Multiple sequence alignment - TraesCS4D01G286800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G286800 chr4D 100.000 1823 0 0 644 2466 458993339 458995161 0.000000e+00 3367.0
1 TraesCS4D01G286800 chr4D 100.000 260 0 0 1 260 458992696 458992955 4.770000e-132 481.0
2 TraesCS4D01G286800 chr4D 92.857 56 2 1 138 191 460707182 460707237 2.030000e-11 80.5
3 TraesCS4D01G286800 chr4D 92.857 56 2 1 138 191 460708008 460708063 2.030000e-11 80.5
4 TraesCS4D01G286800 chr4B 91.272 1478 56 31 644 2106 573091204 573092623 0.000000e+00 1947.0
5 TraesCS4D01G286800 chr4B 91.844 282 21 2 2106 2385 187350200 187349919 2.300000e-105 392.0
6 TraesCS4D01G286800 chr4A 90.970 1484 61 28 644 2106 10165426 10163995 0.000000e+00 1930.0
7 TraesCS4D01G286800 chr4A 90.637 267 17 4 2 260 10165758 10165492 5.050000e-92 348.0
8 TraesCS4D01G286800 chr4A 77.059 170 27 11 24 190 693364180 693364020 1.210000e-13 87.9
9 TraesCS4D01G286800 chr5D 90.278 288 26 2 2107 2392 204513457 204513744 2.320000e-100 375.0
10 TraesCS4D01G286800 chr5D 90.459 283 25 2 2106 2386 124043596 124043314 3.000000e-99 372.0
11 TraesCS4D01G286800 chr5D 78.756 193 30 9 1 191 35527228 35527411 4.310000e-23 119.0
12 TraesCS4D01G286800 chr2A 91.007 278 23 2 2106 2381 387909360 387909083 8.330000e-100 374.0
13 TraesCS4D01G286800 chr2D 90.493 284 23 4 2106 2387 257942743 257943024 3.000000e-99 372.0
14 TraesCS4D01G286800 chr2D 88.889 54 6 0 138 191 89285681 89285734 1.580000e-07 67.6
15 TraesCS4D01G286800 chr6D 90.426 282 26 1 2106 2386 168873706 168873425 1.080000e-98 370.0
16 TraesCS4D01G286800 chr5B 89.384 292 29 2 2105 2394 244332049 244331758 1.390000e-97 366.0
17 TraesCS4D01G286800 chr7B 90.071 282 27 1 2103 2383 165758777 165759058 5.010000e-97 364.0
18 TraesCS4D01G286800 chr7B 95.455 44 2 0 150 193 661429206 661429163 1.220000e-08 71.3
19 TraesCS4D01G286800 chr1B 88.814 295 31 2 2100 2392 504650914 504650620 6.480000e-96 361.0
20 TraesCS4D01G286800 chr5A 89.076 119 13 0 75 193 130150437 130150319 5.490000e-32 148.0
21 TraesCS4D01G286800 chr7D 95.122 41 2 0 153 193 588153606 588153566 5.690000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G286800 chr4D 458992696 458995161 2465 False 1924 3367 100.0000 1 2466 2 chr4D.!!$F1 2465
1 TraesCS4D01G286800 chr4B 573091204 573092623 1419 False 1947 1947 91.2720 644 2106 1 chr4B.!!$F1 1462
2 TraesCS4D01G286800 chr4A 10163995 10165758 1763 True 1139 1930 90.8035 2 2106 2 chr4A.!!$R2 2104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 246 1.174712 GGCTGACTGGCACACATTGT 61.175 55.0 0.72 0.0 41.37 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 1699 0.257328 TGAGGGCCTCACAAACACAA 59.743 50.0 32.01 6.21 35.39 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.598278 TGTTTTGCTTAAGTTTCTTGTTCTCA 58.402 30.769 4.02 0.00 0.00 3.27
65 66 5.516984 AGGCTAGTGGTAGTTTAGCTAGAA 58.483 41.667 0.00 0.00 39.70 2.10
83 84 8.776061 AGCTAGAATTGTTAGAGTAGAAGGAT 57.224 34.615 0.00 0.00 0.00 3.24
97 98 7.507616 AGAGTAGAAGGATGGACTATAACTTGG 59.492 40.741 0.00 0.00 0.00 3.61
102 103 6.749036 AGGATGGACTATAACTTGGTTAGG 57.251 41.667 0.00 0.00 31.29 2.69
144 145 3.689347 TGGGAATTGTCCTTGATGACTG 58.311 45.455 0.00 0.00 44.28 3.51
237 246 1.174712 GGCTGACTGGCACACATTGT 61.175 55.000 0.72 0.00 41.37 2.71
757 767 2.358737 CCGTGGCCTCTTTTCGCT 60.359 61.111 3.32 0.00 0.00 4.93
764 774 4.127171 GTGGCCTCTTTTCGCTATCAATA 58.873 43.478 3.32 0.00 0.00 1.90
774 788 8.512138 TCTTTTCGCTATCAATATGACGATCTA 58.488 33.333 0.00 0.00 0.00 1.98
777 791 6.202226 TCGCTATCAATATGACGATCTATGC 58.798 40.000 0.00 0.00 0.00 3.14
853 867 3.111484 TCTCTCTGCTCTCCTCTCACTA 58.889 50.000 0.00 0.00 0.00 2.74
861 875 3.128589 GCTCTCCTCTCACTAAGACACTG 59.871 52.174 0.00 0.00 0.00 3.66
871 885 4.021981 TCACTAAGACACTGACCATCACAG 60.022 45.833 0.00 0.00 40.68 3.66
973 988 1.407258 AGCTTAGCTGTCTCCGATCAC 59.593 52.381 5.70 0.00 37.57 3.06
1057 1080 2.171003 TCAACGAGCTCATCTCCAAGA 58.829 47.619 15.40 0.00 38.62 3.02
1066 1089 0.250209 CATCTCCAAGATCCAGGCGG 60.250 60.000 0.00 0.00 31.32 6.13
1155 1181 1.205064 CTGCGAGTTGCTTGTTCCG 59.795 57.895 3.50 0.00 46.63 4.30
1255 1281 3.803340 AGTCCACCCTGAGAAGGATTAA 58.197 45.455 0.00 0.00 31.91 1.40
1257 1283 2.500098 TCCACCCTGAGAAGGATTAACG 59.500 50.000 0.00 0.00 0.00 3.18
1298 1324 4.093998 CACTGTTCCTGACATGAATGCTAC 59.906 45.833 0.00 0.00 37.69 3.58
1390 1416 1.950909 GAGGTTGACGATCTCTCCGAT 59.049 52.381 0.00 0.00 34.25 4.18
1549 1576 2.348888 GGCCGAAGAGGGAGACGAA 61.349 63.158 0.00 0.00 41.48 3.85
1661 1697 3.511131 CGTCGTCGTCTGTGTGTG 58.489 61.111 0.00 0.00 0.00 3.82
1662 1698 1.298116 CGTCGTCGTCTGTGTGTGT 60.298 57.895 0.00 0.00 0.00 3.72
1663 1699 0.864377 CGTCGTCGTCTGTGTGTGTT 60.864 55.000 0.00 0.00 0.00 3.32
1703 1739 5.145564 TCATTTAGCTTCCGGTATACTCCT 58.854 41.667 0.00 0.00 0.00 3.69
1704 1740 6.309357 TCATTTAGCTTCCGGTATACTCCTA 58.691 40.000 0.00 0.00 0.00 2.94
1705 1741 6.208204 TCATTTAGCTTCCGGTATACTCCTAC 59.792 42.308 0.00 0.00 0.00 3.18
1706 1742 3.880168 AGCTTCCGGTATACTCCTACT 57.120 47.619 0.00 0.00 0.00 2.57
1707 1743 3.753815 AGCTTCCGGTATACTCCTACTC 58.246 50.000 0.00 0.00 0.00 2.59
1708 1744 2.819019 GCTTCCGGTATACTCCTACTCC 59.181 54.545 0.00 0.00 0.00 3.85
1730 1766 3.913763 CACTGTGTTTCATTTATGCACCG 59.086 43.478 0.00 0.00 0.00 4.94
1821 1857 2.077627 ACGTGTGTGTTTGTGCTGTTA 58.922 42.857 0.00 0.00 0.00 2.41
1835 1871 2.771943 TGCTGTTATAGGCCTGTAGCTT 59.228 45.455 21.10 0.00 43.05 3.74
1836 1872 3.199946 TGCTGTTATAGGCCTGTAGCTTT 59.800 43.478 21.10 0.00 43.05 3.51
1837 1873 3.561725 GCTGTTATAGGCCTGTAGCTTTG 59.438 47.826 21.10 13.35 43.05 2.77
1838 1874 4.770795 CTGTTATAGGCCTGTAGCTTTGT 58.229 43.478 21.10 0.00 43.05 2.83
1839 1875 4.766375 TGTTATAGGCCTGTAGCTTTGTC 58.234 43.478 21.10 4.73 43.05 3.18
1840 1876 4.224147 TGTTATAGGCCTGTAGCTTTGTCA 59.776 41.667 21.10 0.63 43.05 3.58
1841 1877 2.762535 TAGGCCTGTAGCTTTGTCAC 57.237 50.000 17.99 0.00 43.05 3.67
1842 1878 1.059913 AGGCCTGTAGCTTTGTCACT 58.940 50.000 3.11 0.00 43.05 3.41
1843 1879 1.160137 GGCCTGTAGCTTTGTCACTG 58.840 55.000 0.00 0.00 43.05 3.66
