Multiple sequence alignment - TraesCS4D01G289600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G289600 chr4D 100.000 3665 0 0 1 3665 460715181 460711517 0.000000e+00 6769.0
1 TraesCS4D01G289600 chr4D 88.000 75 9 0 2441 2515 15426246 15426320 5.040000e-14 89.8
2 TraesCS4D01G289600 chr4B 91.406 3072 149 48 29 3041 575525016 575528031 0.000000e+00 4104.0
3 TraesCS4D01G289600 chr4B 86.461 421 37 11 842 1260 152083023 152082621 9.340000e-121 444.0
4 TraesCS4D01G289600 chr4B 85.036 421 43 10 842 1260 314785138 314784736 9.470000e-111 411.0
5 TraesCS4D01G289600 chr4B 95.181 83 3 1 3531 3612 575605196 575605278 2.970000e-26 130.0
6 TraesCS4D01G289600 chr4B 87.654 81 10 0 2441 2521 25929520 25929600 1.080000e-15 95.3
7 TraesCS4D01G289600 chr4A 87.973 1904 115 51 1 1870 7588914 7590737 0.000000e+00 2143.0
8 TraesCS4D01G289600 chr4A 89.125 1223 75 22 1848 3041 7590911 7592104 0.000000e+00 1469.0
9 TraesCS4D01G289600 chr4A 85.714 84 12 0 2441 2524 585377659 585377576 5.040000e-14 89.8
10 TraesCS4D01G289600 chr7A 93.177 982 53 10 100 1077 21536676 21537647 0.000000e+00 1430.0
11 TraesCS4D01G289600 chr5B 88.333 360 36 6 902 1260 266957784 266958138 9.410000e-116 427.0
12 TraesCS4D01G289600 chr3A 85.591 347 29 10 842 1187 354932260 354932586 9.740000e-91 344.0
13 TraesCS4D01G289600 chr6A 90.038 261 13 5 132 379 162861386 162861126 3.530000e-85 326.0
14 TraesCS4D01G289600 chr7B 90.000 240 20 4 1022 1260 355695258 355695022 1.280000e-79 307.0
15 TraesCS4D01G289600 chr3B 89.583 240 21 4 1022 1260 473398471 473398707 5.950000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G289600 chr4D 460711517 460715181 3664 True 6769 6769 100.000 1 3665 1 chr4D.!!$R1 3664
1 TraesCS4D01G289600 chr4B 575525016 575528031 3015 False 4104 4104 91.406 29 3041 1 chr4B.!!$F2 3012
2 TraesCS4D01G289600 chr4A 7588914 7592104 3190 False 1806 2143 88.549 1 3041 2 chr4A.!!$F1 3040
3 TraesCS4D01G289600 chr7A 21536676 21537647 971 False 1430 1430 93.177 100 1077 1 chr7A.!!$F1 977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.455410 CTTGCAGAGGAGAGGAGACG 59.545 60.0 0.00 0.0 0.0 4.18 F
327 354 0.734889 CAGATTCGTGGGTGCATTCC 59.265 55.0 0.00 0.0 0.0 3.01 F
1757 1825 1.965935 ATGGCGCACATGCTATTGTA 58.034 45.0 10.83 0.0 38.7 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 1836 0.920763 TGAGGGAACAGGGATGGCAT 60.921 55.0 0.00 0.0 0.00 4.40 R
1771 1839 1.879575 TAGTGAGGGAACAGGGATGG 58.120 55.0 0.00 0.0 0.00 3.51 R
3380 3695 0.029567 GGCGATGTCGAGTACTCCAG 59.970 60.0 17.23 4.4 43.02 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.476488 GACTTGCAGAGGAGAGGAGAC 59.524 57.143 0.00 0.00 0.00 3.36
32 33 0.455410 CTTGCAGAGGAGAGGAGACG 59.545 60.000 0.00 0.00 0.00 4.18
33 34 0.967887 TTGCAGAGGAGAGGAGACGG 60.968 60.000 0.00 0.00 0.00 4.79
177 186 2.685380 CTGCTTCTCCTCCGGGGT 60.685 66.667 0.00 0.00 36.25 4.95
225 252 2.360350 CCTGCCATTGCTGACCGT 60.360 61.111 0.00 0.00 38.61 4.83
327 354 0.734889 CAGATTCGTGGGTGCATTCC 59.265 55.000 0.00 0.00 0.00 3.01
430 474 7.504926 AGATTTGTGGTAATACTACTTGGGA 57.495 36.000 8.34 0.00 30.28 4.37
456 500 8.860088 AGTAAACTAAAATCTTGTTGCTTGGAT 58.140 29.630 0.00 0.00 0.00 3.41
466 510 3.499338 TGTTGCTTGGATGGTTCAGATT 58.501 40.909 0.00 0.00 0.00 2.40
496 540 6.140737 GTCGACTGTGAATTTGTTGTGATTTC 59.859 38.462 8.70 0.00 0.00 2.17
532 576 7.441890 TCAAAGTAACTGTTGTTGTCTGAAA 57.558 32.000 2.69 0.00 37.59 2.69
935 995 8.443937 GGACAGTATCACTTTATTCTGTTGTTC 58.556 37.037 0.00 0.00 37.54 3.18
1087 1149 2.672961 TGACTGGCTATGTGCTGTAC 57.327 50.000 0.00 0.00 42.39 2.90
1220 1282 2.622942 AGCTAGCGATTCTCCTCAAGAG 59.377 50.000 9.55 0.00 44.75 2.85
1280 1342 2.158957 TGATCAATCTGGTTCGCCCTAC 60.159 50.000 0.00 0.00 36.08 3.18
1308 1373 8.592105 TTGCCAACTATTTCTTTTCTGAATTG 57.408 30.769 0.00 0.00 0.00 2.32
1309 1374 7.725251 TGCCAACTATTTCTTTTCTGAATTGT 58.275 30.769 0.00 0.00 0.00 2.71
1310 1375 8.203485 TGCCAACTATTTCTTTTCTGAATTGTT 58.797 29.630 0.00 0.00 0.00 2.83
1518 1586 3.943381 GTGATGAAGGCAAGATGATGTCA 59.057 43.478 0.00 0.00 0.00 3.58
1595 1663 5.174395 CACTCATCCCTTTGTAAGTCTCTG 58.826 45.833 0.00 0.00 0.00 3.35
1612 1680 4.627467 GTCTCTGTTATGATGCTCAAACGT 59.373 41.667 0.00 0.00 0.00 3.99
1615 1683 4.994217 TCTGTTATGATGCTCAAACGTTGA 59.006 37.500 0.00 0.65 38.17 3.18
1757 1825 1.965935 ATGGCGCACATGCTATTGTA 58.034 45.000 10.83 0.00 38.70 2.41
1768 1836 8.495148 CGCACATGCTATTGTAAGTGATATTTA 58.505 33.333 4.98 0.00 39.32 1.40
1803 1871 3.054361 TCCCTCACTAATTTCTGGCCTTC 60.054 47.826 3.32 0.00 0.00 3.46
1899 2169 6.382859 TGCTCAAGGTATAACTGGAATGACTA 59.617 38.462 0.00 0.00 0.00 2.59
1960 2231 8.307483 TCACACCAATTTCACTTAAAGTCAAAA 58.693 29.630 0.00 0.00 0.00 2.44
2011 2282 5.807011 GCGGCAACTTATTTTGATTTCAGAT 59.193 36.000 0.00 0.00 0.00 2.90
2162 2433 1.101635 TACCATCCTCTCGAGTGCCG 61.102 60.000 13.13 0.00 40.25 5.69
2180 2451 2.573340 CTGCCAATTGAACCGGCC 59.427 61.111 7.12 0.00 45.63 6.13
2279 2550 3.350833 AGAGGCTGAAAATAAGCTGGTG 58.649 45.455 0.00 0.00 40.64 4.17
2282 2553 3.760684 AGGCTGAAAATAAGCTGGTGAAG 59.239 43.478 0.00 0.00 40.64 3.02
2288 2559 0.462759 ATAAGCTGGTGAAGAGCCGC 60.463 55.000 0.00 0.00 37.12 6.53
2352 2623 1.761198 GTACTATCGTTGGCCCCTTCT 59.239 52.381 0.00 0.00 0.00 2.85
2353 2624 2.170012 ACTATCGTTGGCCCCTTCTA 57.830 50.000 0.00 0.00 0.00 2.10
2355 2626 1.760613 CTATCGTTGGCCCCTTCTACA 59.239 52.381 0.00 0.00 0.00 2.74
2365 2636 2.760650 GCCCCTTCTACAATCTTTTGGG 59.239 50.000 0.00 0.00 37.15 4.12
2368 2639 4.838423 CCCCTTCTACAATCTTTTGGGTTT 59.162 41.667 0.00 0.00 37.15 3.27
2371 2642 6.929049 CCCTTCTACAATCTTTTGGGTTTTTC 59.071 38.462 0.00 0.00 37.15 2.29
2372 2643 6.929049 CCTTCTACAATCTTTTGGGTTTTTCC 59.071 38.462 0.00 0.00 37.15 3.13
2409 2684 8.988934 TGAATTTAGTTCATACACACTCTCAAC 58.011 33.333 0.00 0.00 41.79 3.18
2410 2685 8.902540 AATTTAGTTCATACACACTCTCAACA 57.097 30.769 0.00 0.00 0.00 3.33
2411 2686 9.507329 AATTTAGTTCATACACACTCTCAACAT 57.493 29.630 0.00 0.00 0.00 2.71
2434 2709 8.911965 ACATAACATAACATAACATTCATGCCA 58.088 29.630 0.00 0.00 0.00 4.92
2563 2841 1.354506 GGCAATGCATCAGCGAGAC 59.645 57.895 7.79 1.49 46.23 3.36
2569 2847 2.898738 CATCAGCGAGACCTGGCT 59.101 61.111 0.54 0.54 45.59 4.75
2812 3112 0.810823 GTCGTTGTGTTTGGGGACGA 60.811 55.000 0.00 0.00 40.03 4.20
2845 3154 2.036733 CCGGTTCTCTTGTTGTGGTAGA 59.963 50.000 0.00 0.00 0.00 2.59
2958 3273 8.910944 TGATATTAGTACTGACTTGGGAGTAAC 58.089 37.037 5.39 0.00 35.88 2.50
2965 3280 8.968969 AGTACTGACTTGGGAGTAACTAATAAG 58.031 37.037 0.00 0.00 35.88 1.73
2998 3313 4.356442 GCATTTTGCGGCCGTGGT 62.356 61.111 28.70 5.90 31.71 4.16
