGGTGAAGAAGACGTTCAGGATCACCGGG
CAGGACGTGCAGAGGATCCAAAGGAGCCTCGGTGGGTCGTAGGGGG-------------------------------ACT
CGGCTACTCCGTACATAATTACTCGTGTGCTACGACAGGGGTCCAAATATTGTACGCGATCGTCATGACTTATCTGTCAT
TTTTTACTTAATGTGATTATTATACATACTAGCAAAAGGGTCCGTACGTTGTAAAGGGAGAAAAAAAATTCATAATCTTT
GATGGTCATGACCACATTTTGCTGCATCACCGAGATACACTATCCTATCAATTTCGTGAAATCATGAACATGTGTTTATA
CTCGTGCACATGTTTGAAATCGTGAATATTTTCAAATTCA-TGAACACTTTTACAAAATTTCAAACATTTTCTAAAACAA
GGAACATTTTATGAATTCATGAACATTTTATACTATTTGTAAACATTTTTCTTGAATCGGCGAACATTTCTAATAAAAAA
ACCAAGAATTCAAAAAAGTTCATTGATTTTGAGAAAAAGGTTTACGGATTTTATAGAAAAAGTTCATGAATACGGAAAAA
GTTCACCAATTTTGAAAAAAAAGTTCACGAATTCGAAGAGGTTCACGGGAAAAAAGTTCATCGATTTTGTGAAAAAGGTT
CACACATCTTTTAAAAAGAGGAACAAGAAAAAAAGAAGAAGAAAGGTAGAAGAAAGGAAAGAAAGAAGCAAAGGGAAGTA
ACAAATCACATGACGTGGGTTGTCTAGTTGGTTATGGTAGCTACCCCCGAGCGAGGAGGTCGCGGTTTGAATCTCACCCG
CACAGAGCTTTTTGCCCTTTAAAACAGGAAAATCGGATAAATGGGCCGGCCCAACGTGGAAGGGGAGGTGTGTGCCCGTT
TGTGGAAAACGAAGTAAGGGGCGCAGAAGGCGCCGAATAGCGAAATCACTAATTGAGGAGTACTCGTTGCAAAGATCACT
CCCACCTTTCCAGGTTGCGAGAAGTGGCGCGCTGCATATGAGTCACTTGTCGCAAGCTGGAGTTTTCCCTTTTTTTTCAT
AGATCCGTTTATTCAAAACGTTTTATCTCTTAAA
>chr4B_1
AAATAACTACTTCATGTTATGAGAACAT--T-TTGAACCGTGTTGCCTAGTAATGTTTCCACATGTTCCATCGAAATAAC
TACATCAGGTTGTGGGAGTATATTTGAACTGGGA-------TGCCTGGTACTATTTTCACATGTTCCAGCGACTCACCAC
TTCACCATGAACTGCAGGTGACATATTGCCCGGACTGCACGAGGGCGTGCCAATATGACACACAAGCTCTCGTTGGAAGC
CAAGGCCCCATCAGAGGCAGTGATTTTTTCAACACGGTGTTTGGCTGCCTCTTTCTCGATGATTTGACGAATGTGTCACC
ACTGTAATCATCTTGTCAAGAGCCGTTTCTCCCTCGAATACCAAGAGCTGTTGTAACACCAATGTCCTTGCATCATGATA
TGATCAAGGGTTCTTGTACGCTTATGCATCAACGAACTGCATTTGTGTCAG------------GATATGATCATGTATTC
ATGTGAATGAAGCTTAAGAT-GGATTTGCTTGTGTTACTTGATAAATATTGCTGCTTCTGATACTAATGTTGCATGCATA
TGAGATTGAACTATA-------------TCAAGTAGCAAATTATTACAATGCCATGCCATTGCAAGAGTATTGCAATAGT
TTACCAGA-GTAATAGGAAGTCTCAAGGATGTGTTAGAATATGTTTGTGTTTCGATGAGTTTTATGTTCTGTGGGTTTCA
AAAAGATTCCAAGAAGAGATTGAATGTTACCAAAGGGTTAACTGGTGACTTGAAAAGAAAACCCTCCATCATCAAAAGTG
TGCATGTCTCATTCTCCAAGGCAAGGCAAGGTAACGTAGCCAATGCAGCTACTCACCCTCACAGTAACTTTGAAGCATCT
CATCTGCCAGCTCCACAAAGCCCAAGAATACATGCTCGAGTGACACACTGATTGCACATTATATGTGCACATGAGCCATG
GC-------TGCTGATCACTGATCCTACGTACTGCAAGACTAGCGAATTCTAACCATGA---------------------
--------------TCACCGCTGGAGCCATCCTTTCTCTCGTGATGATCATCTTCTTCTCCACCGTCTGCAACTCCGACC
CGGACCTCCTCTTCGACTACTGCGTCGCCGACACGACGTCTGCCGCCGCGTCGTTCCACTTCAACGGCCTGCCGTGCATC
GACCCGGCGACGGCGTGCGCCGACCACTTCGCGACCTCGGCGCTCTCCGAGCCCACGGACCCGTCCGCCACGCTCTTCGG
CTTCAACGCGACGATGACCAGCCCGGCCGCGTCCCTCCCGGGCGCGAACGCGCAGGGGCTCGCCATGGCGCGCGTCGACC
TCGCGCCCGGCGGCATGGCGCCGCTGCACTCCCACCCGCGCGCGTCGGAGGTGGCGCTCGTGATCTCCGGCGGCGTGCTG
GTGGGGTTCGCCGACACGTCGTACCGGCTGTACACGCAGCGGCTGCGCGCCGGCGAGGCCTTCGTGTTCCCGAGGGGCAT