1844 1880 1.543429 GGCCTGTAGCTTTGTCACTGT 60.543 52.381 0.00 0.00 43.05 3.55
1845 1881 2.222027 GCCTGTAGCTTTGTCACTGTT 58.778 47.619 0.00 0.00 38.99 3.16
1846 1882 2.618709 GCCTGTAGCTTTGTCACTGTTT 59.381 45.455 0.00 0.00 38.99 2.83
1847 1883 3.066760 GCCTGTAGCTTTGTCACTGTTTT 59.933 43.478 0.00 0.00 38.99 2.43
1848 1884 4.789802 GCCTGTAGCTTTGTCACTGTTTTC 60.790 45.833 0.00 0.00 38.99 2.29
1849 1885 4.576463 CCTGTAGCTTTGTCACTGTTTTCT 59.424 41.667 0.00 0.00 0.00 2.52
1850 1886 5.758296 CCTGTAGCTTTGTCACTGTTTTCTA 59.242 40.000 0.00 0.00 0.00 2.10
1851 1887 6.292919 CCTGTAGCTTTGTCACTGTTTTCTAC 60.293 42.308 0.00 0.00 0.00 2.59
1852 1888 6.346096 TGTAGCTTTGTCACTGTTTTCTACT 58.654 36.000 0.00 0.00 0.00 2.57
1853 1889 5.741388 AGCTTTGTCACTGTTTTCTACTG 57.259 39.130 0.00 0.00 0.00 2.74
1854 1890 5.428253 AGCTTTGTCACTGTTTTCTACTGA 58.572 37.500 0.00 0.00 0.00 3.41
1855 1891 6.058183 AGCTTTGTCACTGTTTTCTACTGAT 58.942 36.000 0.00 0.00 0.00 2.90
1856 1892 6.543831 AGCTTTGTCACTGTTTTCTACTGATT 59.456 34.615 0.00 0.00 0.00 2.57
1857 1893 7.715249 AGCTTTGTCACTGTTTTCTACTGATTA 59.285 33.333 0.00 0.00 0.00 1.75
1858 1894 8.012241 GCTTTGTCACTGTTTTCTACTGATTAG 58.988 37.037 0.00 0.00 0.00 1.73
1859 1895 8.958119 TTTGTCACTGTTTTCTACTGATTAGT 57.042 30.769 0.00 0.00 40.99 2.24
1860 1896 8.958119 TTGTCACTGTTTTCTACTGATTAGTT 57.042 30.769 0.00 0.00 38.36 2.24
1873 1909 8.103935 TCTACTGATTAGTTTCTCTCAGACTGA 58.896 37.037 4.78 4.78 38.74 3.41
1874 1910 7.716799 ACTGATTAGTTTCTCTCAGACTGAT 57.283 36.000 5.42 0.00 38.74 2.90
1875 1911 7.546358 ACTGATTAGTTTCTCTCAGACTGATG 58.454 38.462 5.42 2.57 38.74 3.07
1916 1958 8.033626 GCTATAGAGGTGTTGTTTTGTACTACT 58.966 37.037 3.21 0.00 34.20 2.57
2062 2112 6.908284 CGTCTTCTCTGCATAACTTACTACTC 59.092 42.308 0.00 0.00 0.00 2.59
2102 2152 2.017783 GCAATGTGCAAGTGCCACG 61.018 57.895 9.25 0.00 44.26 4.94
2106 2156 0.955428 ATGTGCAAGTGCCACGTAGG 60.955 55.000 0.00 0.00 41.18 3.18
2115 2165 4.813346 CCACGTAGGCCCTGTTTT 57.187 55.556 0.00 0.00 0.00 2.43
2116 2166 2.253513 CCACGTAGGCCCTGTTTTG 58.746 57.895 0.00 0.00 0.00 2.44
2117 2167 0.250553 CCACGTAGGCCCTGTTTTGA 60.251 55.000 0.00 0.00 0.00 2.69
2118 2168 1.613255 CCACGTAGGCCCTGTTTTGAT 60.613 52.381 0.00 0.00 0.00 2.57
2119 2169 2.159382 CACGTAGGCCCTGTTTTGATT 58.841 47.619 0.00 0.00 0.00 2.57
2120 2170 2.161609 CACGTAGGCCCTGTTTTGATTC 59.838 50.000 0.00 0.00 0.00 2.52
2121 2171 2.224670 ACGTAGGCCCTGTTTTGATTCA 60.225 45.455 0.00 0.00 0.00 2.57
2122 2172 3.016736 CGTAGGCCCTGTTTTGATTCAT 58.983 45.455 0.00 0.00 0.00 2.57
2123 2173 3.181497 CGTAGGCCCTGTTTTGATTCATG 60.181 47.826 0.00 0.00 0.00 3.07
2124 2174 2.181975 AGGCCCTGTTTTGATTCATGG 58.818 47.619 0.00 0.00 0.00 3.66
2125 2175 1.207811 GGCCCTGTTTTGATTCATGGG 59.792 52.381 0.00 0.00 36.41 4.00
2126 2176 1.901833 GCCCTGTTTTGATTCATGGGT 59.098 47.619 0.00 0.00 35.79 4.51
2127 2177 2.302733 GCCCTGTTTTGATTCATGGGTT 59.697 45.455 0.00 0.00 35.79 4.11
2128 2178 3.513515 GCCCTGTTTTGATTCATGGGTTA 59.486 43.478 0.00 0.00 35.79 2.85
2129 2179 4.381932 GCCCTGTTTTGATTCATGGGTTAG 60.382 45.833 0.00 0.00 35.79 2.34
2130 2180 5.016173 CCCTGTTTTGATTCATGGGTTAGA 58.984 41.667 0.00 0.00 0.00 2.10
2131 2181 5.126061 CCCTGTTTTGATTCATGGGTTAGAG 59.874 44.000 0.00 0.00 0.00 2.43
2132 2182 5.393461 CCTGTTTTGATTCATGGGTTAGAGC 60.393 44.000 0.00 0.00 0.00 4.09
2133 2183 5.324409 TGTTTTGATTCATGGGTTAGAGCT 58.676 37.500 0.00 0.00 0.00 4.09
2134 2184 6.480763 TGTTTTGATTCATGGGTTAGAGCTA 58.519 36.000 0.00 0.00 0.00 3.32
2135 2185 6.599244 TGTTTTGATTCATGGGTTAGAGCTAG 59.401 38.462 0.00 0.00 0.00 3.42
2136 2186 5.957771 TTGATTCATGGGTTAGAGCTAGT 57.042 39.130 0.00 0.00 0.00 2.57
2137 2187 5.957771 TGATTCATGGGTTAGAGCTAGTT 57.042 39.130 0.00 0.00 0.00 2.24
2138 2188 6.313519 TGATTCATGGGTTAGAGCTAGTTT 57.686 37.500 0.00 0.00 0.00 2.66
2139 2189 6.115446 TGATTCATGGGTTAGAGCTAGTTTG 58.885 40.000 0.00 0.00 0.00 2.93
2140 2190 5.755409 TTCATGGGTTAGAGCTAGTTTGA 57.245 39.130 0.00 0.00 0.00 2.69
2141 2191 5.344743 TCATGGGTTAGAGCTAGTTTGAG 57.655 43.478 0.00 0.00 0.00 3.02
2142 2192 3.611766 TGGGTTAGAGCTAGTTTGAGC 57.388 47.619 0.00 0.00 43.19 4.26
2152 2202 3.676093 GCTAGTTTGAGCTAGTTTGGGT 58.324 45.455 4.22 0.00 40.29 4.51
2153 2203 4.072839 GCTAGTTTGAGCTAGTTTGGGTT 58.927 43.478 4.22 0.00 40.29 4.11
2154 2204 4.154375 GCTAGTTTGAGCTAGTTTGGGTTC 59.846 45.833 4.22 0.00 40.29 3.62
2155 2205 4.164843 AGTTTGAGCTAGTTTGGGTTCA 57.835 40.909 0.00 0.00 0.00 3.18
2156 2206 4.532834 AGTTTGAGCTAGTTTGGGTTCAA 58.467 39.130 0.00 0.00 32.50 2.69
2157 2207 4.953579 AGTTTGAGCTAGTTTGGGTTCAAA 59.046 37.500 0.00 0.00 39.20 2.69
2158 2208 5.598417 AGTTTGAGCTAGTTTGGGTTCAAAT 59.402 36.000 7.85 0.00 43.73 2.32
2159 2209 6.775629 AGTTTGAGCTAGTTTGGGTTCAAATA 59.224 34.615 7.85 0.00 43.73 1.40
2160 2210 6.817765 TTGAGCTAGTTTGGGTTCAAATAG 57.182 37.500 0.00 0.00 43.73 1.73
2161 2211 4.700213 TGAGCTAGTTTGGGTTCAAATAGC 59.300 41.667 16.28 16.28 43.73 2.97
2162 2212 4.923415 AGCTAGTTTGGGTTCAAATAGCT 58.077 39.130 18.53 18.53 44.18 3.32
2163 2213 4.944317 AGCTAGTTTGGGTTCAAATAGCTC 59.056 41.667 18.53 1.71 44.77 4.09
2164 2214 4.944317 GCTAGTTTGGGTTCAAATAGCTCT 59.056 41.667 16.51 0.00 43.73 4.09
2165 2215 6.070194 AGCTAGTTTGGGTTCAAATAGCTCTA 60.070 38.462 18.53 7.42 44.77 2.43
2166 2216 6.598064 GCTAGTTTGGGTTCAAATAGCTCTAA 59.402 38.462 16.51 0.00 43.73 2.10
2167 2217 7.120726 GCTAGTTTGGGTTCAAATAGCTCTAAA 59.879 37.037 16.51 0.00 43.73 1.85
2168 2218 7.454260 AGTTTGGGTTCAAATAGCTCTAAAG 57.546 36.000 0.00 0.00 43.73 1.85
2169 2219 7.004691 AGTTTGGGTTCAAATAGCTCTAAAGT 58.995 34.615 0.00 0.00 43.73 2.66
2170 2220 7.175119 AGTTTGGGTTCAAATAGCTCTAAAGTC 59.825 37.037 0.00 0.00 43.73 3.01
2171 2221 6.374417 TGGGTTCAAATAGCTCTAAAGTCT 57.626 37.500 0.00 0.00 0.00 3.24
2172 2222 6.779860 TGGGTTCAAATAGCTCTAAAGTCTT 58.220 36.000 0.00 0.00 0.00 3.01
2173 2223 6.879458 TGGGTTCAAATAGCTCTAAAGTCTTC 59.121 38.462 0.00 0.00 0.00 2.87
2174 2224 6.879458 GGGTTCAAATAGCTCTAAAGTCTTCA 59.121 38.462 0.00 0.00 0.00 3.02
2175 2225 7.390718 GGGTTCAAATAGCTCTAAAGTCTTCAA 59.609 37.037 0.00 0.00 0.00 2.69
2176 2226 8.784043 GGTTCAAATAGCTCTAAAGTCTTCAAA 58.216 33.333 0.00 0.00 0.00 2.69