3018 3333 0.593773 CGTGGCGGTGTTTCTTTTGG 60.594 55.000 0.00 0.00 0.00 3.28
3025 3340 1.511850 GTGTTTCTTTTGGGCCATGC 58.488 50.000 7.26 0.00 0.00 4.06
3029 3344 0.968405 TTCTTTTGGGCCATGCTGTC 59.032 50.000 7.26 0.00 0.00 3.51
3034 3349 2.283101 GGGCCATGCTGTCCAACA 60.283 61.111 4.39 0.00 0.00 3.33
3041 3356 2.559668 CCATGCTGTCCAACAACTTGAT 59.440 45.455 0.00 0.00 0.00 2.57
3042 3357 3.571571 CATGCTGTCCAACAACTTGATG 58.428 45.455 0.00 0.00 0.00 3.07
3043 3358 2.929641 TGCTGTCCAACAACTTGATGA 58.070 42.857 0.73 0.00 0.00 2.92
3044 3359 3.286353 TGCTGTCCAACAACTTGATGAA 58.714 40.909 0.73 0.00 0.00 2.57
3045 3360 3.698539 TGCTGTCCAACAACTTGATGAAA 59.301 39.130 0.73 0.00 0.00 2.69
3046 3361 4.341806 TGCTGTCCAACAACTTGATGAAAT 59.658 37.500 0.73 0.00 0.00 2.17
3047 3362 4.682860 GCTGTCCAACAACTTGATGAAATG 59.317 41.667 0.73 0.00 0.00 2.32
3048 3363 5.199024 TGTCCAACAACTTGATGAAATGG 57.801 39.130 0.73 0.00 0.00 3.16
3049 3364 4.648762 TGTCCAACAACTTGATGAAATGGT 59.351 37.500 0.73 0.00 0.00 3.55
3050 3365 5.128499 TGTCCAACAACTTGATGAAATGGTT 59.872 36.000 0.73 0.00 0.00 3.67
3051 3366 6.322456 TGTCCAACAACTTGATGAAATGGTTA 59.678 34.615 0.73 0.00 0.00 2.85
3052 3367 7.015098 TGTCCAACAACTTGATGAAATGGTTAT 59.985 33.333 0.73 0.00 0.00 1.89
3053 3368 7.329226 GTCCAACAACTTGATGAAATGGTTATG 59.671 37.037 0.73 0.00 0.00 1.90
3054 3369 7.232330 TCCAACAACTTGATGAAATGGTTATGA 59.768 33.333 0.73 0.00 0.00 2.15
3055 3370 7.543172 CCAACAACTTGATGAAATGGTTATGAG 59.457 37.037 0.73 0.00 0.00 2.90
3056 3371 8.298854 CAACAACTTGATGAAATGGTTATGAGA 58.701 33.333 0.00 0.00 0.00 3.27
3057 3372 8.585471 ACAACTTGATGAAATGGTTATGAGAT 57.415 30.769 0.00 0.00 0.00 2.75
3058 3373 8.464404 ACAACTTGATGAAATGGTTATGAGATG 58.536 33.333 0.00 0.00 0.00 2.90
3059 3374 8.680001 CAACTTGATGAAATGGTTATGAGATGA 58.320 33.333 0.00 0.00 0.00 2.92
3060 3375 8.447924 ACTTGATGAAATGGTTATGAGATGAG 57.552 34.615 0.00 0.00 0.00 2.90
3061 3376 8.270030 ACTTGATGAAATGGTTATGAGATGAGA 58.730 33.333 0.00 0.00 0.00 3.27
3062 3377 8.442632 TTGATGAAATGGTTATGAGATGAGAC 57.557 34.615 0.00 0.00 0.00 3.36
3063 3378 7.567458 TGATGAAATGGTTATGAGATGAGACA 58.433 34.615 0.00 0.00 0.00 3.41
3064 3379 7.496920 TGATGAAATGGTTATGAGATGAGACAC 59.503 37.037 0.00 0.00 0.00 3.67
3065 3380 6.710278 TGAAATGGTTATGAGATGAGACACA 58.290 36.000 0.00 0.00 0.00 3.72
3066 3381 6.595326 TGAAATGGTTATGAGATGAGACACAC 59.405 38.462 0.00 0.00 0.00 3.82
3067 3382 5.682234 ATGGTTATGAGATGAGACACACA 57.318 39.130 0.00 0.00 0.00 3.72
3068 3383 5.682234 TGGTTATGAGATGAGACACACAT 57.318 39.130 0.00 0.00 0.00 3.21
3069 3384 5.664457 TGGTTATGAGATGAGACACACATC 58.336 41.667 0.00 0.00 42.81 3.06
3078 3393 5.904941 GATGAGACACACATCTTCAGATCT 58.095 41.667 0.00 0.00 40.36 2.75
3079 3394 5.069501 TGAGACACACATCTTCAGATCTG 57.930 43.478 17.07 17.07 31.21 2.90
3080 3395 4.525874 TGAGACACACATCTTCAGATCTGT 59.474 41.667 21.92 0.00 34.67 3.41
3084 3399 4.613925 ACACATCTTCAGATCTGTGTGT 57.386 40.909 29.91 29.91 42.97 3.72
3085 3400 4.564041 ACACATCTTCAGATCTGTGTGTC 58.436 43.478 29.91 0.00 42.97 3.67
3086 3401 4.282957 ACACATCTTCAGATCTGTGTGTCT 59.717 41.667 29.91 17.22 42.97 3.41
3087 3402 4.626172 CACATCTTCAGATCTGTGTGTCTG 59.374 45.833 25.24 17.40 42.46 3.51
3088 3403 4.282957 ACATCTTCAGATCTGTGTGTCTGT 59.717 41.667 21.92 15.03 41.92 3.41
3089 3404 4.511617 TCTTCAGATCTGTGTGTCTGTC 57.488 45.455 21.92 0.00 41.92 3.51
3090 3405 3.256879 TCTTCAGATCTGTGTGTCTGTCC 59.743 47.826 21.92 0.00 41.92 4.02
3091 3406 2.881734 TCAGATCTGTGTGTCTGTCCT 58.118 47.619 21.92 0.00 41.92 3.85
3092 3407 2.560105 TCAGATCTGTGTGTCTGTCCTG 59.440 50.000 21.92 0.00 41.92 3.86
3093 3408 2.560105 CAGATCTGTGTGTCTGTCCTGA 59.440 50.000 14.95 0.00 37.62 3.86
3094 3409 2.560542 AGATCTGTGTGTCTGTCCTGAC 59.439 50.000 0.00 0.00 37.47 3.51
3095 3410 2.073252 TCTGTGTGTCTGTCCTGACT 57.927 50.000 6.00 0.00 37.79 3.41
3096 3411 2.388735 TCTGTGTGTCTGTCCTGACTT 58.611 47.619 6.00 0.00 37.79 3.01
3097 3412 3.562182 TCTGTGTGTCTGTCCTGACTTA 58.438 45.455 6.00 0.00 37.79 2.24
3098 3413 4.152647 TCTGTGTGTCTGTCCTGACTTAT 58.847 43.478 6.00 0.00 37.79 1.73
3099 3414 4.588951 TCTGTGTGTCTGTCCTGACTTATT 59.411 41.667 6.00 0.00 37.79 1.40
3100 3415 5.070446 TCTGTGTGTCTGTCCTGACTTATTT 59.930 40.000 6.00 0.00 37.79 1.40
3101 3416 5.056480 TGTGTGTCTGTCCTGACTTATTTG 58.944 41.667 6.00 0.00 37.79 2.32
3102 3417 5.163353 TGTGTGTCTGTCCTGACTTATTTGA 60.163 40.000 6.00 0.00 37.79 2.69
3103 3418 5.406780 GTGTGTCTGTCCTGACTTATTTGAG 59.593 44.000 6.00 0.00 37.79 3.02
3104 3419 4.932200 GTGTCTGTCCTGACTTATTTGAGG 59.068 45.833 6.00 0.00 37.79 3.86
3105 3420 3.935828 GTCTGTCCTGACTTATTTGAGGC 59.064 47.826 0.00 0.00 34.39 4.70
3106 3421 3.055094 TCTGTCCTGACTTATTTGAGGCC 60.055 47.826 0.00 0.00 0.00 5.19
3107 3422 2.280628 GTCCTGACTTATTTGAGGCCG 58.719 52.381 0.00 0.00 0.00 6.13
3108 3423 1.906574 TCCTGACTTATTTGAGGCCGT 59.093 47.619 0.00 0.00 0.00 5.68
3109 3424 2.304761 TCCTGACTTATTTGAGGCCGTT 59.695 45.455 0.00 0.00 0.00 4.44
3110 3425 2.420022 CCTGACTTATTTGAGGCCGTTG 59.580 50.000 0.00 0.00 0.00 4.10
3111 3426 3.074412 CTGACTTATTTGAGGCCGTTGT 58.926 45.455 0.00 0.00 0.00 3.32
3112 3427 2.811431 TGACTTATTTGAGGCCGTTGTG 59.189 45.455 0.00 0.00 0.00 3.33
3113 3428 2.159382 ACTTATTTGAGGCCGTTGTGG 58.841 47.619 0.00 0.00 42.50 4.17
3114 3429 2.224670 ACTTATTTGAGGCCGTTGTGGA 60.225 45.455 0.00 0.00 42.00 4.02
3120 3435 2.668550 GGCCGTTGTGGACTGTCC 60.669 66.667 19.96 19.96 45.46 4.02
3121 3436 3.041940 GCCGTTGTGGACTGTCCG 61.042 66.667 21.15 9.11 40.17 4.79
3122 3437 2.732016 CCGTTGTGGACTGTCCGA 59.268 61.111 21.15 8.23 40.17 4.55
3123 3438 1.663702 CCGTTGTGGACTGTCCGAC 60.664 63.158 21.15 18.86 40.17 4.79
3124 3439 1.362717 CGTTGTGGACTGTCCGACT 59.637 57.895 21.15 0.00 40.17 4.18
3125 3440 0.939577 CGTTGTGGACTGTCCGACTG 60.940 60.000 21.15 11.79 40.17 3.51
3126 3441 1.069090 TTGTGGACTGTCCGACTGC 59.931 57.895 21.15 9.61 40.17 4.40
3127 3442 2.430921 GTGGACTGTCCGACTGCG 60.431 66.667 21.15 0.00 40.17 5.18
3147 3462 4.148825 GGCACTCAGGTCGCCGAT 62.149 66.667 0.00 0.00 35.79 4.18
3148 3463 2.583593 GCACTCAGGTCGCCGATC 60.584 66.667 0.00 0.00 0.00 3.69
3149 3464 3.069980 GCACTCAGGTCGCCGATCT 62.070 63.158 0.00 0.00 0.00 2.75
3150 3465 1.226802 CACTCAGGTCGCCGATCTG 60.227 63.158 21.09 21.09 41.71 2.90
3151 3466 1.378646 ACTCAGGTCGCCGATCTGA 60.379 57.895 26.87 26.87 46.06 3.27
3152 3467 4.012138 TCAGGTCGCCGATCTGAA 57.988 55.556 26.63 11.07 45.39 3.02
3153 3468 1.511305 TCAGGTCGCCGATCTGAAC 59.489 57.895 26.63 0.00 45.39 3.18
3154 3469 1.874019 CAGGTCGCCGATCTGAACG 60.874 63.158 22.53 0.00 42.86 3.95
