>input_sequence_79357
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--------------------------------------------------------------ATGTCGAGCCGCCGTGGC
CGGATCACCGACGAAGAGATCAACGAGCTCATCTCCAAGATCCAGGCGGTGCTCCCGGAATCATCCCGCCGCCGCTCCGC
GAGCCGGGTACGTACTCACGCGAGCGCGCATTGGTCCTCCTGCGAGTT---GCTTGTTCCGTGCGTGCGTCCGTGCAGTG
CACCGTCACTGACGTACAGGCCGGCCGCGACGGTGCATTTCGTCATGGCGGCGCCGCCAAGTCCACCCTGAGAAGGATTA
ACGCTGTTATTTTTCTTCCTCACTGTTCCTGACATGAATGCTACGCTGTGCTGTGCAGTCGTCGGCGTCGAAGCTACTGA
AGGAGACGTGCGGATACATCAAGAGCCTCCACCAGGAGGTTGACGATCTCTCCGATAGGCTCTCGGAGCTAATGTCGACC
TTGGACGAGACCAGCCCCCAGGCCGAGATCATCCGGAGCCTTCTCCGCTAG-----------------------------
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>chr4D_1_TraesCS4D01G286800
TTAGGAAAACTTGTTTTGCTTAAGTTTCTTGTTCTCAGAATAAGGCTAGTGGTAGTTTAGCTAGAATTGTTAGAGTAGAA
GGATGGACTATAACTTGGTTAGGGTCCGGTCCTGATGAAGTTTTGGGAATTGTCCTTGATGACTG---TAAAGACATTGT
GATTGAGTAATACAAGTATTTCTCCCAAA-----AAAAAGATGCTCATACTTGCAGTATTTACTCTGGCTGACTGGCACA
CATTGTTCGAAATCATAATCACAGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTGGTCAACATTCTGGGTCCTCCAG-TGTCTGGAGGCCGGGCCTGGTCATTTTGGGGCCAGTGTCGGGA
GCCCGGGCCTAAATGAAGGCGCAGTGGGCCCGTGGCCTCTTTTCGCTATCAATAT----GACGATCTATGCCCCCGTTCT
CCTTCAAATAGCCACCCCGGCTGCGCTGCCTGCCTACCTCCTCGTTCTCTCTGCTCTCCTCTCACTAAGACACTGACCAT
CACAGTGTCACACGCAGACGCTTCATCGGCTGAATCACCAGCCAAGGTAAAGCATCAACACATACACGAGCAAGCAAGGA
AAGCCAAGC-TTAGCTGTCTCCGATCACAGCCGGCCGC--------AGAGAGAGAGAGGGAGATGTCGAGCCGCCGTGGC
CGGATCACCGACGAAGAGATCAACGAGCTCATCTCCAAGATCCAGGCGGTGCTCCCGGAATCATCCCGCCGCCGCTCCGC
GAGCCGGGTACGTACTCACGCGAGCGCGCATTGGTCCTCCTGCGAGTT---GCTTGTTCCGTGCGTGCGTCCGTGCAGTG
CACCGTCACTGACGTACAGGCCGGCCGCGACGGTGCATTTCGTCATGGCGGCGCCGCCAAGTCCACCCTGAGAAGGATTA
ACGCTGTTATTTTTCTTCCTCACTGTTCCTGACATGAATGCTACGCTGTGCTGTGCAGTCGTCGGCGTCGAAGCTACTGA
AGGAGACGTGCGGATACATCAAGAGCCTCCACCAGGAGGTTGACGATCTCTCCGATAGGCTCTCGGAGCTAATGTCGACC
TTGGACGAGACCAGCCCCCAGGCCGAGATCATCCGGAGCCTTCTCCGCTAGCCGGATTTTATCCTACCGATCGAGCCAGT
AGGCAGTAGCTACATATATATTAGCTTGAATTCATCGGCCGAA-GAGGGAGACGAAGAGGCAAGACAAGAGAAGAGAAGA
CAACAAGAGAGGCATAGCATTTTTTAGCTGCTGCTTGTTTCTTTTCCTTCCTGCTCCCCCGTCTCC-GGTACGTCGTCGT
C--------TGTGTGTGTTTGTGTTTGTGAGGCCCTCATTTAGCTTCCGGTATACTCCTACTCCACTGTGTTTCATTTAT
GCACCGGGTTGGTAGAGGTTAATAATATATATGGTACTTCTACTGATTAGCTGAGTGTATTACTACTAGCTTGTAGACGT
GTGTGTTTGTGCTGTTATAGGCCTGTAGCTTTGTCACTGTTTTCTACTGATTAGTTTCTCTCAGACTGATGAGATGCATC
--CTCTAGCTATAGAGGTGTTGTTTTGT----ACTACTACTAGTACTATCAATTGCTAGCTTTGTCCCTGTTTTCCAACG
GACAAGCTAGCTAGGTTAACGACGACCGTGGACTACGGAGAACTGTCTGTTTTTGTACTATCTGTTTAATTACTGCCACG
TCTTCTCTGCATAACT------TACTACT--CCGTACGGTCAAGTTATTTGGAGCAATGTGCAAGTGCCACGTAGGCCCT
GTTTTGATTCATGGGTTAGAGCTAGTTTGAGCTAGTTTGGGTTCAAATAGCTCTAAAGTCTTCAAACATGAGACTAGTTT
AAACTAGTTGCATCTAACCCACCTAAAAAACTATCCCATCCAAGATGTGCTAATTGGAGCTAGTTCTCCTAGTGCATTTA
TTGTTAATCTAACCTTGTCATCCAAACACCTCTTTGACTAGAGTTAGTTCAAGGTTAGTCATGAGCTAAAAACTAACTCT
AACATCTAGCTAAGTTAGAGTATCCAAACAGGACCATAGAAAAATGAAGAACCTCTCGTGCGTGCTAGCGGGCGTACGTG
CGCATGTACCGTCGAAATAGTCGGTGTGCTTGTAA
>chr4A_2
-TAGGCAAACTTGTATTACTCAGATTTCTCGTTCTCGGAATAAGGCTAGTGGTAGTTTAGCTAGATTTGTTAGAGTAGAA