2177 2227 9.600646 GTTCAAATAGCTCTAAAGTCTTCAAAC 57.399 33.333 0.00 0.00 0.00 2.93
2178 2228 8.902540 TCAAATAGCTCTAAAGTCTTCAAACA 57.097 30.769 0.00 0.00 0.00 2.83
2179 2229 9.507329 TCAAATAGCTCTAAAGTCTTCAAACAT 57.493 29.630 0.00 0.00 0.00 2.71
2180 2230 9.552114 CAAATAGCTCTAAAGTCTTCAAACATG 57.448 33.333 0.00 0.00 0.00 3.21
2181 2231 9.507329 AAATAGCTCTAAAGTCTTCAAACATGA 57.493 29.630 0.00 0.00 0.00 3.07
2182 2232 8.715191 ATAGCTCTAAAGTCTTCAAACATGAG 57.285 34.615 0.00 0.00 0.00 2.90
2183 2233 6.763355 AGCTCTAAAGTCTTCAAACATGAGA 58.237 36.000 0.00 0.00 0.00 3.27
2184 2234 6.648725 AGCTCTAAAGTCTTCAAACATGAGAC 59.351 38.462 0.00 0.99 0.00 3.36
2185 2235 6.648725 GCTCTAAAGTCTTCAAACATGAGACT 59.351 38.462 7.93 7.93 41.03 3.24
2186 2236 7.815068 GCTCTAAAGTCTTCAAACATGAGACTA 59.185 37.037 12.86 0.69 38.70 2.59
2187 2237 9.352784 CTCTAAAGTCTTCAAACATGAGACTAG 57.647 37.037 12.86 8.85 38.70 2.57
2188 2238 8.861086 TCTAAAGTCTTCAAACATGAGACTAGT 58.139 33.333 12.86 0.00 38.70 2.57
2189 2239 9.482627 CTAAAGTCTTCAAACATGAGACTAGTT 57.517 33.333 12.86 8.37 38.70 2.24
2190 2240 8.738645 AAAGTCTTCAAACATGAGACTAGTTT 57.261 30.769 12.86 0.00 38.70 2.66
2191 2241 9.832445 AAAGTCTTCAAACATGAGACTAGTTTA 57.168 29.630 12.86 0.00 38.70 2.01
2192 2242 9.832445 AAGTCTTCAAACATGAGACTAGTTTAA 57.168 29.630 12.86 0.00 38.70 1.52
2193 2243 9.832445 AGTCTTCAAACATGAGACTAGTTTAAA 57.168 29.630 11.26 0.00 37.98 1.52
2194 2244 9.865484 GTCTTCAAACATGAGACTAGTTTAAAC 57.135 33.333 10.47 10.47 34.03 2.01
2195 2245 9.832445 TCTTCAAACATGAGACTAGTTTAAACT 57.168 29.630 23.58 23.58 42.91 2.66
2210 2260 7.683437 AGTTTAAACTAGTTGCATCTAACCC 57.317 36.000 19.26 0.00 37.52 4.11
2211 2261 7.228590 AGTTTAAACTAGTTGCATCTAACCCA 58.771 34.615 19.26 0.00 37.52 4.51
2212 2262 7.174426 AGTTTAAACTAGTTGCATCTAACCCAC 59.826 37.037 19.26 0.00 37.52 4.61
2213 2263 3.629142 ACTAGTTGCATCTAACCCACC 57.371 47.619 6.01 0.00 0.00 4.61
2214 2264 3.182152 ACTAGTTGCATCTAACCCACCT 58.818 45.455 6.01 0.00 0.00 4.00
2215 2265 4.359105 ACTAGTTGCATCTAACCCACCTA 58.641 43.478 6.01 0.00 0.00 3.08
2216 2266 4.781087 ACTAGTTGCATCTAACCCACCTAA 59.219 41.667 6.01 0.00 0.00 2.69
2217 2267 4.650972 AGTTGCATCTAACCCACCTAAA 57.349 40.909 0.00 0.00 0.00 1.85
2218 2268 4.993028 AGTTGCATCTAACCCACCTAAAA 58.007 39.130 0.00 0.00 0.00 1.52
2219 2269 5.390387 AGTTGCATCTAACCCACCTAAAAA 58.610 37.500 0.00 0.00 0.00 1.94
2239 2289 6.780457 AAAAACTATCCCATCCAAGATGTG 57.220 37.500 4.04 0.00 0.00 3.21
2240 2290 3.498774 ACTATCCCATCCAAGATGTGC 57.501 47.619 4.04 0.00 0.00 4.57
2241 2291 3.051581 ACTATCCCATCCAAGATGTGCT 58.948 45.455 4.04 0.00 0.00 4.40
2242 2292 4.234550 ACTATCCCATCCAAGATGTGCTA 58.765 43.478 4.04 0.00 0.00 3.49
2243 2293 4.660303 ACTATCCCATCCAAGATGTGCTAA 59.340 41.667 4.04 0.00 0.00 3.09
2244 2294 4.736611 ATCCCATCCAAGATGTGCTAAT 57.263 40.909 4.04 0.00 0.00 1.73
2245 2295 4.524802 TCCCATCCAAGATGTGCTAATT 57.475 40.909 4.04 0.00 0.00 1.40
2246 2296 4.209538 TCCCATCCAAGATGTGCTAATTG 58.790 43.478 4.04 0.00 0.00 2.32
2247 2297 3.319972 CCCATCCAAGATGTGCTAATTGG 59.680 47.826 4.04 0.00 42.93 3.16
2250 2300 3.282021 TCCAAGATGTGCTAATTGGAGC 58.718 45.455 1.47 0.00 44.75 4.70
2251 2301 3.054139 TCCAAGATGTGCTAATTGGAGCT 60.054 43.478 1.47 0.00 44.75 4.09
2252 2302 4.164030 TCCAAGATGTGCTAATTGGAGCTA 59.836 41.667 1.47 0.00 44.75 3.32
2253 2303 4.514441 CCAAGATGTGCTAATTGGAGCTAG 59.486 45.833 2.08 0.00 44.04 3.42
2254 2304 5.121811 CAAGATGTGCTAATTGGAGCTAGT 58.878 41.667 2.08 0.00 43.27 2.57
2255 2305 5.365021 AGATGTGCTAATTGGAGCTAGTT 57.635 39.130 2.08 0.00 43.27 2.24
2256 2306 5.363939 AGATGTGCTAATTGGAGCTAGTTC 58.636 41.667 0.00 0.00 43.27 3.01
2257 2307 4.826274 TGTGCTAATTGGAGCTAGTTCT 57.174 40.909 6.54 0.00 43.27 3.01
2258 2308 4.759782 TGTGCTAATTGGAGCTAGTTCTC 58.240 43.478 6.54 0.00 43.27 2.87
2268 2318 4.664150 GAGCTAGTTCTCCTAGTGCATT 57.336 45.455 0.00 0.00 44.37 3.56
2269 2319 5.017294 GAGCTAGTTCTCCTAGTGCATTT 57.983 43.478 0.00 0.00 44.37 2.32
2270 2320 6.150396 GAGCTAGTTCTCCTAGTGCATTTA 57.850 41.667 0.00 0.00 44.37 1.40
2271 2321 6.739331 AGCTAGTTCTCCTAGTGCATTTAT 57.261 37.500 0.00 0.00 44.37 1.40
2272 2322 7.130681 AGCTAGTTCTCCTAGTGCATTTATT 57.869 36.000 0.00 0.00 44.37 1.40
2273 2323 6.989169 AGCTAGTTCTCCTAGTGCATTTATTG 59.011 38.462 0.00 0.00 44.37 1.90
2274 2324 6.763610 GCTAGTTCTCCTAGTGCATTTATTGT 59.236 38.462 0.00 0.00 44.37 2.71
2275 2325 7.281100 GCTAGTTCTCCTAGTGCATTTATTGTT 59.719 37.037 0.00 0.00 44.37 2.83
2276 2326 9.817809 CTAGTTCTCCTAGTGCATTTATTGTTA 57.182 33.333 0.00 0.00 38.71 2.41
2278 2328 9.686683 AGTTCTCCTAGTGCATTTATTGTTAAT 57.313 29.630 0.00 0.00 0.00 1.40
2279 2329 9.937175 GTTCTCCTAGTGCATTTATTGTTAATC 57.063 33.333 0.00 0.00 0.00 1.75
2280 2330 9.905713 TTCTCCTAGTGCATTTATTGTTAATCT 57.094 29.630 0.00 0.00 0.00 2.40
2288 2338 9.855021 GTGCATTTATTGTTAATCTAACCTTGT 57.145 29.630 0.00 0.00 37.88 3.16
2294 2344 9.967451 TTATTGTTAATCTAACCTTGTCATCCA 57.033 29.630 0.00 0.00 37.88 3.41
2295 2345 8.877864 ATTGTTAATCTAACCTTGTCATCCAA 57.122 30.769 0.00 0.00 37.88 3.53
2296 2346 8.698973 TTGTTAATCTAACCTTGTCATCCAAA 57.301 30.769 0.00 0.00 37.88 3.28
2297 2347 8.106247 TGTTAATCTAACCTTGTCATCCAAAC 57.894 34.615 0.00 0.00 37.88 2.93
2298 2348 7.721842 TGTTAATCTAACCTTGTCATCCAAACA 59.278 33.333 0.00 0.00 37.88 2.83
2299 2349 6.575162 AATCTAACCTTGTCATCCAAACAC 57.425 37.500 0.00 0.00 31.20 3.32
2300 2350 4.394729 TCTAACCTTGTCATCCAAACACC 58.605 43.478 0.00 0.00 31.20 4.16
2301 2351 3.312736 AACCTTGTCATCCAAACACCT 57.687 42.857 0.00 0.00 31.20 4.00
2302 2352 2.863809 ACCTTGTCATCCAAACACCTC 58.136 47.619 0.00 0.00 31.20 3.85
2303 2353 2.443255 ACCTTGTCATCCAAACACCTCT 59.557 45.455 0.00 0.00 31.20 3.69
2304 2354 3.117512 ACCTTGTCATCCAAACACCTCTT 60.118 43.478 0.00 0.00 31.20 2.85
2305 2355 3.891366 CCTTGTCATCCAAACACCTCTTT 59.109 43.478 0.00 0.00 31.20 2.52
2306 2356 4.261741 CCTTGTCATCCAAACACCTCTTTG 60.262 45.833 0.00 0.00 31.20 2.77
2307 2357 4.163441 TGTCATCCAAACACCTCTTTGA 57.837 40.909 0.00 0.00 33.61 2.69
2308 2358 3.882888 TGTCATCCAAACACCTCTTTGAC 59.117 43.478 0.00 0.00 33.61 3.18