3155 3470 2.181021 GGTCGCCGATCTGAACGT 59.819 61.111 6.58 0.00 0.00 3.99
3156 3471 1.028330 AGGTCGCCGATCTGAACGTA 61.028 55.000 0.00 0.00 0.00 3.57
3157 3472 0.591741 GGTCGCCGATCTGAACGTAG 60.592 60.000 6.58 0.52 0.00 3.51
3158 3473 1.063649 TCGCCGATCTGAACGTAGC 59.936 57.895 6.58 2.99 0.00 3.58
3159 3474 1.944676 CGCCGATCTGAACGTAGCC 60.945 63.158 6.58 0.00 0.00 3.93
3160 3475 1.944676 GCCGATCTGAACGTAGCCG 60.945 63.158 6.58 0.00 40.83 5.52
3161 3476 1.299165 CCGATCTGAACGTAGCCGG 60.299 63.158 0.00 0.00 38.78 6.13
3162 3477 1.944676 CGATCTGAACGTAGCCGGC 60.945 63.158 21.89 21.89 38.78 6.13
3163 3478 1.944676 GATCTGAACGTAGCCGGCG 60.945 63.158 23.20 9.91 38.78 6.46
3164 3479 2.332362 GATCTGAACGTAGCCGGCGA 62.332 60.000 23.20 14.61 38.78 5.54
3165 3480 2.337749 ATCTGAACGTAGCCGGCGAG 62.338 60.000 23.20 18.64 38.78 5.03
3166 3481 4.124351 TGAACGTAGCCGGCGAGG 62.124 66.667 24.88 24.88 44.97 4.63
3224 3539 4.899239 CAGTCCCCTCGCGCCATC 62.899 72.222 0.00 0.00 0.00 3.51
3233 3548 4.164664 CGCGCCATCGTGTGCAAT 62.165 61.111 0.00 0.00 41.79 3.56
3234 3549 2.179018 GCGCCATCGTGTGCAATT 59.821 55.556 0.00 0.00 41.35 2.32
3235 3550 1.869132 GCGCCATCGTGTGCAATTC 60.869 57.895 0.00 0.00 41.35 2.17
3236 3551 1.580893 CGCCATCGTGTGCAATTCG 60.581 57.895 0.00 0.00 0.00 3.34
3237 3552 1.793581 GCCATCGTGTGCAATTCGA 59.206 52.632 10.57 10.57 37.96 3.71
3238 3553 0.521242 GCCATCGTGTGCAATTCGAC 60.521 55.000 10.42 0.00 36.46 4.20
3239 3554 0.795698 CCATCGTGTGCAATTCGACA 59.204 50.000 10.42 0.00 36.46 4.35
3240 3555 1.464023 CCATCGTGTGCAATTCGACAC 60.464 52.381 10.42 6.47 39.31 3.67
3241 3556 0.796312 ATCGTGTGCAATTCGACACC 59.204 50.000 10.42 0.00 39.50 4.16
3242 3557 0.530870 TCGTGTGCAATTCGACACCA 60.531 50.000 9.80 0.00 39.50 4.17
3243 3558 0.384230 CGTGTGCAATTCGACACCAC 60.384 55.000 9.80 0.60 39.50 4.16
3244 3559 0.944386 GTGTGCAATTCGACACCACT 59.056 50.000 5.51 0.00 37.15 4.00
3245 3560 0.943673 TGTGCAATTCGACACCACTG 59.056 50.000 0.00 0.00 35.90 3.66
3246 3561 0.385974 GTGCAATTCGACACCACTGC 60.386 55.000 0.00 0.00 0.00 4.40
3247 3562 1.210155 GCAATTCGACACCACTGCC 59.790 57.895 0.00 0.00 0.00 4.85
3248 3563 1.497278 CAATTCGACACCACTGCCG 59.503 57.895 0.00 0.00 0.00 5.69
3249 3564 2.325082 AATTCGACACCACTGCCGC 61.325 57.895 0.00 0.00 0.00 6.53
3250 3565 3.529341 ATTCGACACCACTGCCGCA 62.529 57.895 0.00 0.00 0.00 5.69
3251 3566 4.662961 TCGACACCACTGCCGCAG 62.663 66.667 19.08 19.08 37.52 5.18
3264 3579 3.698382 CGCAGGACGCATTCTCTC 58.302 61.111 0.00 0.00 42.60 3.20
3265 3580 2.226896 CGCAGGACGCATTCTCTCG 61.227 63.158 0.00 0.00 42.60 4.04
3266 3581 1.153745 GCAGGACGCATTCTCTCGT 60.154 57.895 0.00 0.00 41.79 4.18
3267 3582 0.737715 GCAGGACGCATTCTCTCGTT 60.738 55.000 0.00 0.00 41.79 3.85
3268 3583 1.714794 CAGGACGCATTCTCTCGTTT 58.285 50.000 0.00 0.00 39.22 3.60
3269 3584 1.656095 CAGGACGCATTCTCTCGTTTC 59.344 52.381 0.00 0.00 39.22 2.78
3270 3585 1.000145 GGACGCATTCTCTCGTTTCC 59.000 55.000 0.00 0.00 39.22 3.13
3271 3586 1.000145 GACGCATTCTCTCGTTTCCC 59.000 55.000 0.00 0.00 39.22 3.97
3272 3587 0.736325 ACGCATTCTCTCGTTTCCCG 60.736 55.000 0.00 0.00 35.09 5.14
3273 3588 0.736325 CGCATTCTCTCGTTTCCCGT 60.736 55.000 0.00 0.00 37.94 5.28
3274 3589 1.439679 GCATTCTCTCGTTTCCCGTT 58.560 50.000 0.00 0.00 37.94 4.44
3275 3590 1.804748 GCATTCTCTCGTTTCCCGTTT 59.195 47.619 0.00 0.00 37.94 3.60
3276 3591 2.159693 GCATTCTCTCGTTTCCCGTTTC 60.160 50.000 0.00 0.00 37.94 2.78
3277 3592 2.159327 TTCTCTCGTTTCCCGTTTCC 57.841 50.000 0.00 0.00 37.94 3.13
3278 3593 0.038892 TCTCTCGTTTCCCGTTTCCG 60.039 55.000 0.00 0.00 37.94 4.30
3279 3594 1.623973 CTCTCGTTTCCCGTTTCCGC 61.624 60.000 0.00 0.00 37.94 5.54
3280 3595 1.666872 CTCGTTTCCCGTTTCCGCT 60.667 57.895 0.00 0.00 37.94 5.52
3281 3596 1.897398 CTCGTTTCCCGTTTCCGCTG 61.897 60.000 0.00 0.00 37.94 5.18
3282 3597 2.254350 GTTTCCCGTTTCCGCTGC 59.746 61.111 0.00 0.00 0.00 5.25
3283 3598 2.203224 TTTCCCGTTTCCGCTGCA 60.203 55.556 0.00 0.00 0.00 4.41
3284 3599 1.824329 TTTCCCGTTTCCGCTGCAA 60.824 52.632 0.00 0.00 0.00 4.08
3285 3600 2.065906 TTTCCCGTTTCCGCTGCAAC 62.066 55.000 0.00 0.00 0.00 4.17
3286 3601 2.951475 TTCCCGTTTCCGCTGCAACT 62.951 55.000 0.00 0.00 0.00 3.16
3287 3602 1.669760 CCCGTTTCCGCTGCAACTA 60.670 57.895 0.00 0.00 0.00 2.24
3288 3603 1.635663 CCCGTTTCCGCTGCAACTAG 61.636 60.000 0.00 0.00 0.00 2.57
3289 3604 1.635663 CCGTTTCCGCTGCAACTAGG 61.636 60.000 0.00 0.00 0.00 3.02
3290 3605 0.949105 CGTTTCCGCTGCAACTAGGT 60.949 55.000 0.00 0.00 0.00 3.08
3291 3606 1.670674 CGTTTCCGCTGCAACTAGGTA 60.671 52.381 0.00 0.00 0.00 3.08
3292 3607 1.730612 GTTTCCGCTGCAACTAGGTAC 59.269 52.381 0.00 0.00 0.00 3.34
3293 3608 0.108992 TTCCGCTGCAACTAGGTACG 60.109 55.000 0.00 0.00 0.00 3.67
3294 3609 1.518572 CCGCTGCAACTAGGTACGG 60.519 63.158 0.00 0.00 0.00 4.02
3295 3610 1.214589 CGCTGCAACTAGGTACGGT 59.785 57.895 0.00 0.00 0.00 4.83
3296 3611 0.452987 CGCTGCAACTAGGTACGGTA 59.547 55.000 0.00 0.00 0.00 4.02
3297 3612 1.796617 CGCTGCAACTAGGTACGGTAC 60.797 57.143 9.82 9.82 0.00 3.34
3298 3613 1.203052 GCTGCAACTAGGTACGGTACA 59.797 52.381 19.14 0.00 0.00 2.90
3299 3614 2.872370 CTGCAACTAGGTACGGTACAC 58.128 52.381 19.14 9.17 0.00 2.90
3300 3615 2.229543 CTGCAACTAGGTACGGTACACA 59.770 50.000 19.14 5.87 0.00 3.72
3301 3616 2.827322 TGCAACTAGGTACGGTACACAT 59.173 45.455 19.14 7.69 0.00 3.21
3302 3617 3.119388 TGCAACTAGGTACGGTACACATC 60.119 47.826 19.14 2.75 0.00 3.06
3303 3618 3.119388 GCAACTAGGTACGGTACACATCA 60.119 47.826 19.14 0.00 0.00 3.07
3304 3619 4.669318 CAACTAGGTACGGTACACATCAG 58.331 47.826 19.14 10.32 0.00 2.90
3305 3620 4.226427 ACTAGGTACGGTACACATCAGA 57.774 45.455 19.14 0.00 0.00 3.27
3306 3621 4.789807 ACTAGGTACGGTACACATCAGAT 58.210 43.478 19.14 0.00 0.00 2.90
3307 3622 4.579340 ACTAGGTACGGTACACATCAGATG 59.421 45.833 19.14 9.03 0.00 2.90
3308 3623 3.628008 AGGTACGGTACACATCAGATGA 58.372 45.455 17.81 0.00 0.00 2.92
3309 3624 3.632604 AGGTACGGTACACATCAGATGAG 59.367 47.826 17.81 11.80 0.00 2.90
3310 3625 2.586258 ACGGTACACATCAGATGAGC 57.414 50.000 17.81 3.71 0.00 4.26
3311 3626 1.137086 ACGGTACACATCAGATGAGCC 59.863 52.381 17.81 11.19 0.00 4.70
3312 3627 1.858091 GGTACACATCAGATGAGCCG 58.142 55.000 17.81 5.08 0.00 5.52
3313 3628 1.539065 GGTACACATCAGATGAGCCGG 60.539 57.143 17.81 0.00 0.00 6.13
3314 3629 0.104855 TACACATCAGATGAGCCGGC 59.895 55.000 21.89 21.89 0.00 6.13
3315 3630 1.145598 CACATCAGATGAGCCGGCT 59.854 57.895 33.48 33.48 0.00 5.52
3316 3631 1.145598 ACATCAGATGAGCCGGCTG 59.854 57.895 38.41 20.98 0.00 4.85
3317 3632 2.110627 ATCAGATGAGCCGGCTGC 59.889 61.111 38.41 25.05 41.71 5.25