GGACGGACTATGACTTGCTTAGAGTCCGGTCCTGATGAAGTTTTGGGAATTGTCCTTGATGACTATAATAAAGACATTGT
GATTGAGTAATACAAGTATTTCTTCCAAAAAAACAAGAAGACGCTCATACTTGCAGTATTTACTCTGGCTGACTGGCACA
CATTGCTCGAAATCATAATCACAGAGGACAGTGGAGCAATGGTGCCCCGGCGCTGGGGTCCTGGCACGACTCCCTGGAGC
CCATGGGCCGGGC-------------------------------------------------------------------
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-----------CTGGTCATCATTCTGGGTCCTCCAAATGTCTGGAGCCCGGGCCTGGTCATTTTGGGGCCAGTGTCGGGA
GCCCAGGCCTAAATGAAGGCGCAGTGGGCCCGTGGCCTCTTTTCGCCATCAATGTGCTAGAC------TG-CCCCGTTCT
CCTTCAAATAGCCGCCCCGGCTGCGCTGCCTGCCTA---CCTCGTTCTCTCTGCTCTCCTCCCACTCACACACTCACCAA
CACA--GTCACACGCAGACGCTTCATCGGCCGAATCACAGGCTAAGGTAAAGCATCAACATATACACGAGCAAGCAAGGA
AAGCCAAGCGTTAGCTGTCTCCGATCAGAGCCGGCCGGCCGCAGAGAGAGAGAGGGAGGGAGATGTCGAGCCGCCGTGGC
AGGATCACCGACGAGGAGATCAACGAGCTCATCTCCAAGCTCCAGGCGCTGGTCCCGGAATCATCCCGCCGCCGCTCCGC
GAGCCGGGTACGTACTCACGCGAGCGCGCATTGGTCCTCCTGCGAGTTTTTGCTTGTTCCATGCGTGCGTCCGTGCAGCG
CACCGACACTG----ACAGGCCGGCCGCGACTGTGCATTTCGTCACGGCGGCGCCGCCAAGTCTACCCTGAGAAGGATTA
GCACTGTTGTTTTTCTTCCTCGCTGTTCCTGACATGAATGCTATGCTGTGCTGCGCAGTCGTCGGCGTCGAAGCTGCTGA
AGGAGACGTGCGGATACATCAAGAGCCTCCACCAGGAGGTCGAGGACCTCTCCGACAGGCTCTCGGAGCTAATGTCGACC
TTGGACGAGACCAGCCCCCAGGCCGAGATCATCCGGGGCCTTCTCCGCTAGCCGGATTTTATCCTACCGATTGAGCCAGT
AGGCAGTAGCTACATATATATTAGCTTGAATTCATCGGCCGAAGGAGGGAGACGAGGAGGCAAGACAAGAGAAGAGAAGA
CAACAAGAGAGGCATAGCATTTTTTAGCTGCTGCTTGTTTCTTTTCCTGCCTGCTCCCCCGTCTCCTGGTACGTCGTCGT
CCGTGTGCGTGTG------TGTCTTTGTGAGGCCCTCATTTAGCTTCCGGTATACTCC------ACTGTGTTTCATTTAT
GCACCAGGTTGGTAGAGGTTAATAATATATATGGTGCTTCTACCGATTAGCCGAGTGTATTACTACTAGCTTGTAGACGT
GTGTGTTTGTGCTGTTGTAGGCCTGTAGCT--------------------------TCTCTCAGACTG---AGATGCATC
--CTCTGGCTATAGAGCTGTTGTTTTGT----ACTAC---TAGTACTATCTATTGCTAGGTTTGTCCCTGTTTTCCAACG
GACAAGCTAGCTAGGTTAACGACGAGCGTGGACTACGGAGAACTGTCTGTTTTTGTACTATCTGTTTAATTACTGCTACG
TCTTCTCTGCATAACT------TACTCTACCACGTACGGTCAAGTTATTTGGAGCAATGTGCAAGTGCCACATAG-----
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>chr4B_644
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-----------CTGGTCATCATTCTGGGTCCTCCAC-TGTCTGGATCCCGGGCCTGGTCATTTTGGGGCCAGTGTCGGGA
GCCCAGGCCTAAATGAAGGCGCAGTGGGCCCGTGGCCTCTTTTCGCCATCAATGTGCTAGACGATCTCTG-CCCCGTTCT
CCTTCAAATAGCCACCCCGGCTGCGCTGCCTG----CCTCCTCGTTCTCTCTGCTCTCCTCTCACTCAGACACTCACCAT
CACA--GTCACACGCAGACGCTTCATCGGCTGAATCACCAGCCAAGGTAAAGCATCAACACATACACGAGCAAGCAAGGA
AAGCCAAGCGTTAGCTGTCTCCAATCAGAGCCGGCCGGCCGC------AGAGAGAGAGTGAGATGTCGAGCCGCCGTGGC
AGGATCACCGACGAGGAGATCAACGAGCTCATCTCCAAGCTCCAGGCGCTGCTCCCGGAATCATCCCGCCGCCGCTCCGC
GAGCCGGGTACGTACTCACGCGAGCGCGCATTGGTTCTCCTGCGAGTT---GCTTGTTACATGCGTGCGTCCGTGCAGTG
CACCGTCACTG----ACAGGCCGGCCGCGACTGTGCATTTCGTCACGGCGGCGCCGCCAAGTCTACCCTGAGAAGGATTA
GCACTGTTATTTTTCTTCCTCACTGTTCCTGACATGAATGCTATGCTGTGCTGTGCAGTCGTCGGCGTCGAAGCTACTGA
AGGAGACGTGCGGCTACATCAAGAGCCTCCACCAGGAGGTGGACGATCTGTCTGACAGGCTCTCTGAGCTAATGTCGACC
TTGGACGAGAGCAGCCCCCAGGCCGAGATCATCCGGAGCCTTCTCCGCTAGCCGGACTTTATCCTACCAC----GCCAGT