2309 2359 4.137543 GTCATCCAAACACCTCTTTGACT 58.862 43.478 0.00 0.00 33.61 3.41
2310 2360 5.163248 TGTCATCCAAACACCTCTTTGACTA 60.163 40.000 0.00 0.00 33.61 2.59
2311 2361 5.409826 GTCATCCAAACACCTCTTTGACTAG 59.590 44.000 0.00 0.00 33.61 2.57
2312 2362 5.306937 TCATCCAAACACCTCTTTGACTAGA 59.693 40.000 0.00 0.00 33.61 2.43
2313 2363 5.215252 TCCAAACACCTCTTTGACTAGAG 57.785 43.478 0.00 0.00 41.10 2.43
2314 2364 4.654262 TCCAAACACCTCTTTGACTAGAGT 59.346 41.667 0.00 0.00 40.04 3.24
2315 2365 5.130477 TCCAAACACCTCTTTGACTAGAGTT 59.870 40.000 0.00 0.00 40.04 3.01
2316 2366 6.325545 TCCAAACACCTCTTTGACTAGAGTTA 59.674 38.462 0.00 0.00 40.04 2.24
2317 2367 6.647067 CCAAACACCTCTTTGACTAGAGTTAG 59.353 42.308 0.00 0.00 40.04 2.34
2318 2368 6.980416 AACACCTCTTTGACTAGAGTTAGT 57.020 37.500 0.00 0.00 42.79 2.24
2319 2369 6.980416 ACACCTCTTTGACTAGAGTTAGTT 57.020 37.500 0.00 0.00 40.21 2.24
2320 2370 6.983984 ACACCTCTTTGACTAGAGTTAGTTC 58.016 40.000 0.00 0.00 40.21 3.01
2321 2371 6.550108 ACACCTCTTTGACTAGAGTTAGTTCA 59.450 38.462 0.00 0.00 40.21 3.18
2322 2372 7.069578 ACACCTCTTTGACTAGAGTTAGTTCAA 59.930 37.037 0.00 0.00 40.21 2.69
2323 2373 7.596995 CACCTCTTTGACTAGAGTTAGTTCAAG 59.403 40.741 0.00 0.00 40.21 3.02
2324 2374 7.093992 CCTCTTTGACTAGAGTTAGTTCAAGG 58.906 42.308 0.00 0.00 40.21 3.61
2325 2375 7.256012 CCTCTTTGACTAGAGTTAGTTCAAGGT 60.256 40.741 0.00 0.00 40.21 3.50
2326 2376 8.019656 TCTTTGACTAGAGTTAGTTCAAGGTT 57.980 34.615 0.00 0.00 40.21 3.50
2327 2377 9.139734 TCTTTGACTAGAGTTAGTTCAAGGTTA 57.860 33.333 0.00 0.00 40.21 2.85
2328 2378 9.413048 CTTTGACTAGAGTTAGTTCAAGGTTAG 57.587 37.037 0.00 0.00 40.21 2.34
2329 2379 8.474710 TTGACTAGAGTTAGTTCAAGGTTAGT 57.525 34.615 0.00 0.00 40.21 2.24
2330 2380 8.108551 TGACTAGAGTTAGTTCAAGGTTAGTC 57.891 38.462 0.00 0.00 40.21 2.59
2331 2381 7.722728 TGACTAGAGTTAGTTCAAGGTTAGTCA 59.277 37.037 0.00 6.46 40.21 3.41
2332 2382 8.653036 ACTAGAGTTAGTTCAAGGTTAGTCAT 57.347 34.615 0.00 0.00 36.75 3.06
2333 2383 8.524487 ACTAGAGTTAGTTCAAGGTTAGTCATG 58.476 37.037 0.00 0.00 36.75 3.07
2334 2384 7.540474 AGAGTTAGTTCAAGGTTAGTCATGA 57.460 36.000 0.00 0.00 0.00 3.07
2335 2385 7.607250 AGAGTTAGTTCAAGGTTAGTCATGAG 58.393 38.462 0.00 0.00 0.00 2.90
2336 2386 6.166982 AGTTAGTTCAAGGTTAGTCATGAGC 58.833 40.000 0.00 0.00 0.00 4.26
2337 2387 4.899352 AGTTCAAGGTTAGTCATGAGCT 57.101 40.909 0.00 0.00 0.00 4.09
2338 2388 7.178628 AGTTAGTTCAAGGTTAGTCATGAGCTA 59.821 37.037 0.00 0.00 35.43 3.32
2339 2389 6.360370 AGTTCAAGGTTAGTCATGAGCTAA 57.640 37.500 0.00 4.74 32.57 3.09
2340 2390 6.769512 AGTTCAAGGTTAGTCATGAGCTAAA 58.230 36.000 15.06 0.00 32.57 1.85
2341 2391 7.224297 AGTTCAAGGTTAGTCATGAGCTAAAA 58.776 34.615 15.06 6.97 32.57 1.52
2342 2392 7.719633 AGTTCAAGGTTAGTCATGAGCTAAAAA 59.280 33.333 15.06 6.64 32.57 1.94
2343 2393 7.435068 TCAAGGTTAGTCATGAGCTAAAAAC 57.565 36.000 15.06 8.86 31.22 2.43
2344 2394 7.224297 TCAAGGTTAGTCATGAGCTAAAAACT 58.776 34.615 15.06 12.02 31.22 2.66
2345 2395 8.372459 TCAAGGTTAGTCATGAGCTAAAAACTA 58.628 33.333 15.06 2.13 31.22 2.24
2346 2396 8.999431 CAAGGTTAGTCATGAGCTAAAAACTAA 58.001 33.333 15.06 7.12 31.22 2.24
2347 2397 8.549338 AGGTTAGTCATGAGCTAAAAACTAAC 57.451 34.615 20.87 20.87 44.01 2.34
2348 2398 8.376270 AGGTTAGTCATGAGCTAAAAACTAACT 58.624 33.333 24.57 15.18 44.11 2.24
2349 2399 8.657729 GGTTAGTCATGAGCTAAAAACTAACTC 58.342 37.037 24.57 16.85 44.11 3.01
2350 2400 9.425577 GTTAGTCATGAGCTAAAAACTAACTCT 57.574 33.333 21.33 1.25 42.61 3.24
2353 2403 9.425577 AGTCATGAGCTAAAAACTAACTCTAAC 57.574 33.333 0.00 0.00 0.00 2.34
2354 2404 9.204570 GTCATGAGCTAAAAACTAACTCTAACA 57.795 33.333 0.00 0.00 0.00 2.41
2355 2405 9.944376 TCATGAGCTAAAAACTAACTCTAACAT 57.056 29.630 0.00 0.00 0.00 2.71
2360 2410 9.589111 AGCTAAAAACTAACTCTAACATCTAGC 57.411 33.333 0.00 0.00 0.00 3.42
2361 2411 9.589111 GCTAAAAACTAACTCTAACATCTAGCT 57.411 33.333 0.00 0.00 0.00 3.32
2376 2426 8.998277 AACATCTAGCTAAGTTAGAGTATCCA 57.002 34.615 14.27 0.00 33.66 3.41
2377 2427 8.998277 ACATCTAGCTAAGTTAGAGTATCCAA 57.002 34.615 14.27 0.00 33.66 3.53
2378 2428 9.422681 ACATCTAGCTAAGTTAGAGTATCCAAA 57.577 33.333 14.27 0.00 33.66 3.28
2379 2429 9.685828 CATCTAGCTAAGTTAGAGTATCCAAAC 57.314 37.037 14.27 0.00 33.66 2.93
2380 2430 8.818622 TCTAGCTAAGTTAGAGTATCCAAACA 57.181 34.615 14.27 0.00 34.84 2.83
2381 2431 8.904834 TCTAGCTAAGTTAGAGTATCCAAACAG 58.095 37.037 14.27 0.00 34.84 3.16
2382 2432 6.879400 AGCTAAGTTAGAGTATCCAAACAGG 58.121 40.000 14.27 0.00 34.84 4.00
2396 2446 6.588719 TCCAAACAGGACCATAGAAAAATG 57.411 37.500 0.00 0.00 43.07 2.32
2397 2447 6.310941 TCCAAACAGGACCATAGAAAAATGA 58.689 36.000 0.00 0.00 43.07 2.57
2398 2448 6.780031 TCCAAACAGGACCATAGAAAAATGAA 59.220 34.615 0.00 0.00 43.07 2.57
2399 2449 7.039784 TCCAAACAGGACCATAGAAAAATGAAG 60.040 37.037 0.00 0.00 43.07 3.02
2400 2450 7.039784 CCAAACAGGACCATAGAAAAATGAAGA 60.040 37.037 0.00 0.00 41.22 2.87
2401 2451 8.359642 CAAACAGGACCATAGAAAAATGAAGAA 58.640 33.333 0.00 0.00 0.00 2.52
2402 2452 7.454260 ACAGGACCATAGAAAAATGAAGAAC 57.546 36.000 0.00 0.00 0.00 3.01
2403 2453 6.434340 ACAGGACCATAGAAAAATGAAGAACC 59.566 38.462 0.00 0.00 0.00 3.62
2404 2454 6.660949 CAGGACCATAGAAAAATGAAGAACCT 59.339 38.462 0.00 0.00 0.00 3.50
2405 2455 6.887002 AGGACCATAGAAAAATGAAGAACCTC 59.113 38.462 0.00 0.00 0.00 3.85
2406 2456 6.887002 GGACCATAGAAAAATGAAGAACCTCT 59.113 38.462 0.00 0.00 0.00 3.69
2407 2457 7.066404 GGACCATAGAAAAATGAAGAACCTCTC 59.934 40.741 0.00 0.00 0.00 3.20
2408 2458 6.595716 ACCATAGAAAAATGAAGAACCTCTCG 59.404 38.462 0.00 0.00 0.00 4.04
2409 2459 6.595716 CCATAGAAAAATGAAGAACCTCTCGT 59.404 38.462 0.00 0.00 0.00 4.18
2410 2460 5.931441 AGAAAAATGAAGAACCTCTCGTG 57.069 39.130 0.00 0.00 0.00 4.35
2411 2461 4.214332 AGAAAAATGAAGAACCTCTCGTGC 59.786 41.667 0.00 0.00 0.00 5.34
2412 2462 1.714794 AATGAAGAACCTCTCGTGCG 58.285 50.000 0.00 0.00 0.00 5.34
2413 2463 0.603569 ATGAAGAACCTCTCGTGCGT 59.396 50.000 0.00 0.00 0.00 5.24
2414 2464 0.318699 TGAAGAACCTCTCGTGCGTG 60.319 55.000 0.00 0.00 0.00 5.34
2415 2465 1.618640 GAAGAACCTCTCGTGCGTGC 61.619 60.000 0.00 0.00 0.00 5.34