3318 3633 2.738938 ATCAGATGAGCCGGCTGCA 61.739 57.895 38.41 29.77 44.83 4.41
3319 3634 2.053259 ATCAGATGAGCCGGCTGCAT 62.053 55.000 38.41 32.79 44.83 3.96
3320 3635 2.203167 AGATGAGCCGGCTGCATG 60.203 61.111 38.41 0.00 44.83 4.06
3321 3636 2.203112 GATGAGCCGGCTGCATGA 60.203 61.111 38.41 12.64 44.83 3.07
3322 3637 1.600076 GATGAGCCGGCTGCATGAT 60.600 57.895 38.41 17.16 44.83 2.45
3323 3638 1.575576 GATGAGCCGGCTGCATGATC 61.576 60.000 38.41 21.31 44.83 2.92
3324 3639 2.976903 GAGCCGGCTGCATGATCC 60.977 66.667 38.41 13.51 44.83 3.36
3325 3640 4.575973 AGCCGGCTGCATGATCCC 62.576 66.667 32.33 0.00 44.83 3.85
3328 3643 4.923942 CGGCTGCATGATCCCGCT 62.924 66.667 0.50 0.00 33.77 5.52
3329 3644 2.517875 GGCTGCATGATCCCGCTT 60.518 61.111 0.50 0.00 0.00 4.68
3330 3645 2.550101 GGCTGCATGATCCCGCTTC 61.550 63.158 0.50 0.00 0.00 3.86
3331 3646 2.890109 GCTGCATGATCCCGCTTCG 61.890 63.158 0.00 0.00 0.00 3.79
3332 3647 1.522355 CTGCATGATCCCGCTTCGT 60.522 57.895 0.00 0.00 0.00 3.85
3333 3648 1.493950 CTGCATGATCCCGCTTCGTC 61.494 60.000 0.00 0.00 0.00 4.20
3334 3649 2.589492 GCATGATCCCGCTTCGTCG 61.589 63.158 0.00 0.00 0.00 5.12
3365 3680 4.783621 GTGGGCCGCTCTGCATCA 62.784 66.667 10.52 0.00 0.00 3.07
3366 3681 4.478371 TGGGCCGCTCTGCATCAG 62.478 66.667 0.00 0.00 0.00 2.90
3373 3688 4.478371 CTCTGCATCAGCCGGCCA 62.478 66.667 26.15 12.94 41.13 5.36
3374 3689 3.982316 CTCTGCATCAGCCGGCCAA 62.982 63.158 26.15 12.63 41.13 4.52
3375 3690 3.515286 CTGCATCAGCCGGCCAAG 61.515 66.667 26.15 14.33 41.13 3.61
3388 3703 2.556286 GCCAAGCCAACTGGAGTAC 58.444 57.895 0.00 0.00 37.39 2.73
3389 3704 0.036875 GCCAAGCCAACTGGAGTACT 59.963 55.000 0.00 0.00 37.39 2.73
3390 3705 1.946283 GCCAAGCCAACTGGAGTACTC 60.946 57.143 14.87 14.87 37.39 2.59
3391 3706 1.673033 CCAAGCCAACTGGAGTACTCG 60.673 57.143 16.56 6.52 37.39 4.18
3392 3707 1.272490 CAAGCCAACTGGAGTACTCGA 59.728 52.381 16.56 12.04 37.39 4.04
3393 3708 0.889306 AGCCAACTGGAGTACTCGAC 59.111 55.000 16.56 4.56 37.39 4.20
3394 3709 0.601558 GCCAACTGGAGTACTCGACA 59.398 55.000 16.56 8.99 37.39 4.35
3395 3710 1.204941 GCCAACTGGAGTACTCGACAT 59.795 52.381 16.56 0.00 37.39 3.06
3396 3711 2.735762 GCCAACTGGAGTACTCGACATC 60.736 54.545 16.56 3.10 37.39 3.06
3397 3712 2.478031 CCAACTGGAGTACTCGACATCG 60.478 54.545 16.56 3.77 37.89 3.84
3398 3713 0.733729 ACTGGAGTACTCGACATCGC 59.266 55.000 16.56 1.67 39.60 4.58
3399 3714 0.029567 CTGGAGTACTCGACATCGCC 59.970 60.000 16.56 1.46 39.60 5.54
3400 3715 0.393944 TGGAGTACTCGACATCGCCT 60.394 55.000 16.56 0.00 39.60 5.52
3401 3716 0.308376 GGAGTACTCGACATCGCCTC 59.692 60.000 16.56 0.00 39.60 4.70
3402 3717 0.042013 GAGTACTCGACATCGCCTCG 60.042 60.000 7.22 0.00 39.60 4.63
3403 3718 1.009900 GTACTCGACATCGCCTCGG 60.010 63.158 0.00 0.00 39.60 4.63
3404 3719 2.831366 TACTCGACATCGCCTCGGC 61.831 63.158 0.00 0.00 39.60 5.54
3428 3743 4.143333 CGATGGAACGGACGGGCT 62.143 66.667 0.00 0.00 0.00 5.19
3429 3744 2.202892 GATGGAACGGACGGGCTC 60.203 66.667 0.00 0.00 0.00 4.70
3430 3745 3.735037 GATGGAACGGACGGGCTCC 62.735 68.421 0.00 0.06 35.33 4.70
3432 3747 4.754667 GGAACGGACGGGCTCCAC 62.755 72.222 0.00 0.00 39.39 4.02
3433 3748 4.754667 GAACGGACGGGCTCCACC 62.755 72.222 0.00 0.00 39.39 4.61
3486 3801 2.576298 GCATCCTTGCTTGCTTCCT 58.424 52.632 0.00 0.00 45.77 3.36
3487 3802 0.893447 GCATCCTTGCTTGCTTCCTT 59.107 50.000 0.00 0.00 45.77 3.36
3488 3803 1.274447 GCATCCTTGCTTGCTTCCTTT 59.726 47.619 0.00 0.00 45.77 3.11
3489 3804 2.673326 GCATCCTTGCTTGCTTCCTTTC 60.673 50.000 0.00 0.00 45.77 2.62
3490 3805 1.620822 TCCTTGCTTGCTTCCTTTCC 58.379 50.000 0.00 0.00 0.00 3.13
3491 3806 1.145738 TCCTTGCTTGCTTCCTTTCCT 59.854 47.619 0.00 0.00 0.00 3.36
3492 3807 1.966354 CCTTGCTTGCTTCCTTTCCTT 59.034 47.619 0.00 0.00 0.00 3.36
3493 3808 2.029560 CCTTGCTTGCTTCCTTTCCTTC 60.030 50.000 0.00 0.00 0.00 3.46
3494 3809 1.238439 TGCTTGCTTCCTTTCCTTCG 58.762 50.000 0.00 0.00 0.00 3.79
3495 3810 0.109551 GCTTGCTTCCTTTCCTTCGC 60.110 55.000 0.00 0.00 0.00 4.70
3496 3811 0.523519 CTTGCTTCCTTTCCTTCGCC 59.476 55.000 0.00 0.00 0.00 5.54
3497 3812 0.893727 TTGCTTCCTTTCCTTCGCCC 60.894 55.000 0.00 0.00 0.00 6.13
3498 3813 2.046864 GCTTCCTTTCCTTCGCCCC 61.047 63.158 0.00 0.00 0.00 5.80
3499 3814 1.745489 CTTCCTTTCCTTCGCCCCG 60.745 63.158 0.00 0.00 0.00 5.73
3500 3815 3.912745 TTCCTTTCCTTCGCCCCGC 62.913 63.158 0.00 0.00 0.00 6.13
3525 3840 4.269523 GCACCTGTCACTGGCCCA 62.270 66.667 0.00 0.00 0.00 5.36
3526 3841 2.281761 CACCTGTCACTGGCCCAC 60.282 66.667 0.00 0.00 0.00 4.61
3527 3842 2.448542 ACCTGTCACTGGCCCACT 60.449 61.111 0.00 0.00 0.00 4.00
3528 3843 2.033141 CCTGTCACTGGCCCACTG 59.967 66.667 0.00 0.00 0.00 3.66
3529 3844 2.033141 CTGTCACTGGCCCACTGG 59.967 66.667 0.00 0.00 0.00 4.00
3541 3856 2.332063 CCCACTGGCACTGGTATTAG 57.668 55.000 11.53 0.00 0.00 1.73
3542 3857 1.134098 CCCACTGGCACTGGTATTAGG 60.134 57.143 11.53 0.00 0.00 2.69
3543 3858 1.668419 CACTGGCACTGGTATTAGGC 58.332 55.000 0.00 0.00 0.00 3.93
3544 3859 1.065491 CACTGGCACTGGTATTAGGCA 60.065 52.381 0.00 0.00 35.18 4.75
3545 3860 1.959042 CTGGCACTGGTATTAGGCAG 58.041 55.000 0.00 0.00 45.95 4.85
3546 3861 0.107214 TGGCACTGGTATTAGGCAGC 60.107 55.000 0.00 0.00 32.48 5.25
3547 3862 0.819666 GGCACTGGTATTAGGCAGCC 60.820 60.000 1.84 1.84 0.00 4.85
3548 3863 0.181350 GCACTGGTATTAGGCAGCCT 59.819 55.000 20.63 20.63 37.71 4.58
3549 3864 1.408822 GCACTGGTATTAGGCAGCCTT 60.409 52.381 22.26 4.77 34.61 4.35
3550 3865 2.945890 GCACTGGTATTAGGCAGCCTTT 60.946 50.000 22.26 10.67 34.61 3.11
3551 3866 2.684881 CACTGGTATTAGGCAGCCTTTG 59.315 50.000 22.26 4.96 34.61 2.77
3562 3877 2.675075 GCCTTTGCTGGGCCGTTA 60.675 61.111 0.00 0.00 43.49 3.18
3563 3878 2.989881 GCCTTTGCTGGGCCGTTAC 61.990 63.158 0.00 0.00 43.49 2.50
3564 3879 2.340328 CCTTTGCTGGGCCGTTACC 61.340 63.158 0.00 0.00 0.00 2.85
3565 3880 2.670251 TTTGCTGGGCCGTTACCG 60.670 61.111 0.00 0.00 0.00 4.02
3566 3881 3.479127 TTTGCTGGGCCGTTACCGT 62.479 57.895 0.00 0.00 0.00 4.83
3567 3882 4.690719 TGCTGGGCCGTTACCGTG 62.691 66.667 0.00 0.00 0.00 4.94
3569 3884 4.770874 CTGGGCCGTTACCGTGGG 62.771 72.222 0.00 0.00 0.00 4.61
3592 3907 3.222855 CAGCGGAGAGAGCGGGAT 61.223 66.667 0.00 0.00 40.04 3.85
3593 3908 1.899054 CAGCGGAGAGAGCGGGATA 60.899 63.158 0.00 0.00 40.04 2.59
3594 3909 1.075836 AGCGGAGAGAGCGGGATAT 59.924 57.895 0.00 0.00 40.04 1.63
3595 3910 1.214062 GCGGAGAGAGCGGGATATG 59.786 63.158 0.00 0.00 0.00 1.78
3596 3911 1.244697 GCGGAGAGAGCGGGATATGA 61.245 60.000 0.00 0.00 0.00 2.15
3597 3912 1.468985 CGGAGAGAGCGGGATATGAT 58.531 55.000 0.00 0.00 0.00 2.45