GGTGCACTTCATGCGCAACGAGGACGCCTCGTCCCCCGCCGTCGTGCTGTCCGGGCTCAACAGCCAGAACCCCGGCGCGC
AGCTCGTGCCCTTCTCGGCGTTCCTGACGGAGCCGCGGCTGCCCGACGAGGTCGTCAAGAAGACGTTCAGGATCACCGGG
CAGGGCGTGCAGAGGATCCAAAGGAGCCTCGGTGGGTCGTAGAGGAAAAAATCGCCTATGCCTGCATCTAGTATACTACT
CGGCTACTCCTTACATAATTACTCATGTGCTACGACAGGAGTCCAAATATTGTACGCGATCGTCATGACTTATCTGTCAT
TTTTTTACTAATGTGATTATTATACATACTATCAAAAGGGATCGTGCGTTCCAACCGAAGATTTTTTTTCATATTCTCCA
A--GGTTATGACCACATTTTGCTACATCACCGAGATACACTATTAC-TCAATTTCGTGAAATAAACACTTT---TTGAAA
CTCATGCACATATTTGAAATCGTGAACATTTTTCATATTTTTGATCACTTTTACAAATTTTCAAGCATTTTCTAAAATCA
AGAACATGTTTTCAATTCATGAAAATTTTATACTA---------------------------------------------
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>chr4A_10
------------CATGTTATGAGGAACATAT-TTGAACCGTGCTGCCTAGTAATGTTTCCACATGTTCCATCGAAATAAC
TGCATCAGGTTGTGGGAATATATTTGACTGTGATGCCTTATTGCTTGGTACTGTTCTCACATGTTCTAGCGACTCACCAC
TTGACCATGAAATGCAGGTGACGTATTGCCCGGACTGCACGAGGGCGTGCCAATATGACACGCAAGCCCTCGTAGGAAGC
CAGGGCCCCATCAAAGGCAGTGATTTTTTCAACACGGTGTTTGGCTGCCTCTTTCTCGATGATTTGACGAATGTGTCACC
ACTGTAATCATCTTGTCAAGAGCTGTTTTTTCTCAAC-GT-CAAGAGCTGTTGTAACACCATTGTCCTTGCATCATGATA
TGCACAAGGGCTGTTGTACGTTTATGCATCAACGAACTGCATCCGTGACAGGGTAGACACCCATGAACTCTGCTAGTTC-
---------AAGCTTAAGATGGAGTTTGCTTGCGTGGCTTGATAAAAATTGCTGCTTCCGATAATAATGTTACAT-CTTA
TGAGTTTGAACTATA-----------------------------------------------------------------
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>chr4A_605
TGCAAG--------------------------------------------------------------------------
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-------------------------------------------------------------------GTATCGCAATAGT
TTTCCTGCGGTTATAGGAAGTTTGAAGTAAATGTTTGAATATGATTGTGATTGGGTGAATTTTCTGTTCTGTAGGTTTGA
AAAGGATTCCAAGAAGAGCGTGAACGTAACCAAAGTTATAACTGGTGACTTGGAAAGAAAACCCTCCGTCGTCAAAAGTA
TGTATCTCGTTCCTG--AAGGCATGGTAACGTAACGTAGCCAATGCAGCTACTCACACCCGCAGTAACTTCAAAGCATCA
--GTTGCCAACTCAACTCAACTGATCAATGCAGCCAAAAACTACCGC------------TATATGTCCACATGAGCCATG
GC-------CGCAGAATGCTGATCACTGGTCGATCCTGCGGACAGAAGACTGTCAAACTGGAGGCCATGAGCGCCACAAC
CAACCATGCCACTCTCATCGCTCGAGCCATCGTTTCTCTCGCCATGATCTTCTTCTTCTCCGCCGTCTGCAACTCCGACC
CGGACCTCCTCTTCGACCACTGCGTCGCCGACACGGCC---GCCGCCGCGGCGTTCCACTTCAACGGCCTGCCGTGCATC
GACCCGGCGACGGCGCGCGCCGACCACTTCGCCACCTCGGCGCTCTCCGAGCCCACGGACCCGTCCGCCACGCTCTTCGG
CTTCAACGCGACGGTGACCAGCCCGGCCGCGTCCCTCCCCGGCGCGAACGCGCAGGGGCTCGCCATGGCGCGCATCGACC
TGGCCCCCGGCGGCATGGCGCCGCTGCACTCCCACCCGCGCGCGTCGGAGGTGGCGCTCGTGCTCTCCGGCGGCGTGCTG
GTGGGGTTCGCCGACACGTCGTACCGGCTCTACACGCAGCGGCTGCGCGCCGGCGAGGCGTTCGTGTTCCCGAGGGGCAT
GGTGCACTTCATGCGCAACGAGGACGTCTCCGCCCCCGCCGTCGTGCTGTCCGGGCTCAACAGCCAGAGCCCCGGCGCGC
AGCTCGTGCCCTTGTCGGCGTTCCGGACGGAGCCGCGCCTGCCGGACGAGGTCGTCAAGAAGACGTTCAGGATCACCGGG