2416 2466 2.049063 GAACCTCTCGTGCGTGCT 60.049 61.111 0.00 0.00 0.00 4.40
2417 2467 1.211969 GAACCTCTCGTGCGTGCTA 59.788 57.895 0.00 0.00 0.00 3.49
2418 2468 0.798771 GAACCTCTCGTGCGTGCTAG 60.799 60.000 0.00 0.00 0.00 3.42
2419 2469 2.580867 CCTCTCGTGCGTGCTAGC 60.581 66.667 8.10 8.10 37.71 3.42
2420 2470 2.946597 CTCTCGTGCGTGCTAGCG 60.947 66.667 10.77 0.00 40.67 4.26
2421 2471 4.476410 TCTCGTGCGTGCTAGCGG 62.476 66.667 10.77 5.69 40.67 5.52
2429 2479 4.487412 GTGCTAGCGGGCGTACGT 62.487 66.667 17.90 0.00 35.98 3.57
2430 2480 4.485834 TGCTAGCGGGCGTACGTG 62.486 66.667 17.90 8.45 35.98 4.49
2440 2490 2.992313 CGTACGTGCGCATGTACC 59.008 61.111 44.06 32.87 46.04 3.34
2441 2491 2.841533 CGTACGTGCGCATGTACCG 61.842 63.158 44.06 37.11 46.04 4.02
2442 2492 1.802715 GTACGTGCGCATGTACCGT 60.803 57.895 42.80 33.92 44.15 4.83
2443 2493 1.514657 TACGTGCGCATGTACCGTC 60.515 57.895 32.99 9.25 0.00 4.79
2444 2494 3.897502 CGTGCGCATGTACCGTCG 61.898 66.667 21.57 9.94 0.00 5.12
2445 2495 2.505337 GTGCGCATGTACCGTCGA 60.505 61.111 15.91 0.00 0.00 4.20
2446 2496 2.089936 GTGCGCATGTACCGTCGAA 61.090 57.895 15.91 0.00 0.00 3.71
2447 2497 1.373121 TGCGCATGTACCGTCGAAA 60.373 52.632 5.66 0.00 0.00 3.46
2448 2498 0.738063 TGCGCATGTACCGTCGAAAT 60.738 50.000 5.66 0.00 0.00 2.17
2449 2499 1.202203 GCGCATGTACCGTCGAAATA 58.798 50.000 0.30 0.00 0.00 1.40
2450 2500 1.189446 GCGCATGTACCGTCGAAATAG 59.811 52.381 0.30 0.00 0.00 1.73
2451 2501 2.456989 CGCATGTACCGTCGAAATAGT 58.543 47.619 0.00 0.00 0.00 2.12
2452 2502 2.466571 CGCATGTACCGTCGAAATAGTC 59.533 50.000 0.00 0.00 0.00 2.59
2462 2512 2.787723 CGAAATAGTCGGTGTGCTTG 57.212 50.000 0.00 0.00 46.45 4.01
2463 2513 2.066262 CGAAATAGTCGGTGTGCTTGT 58.934 47.619 0.00 0.00 46.45 3.16
2464 2514 3.247442 CGAAATAGTCGGTGTGCTTGTA 58.753 45.455 0.00 0.00 46.45 2.41
2465 2515 3.676172 CGAAATAGTCGGTGTGCTTGTAA 59.324 43.478 0.00 0.00 46.45 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.713713 AAACTTAAGCAAAACAAGTTTTCCTAA 57.286 25.926 7.89 5.86 45.50 2.69
5 6 9.051679 ACAAGAAACTTAAGCAAAACAAGTTTT 57.948 25.926 11.64 5.16 46.87 2.43
14 15 7.624360 TCTGAGAACAAGAAACTTAAGCAAA 57.376 32.000 1.29 0.00 0.00 3.68
17 18 9.818796 CTTATTCTGAGAACAAGAAACTTAAGC 57.181 33.333 7.42 0.00 0.00 3.09
20 21 8.157476 AGCCTTATTCTGAGAACAAGAAACTTA 58.843 33.333 14.39 0.00 0.00 2.24
22 23 6.538263 AGCCTTATTCTGAGAACAAGAAACT 58.462 36.000 14.39 6.24 0.00 2.66
23 24 6.809630 AGCCTTATTCTGAGAACAAGAAAC 57.190 37.500 14.39 4.19 0.00 2.78
29 30 4.777896 ACCACTAGCCTTATTCTGAGAACA 59.222 41.667 0.00 0.00 0.00 3.18
36 37 6.612049 AGCTAAACTACCACTAGCCTTATTCT 59.388 38.462 0.00 0.00 39.09 2.40
83 84 4.718276 GGACCCTAACCAAGTTATAGTCCA 59.282 45.833 20.44 0.00 42.80 4.02
91 92 0.689055 GACCGGACCCTAACCAAGTT 59.311 55.000 9.46 0.00 0.00 2.66
97 98 0.464452 CATCAGGACCGGACCCTAAC 59.536 60.000 19.83 0.00 31.64 2.34
102 103 0.613777 AACTTCATCAGGACCGGACC 59.386 55.000 15.76 15.76 0.00 4.46
677 687 2.679996 AAAATGACCAGGCCCGGC 60.680 61.111 4.38 0.00 0.00 6.13
757 767 5.070446 GGGGGCATAGATCGTCATATTGATA 59.930 44.000 0.00 0.00 0.00 2.15
764 774 0.832135 ACGGGGGCATAGATCGTCAT 60.832 55.000 0.00 0.00 0.00 3.06
774 788 1.497309 TTGAAGGAGAACGGGGGCAT 61.497 55.000 0.00 0.00 0.00 4.40
777 791 2.919228 CTATTTGAAGGAGAACGGGGG 58.081 52.381 0.00 0.00 0.00 5.40
861 875 1.139989 CGTGTGACACTGTGATGGTC 58.860 55.000 15.86 1.84 31.34 4.02
983 998 3.480470 GACATCTCCCTCTCTCTCTCTG 58.520 54.545 0.00 0.00 0.00 3.35
1032 1055 2.622942 GGAGATGAGCTCGTTGATCTCT 59.377 50.000 27.72 14.36 44.91 3.10
1066 1089 1.227973 GGGATGATTCCGGGAGCAC 60.228 63.158 0.69 0.00 43.63 4.40
1206 1232 1.226379 CGCCATGACGAAATGCACC 60.226 57.895 0.00 0.00 34.06 5.01
1238 1264 2.093447 AGCGTTAATCCTTCTCAGGGTG 60.093 50.000 0.00 0.00 41.25 4.61
1255 1281 5.049405 CAGTGAGGAAGAAAAATAACAGCGT 60.049 40.000 0.00 0.00 0.00 5.07
1257 1283 6.319141 ACAGTGAGGAAGAAAAATAACAGC 57.681 37.500 0.00 0.00 0.00 4.40
1298 1324 4.068282 CGACTGCACAGCACAGCG 62.068 66.667 0.00 0.00 38.79 5.18
1375 1401 1.072489 AGCCTATCGGAGAGATCGTCA 59.928 52.381 0.23 0.00 43.63 4.35
1549 1576 3.505386 TCTCTTCTCTTGTCTTGCCTCT 58.495 45.455 0.00 0.00 0.00 3.69
1658 1694 1.203523 GGCCTCACAAACACAAACACA 59.796 47.619 0.00 0.00 0.00 3.72
1659 1695 1.470805 GGGCCTCACAAACACAAACAC 60.471 52.381 0.84 0.00 0.00 3.32
1660 1696 0.820871 GGGCCTCACAAACACAAACA 59.179 50.000 0.84 0.00 0.00 2.83
1661 1697 1.067060 GAGGGCCTCACAAACACAAAC 59.933 52.381 28.55 0.00 0.00 2.93
1662 1698 1.341482 TGAGGGCCTCACAAACACAAA 60.341 47.619 32.01 5.39 35.39 2.83
1663 1699 0.257328 TGAGGGCCTCACAAACACAA 59.743 50.000 32.01 6.21 35.39 3.33
1703 1739 6.000840 TGCATAAATGAAACACAGTGGAGTA 58.999 36.000 5.31 0.00 0.00 2.59
1704 1740 4.826733 TGCATAAATGAAACACAGTGGAGT 59.173 37.500 5.31 0.00 0.00 3.85
1705 1741 5.156355 GTGCATAAATGAAACACAGTGGAG 58.844 41.667 5.31 0.00 0.00 3.86
1706 1742 4.022416 GGTGCATAAATGAAACACAGTGGA 60.022 41.667 5.31 0.00 32.89 4.02
1707 1743 4.236935 GGTGCATAAATGAAACACAGTGG 58.763 43.478 5.31 0.00 32.89 4.00
1708 1744 3.913763 CGGTGCATAAATGAAACACAGTG 59.086 43.478 0.00 0.00 32.89 3.66
1768 1804 8.784994 GCTAGTAGTAATACACTCAGCTAATCA 58.215 37.037 2.81 0.00 38.80 2.57
1821 1857 2.840651 AGTGACAAAGCTACAGGCCTAT 59.159 45.455 3.98 0.00 43.05 2.57
1835 1871 8.958119 AACTAATCAGTAGAAAACAGTGACAA 57.042 30.769 0.00 0.00 33.48 3.18
1836 1872 8.958119 AAACTAATCAGTAGAAAACAGTGACA 57.042 30.769 0.00 0.00 33.48 3.58
1837 1873 9.262358 AGAAACTAATCAGTAGAAAACAGTGAC 57.738 33.333 0.00 0.00 33.48 3.67
1838 1874 9.477484 GAGAAACTAATCAGTAGAAAACAGTGA 57.523 33.333 0.00 0.00 33.48 3.41
1839 1875 9.482627 AGAGAAACTAATCAGTAGAAAACAGTG 57.517 33.333 0.00 0.00 33.48 3.66
1840 1876 9.699703 GAGAGAAACTAATCAGTAGAAAACAGT 57.300 33.333 0.00 0.00 33.48 3.55
1841 1877 9.698309 TGAGAGAAACTAATCAGTAGAAAACAG 57.302 33.333 0.00 0.00 33.48 3.16
1842 1878 9.698309 CTGAGAGAAACTAATCAGTAGAAAACA 57.302 33.333 0.00 0.00 35.52 2.83
1843 1879 9.915629 TCTGAGAGAAACTAATCAGTAGAAAAC 57.084 33.333 0.00 0.00 40.07 2.43
1844 1880 9.915629 GTCTGAGAGAAACTAATCAGTAGAAAA 57.084 33.333 0.00 0.00 40.07 2.29