3598 3913 2.644676 CGGAGAGAGCGGGATATGATA 58.355 52.381 0.00 0.00 0.00 2.15
3599 3914 3.218453 CGGAGAGAGCGGGATATGATAT 58.782 50.000 0.00 0.00 0.00 1.63
3600 3915 3.004210 CGGAGAGAGCGGGATATGATATG 59.996 52.174 0.00 0.00 0.00 1.78
3601 3916 4.211125 GGAGAGAGCGGGATATGATATGA 58.789 47.826 0.00 0.00 0.00 2.15
3602 3917 4.278170 GGAGAGAGCGGGATATGATATGAG 59.722 50.000 0.00 0.00 0.00 2.90
3603 3918 4.214310 AGAGAGCGGGATATGATATGAGG 58.786 47.826 0.00 0.00 0.00 3.86
3604 3919 2.697751 AGAGCGGGATATGATATGAGGC 59.302 50.000 0.00 0.00 0.00 4.70
3605 3920 1.410517 AGCGGGATATGATATGAGGCG 59.589 52.381 0.00 0.00 0.00 5.52
3606 3921 1.539065 GCGGGATATGATATGAGGCGG 60.539 57.143 0.00 0.00 0.00 6.13
3607 3922 1.539065 CGGGATATGATATGAGGCGGC 60.539 57.143 0.00 0.00 0.00 6.53
3608 3923 1.765314 GGGATATGATATGAGGCGGCT 59.235 52.381 13.09 13.09 0.00 5.52
3609 3924 2.171448 GGGATATGATATGAGGCGGCTT 59.829 50.000 14.76 0.00 0.00 4.35
3610 3925 3.370953 GGGATATGATATGAGGCGGCTTT 60.371 47.826 14.76 6.79 0.00 3.51
3611 3926 4.265073 GGATATGATATGAGGCGGCTTTT 58.735 43.478 14.76 6.38 0.00 2.27
3612 3927 4.095483 GGATATGATATGAGGCGGCTTTTG 59.905 45.833 14.76 0.00 0.00 2.44
3613 3928 1.024271 TGATATGAGGCGGCTTTTGC 58.976 50.000 14.76 0.00 46.64 3.68
3630 3945 4.386413 CGAAGCAGGTGGAAGCTT 57.614 55.556 0.00 0.00 46.63 3.74
3632 3947 4.830573 AAGCAGGTGGAAGCTTCC 57.169 55.556 34.48 34.48 46.63 3.46
3633 3948 1.302832 AAGCAGGTGGAAGCTTCCG 60.303 57.895 34.49 23.40 46.63 4.30
3634 3949 2.747855 GCAGGTGGAAGCTTCCGG 60.748 66.667 34.49 25.16 46.63 5.14
3635 3950 2.045926 CAGGTGGAAGCTTCCGGG 60.046 66.667 34.49 21.79 46.63 5.73
3636 3951 4.035102 AGGTGGAAGCTTCCGGGC 62.035 66.667 34.49 26.61 46.63 6.13
3658 3973 2.644992 CGGGGAGCACAACAAAGC 59.355 61.111 0.00 0.00 0.00 3.51
3659 3974 2.644992 GGGGAGCACAACAAAGCG 59.355 61.111 0.00 0.00 35.48 4.68
3660 3975 1.896660 GGGGAGCACAACAAAGCGA 60.897 57.895 0.00 0.00 35.48 4.93
3661 3976 1.244019 GGGGAGCACAACAAAGCGAT 61.244 55.000 0.00 0.00 35.48 4.58
3662 3977 0.598065 GGGAGCACAACAAAGCGATT 59.402 50.000 0.00 0.00 35.48 3.34
3663 3978 1.666888 GGGAGCACAACAAAGCGATTG 60.667 52.381 4.04 4.04 44.95 2.67
3664 3979 1.266718 GGAGCACAACAAAGCGATTGA 59.733 47.619 11.54 0.00 41.85 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.121030 CGCAACTTGCTCCTCCCG 61.121 66.667 11.93 0.00 42.25 5.14
32 33 2.747855 CCGCAACTTGCTCCTCCC 60.748 66.667 11.93 0.00 42.25 4.30
33 34 1.743252 CTCCGCAACTTGCTCCTCC 60.743 63.158 11.93 0.00 42.25 4.30
225 252 3.646715 CCAGACGGCCCAGGGAAA 61.647 66.667 10.89 0.00 0.00 3.13
335 362 1.007271 ACACGAGACCGCAGTTGAG 60.007 57.895 0.00 0.00 39.95 3.02
343 370 0.454620 GCTAGACACACACGAGACCG 60.455 60.000 0.00 0.00 42.50 4.79
430 474 8.232913 TCCAAGCAACAAGATTTTAGTTTACT 57.767 30.769 0.00 0.00 0.00 2.24
456 500 2.628178 AGTCGACACTCAATCTGAACCA 59.372 45.455 19.50 0.00 0.00 3.67
466 510 3.792401 ACAAATTCACAGTCGACACTCA 58.208 40.909 19.50 0.00 0.00 3.41
496 540 7.440523 ACAGTTACTTTGAAGAAATAGCTGG 57.559 36.000 0.00 0.00 0.00 4.85
691 743 1.582968 CACTGTGCATCAACCTGGC 59.417 57.895 0.00 0.00 0.00 4.85
935 995 1.274728 AGTAAGCAGCAGGTCAGTGAG 59.725 52.381 0.00 0.00 0.00 3.51
1087 1149 7.157347 TCTAATAGCAGCAGGAAATCAGTATG 58.843 38.462 0.00 0.00 37.54 2.39
1127 1189 4.891756 CCATTTTCTGCCAGAGGAATACAT 59.108 41.667 0.00 0.00 0.00 2.29
1220 1282 1.079405 TTCGCTCATTCCGGACACC 60.079 57.895 1.83 0.00 0.00 4.16
1280 1342 6.738114 TCAGAAAAGAAATAGTTGGCAAGTG 58.262 36.000 17.67 0.00 0.00 3.16
1329 1394 8.131847 TCTGTATTTCCAGGAGAGATGATATG 57.868 38.462 0.00 0.00 33.14 1.78
1393 1458 3.836365 TCAAGGTCCGCAATCATCATA 57.164 42.857 0.00 0.00 0.00 2.15
1394 1459 2.715749 TCAAGGTCCGCAATCATCAT 57.284 45.000 0.00 0.00 0.00 2.45
1476 1541 2.202690 TTCGTGTAGCCATCGCGG 60.203 61.111 6.13 0.00 41.18 6.46
1518 1586 2.165998 GAATTGCCCAGAGACAAAGCT 58.834 47.619 0.00 0.00 0.00 3.74
1612 1680 8.378172 ACACTTCGAATTCAGAAATTAGTCAA 57.622 30.769 6.22 0.00 35.21 3.18
1615 1683 8.621286 ACAAACACTTCGAATTCAGAAATTAGT 58.379 29.630 6.22 2.24 35.21 2.24
1757 1825 5.957132 ACAGGGATGGCATAAATATCACTT 58.043 37.500 0.00 0.00 32.48 3.16
1768 1836 0.920763 TGAGGGAACAGGGATGGCAT 60.921 55.000 0.00 0.00 0.00 4.40
1771 1839 1.879575 TAGTGAGGGAACAGGGATGG 58.120 55.000 0.00 0.00 0.00 3.51
1879 2149 9.213777 TCTCAATAGTCATTCCAGTTATACCTT 57.786 33.333 0.00 0.00 0.00 3.50
1899 2169 5.769662 TCATGTTTAGTTGCCTTGTCTCAAT 59.230 36.000 0.00 0.00 0.00 2.57
1960 2231 5.393787 CCAGTATGCTGCTCAACATTGAAAT 60.394 40.000 5.11 0.00 41.26 2.17
1988 2259 9.173939 GATATCTGAAATCAAAATAAGTTGCCG 57.826 33.333 0.00 0.00 0.00 5.69
2279 2550 5.500645 AAAATAATACCTTGCGGCTCTTC 57.499 39.130 0.00 0.00 0.00 2.87
2282 2553 5.629435 GCATAAAAATAATACCTTGCGGCTC 59.371 40.000 0.00 0.00 0.00 4.70
2365 2636 9.203421 CTAAATTCATTTGTACAGGGGAAAAAC 57.797 33.333 0.00 0.00 0.00 2.43
2368 2639 8.485578 AACTAAATTCATTTGTACAGGGGAAA 57.514 30.769 0.00 0.00 0.00 3.13
2371 2642 7.461182 TGAACTAAATTCATTTGTACAGGGG 57.539 36.000 0.00 0.00 42.62 4.79
2407 2682 9.748708 GGCATGAATGTTATGTTATGTTATGTT 57.251 29.630 0.00 0.00 0.00 2.71
2408 2683 8.911965 TGGCATGAATGTTATGTTATGTTATGT 58.088 29.630 0.00 0.00 0.00 2.29
2409 2684 9.184062 GTGGCATGAATGTTATGTTATGTTATG 57.816 33.333 0.00 0.00 0.00 1.90
2410 2685 9.135189 AGTGGCATGAATGTTATGTTATGTTAT 57.865 29.630 0.00 0.00 0.00 1.89
2411 2686 8.404765 CAGTGGCATGAATGTTATGTTATGTTA 58.595 33.333 0.00 0.00 0.00 2.41
2412 2687 7.093814 ACAGTGGCATGAATGTTATGTTATGTT 60.094 33.333 0.00 0.00 0.00 2.71
2434 2709 0.830444 TGGAGGTACGGCTGAACAGT 60.830 55.000 0.00 0.00 0.00 3.55
2517 2792 0.973496 AGGCCTCGGACTTCTCCTTC 60.973 60.000 0.00 0.00 33.79 3.46
2584 2862 4.166011 GAACATGCCGCCGTCTGC 62.166 66.667 0.00 0.00 0.00 4.26
2845 3154 1.976898 CACCTGCCATGCCACAAAT 59.023 52.632 0.00 0.00 0.00 2.32
2958 3273 1.531149 CACGCCGGGAATGCTTATTAG 59.469 52.381 2.18 0.00 0.00 1.73
2965 3280 4.256090 GCATCACGCCGGGAATGC 62.256 66.667 2.18 10.67 32.94 3.56
2994 3309 2.888998 GAAACACCGCCACGACCAC 61.889 63.158 0.00 0.00 0.00 4.16
2995 3310 2.589442 GAAACACCGCCACGACCA 60.589 61.111 0.00 0.00 0.00 4.02
2996 3311 1.441732 AAAGAAACACCGCCACGACC 61.442 55.000 0.00 0.00 0.00 4.79
2997 3312 0.379316 AAAAGAAACACCGCCACGAC 59.621 50.000 0.00 0.00 0.00 4.34
2998 3313 0.378962 CAAAAGAAACACCGCCACGA 59.621 50.000 0.00 0.00 0.00 4.35
3004 3319 0.678950 ATGGCCCAAAAGAAACACCG 59.321 50.000 0.00 0.00 0.00 4.94
3025 3340 5.221303 ACCATTTCATCAAGTTGTTGGACAG 60.221 40.000 12.81 1.41 34.09 3.51
3029 3344 7.377398 TCATAACCATTTCATCAAGTTGTTGG 58.623 34.615 12.81 9.14 34.09 3.77