AGGCAATAGCTACATATATATTAGCTTCAATTCATCGACCCAA-GAGGGAGACGAGGAGGCAAGACAAGAGAAGAGAAGA
CAACAAGAGAGGCATAGCATTTTTTAGCTGCTGCTTGTTTCTTTTCCTTCCTGCTCCCCCGTCTCCTGGTACGTCGTCGT
C--------TGTG------TGTGTTTGTGAGGCCCTCATTTAGCTTCCGGTATACTCC------ACTGTGTTTCATTTAT
GCACCAGGTTGGTAGAGGTTAATAATATATATGGTACTTCTACCGATTAACTGAGTGTATTACTACTAGGTTGTAGACGT
GTGTGTTTGTGCTGTTGTAGGCCTGTAGCT--------------------------CCTCTCAGACTG---AGATGCATC
TCCTCTACCTATAGAGGTGTTGTTTTGTAGTAACTAC---TAGTACTATCTATTGCTAGCTTTGTCCTTGTTTTCCAACG
GACAAGCTAG----GTTAACGACGACCGTGGACTACGGAGAACTGTCTGTTTTTCTACTATCTGTTTAATTACTGCCATG
TCTTCTCTGCATAACTTACTGCTACTACT--ACGTACGGTCAAGTTATTTGGAGCAACGTGCAGGTGCCACATAG-----
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>SNPs
S----S--------S--S--S-SS-----S------S----------------------------S--------------
---S-------S-----S----S-----------------------------------------S---------------
-----------------------S------------S----S--------------------------------------
-----S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS-------S----------------S----------S---------------------------------
----S-----------------------------------------S------S-------------S--S---------
------------------------------------------------------------------S-------S-----
----SS--------------------------------------------------------------------------
---------------------------S---------S------------------------------------------
S-------------S------------------------S--------S-------------------------------
------------------------------------------------------------S-------------------
-----------SSSS----------------S-------------S-----------------S----------------
S-S----------------------------------------S------------------------------------
----------------------------------------S--------------S------------------------
-----------------------------------------------------------------------S--------
-------------------------------------------------------S------------------------
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-------------SSSSSS---------------------------------------SSSSSS----------------
-----S-------------------------------------S------------------------------------
----------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSS------------SSS---------
-------------------------------------SSS----------S-----------------------------
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-------------------------------S---------------------------------------S---SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_246
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------------------------------------------------------------------GGCTGACTGGCACA
CATTGT--------------------------------------------------------------------------
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>reverse_1699
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------------------TTGTGTTTGTGAGGCCCTCA------------------------------------------
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