1845 1881 9.303116 AGTCTGAGAGAAACTAATCAGTAGAAA 57.697 33.333 0.00 0.00 40.07 2.52
1846 1882 8.735315 CAGTCTGAGAGAAACTAATCAGTAGAA 58.265 37.037 0.00 0.00 40.07 2.10
1847 1883 8.103935 TCAGTCTGAGAGAAACTAATCAGTAGA 58.896 37.037 0.00 0.00 40.07 2.59
1848 1884 8.275015 TCAGTCTGAGAGAAACTAATCAGTAG 57.725 38.462 0.00 0.00 40.07 2.57
1849 1885 8.681806 CATCAGTCTGAGAGAAACTAATCAGTA 58.318 37.037 8.82 0.00 40.07 2.74
1850 1886 7.395772 TCATCAGTCTGAGAGAAACTAATCAGT 59.604 37.037 8.82 0.00 40.07 3.41
1851 1887 7.770201 TCATCAGTCTGAGAGAAACTAATCAG 58.230 38.462 8.82 0.00 40.42 2.90
1852 1888 7.613411 TCTCATCAGTCTGAGAGAAACTAATCA 59.387 37.037 20.58 4.63 45.13 2.57
1853 1889 7.995289 TCTCATCAGTCTGAGAGAAACTAATC 58.005 38.462 20.58 0.00 45.13 1.75
1854 1890 7.953005 TCTCATCAGTCTGAGAGAAACTAAT 57.047 36.000 20.58 0.00 45.13 1.73
1873 1909 6.671605 TCTATAGCTAGAGGATGCATCTCAT 58.328 40.000 25.28 12.38 32.29 2.90
1874 1910 6.072199 TCTATAGCTAGAGGATGCATCTCA 57.928 41.667 25.28 8.04 33.92 3.27
1875 1911 6.624352 CTCTATAGCTAGAGGATGCATCTC 57.376 45.833 25.28 19.21 44.95 2.75
1916 1958 9.967346 CAAAGCTAGCAATTGATAGTACTAGTA 57.033 33.333 26.73 0.00 36.48 1.82
1917 1959 8.478877 ACAAAGCTAGCAATTGATAGTACTAGT 58.521 33.333 29.14 17.62 36.48 2.57
1918 1960 8.879342 ACAAAGCTAGCAATTGATAGTACTAG 57.121 34.615 29.14 17.83 36.48 2.57
1929 1971 3.160679 ACAGGGACAAAGCTAGCAATT 57.839 42.857 18.83 8.78 0.00 2.32
2062 2112 3.587923 TCCAAATAACTTGACCGTACGG 58.412 45.455 32.22 32.22 37.17 4.02
2102 2152 3.131046 CCATGAATCAAAACAGGGCCTAC 59.869 47.826 5.28 0.00 31.55 3.18
2106 2156 1.901833 ACCCATGAATCAAAACAGGGC 59.098 47.619 0.00 0.00 38.39 5.19
2107 2157 5.016173 TCTAACCCATGAATCAAAACAGGG 58.984 41.667 0.00 0.00 40.66 4.45
2108 2158 5.393461 GCTCTAACCCATGAATCAAAACAGG 60.393 44.000 0.00 0.00 0.00 4.00
2109 2159 5.416952 AGCTCTAACCCATGAATCAAAACAG 59.583 40.000 0.00 0.00 0.00 3.16
2110 2160 5.324409 AGCTCTAACCCATGAATCAAAACA 58.676 37.500 0.00 0.00 0.00 2.83
2111 2161 5.904362 AGCTCTAACCCATGAATCAAAAC 57.096 39.130 0.00 0.00 0.00 2.43
2112 2162 6.721318 ACTAGCTCTAACCCATGAATCAAAA 58.279 36.000 0.00 0.00 0.00 2.44
2113 2163 6.313519 ACTAGCTCTAACCCATGAATCAAA 57.686 37.500 0.00 0.00 0.00 2.69
2114 2164 5.957771 ACTAGCTCTAACCCATGAATCAA 57.042 39.130 0.00 0.00 0.00 2.57
2115 2165 5.957771 AACTAGCTCTAACCCATGAATCA 57.042 39.130 0.00 0.00 0.00 2.57
2116 2166 6.349300 TCAAACTAGCTCTAACCCATGAATC 58.651 40.000 0.00 0.00 0.00 2.52
2117 2167 6.313519 TCAAACTAGCTCTAACCCATGAAT 57.686 37.500 0.00 0.00 0.00 2.57
2118 2168 5.734720 CTCAAACTAGCTCTAACCCATGAA 58.265 41.667 0.00 0.00 0.00 2.57
2119 2169 4.383118 GCTCAAACTAGCTCTAACCCATGA 60.383 45.833 0.00 0.00 39.50 3.07
2120 2170 3.873952 GCTCAAACTAGCTCTAACCCATG 59.126 47.826 0.00 0.00 39.50 3.66
2121 2171 4.143986 GCTCAAACTAGCTCTAACCCAT 57.856 45.455 0.00 0.00 39.50 4.00
2122 2172 3.611766 GCTCAAACTAGCTCTAACCCA 57.388 47.619 0.00 0.00 39.50 4.51
2131 2181 3.676093 ACCCAAACTAGCTCAAACTAGC 58.324 45.455 0.00 0.00 42.91 3.42
2132 2182 5.305585 TGAACCCAAACTAGCTCAAACTAG 58.694 41.667 0.00 0.00 44.38 2.57
2133 2183 5.298989 TGAACCCAAACTAGCTCAAACTA 57.701 39.130 0.00 0.00 0.00 2.24
2134 2184 4.164843 TGAACCCAAACTAGCTCAAACT 57.835 40.909 0.00 0.00 0.00 2.66
2135 2185 4.911514 TTGAACCCAAACTAGCTCAAAC 57.088 40.909 0.00 0.00 0.00 2.93
2136 2186 6.294508 GCTATTTGAACCCAAACTAGCTCAAA 60.295 38.462 16.11 0.00 44.16 2.69
2137 2187 5.183140 GCTATTTGAACCCAAACTAGCTCAA 59.817 40.000 16.11 0.00 44.16 3.02
2138 2188 4.700213 GCTATTTGAACCCAAACTAGCTCA 59.300 41.667 16.11 0.00 44.16 4.26
2139 2189 4.944317 AGCTATTTGAACCCAAACTAGCTC 59.056 41.667 18.15 4.65 44.60 4.09
2140 2190 4.923415 AGCTATTTGAACCCAAACTAGCT 58.077 39.130 18.15 18.15 44.16 3.32
2141 2191 4.944317 AGAGCTATTTGAACCCAAACTAGC 59.056 41.667 15.87 15.87 44.16 3.42
2142 2192 8.561738 TTTAGAGCTATTTGAACCCAAACTAG 57.438 34.615 0.00 0.00 44.16 2.57
2143 2193 8.161425 ACTTTAGAGCTATTTGAACCCAAACTA 58.839 33.333 0.00 0.00 44.16 2.24
2144 2194 7.004691 ACTTTAGAGCTATTTGAACCCAAACT 58.995 34.615 0.00 0.00 44.16 2.66
2145 2195 7.175119 AGACTTTAGAGCTATTTGAACCCAAAC 59.825 37.037 0.00 0.00 44.16 2.93
2146 2196 7.231467 AGACTTTAGAGCTATTTGAACCCAAA 58.769 34.615 0.00 0.00 45.28 3.28
2147 2197 6.779860 AGACTTTAGAGCTATTTGAACCCAA 58.220 36.000 0.00 0.00 0.00 4.12
2148 2198 6.374417 AGACTTTAGAGCTATTTGAACCCA 57.626 37.500 0.00 0.00 0.00 4.51
2149 2199 6.879458 TGAAGACTTTAGAGCTATTTGAACCC 59.121 38.462 0.00 0.00 0.00 4.11
2150 2200 7.907214 TGAAGACTTTAGAGCTATTTGAACC 57.093 36.000 0.00 0.00 0.00 3.62
2151 2201 9.600646 GTTTGAAGACTTTAGAGCTATTTGAAC 57.399 33.333 0.00 0.00 0.00 3.18
2152 2202 9.337396 TGTTTGAAGACTTTAGAGCTATTTGAA 57.663 29.630 0.00 0.00 0.00 2.69
2153 2203 8.902540 TGTTTGAAGACTTTAGAGCTATTTGA 57.097 30.769 0.00 0.00 0.00 2.69
2154 2204 9.552114 CATGTTTGAAGACTTTAGAGCTATTTG 57.448 33.333 0.00 0.00 0.00 2.32
2155 2205 9.507329 TCATGTTTGAAGACTTTAGAGCTATTT 57.493 29.630 0.00 0.00 0.00 1.40
2156 2206 9.160496 CTCATGTTTGAAGACTTTAGAGCTATT 57.840 33.333 0.00 0.00 0.00 1.73
2157 2207 8.535335 TCTCATGTTTGAAGACTTTAGAGCTAT 58.465 33.333 0.00 0.00 0.00 2.97
2158 2208 7.815068 GTCTCATGTTTGAAGACTTTAGAGCTA 59.185 37.037 4.64 0.00 32.18 3.32
2159 2209 6.648725 GTCTCATGTTTGAAGACTTTAGAGCT 59.351 38.462 4.64 0.00 32.18 4.09
2160 2210 6.648725 AGTCTCATGTTTGAAGACTTTAGAGC 59.351 38.462 7.93 0.00 37.20 4.09
2161 2211 9.352784 CTAGTCTCATGTTTGAAGACTTTAGAG 57.647 37.037 16.54 6.88 39.24 2.43
2162 2212 8.861086 ACTAGTCTCATGTTTGAAGACTTTAGA 58.139 33.333 16.54 1.79 39.24 2.10
2163 2213 9.482627 AACTAGTCTCATGTTTGAAGACTTTAG 57.517 33.333 16.54 12.20 39.24 1.85
2164 2214 9.832445 AAACTAGTCTCATGTTTGAAGACTTTA 57.168 29.630 16.54 2.67 39.24 1.85
2165 2215 8.738645 AAACTAGTCTCATGTTTGAAGACTTT 57.261 30.769 16.54 6.13 39.24 2.66
2166 2216 9.832445 TTAAACTAGTCTCATGTTTGAAGACTT 57.168 29.630 16.54 4.62 39.24 3.01
2167 2217 9.832445 TTTAAACTAGTCTCATGTTTGAAGACT 57.168 29.630 15.84 15.84 40.40 3.24
2168 2218 9.865484 GTTTAAACTAGTCTCATGTTTGAAGAC 57.135 33.333 11.18 3.83 35.77 3.01
2169 2219 9.832445 AGTTTAAACTAGTCTCATGTTTGAAGA 57.168 29.630 19.26 0.00 37.52 2.87