3034 3349 8.812513 TCATCTCATAACCATTTCATCAAGTT 57.187 30.769 0.00 0.00 0.00 2.66
3041 3356 6.595326 GTGTGTCTCATCTCATAACCATTTCA 59.405 38.462 0.00 0.00 0.00 2.69
3042 3357 6.595326 TGTGTGTCTCATCTCATAACCATTTC 59.405 38.462 0.00 0.00 0.00 2.17
3043 3358 6.475504 TGTGTGTCTCATCTCATAACCATTT 58.524 36.000 0.00 0.00 0.00 2.32
3044 3359 6.053632 TGTGTGTCTCATCTCATAACCATT 57.946 37.500 0.00 0.00 0.00 3.16
3045 3360 5.682234 TGTGTGTCTCATCTCATAACCAT 57.318 39.130 0.00 0.00 0.00 3.55
3046 3361 5.423290 AGATGTGTGTCTCATCTCATAACCA 59.577 40.000 8.03 0.00 45.78 3.67
3047 3362 5.911752 AGATGTGTGTCTCATCTCATAACC 58.088 41.667 8.03 0.00 45.78 2.85
3055 3370 5.749588 CAGATCTGAAGATGTGTGTCTCATC 59.250 44.000 18.34 0.00 39.94 2.92
3056 3371 5.662456 CAGATCTGAAGATGTGTGTCTCAT 58.338 41.667 18.34 0.00 39.94 2.90
3057 3372 5.069501 CAGATCTGAAGATGTGTGTCTCA 57.930 43.478 18.34 0.00 39.94 3.27
3065 3380 4.282957 ACAGACACACAGATCTGAAGATGT 59.717 41.667 29.27 22.97 44.32 3.06
3066 3381 4.818642 ACAGACACACAGATCTGAAGATG 58.181 43.478 29.27 18.23 44.32 2.90
3067 3382 4.081752 GGACAGACACACAGATCTGAAGAT 60.082 45.833 29.27 11.44 44.32 2.40
3068 3383 3.256879 GGACAGACACACAGATCTGAAGA 59.743 47.826 29.27 0.00 44.32 2.87
3069 3384 3.257873 AGGACAGACACACAGATCTGAAG 59.742 47.826 29.27 21.21 44.32 3.02
3070 3385 3.006217 CAGGACAGACACACAGATCTGAA 59.994 47.826 29.27 0.00 44.32 3.02
3071 3386 2.560105 CAGGACAGACACACAGATCTGA 59.440 50.000 29.27 0.00 44.32 3.27
3072 3387 2.560105 TCAGGACAGACACACAGATCTG 59.440 50.000 21.37 21.37 46.49 2.90
3073 3388 2.560542 GTCAGGACAGACACACAGATCT 59.439 50.000 0.00 0.00 38.40 2.75
3074 3389 2.560542 AGTCAGGACAGACACACAGATC 59.439 50.000 1.84 0.00 40.98 2.75
3075 3390 2.603021 AGTCAGGACAGACACACAGAT 58.397 47.619 1.84 0.00 40.98 2.90
3076 3391 2.073252 AGTCAGGACAGACACACAGA 57.927 50.000 1.84 0.00 40.98 3.41
3077 3392 2.898729 AAGTCAGGACAGACACACAG 57.101 50.000 1.84 0.00 40.98 3.66
3078 3393 4.955811 AATAAGTCAGGACAGACACACA 57.044 40.909 1.84 0.00 40.98 3.72
3079 3394 5.297547 TCAAATAAGTCAGGACAGACACAC 58.702 41.667 1.84 0.00 40.98 3.82
3080 3395 5.511373 CCTCAAATAAGTCAGGACAGACACA 60.511 44.000 1.84 0.00 40.98 3.72
3081 3396 4.932200 CCTCAAATAAGTCAGGACAGACAC 59.068 45.833 1.84 0.00 40.98 3.67
3082 3397 4.563580 GCCTCAAATAAGTCAGGACAGACA 60.564 45.833 1.84 0.00 40.98 3.41
3083 3398 3.935828 GCCTCAAATAAGTCAGGACAGAC 59.064 47.826 1.84 0.00 38.81 3.51
3084 3399 3.055094 GGCCTCAAATAAGTCAGGACAGA 60.055 47.826 0.00 0.00 33.69 3.41
3085 3400 3.274288 GGCCTCAAATAAGTCAGGACAG 58.726 50.000 0.00 0.00 33.69 3.51
3086 3401 2.354704 CGGCCTCAAATAAGTCAGGACA 60.355 50.000 0.00 0.00 32.94 4.02
3087 3402 2.280628 CGGCCTCAAATAAGTCAGGAC 58.719 52.381 0.00 0.00 0.00 3.85
3088 3403 1.906574 ACGGCCTCAAATAAGTCAGGA 59.093 47.619 0.00 0.00 0.00 3.86
3089 3404 2.403252 ACGGCCTCAAATAAGTCAGG 57.597 50.000 0.00 0.00 0.00 3.86
3090 3405 3.074412 ACAACGGCCTCAAATAAGTCAG 58.926 45.455 0.00 0.00 0.00 3.51
3091 3406 2.811431 CACAACGGCCTCAAATAAGTCA 59.189 45.455 0.00 0.00 0.00 3.41
3092 3407 2.161609 CCACAACGGCCTCAAATAAGTC 59.838 50.000 0.00 0.00 0.00 3.01
3093 3408 2.159382 CCACAACGGCCTCAAATAAGT 58.841 47.619 0.00 0.00 0.00 2.24
3094 3409 2.161609 GTCCACAACGGCCTCAAATAAG 59.838 50.000 0.00 0.00 33.14 1.73
3095 3410 2.156098 GTCCACAACGGCCTCAAATAA 58.844 47.619 0.00 0.00 33.14 1.40
3096 3411 1.349688 AGTCCACAACGGCCTCAAATA 59.650 47.619 0.00 0.00 33.14 1.40
3097 3412 0.110486 AGTCCACAACGGCCTCAAAT 59.890 50.000 0.00 0.00 33.14 2.32
3098 3413 0.817634 CAGTCCACAACGGCCTCAAA 60.818 55.000 0.00 0.00 33.14 2.69
3099 3414 1.227823 CAGTCCACAACGGCCTCAA 60.228 57.895 0.00 0.00 33.14 3.02
3100 3415 2.377628 GACAGTCCACAACGGCCTCA 62.378 60.000 0.00 0.00 33.14 3.86
3101 3416 1.668151 GACAGTCCACAACGGCCTC 60.668 63.158 0.00 0.00 33.14 4.70
3102 3417 2.426023 GACAGTCCACAACGGCCT 59.574 61.111 0.00 0.00 33.14 5.19
3103 3418 2.668550 GGACAGTCCACAACGGCC 60.669 66.667 15.43 0.00 36.28 6.13
3104 3419 3.041940 CGGACAGTCCACAACGGC 61.042 66.667 20.13 0.00 35.91 5.68
3105 3420 1.663702 GTCGGACAGTCCACAACGG 60.664 63.158 20.13 1.97 35.91 4.44
3106 3421 0.939577 CAGTCGGACAGTCCACAACG 60.940 60.000 20.13 5.15 35.91 4.10
3107 3422 1.222115 GCAGTCGGACAGTCCACAAC 61.222 60.000 20.13 13.47 35.91 3.32
3108 3423 1.069090 GCAGTCGGACAGTCCACAA 59.931 57.895 20.13 1.23 35.91 3.33
3109 3424 2.734591 GCAGTCGGACAGTCCACA 59.265 61.111 20.13 2.05 35.91 4.17
3110 3425 2.430921 CGCAGTCGGACAGTCCAC 60.431 66.667 20.13 15.51 35.91 4.02
3124 3439 3.695606 GACCTGAGTGCCTCCGCA 61.696 66.667 0.50 0.00 44.78 5.69
3125 3440 4.803426 CGACCTGAGTGCCTCCGC 62.803 72.222 0.50 0.00 0.00 5.54
3126 3441 4.803426 GCGACCTGAGTGCCTCCG 62.803 72.222 0.00 0.00 0.00 4.63
3127 3442 4.459089 GGCGACCTGAGTGCCTCC 62.459 72.222 0.98 0.00 45.40 4.30
3128 3443 4.803426 CGGCGACCTGAGTGCCTC 62.803 72.222 0.00 0.00 46.67 4.70
3130 3445 4.148825 ATCGGCGACCTGAGTGCC 62.149 66.667 13.76 0.00 45.39 5.01
3131 3446 2.583593 GATCGGCGACCTGAGTGC 60.584 66.667 13.76 0.00 0.00 4.40
3132 3447 1.226802 CAGATCGGCGACCTGAGTG 60.227 63.158 27.06 0.00 0.00 3.51
3133 3448 0.965866 TTCAGATCGGCGACCTGAGT 60.966 55.000 30.74 6.05 38.08 3.41
3134 3449 0.526524 GTTCAGATCGGCGACCTGAG 60.527 60.000 30.74 8.21 38.08 3.35
3135 3450 1.511305 GTTCAGATCGGCGACCTGA 59.489 57.895 29.36 29.36 35.38 3.86
3136 3451 1.874019 CGTTCAGATCGGCGACCTG 60.874 63.158 25.31 25.31 0.00 4.00
3137 3452 1.028330 TACGTTCAGATCGGCGACCT 61.028 55.000 13.76 4.00 0.00 3.85
3138 3453 0.591741 CTACGTTCAGATCGGCGACC 60.592 60.000 13.76 0.24 0.00 4.79
3139 3454 1.201098 GCTACGTTCAGATCGGCGAC 61.201 60.000 13.76 6.55 0.00 5.19
3140 3455 1.063649 GCTACGTTCAGATCGGCGA 59.936 57.895 13.87 13.87 0.00 5.54
3141 3456 1.944676 GGCTACGTTCAGATCGGCG 60.945 63.158 0.00 0.00 0.00 6.46
3142 3457 1.944676 CGGCTACGTTCAGATCGGC 60.945 63.158 0.00 0.50 34.81 5.54
3143 3458 1.299165 CCGGCTACGTTCAGATCGG 60.299 63.158 0.00 0.00 38.78 4.18
3144 3459 1.944676 GCCGGCTACGTTCAGATCG 60.945 63.158 22.15 0.00 38.78 3.69
3145 3460 1.944676 CGCCGGCTACGTTCAGATC 60.945 63.158 26.68 0.00 38.78 2.75
3146 3461 2.104331 CGCCGGCTACGTTCAGAT 59.896 61.111 26.68 0.00 38.78 2.90
3147 3462 3.047718 CTCGCCGGCTACGTTCAGA 62.048 63.158 26.68 10.65 38.78 3.27
3148 3463 2.579787 CTCGCCGGCTACGTTCAG 60.580 66.667 26.68 6.06 38.78 3.02
3149 3464 4.124351 CCTCGCCGGCTACGTTCA 62.124 66.667 26.68 0.00 38.78 3.18
3207 3522 4.899239 GATGGCGCGAGGGGACTG 62.899 72.222 12.10 0.00 44.43 3.51
3216 3531 3.665825 AATTGCACACGATGGCGCG 62.666 57.895 0.00 0.00 42.48 6.86
3217 3532 1.869132 GAATTGCACACGATGGCGC 60.869 57.895 0.00 0.00 42.48 6.53