CAGGACGTGCAGAGGATACAAAGGAGCCTCGGTGGGTCGTAGGGGG----------------------------------
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>SNPs
-----------S-------------------S---------------------------------------S--------
-------------------------------S------------------------------------------S-----
-S-SS-----------------------------------------S-----S---------------------------
--------------------------------------------------S--------S--------------------
-----------------------------S----S--S------------------------------------------
----S-----------------------------------------------S----S--S-S----------------S
------------------------------------------------------S------------------S------
---------------SSSSSSSSSSSSS-------S--------------------------------------------
----------------------S----------------------S------S-------------S-------------
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-----S-------------------------------------------------------------------------S
---------------------------S--------------------------------S-----------------S-
S-SSSSSSS-------------------------------S----------S--S---------------S-S----SS-
-S--------S---S------------------------------S-------------------S--------------
-S---------S------S----S-------------------S-----S------------------------------
--------------------------------------------S---SS----------S------S------------
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-------S--S---------------------------------------------------------------------
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-------------------------S----S--S--S-------------------------------------------
----------------------------------------------------S--S------------------------
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----------S-------------S--------------S----------------------------------------
-----SSS-----------------------S--------SS---S----SS--SS-S---SSSSSSS-SSSSSSSSSSS
SSS---S----------------S-------------------SSSS---------------S-SS-SSS-SSS--S-S-
---S-------S--------------S-----SS-SS-SS----S------------S------S------------SS-
S------S--S-S----------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_961
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-------------------------------------------------------------TATGTGCACATGAGCCACG
A-------------------------------------------------------------------------------
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>reverse_2679
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--------------------------------------TGAGTCACTTGTCGCAAGCT----------------------
----------------------------------