2185 2235 8.377034 TGGGTTAGATGCAACTAGTTTAAACTA 58.623 33.333 23.31 23.31 40.37 2.24
2186 2236 7.174426 GTGGGTTAGATGCAACTAGTTTAAACT 59.826 37.037 23.58 23.58 42.91 2.66
2187 2237 7.303261 GTGGGTTAGATGCAACTAGTTTAAAC 58.697 38.462 10.47 10.47 0.00 2.01
2188 2238 6.431852 GGTGGGTTAGATGCAACTAGTTTAAA 59.568 38.462 5.07 0.00 0.00 1.52
2189 2239 5.941647 GGTGGGTTAGATGCAACTAGTTTAA 59.058 40.000 5.07 0.00 0.00 1.52
2190 2240 5.249852 AGGTGGGTTAGATGCAACTAGTTTA 59.750 40.000 5.07 0.00 0.00 2.01
2191 2241 4.042934 AGGTGGGTTAGATGCAACTAGTTT 59.957 41.667 5.07 0.00 0.00 2.66
2192 2242 3.587506 AGGTGGGTTAGATGCAACTAGTT 59.412 43.478 1.12 1.12 0.00 2.24
2193 2243 3.182152 AGGTGGGTTAGATGCAACTAGT 58.818 45.455 3.75 0.00 0.00 2.57
2194 2244 3.914426 AGGTGGGTTAGATGCAACTAG 57.086 47.619 3.75 0.00 0.00 2.57
2195 2245 5.765576 TTTAGGTGGGTTAGATGCAACTA 57.234 39.130 0.00 0.00 0.00 2.24
2196 2246 4.650972 TTTAGGTGGGTTAGATGCAACT 57.349 40.909 0.86 0.86 0.00 3.16
2197 2247 5.715434 TTTTTAGGTGGGTTAGATGCAAC 57.285 39.130 0.00 0.00 0.00 4.17
2216 2266 5.127682 GCACATCTTGGATGGGATAGTTTTT 59.872 40.000 13.18 0.00 0.00 1.94
2217 2267 4.646492 GCACATCTTGGATGGGATAGTTTT 59.354 41.667 13.18 0.00 0.00 2.43
2218 2268 4.079558 AGCACATCTTGGATGGGATAGTTT 60.080 41.667 13.18 0.00 0.00 2.66
2219 2269 3.461085 AGCACATCTTGGATGGGATAGTT 59.539 43.478 13.18 0.00 0.00 2.24
2220 2270 3.051581 AGCACATCTTGGATGGGATAGT 58.948 45.455 13.18 0.00 0.00 2.12
2221 2271 3.784511 AGCACATCTTGGATGGGATAG 57.215 47.619 13.18 0.00 0.00 2.08
2222 2272 5.848286 ATTAGCACATCTTGGATGGGATA 57.152 39.130 13.18 8.56 0.00 2.59
2223 2273 4.736611 ATTAGCACATCTTGGATGGGAT 57.263 40.909 13.18 9.53 0.00 3.85
2224 2274 4.209538 CAATTAGCACATCTTGGATGGGA 58.790 43.478 13.18 0.00 0.00 4.37
2225 2275 3.319972 CCAATTAGCACATCTTGGATGGG 59.680 47.826 11.46 8.64 40.48 4.00
2226 2276 4.209538 TCCAATTAGCACATCTTGGATGG 58.790 43.478 11.46 0.00 41.60 3.51
2227 2277 4.261489 GCTCCAATTAGCACATCTTGGATG 60.261 45.833 3.53 6.04 44.48 3.51
2228 2278 3.887716 GCTCCAATTAGCACATCTTGGAT 59.112 43.478 3.53 0.00 44.48 3.41
2229 2279 3.054139 AGCTCCAATTAGCACATCTTGGA 60.054 43.478 3.15 3.13 45.30 3.53
2230 2280 3.285484 AGCTCCAATTAGCACATCTTGG 58.715 45.455 3.15 0.00 45.30 3.61
2231 2281 5.121811 ACTAGCTCCAATTAGCACATCTTG 58.878 41.667 3.15 0.00 45.30 3.02
2232 2282 5.365021 ACTAGCTCCAATTAGCACATCTT 57.635 39.130 3.15 0.00 45.30 2.40
2233 2283 5.130145 AGAACTAGCTCCAATTAGCACATCT 59.870 40.000 3.15 0.00 45.30 2.90
2234 2284 5.363939 AGAACTAGCTCCAATTAGCACATC 58.636 41.667 3.15 0.00 45.30 3.06
2235 2285 5.363939 GAGAACTAGCTCCAATTAGCACAT 58.636 41.667 3.15 0.00 45.30 3.21
2236 2286 4.759782 GAGAACTAGCTCCAATTAGCACA 58.240 43.478 3.15 0.00 45.30 4.57
2252 2302 9.686683 ATTAACAATAAATGCACTAGGAGAACT 57.313 29.630 0.00 0.00 0.00 3.01
2253 2303 9.937175 GATTAACAATAAATGCACTAGGAGAAC 57.063 33.333 0.00 0.00 0.00 3.01
2254 2304 9.905713 AGATTAACAATAAATGCACTAGGAGAA 57.094 29.630 0.00 0.00 0.00 2.87
2262 2312 9.855021 ACAAGGTTAGATTAACAATAAATGCAC 57.145 29.630 0.00 0.00 40.39 4.57
2268 2318 9.967451 TGGATGACAAGGTTAGATTAACAATAA 57.033 29.630 1.88 0.00 40.39 1.40
2269 2319 9.967451 TTGGATGACAAGGTTAGATTAACAATA 57.033 29.630 1.88 0.00 35.82 1.90
2270 2320 8.877864 TTGGATGACAAGGTTAGATTAACAAT 57.122 30.769 1.88 0.00 35.82 2.71
2271 2321 8.573035 GTTTGGATGACAAGGTTAGATTAACAA 58.427 33.333 1.88 0.00 40.82 2.83
2272 2322 7.721842 TGTTTGGATGACAAGGTTAGATTAACA 59.278 33.333 1.88 0.00 40.82 2.41
2273 2323 8.021396 GTGTTTGGATGACAAGGTTAGATTAAC 58.979 37.037 0.00 0.00 40.82 2.01
2274 2324 7.175990 GGTGTTTGGATGACAAGGTTAGATTAA 59.824 37.037 0.00 0.00 40.82 1.40
2275 2325 6.657541 GGTGTTTGGATGACAAGGTTAGATTA 59.342 38.462 0.00 0.00 40.82 1.75
2276 2326 5.476945 GGTGTTTGGATGACAAGGTTAGATT 59.523 40.000 0.00 0.00 40.82 2.40
2277 2327 5.010282 GGTGTTTGGATGACAAGGTTAGAT 58.990 41.667 0.00 0.00 40.82 1.98
2278 2328 4.104102 AGGTGTTTGGATGACAAGGTTAGA 59.896 41.667 0.00 0.00 40.82 2.10
2279 2329 4.398319 AGGTGTTTGGATGACAAGGTTAG 58.602 43.478 0.00 0.00 40.82 2.34
2280 2330 4.104102 AGAGGTGTTTGGATGACAAGGTTA 59.896 41.667 0.00 0.00 40.82 2.85
2281 2331 3.117512 AGAGGTGTTTGGATGACAAGGTT 60.118 43.478 0.00 0.00 40.82 3.50
2282 2332 2.443255 AGAGGTGTTTGGATGACAAGGT 59.557 45.455 0.00 0.00 40.82 3.50
2283 2333 3.146104 AGAGGTGTTTGGATGACAAGG 57.854 47.619 0.00 0.00 40.82 3.61
2284 2334 4.580167 TCAAAGAGGTGTTTGGATGACAAG 59.420 41.667 0.24 0.00 40.82 3.16
2285 2335 4.338118 GTCAAAGAGGTGTTTGGATGACAA 59.662 41.667 0.24 0.00 37.89 3.18
2286 2336 3.882888 GTCAAAGAGGTGTTTGGATGACA 59.117 43.478 0.24 0.00 37.89 3.58
2287 2337 4.137543 AGTCAAAGAGGTGTTTGGATGAC 58.862 43.478 0.24 0.00 37.89 3.06
2288 2338 4.437682 AGTCAAAGAGGTGTTTGGATGA 57.562 40.909 0.24 0.00 37.89 2.92
2289 2339 5.551233 TCTAGTCAAAGAGGTGTTTGGATG 58.449 41.667 0.24 0.00 37.89 3.51
2290 2340 5.308237 ACTCTAGTCAAAGAGGTGTTTGGAT 59.692 40.000 5.90 0.00 46.11 3.41
2291 2341 4.654262 ACTCTAGTCAAAGAGGTGTTTGGA 59.346 41.667 5.90 0.00 46.11 3.53
2292 2342 4.962155 ACTCTAGTCAAAGAGGTGTTTGG 58.038 43.478 5.90 0.00 46.11 3.28
2293 2343 7.210873 ACTAACTCTAGTCAAAGAGGTGTTTG 58.789 38.462 1.71 0.00 43.46 2.93
2294 2344 7.362802 ACTAACTCTAGTCAAAGAGGTGTTT 57.637 36.000 1.71 0.00 43.46 2.83
2295 2345 6.980416 ACTAACTCTAGTCAAAGAGGTGTT 57.020 37.500 1.71 0.00 43.46 3.32
2296 2346 6.550108 TGAACTAACTCTAGTCAAAGAGGTGT 59.450 38.462 1.71 0.00 43.46 4.16
2297 2347 6.982852 TGAACTAACTCTAGTCAAAGAGGTG 58.017 40.000 1.71 0.00 43.46 4.00
2298 2348 7.256012 CCTTGAACTAACTCTAGTCAAAGAGGT 60.256 40.741 5.90 1.45 46.11 3.85
2299 2349 7.093992 CCTTGAACTAACTCTAGTCAAAGAGG 58.906 42.308 5.90 0.00 46.11 3.69
2301 2351 7.598759 ACCTTGAACTAACTCTAGTCAAAGA 57.401 36.000 0.00 0.00 37.39 2.52
2302 2352 9.413048 CTAACCTTGAACTAACTCTAGTCAAAG 57.587 37.037 0.00 0.00 37.39 2.77
2303 2353 8.921205 ACTAACCTTGAACTAACTCTAGTCAAA 58.079 33.333 0.00 0.00 37.39 2.69
2304 2354 8.474710 ACTAACCTTGAACTAACTCTAGTCAA 57.525 34.615 0.00 0.00 37.39 3.18
2305 2355 7.722728 TGACTAACCTTGAACTAACTCTAGTCA 59.277 37.037 0.00 0.00 40.01 3.41