3218 3533 1.580893 CGAATTGCACACGATGGCG 60.581 57.895 0.00 0.00 44.79 5.69
3219 3534 0.521242 GTCGAATTGCACACGATGGC 60.521 55.000 11.16 0.00 38.27 4.40
3220 3535 0.795698 TGTCGAATTGCACACGATGG 59.204 50.000 11.16 0.00 38.27 3.51
3221 3536 1.464023 GGTGTCGAATTGCACACGATG 60.464 52.381 11.16 0.00 43.34 3.84
3222 3537 0.796312 GGTGTCGAATTGCACACGAT 59.204 50.000 11.16 0.00 43.34 3.73
3223 3538 0.530870 TGGTGTCGAATTGCACACGA 60.531 50.000 6.27 5.22 43.34 4.35
3224 3539 0.384230 GTGGTGTCGAATTGCACACG 60.384 55.000 6.27 0.00 43.34 4.49
3225 3540 0.944386 AGTGGTGTCGAATTGCACAC 59.056 50.000 6.27 7.66 41.95 3.82
3226 3541 0.943673 CAGTGGTGTCGAATTGCACA 59.056 50.000 6.27 0.00 37.35 4.57
3227 3542 0.385974 GCAGTGGTGTCGAATTGCAC 60.386 55.000 0.00 0.00 35.07 4.57
3228 3543 1.514678 GGCAGTGGTGTCGAATTGCA 61.515 55.000 4.94 0.00 33.42 4.08
3229 3544 1.210155 GGCAGTGGTGTCGAATTGC 59.790 57.895 0.00 0.00 0.00 3.56
3236 3551 4.314440 TCCTGCGGCAGTGGTGTC 62.314 66.667 26.79 0.00 0.00 3.67
3237 3552 4.626081 GTCCTGCGGCAGTGGTGT 62.626 66.667 26.79 0.00 0.00 4.16
3248 3563 0.737715 AACGAGAGAATGCGTCCTGC 60.738 55.000 0.00 0.00 46.70 4.85
3249 3564 1.656095 GAAACGAGAGAATGCGTCCTG 59.344 52.381 0.00 0.00 40.23 3.86
3250 3565 1.404315 GGAAACGAGAGAATGCGTCCT 60.404 52.381 0.00 0.00 40.23 3.85
3251 3566 1.000145 GGAAACGAGAGAATGCGTCC 59.000 55.000 0.00 0.00 40.23 4.79
3252 3567 1.000145 GGGAAACGAGAGAATGCGTC 59.000 55.000 0.00 0.00 40.23 5.19
3253 3568 3.139029 GGGAAACGAGAGAATGCGT 57.861 52.632 0.00 0.00 43.39 5.24
3272 3587 1.730612 GTACCTAGTTGCAGCGGAAAC 59.269 52.381 0.00 0.00 32.20 2.78
3273 3588 1.670674 CGTACCTAGTTGCAGCGGAAA 60.671 52.381 1.59 0.00 0.00 3.13
3274 3589 0.108992 CGTACCTAGTTGCAGCGGAA 60.109 55.000 1.59 0.00 0.00 4.30
3275 3590 1.509463 CGTACCTAGTTGCAGCGGA 59.491 57.895 1.59 0.00 0.00 5.54
3276 3591 1.518572 CCGTACCTAGTTGCAGCGG 60.519 63.158 0.00 0.00 0.00 5.52
3277 3592 0.452987 TACCGTACCTAGTTGCAGCG 59.547 55.000 0.00 0.00 0.00 5.18
3278 3593 1.203052 TGTACCGTACCTAGTTGCAGC 59.797 52.381 6.23 0.00 0.00 5.25
3279 3594 2.229543 TGTGTACCGTACCTAGTTGCAG 59.770 50.000 6.23 0.00 0.00 4.41
3280 3595 2.237643 TGTGTACCGTACCTAGTTGCA 58.762 47.619 6.23 0.00 0.00 4.08
3281 3596 3.119388 TGATGTGTACCGTACCTAGTTGC 60.119 47.826 6.23 0.00 0.00 4.17
3282 3597 4.397103 TCTGATGTGTACCGTACCTAGTTG 59.603 45.833 6.23 0.00 0.00 3.16
3283 3598 4.592942 TCTGATGTGTACCGTACCTAGTT 58.407 43.478 6.23 0.00 0.00 2.24
3284 3599 4.226427 TCTGATGTGTACCGTACCTAGT 57.774 45.455 6.23 0.00 0.00 2.57
3285 3600 4.820173 TCATCTGATGTGTACCGTACCTAG 59.180 45.833 16.66 0.00 0.00 3.02
3286 3601 4.784177 TCATCTGATGTGTACCGTACCTA 58.216 43.478 16.66 0.00 0.00 3.08
3287 3602 3.628008 TCATCTGATGTGTACCGTACCT 58.372 45.455 16.66 0.00 0.00 3.08
3288 3603 3.795826 GCTCATCTGATGTGTACCGTACC 60.796 52.174 16.66 0.00 0.00 3.34
3289 3604 3.372954 GCTCATCTGATGTGTACCGTAC 58.627 50.000 16.66 1.40 0.00 3.67
3290 3605 2.361119 GGCTCATCTGATGTGTACCGTA 59.639 50.000 16.66 0.00 0.00 4.02
3291 3606 1.137086 GGCTCATCTGATGTGTACCGT 59.863 52.381 16.66 0.00 0.00 4.83
3292 3607 1.858091 GGCTCATCTGATGTGTACCG 58.142 55.000 16.66 2.57 0.00 4.02
3293 3608 1.539065 CCGGCTCATCTGATGTGTACC 60.539 57.143 16.66 12.41 0.00 3.34
3294 3609 1.858091 CCGGCTCATCTGATGTGTAC 58.142 55.000 16.66 10.73 0.00 2.90
3295 3610 0.104855 GCCGGCTCATCTGATGTGTA 59.895 55.000 22.15 0.00 0.00 2.90
3296 3611 1.153289 GCCGGCTCATCTGATGTGT 60.153 57.895 22.15 0.00 0.00 3.72
3297 3612 1.145598 AGCCGGCTCATCTGATGTG 59.854 57.895 27.08 15.15 0.00 3.21
3298 3613 1.145598 CAGCCGGCTCATCTGATGT 59.854 57.895 30.29 0.00 0.00 3.06
3299 3614 2.252346 GCAGCCGGCTCATCTGATG 61.252 63.158 30.29 15.40 40.25 3.07
3300 3615 2.053259 ATGCAGCCGGCTCATCTGAT 62.053 55.000 30.29 9.26 45.15 2.90
3301 3616 2.738938 ATGCAGCCGGCTCATCTGA 61.739 57.895 30.29 7.03 45.15 3.27
3302 3617 2.203167 ATGCAGCCGGCTCATCTG 60.203 61.111 30.29 17.95 45.15 2.90
3303 3618 2.053259 ATCATGCAGCCGGCTCATCT 62.053 55.000 30.29 17.71 45.15 2.90
3304 3619 1.575576 GATCATGCAGCCGGCTCATC 61.576 60.000 30.29 19.16 45.15 2.92
3305 3620 1.600076 GATCATGCAGCCGGCTCAT 60.600 57.895 30.29 27.58 45.15 2.90
3306 3621 2.203112 GATCATGCAGCCGGCTCA 60.203 61.111 30.29 26.61 45.15 4.26
3307 3622 2.976903 GGATCATGCAGCCGGCTC 60.977 66.667 30.29 21.68 45.15 4.70
3308 3623 4.575973 GGGATCATGCAGCCGGCT 62.576 66.667 27.08 27.08 45.15 5.52
3311 3626 4.923942 AGCGGGATCATGCAGCCG 62.924 66.667 10.56 6.36 0.00 5.52
3312 3627 2.517875 AAGCGGGATCATGCAGCC 60.518 61.111 10.56 0.00 0.00 4.85
3313 3628 2.890109 CGAAGCGGGATCATGCAGC 61.890 63.158 10.56 0.00 0.00 5.25
3314 3629 1.493950 GACGAAGCGGGATCATGCAG 61.494 60.000 10.56 4.66 0.00 4.41
3315 3630 1.521457 GACGAAGCGGGATCATGCA 60.521 57.895 10.56 0.00 0.00 3.96
3316 3631 2.589492 CGACGAAGCGGGATCATGC 61.589 63.158 0.00 0.00 0.00 4.06
3317 3632 3.617824 CGACGAAGCGGGATCATG 58.382 61.111 0.00 0.00 0.00 3.07
3348 3663 4.783621 TGATGCAGAGCGGCCCAC 62.784 66.667 0.00 0.00 0.00 4.61
3349 3664 4.478371 CTGATGCAGAGCGGCCCA 62.478 66.667 0.00 0.00 32.44 5.36
3356 3671 3.982316 TTGGCCGGCTGATGCAGAG 62.982 63.158 28.56 0.00 41.91 3.35
3357 3672 3.982316 CTTGGCCGGCTGATGCAGA 62.982 63.158 28.56 5.50 41.91 4.26
3358 3673 3.515286 CTTGGCCGGCTGATGCAG 61.515 66.667 28.56 9.39 41.91 4.41
3370 3685 0.036875 AGTACTCCAGTTGGCTTGGC 59.963 55.000 0.00 0.00 34.44 4.52
3371 3686 1.673033 CGAGTACTCCAGTTGGCTTGG 60.673 57.143 17.23 0.00 34.44 3.61
3372 3687 1.272490 TCGAGTACTCCAGTTGGCTTG 59.728 52.381 17.23 0.00 34.44 4.01
3373 3688 1.272769 GTCGAGTACTCCAGTTGGCTT 59.727 52.381 17.23 0.00 34.44 4.35
3374 3689 0.889306 GTCGAGTACTCCAGTTGGCT 59.111 55.000 17.23 0.00 34.44 4.75
3375 3690 0.601558 TGTCGAGTACTCCAGTTGGC 59.398 55.000 17.23 4.91 34.44 4.52
3376 3691 2.478031 CGATGTCGAGTACTCCAGTTGG 60.478 54.545 17.23 2.18 43.02 3.77
3377 3692 2.786854 CGATGTCGAGTACTCCAGTTG 58.213 52.381 17.23 2.91 43.02 3.16
3378 3693 1.132643 GCGATGTCGAGTACTCCAGTT 59.867 52.381 17.23 0.15 43.02 3.16
3379 3694 0.733729 GCGATGTCGAGTACTCCAGT 59.266 55.000 17.23 1.05 43.02 4.00
3380 3695 0.029567 GGCGATGTCGAGTACTCCAG 59.970 60.000 17.23 4.40 43.02 3.86
3381 3696 0.393944 AGGCGATGTCGAGTACTCCA 60.394 55.000 17.23 10.52 43.02 3.86
3382 3697 0.308376 GAGGCGATGTCGAGTACTCC 59.692 60.000 17.23 4.79 43.02 3.85
3383 3698 0.042013 CGAGGCGATGTCGAGTACTC 60.042 60.000 13.18 13.18 43.02 2.59
3384 3699 1.437772 CCGAGGCGATGTCGAGTACT 61.438 60.000 6.60 0.00 43.02 2.73
3385 3700 1.009900 CCGAGGCGATGTCGAGTAC 60.010 63.158 6.60 0.00 43.02 2.73