2306 2356 8.108551 TGACTAACCTTGAACTAACTCTAGTC 57.891 38.462 0.00 0.00 37.39 2.59
2307 2357 8.524487 CATGACTAACCTTGAACTAACTCTAGT 58.476 37.037 0.00 0.00 40.25 2.57
2308 2358 8.740906 TCATGACTAACCTTGAACTAACTCTAG 58.259 37.037 0.00 0.00 0.00 2.43
2309 2359 8.645814 TCATGACTAACCTTGAACTAACTCTA 57.354 34.615 0.00 0.00 0.00 2.43
2310 2360 7.540474 TCATGACTAACCTTGAACTAACTCT 57.460 36.000 0.00 0.00 0.00 3.24
2311 2361 6.311690 GCTCATGACTAACCTTGAACTAACTC 59.688 42.308 0.00 0.00 0.00 3.01
2312 2362 6.014156 AGCTCATGACTAACCTTGAACTAACT 60.014 38.462 0.00 0.00 0.00 2.24
2313 2363 6.166982 AGCTCATGACTAACCTTGAACTAAC 58.833 40.000 0.00 0.00 0.00 2.34
2314 2364 6.360370 AGCTCATGACTAACCTTGAACTAA 57.640 37.500 0.00 0.00 0.00 2.24
2315 2365 7.476540 TTAGCTCATGACTAACCTTGAACTA 57.523 36.000 11.41 0.00 0.00 2.24
2316 2366 4.899352 AGCTCATGACTAACCTTGAACT 57.101 40.909 0.00 0.00 0.00 3.01
2317 2367 7.435068 TTTTAGCTCATGACTAACCTTGAAC 57.565 36.000 13.79 0.00 29.52 3.18
2318 2368 7.719633 AGTTTTTAGCTCATGACTAACCTTGAA 59.280 33.333 13.79 6.31 29.52 2.69
2319 2369 7.224297 AGTTTTTAGCTCATGACTAACCTTGA 58.776 34.615 13.79 1.94 29.52 3.02
2320 2370 7.440523 AGTTTTTAGCTCATGACTAACCTTG 57.559 36.000 13.79 0.00 29.52 3.61
2321 2371 9.000486 GTTAGTTTTTAGCTCATGACTAACCTT 58.000 33.333 20.98 6.94 41.34 3.50
2322 2372 8.376270 AGTTAGTTTTTAGCTCATGACTAACCT 58.624 33.333 24.47 16.04 45.08 3.50
2323 2373 8.549338 AGTTAGTTTTTAGCTCATGACTAACC 57.451 34.615 24.47 14.85 45.08 2.85
2324 2374 9.425577 AGAGTTAGTTTTTAGCTCATGACTAAC 57.574 33.333 22.57 22.57 44.67 2.34
2327 2377 9.425577 GTTAGAGTTAGTTTTTAGCTCATGACT 57.574 33.333 0.00 0.00 0.00 3.41
2328 2378 9.204570 TGTTAGAGTTAGTTTTTAGCTCATGAC 57.795 33.333 0.00 0.00 0.00 3.06
2329 2379 9.944376 ATGTTAGAGTTAGTTTTTAGCTCATGA 57.056 29.630 0.00 0.00 0.00 3.07
2334 2384 9.589111 GCTAGATGTTAGAGTTAGTTTTTAGCT 57.411 33.333 0.00 0.00 0.00 3.32
2335 2385 9.589111 AGCTAGATGTTAGAGTTAGTTTTTAGC 57.411 33.333 0.00 0.00 0.00 3.09
2351 2401 8.998277 TGGATACTCTAACTTAGCTAGATGTT 57.002 34.615 11.63 11.63 37.61 2.71
2352 2402 8.998277 TTGGATACTCTAACTTAGCTAGATGT 57.002 34.615 0.00 0.00 37.61 3.06
2353 2403 9.685828 GTTTGGATACTCTAACTTAGCTAGATG 57.314 37.037 0.00 0.00 37.61 2.90
2354 2404 9.422681 TGTTTGGATACTCTAACTTAGCTAGAT 57.577 33.333 0.00 0.00 37.61 1.98
2355 2405 8.818622 TGTTTGGATACTCTAACTTAGCTAGA 57.181 34.615 0.00 0.00 37.61 2.43
2356 2406 8.138712 CCTGTTTGGATACTCTAACTTAGCTAG 58.861 40.741 0.00 0.00 38.35 3.42
2357 2407 7.837689 TCCTGTTTGGATACTCTAACTTAGCTA 59.162 37.037 0.00 0.00 40.56 3.32
2358 2408 6.668283 TCCTGTTTGGATACTCTAACTTAGCT 59.332 38.462 0.00 0.00 40.56 3.32
2359 2409 6.875076 TCCTGTTTGGATACTCTAACTTAGC 58.125 40.000 0.00 0.00 40.56 3.09
2373 2423 6.310941 TCATTTTTCTATGGTCCTGTTTGGA 58.689 36.000 0.00 0.00 43.86 3.53
2374 2424 6.588719 TCATTTTTCTATGGTCCTGTTTGG 57.411 37.500 0.00 0.00 37.10 3.28
2375 2425 7.885297 TCTTCATTTTTCTATGGTCCTGTTTG 58.115 34.615 0.00 0.00 0.00 2.93
2376 2426 8.360390 GTTCTTCATTTTTCTATGGTCCTGTTT 58.640 33.333 0.00 0.00 0.00 2.83
2377 2427 7.039714 GGTTCTTCATTTTTCTATGGTCCTGTT 60.040 37.037 0.00 0.00 0.00 3.16
2378 2428 6.434340 GGTTCTTCATTTTTCTATGGTCCTGT 59.566 38.462 0.00 0.00 0.00 4.00
2379 2429 6.660949 AGGTTCTTCATTTTTCTATGGTCCTG 59.339 38.462 0.00 0.00 0.00 3.86
2380 2430 6.794534 AGGTTCTTCATTTTTCTATGGTCCT 58.205 36.000 0.00 0.00 0.00 3.85
2381 2431 6.887002 AGAGGTTCTTCATTTTTCTATGGTCC 59.113 38.462 0.00 0.00 0.00 4.46
2382 2432 7.201565 CGAGAGGTTCTTCATTTTTCTATGGTC 60.202 40.741 0.00 0.00 0.00 4.02
2383 2433 6.595716 CGAGAGGTTCTTCATTTTTCTATGGT 59.404 38.462 0.00 0.00 0.00 3.55
2384 2434 6.595716 ACGAGAGGTTCTTCATTTTTCTATGG 59.404 38.462 0.00 0.00 0.00 2.74
2385 2435 7.459486 CACGAGAGGTTCTTCATTTTTCTATG 58.541 38.462 0.00 0.00 0.00 2.23
2386 2436 6.092807 GCACGAGAGGTTCTTCATTTTTCTAT 59.907 38.462 0.00 0.00 0.00 1.98
2387 2437 5.408604 GCACGAGAGGTTCTTCATTTTTCTA 59.591 40.000 0.00 0.00 0.00 2.10
2388 2438 4.214332 GCACGAGAGGTTCTTCATTTTTCT 59.786 41.667 0.00 0.00 0.00 2.52
2389 2439 4.467735 GCACGAGAGGTTCTTCATTTTTC 58.532 43.478 0.00 0.00 0.00 2.29
2390 2440 3.058914 CGCACGAGAGGTTCTTCATTTTT 60.059 43.478 0.00 0.00 0.00 1.94
2391 2441 2.480419 CGCACGAGAGGTTCTTCATTTT 59.520 45.455 0.00 0.00 0.00 1.82
2392 2442 2.069273 CGCACGAGAGGTTCTTCATTT 58.931 47.619 0.00 0.00 0.00 2.32
2393 2443 1.000955 ACGCACGAGAGGTTCTTCATT 59.999 47.619 0.00 0.00 0.00 2.57
2394 2444 0.603569 ACGCACGAGAGGTTCTTCAT 59.396 50.000 0.00 0.00 0.00 2.57
2395 2445 0.318699 CACGCACGAGAGGTTCTTCA 60.319 55.000 0.00 0.00 0.00 3.02
2396 2446 1.618640 GCACGCACGAGAGGTTCTTC 61.619 60.000 0.00 0.00 0.00 2.87
2397 2447 1.664965 GCACGCACGAGAGGTTCTT 60.665 57.895 0.00 0.00 0.00 2.52
2398 2448 1.241990 TAGCACGCACGAGAGGTTCT 61.242 55.000 0.00 0.00 0.00 3.01
2399 2449 0.798771 CTAGCACGCACGAGAGGTTC 60.799 60.000 0.00 0.00 0.00 3.62
2400 2450 1.213013 CTAGCACGCACGAGAGGTT 59.787 57.895 0.00 0.00 0.00 3.50
2401 2451 2.878429 CTAGCACGCACGAGAGGT 59.122 61.111 0.00 0.00 0.00 3.85
2402 2452 2.580867 GCTAGCACGCACGAGAGG 60.581 66.667 10.63 0.00 0.00 3.69
2403 2453 2.946597 CGCTAGCACGCACGAGAG 60.947 66.667 16.45 0.00 0.00 3.20
2404 2454 4.476410 CCGCTAGCACGCACGAGA 62.476 66.667 16.45 0.00 0.00 4.04
2412 2462 4.487412 ACGTACGCCCGCTAGCAC 62.487 66.667 16.72 2.88 0.00 4.40
2413 2463 4.485834 CACGTACGCCCGCTAGCA 62.486 66.667 16.72 0.00 0.00 3.49
2423 2473 2.841533 CGGTACATGCGCACGTACG 61.842 63.158 32.54 25.12 39.10 3.67
2424 2474 1.736249 GACGGTACATGCGCACGTAC 61.736 60.000 32.40 32.40 37.96 3.67
2425 2475 1.514657 GACGGTACATGCGCACGTA 60.515 57.895 20.77 17.41 37.96 3.57
2426 2476 2.807895 GACGGTACATGCGCACGT 60.808 61.111 20.85 20.85 40.85 4.49
2427 2477 3.897502 CGACGGTACATGCGCACG 61.898 66.667 14.90 14.83 0.00 5.34
2428 2478 1.619526 TTTCGACGGTACATGCGCAC 61.620 55.000 14.90 0.00 0.00 5.34
2429 2479 0.738063 ATTTCGACGGTACATGCGCA 60.738 50.000 14.96 14.96 0.00 6.09
2430 2480 1.189446 CTATTTCGACGGTACATGCGC 59.811 52.381 0.00 0.00 0.00 6.09
2431 2481 2.456989 ACTATTTCGACGGTACATGCG 58.543 47.619 0.00 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.