3386 3701 2.831366 GCCGAGGCGATGTCGAGTA 61.831 63.158 6.60 0.00 43.02 2.59
3387 3702 4.194720 GCCGAGGCGATGTCGAGT 62.195 66.667 6.60 0.00 43.02 4.18
3411 3726 4.143333 AGCCCGTCCGTTCCATCG 62.143 66.667 0.00 0.00 0.00 3.84
3412 3727 2.202892 GAGCCCGTCCGTTCCATC 60.203 66.667 0.00 0.00 0.00 3.51
3413 3728 3.782443 GGAGCCCGTCCGTTCCAT 61.782 66.667 0.00 0.00 34.84 3.41
3444 3759 4.910585 CATACCCCGTGCCGCCTC 62.911 72.222 0.00 0.00 0.00 4.70
3469 3784 2.094338 GGAAAGGAAGCAAGCAAGGATG 60.094 50.000 0.00 0.00 0.00 3.51
3470 3785 2.174360 GGAAAGGAAGCAAGCAAGGAT 58.826 47.619 0.00 0.00 0.00 3.24
3471 3786 1.145738 AGGAAAGGAAGCAAGCAAGGA 59.854 47.619 0.00 0.00 0.00 3.36
3472 3787 1.625511 AGGAAAGGAAGCAAGCAAGG 58.374 50.000 0.00 0.00 0.00 3.61
3473 3788 2.351157 CGAAGGAAAGGAAGCAAGCAAG 60.351 50.000 0.00 0.00 0.00 4.01
3474 3789 1.608590 CGAAGGAAAGGAAGCAAGCAA 59.391 47.619 0.00 0.00 0.00 3.91
3475 3790 1.238439 CGAAGGAAAGGAAGCAAGCA 58.762 50.000 0.00 0.00 0.00 3.91
3476 3791 0.109551 GCGAAGGAAAGGAAGCAAGC 60.110 55.000 0.00 0.00 0.00 4.01
3477 3792 0.523519 GGCGAAGGAAAGGAAGCAAG 59.476 55.000 0.00 0.00 0.00 4.01
3478 3793 0.893727 GGGCGAAGGAAAGGAAGCAA 60.894 55.000 0.00 0.00 0.00 3.91
3479 3794 1.303317 GGGCGAAGGAAAGGAAGCA 60.303 57.895 0.00 0.00 0.00 3.91
3480 3795 2.046864 GGGGCGAAGGAAAGGAAGC 61.047 63.158 0.00 0.00 0.00 3.86
3481 3796 1.745489 CGGGGCGAAGGAAAGGAAG 60.745 63.158 0.00 0.00 0.00 3.46
3482 3797 2.349755 CGGGGCGAAGGAAAGGAA 59.650 61.111 0.00 0.00 0.00 3.36
3483 3798 4.404098 GCGGGGCGAAGGAAAGGA 62.404 66.667 0.00 0.00 0.00 3.36
3508 3823 4.269523 TGGGCCAGTGACAGGTGC 62.270 66.667 0.00 0.00 0.00 5.01
3509 3824 2.281761 GTGGGCCAGTGACAGGTG 60.282 66.667 6.40 0.00 0.00 4.00
3510 3825 2.448542 AGTGGGCCAGTGACAGGT 60.449 61.111 14.44 0.00 0.00 4.00
3511 3826 2.033141 CAGTGGGCCAGTGACAGG 59.967 66.667 33.28 8.40 36.99 4.00
3512 3827 2.033141 CCAGTGGGCCAGTGACAG 59.967 66.667 37.11 20.08 36.99 3.51
3522 3837 1.134098 CCTAATACCAGTGCCAGTGGG 60.134 57.143 22.24 4.30 43.06 4.61
3523 3838 1.747206 GCCTAATACCAGTGCCAGTGG 60.747 57.143 17.16 17.16 44.34 4.00
3524 3839 1.065491 TGCCTAATACCAGTGCCAGTG 60.065 52.381 0.00 0.00 0.00 3.66
3525 3840 1.210478 CTGCCTAATACCAGTGCCAGT 59.790 52.381 0.00 0.00 0.00 4.00
3526 3841 1.959042 CTGCCTAATACCAGTGCCAG 58.041 55.000 0.00 0.00 0.00 4.85
3527 3842 0.107214 GCTGCCTAATACCAGTGCCA 60.107 55.000 0.00 0.00 0.00 4.92
3528 3843 0.819666 GGCTGCCTAATACCAGTGCC 60.820 60.000 12.43 0.00 0.00 5.01
3529 3844 0.181350 AGGCTGCCTAATACCAGTGC 59.819 55.000 21.98 0.00 28.47 4.40
3530 3845 2.684881 CAAAGGCTGCCTAATACCAGTG 59.315 50.000 23.69 6.41 31.13 3.66
3531 3846 2.945890 GCAAAGGCTGCCTAATACCAGT 60.946 50.000 23.69 0.00 46.13 4.00
3532 3847 1.678101 GCAAAGGCTGCCTAATACCAG 59.322 52.381 23.69 7.94 46.13 4.00
3533 3848 1.762708 GCAAAGGCTGCCTAATACCA 58.237 50.000 23.69 0.00 46.13 3.25
3546 3861 2.340328 GGTAACGGCCCAGCAAAGG 61.340 63.158 0.00 0.00 0.00 3.11
3547 3862 3.274067 GGTAACGGCCCAGCAAAG 58.726 61.111 0.00 0.00 0.00 2.77
3575 3890 1.247419 ATATCCCGCTCTCTCCGCTG 61.247 60.000 0.00 0.00 0.00 5.18
3576 3891 1.075836 ATATCCCGCTCTCTCCGCT 59.924 57.895 0.00 0.00 0.00 5.52
3577 3892 1.214062 CATATCCCGCTCTCTCCGC 59.786 63.158 0.00 0.00 0.00 5.54
3578 3893 1.468985 ATCATATCCCGCTCTCTCCG 58.531 55.000 0.00 0.00 0.00 4.63
3579 3894 4.211125 TCATATCATATCCCGCTCTCTCC 58.789 47.826 0.00 0.00 0.00 3.71
3580 3895 4.278170 CCTCATATCATATCCCGCTCTCTC 59.722 50.000 0.00 0.00 0.00 3.20
3581 3896 4.214310 CCTCATATCATATCCCGCTCTCT 58.786 47.826 0.00 0.00 0.00 3.10
3582 3897 3.243704 GCCTCATATCATATCCCGCTCTC 60.244 52.174 0.00 0.00 0.00 3.20
3583 3898 2.697751 GCCTCATATCATATCCCGCTCT 59.302 50.000 0.00 0.00 0.00 4.09
3584 3899 2.544694 CGCCTCATATCATATCCCGCTC 60.545 54.545 0.00 0.00 0.00 5.03
3585 3900 1.410517 CGCCTCATATCATATCCCGCT 59.589 52.381 0.00 0.00 0.00 5.52
3586 3901 1.539065 CCGCCTCATATCATATCCCGC 60.539 57.143 0.00 0.00 0.00 6.13
3587 3902 1.539065 GCCGCCTCATATCATATCCCG 60.539 57.143 0.00 0.00 0.00 5.14
3588 3903 1.765314 AGCCGCCTCATATCATATCCC 59.235 52.381 0.00 0.00 0.00 3.85
3589 3904 3.550437 AAGCCGCCTCATATCATATCC 57.450 47.619 0.00 0.00 0.00 2.59
3590 3905 4.437930 GCAAAAGCCGCCTCATATCATATC 60.438 45.833 0.00 0.00 0.00 1.63
3591 3906 3.441572 GCAAAAGCCGCCTCATATCATAT 59.558 43.478 0.00 0.00 0.00 1.78
3592 3907 2.813754 GCAAAAGCCGCCTCATATCATA 59.186 45.455 0.00 0.00 0.00 2.15
3593 3908 1.610522 GCAAAAGCCGCCTCATATCAT 59.389 47.619 0.00 0.00 0.00 2.45
3594 3909 1.024271 GCAAAAGCCGCCTCATATCA 58.976 50.000 0.00 0.00 0.00 2.15
3595 3910 0.040958 CGCAAAAGCCGCCTCATATC 60.041 55.000 0.00 0.00 0.00 1.63
3596 3911 0.463654 TCGCAAAAGCCGCCTCATAT 60.464 50.000 0.00 0.00 0.00 1.78
3597 3912 0.675208 TTCGCAAAAGCCGCCTCATA 60.675 50.000 0.00 0.00 0.00 2.15
3598 3913 1.926511 CTTCGCAAAAGCCGCCTCAT 61.927 55.000 0.00 0.00 0.00 2.90
3599 3914 2.593148 TTCGCAAAAGCCGCCTCA 60.593 55.556 0.00 0.00 0.00 3.86
3600 3915 2.176792 CTTCGCAAAAGCCGCCTC 59.823 61.111 0.00 0.00 0.00 4.70
3601 3916 4.043200 GCTTCGCAAAAGCCGCCT 62.043 61.111 9.18 0.00 37.30 5.52
3602 3917 4.341502 TGCTTCGCAAAAGCCGCC 62.342 61.111 15.91 0.00 42.36 6.13
3603 3918 2.802414 CTGCTTCGCAAAAGCCGC 60.802 61.111 15.91 0.00 42.36 6.53
3604 3919 2.126734 CCTGCTTCGCAAAAGCCG 60.127 61.111 15.91 10.69 42.36 5.52
3605 3920 1.372128 CACCTGCTTCGCAAAAGCC 60.372 57.895 15.91 2.12 42.36 4.35
3606 3921 1.372128 CCACCTGCTTCGCAAAAGC 60.372 57.895 12.66 12.66 38.41 3.51
3607 3922 0.667993 TTCCACCTGCTTCGCAAAAG 59.332 50.000 0.00 0.00 38.41 2.27
3608 3923 0.667993 CTTCCACCTGCTTCGCAAAA 59.332 50.000 0.00 0.00 38.41 2.44
3609 3924 1.795170 GCTTCCACCTGCTTCGCAAA 61.795 55.000 0.00 0.00 38.41 3.68
3610 3925 2.260869 GCTTCCACCTGCTTCGCAA 61.261 57.895 0.00 0.00 38.41 4.85
3611 3926 2.669569 GCTTCCACCTGCTTCGCA 60.670 61.111 0.00 0.00 36.92 5.10
3612 3927 1.968540 AAGCTTCCACCTGCTTCGC 60.969 57.895 0.00 0.00 45.09 4.70
3613 3928 4.386413 AAGCTTCCACCTGCTTCG 57.614 55.556 0.00 0.00 45.09 3.79
3639 3954 3.254014 CTTTGTTGTGCTCCCCGCG 62.254 63.158 0.00 0.00 43.27 6.46
3640 3955 2.644992 CTTTGTTGTGCTCCCCGC 59.355 61.111 0.00 0.00 39.77 6.13
3641 3956 2.644992 GCTTTGTTGTGCTCCCCG 59.355 61.111 0.00 0.00 0.00 5.73
3642 3957 1.244019 ATCGCTTTGTTGTGCTCCCC 61.244 55.000 0.00 0.00 0.00 4.81
3643 3958 0.598065 AATCGCTTTGTTGTGCTCCC 59.402 50.000 0.00 0.00 0.00 4.30
3644 3959 1.266718 TCAATCGCTTTGTTGTGCTCC 59.733 47.619 0.00 0.00 36.65 4.70
3645 3960 2.686558 TCAATCGCTTTGTTGTGCTC 57.313 45.000 0.00 0.00 36.65 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.