Multiple sequence alignment - TraesCS4D01G286600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G286600 chr4D 100.000 2631 0 0 1 2631 458092675 458090045 0.000000e+00 4859
1 TraesCS4D01G286600 chr4A 94.533 2140 64 15 56 2188 10937677 10939770 0.000000e+00 3254
2 TraesCS4D01G286600 chr4A 94.855 1244 28 11 1 1216 10937594 10938829 0.000000e+00 1910
3 TraesCS4D01G286600 chr4A 92.487 386 24 3 2233 2614 10939784 10940168 4.950000e-152 547
4 TraesCS4D01G286600 chr4B 95.868 1210 40 7 1 1205 572158642 572157438 0.000000e+00 1949
5 TraesCS4D01G286600 chr4B 87.923 1300 91 29 1274 2557 572157437 572156188 0.000000e+00 1471
6 TraesCS4D01G286600 chr4B 96.053 76 3 0 2556 2631 572156084 572156009 9.890000e-25 124
7 TraesCS4D01G286600 chr2B 91.566 83 7 0 1491 1573 746680788 746680870 5.950000e-22 115
8 TraesCS4D01G286600 chr2A 92.958 71 5 0 1491 1561 744408905 744408975 1.290000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G286600 chr4D 458090045 458092675 2630 True 4859.000000 4859 100.000000 1 2631 1 chr4D.!!$R1 2630
1 TraesCS4D01G286600 chr4A 10937594 10940168 2574 False 1903.666667 3254 93.958333 1 2614 3 chr4A.!!$F1 2613
2 TraesCS4D01G286600 chr4B 572156009 572158642 2633 True 1181.333333 1949 93.281333 1 2631 3 chr4B.!!$R1 2630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 941 0.603975 GTCTGCCACCACTTCTGTCC 60.604 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2294 2353 0.31716 AGACGGCGAGTGTGATTTCA 59.683 50.0 16.62 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 109 6.992063 TTTTATAAGGAGCAAAGCTGAGAG 57.008 37.500 0.00 0.00 39.88 3.20
539 569 3.425713 CACTTGCAGCGGCGATGT 61.426 61.111 26.78 3.19 45.35 3.06
593 623 4.349636 CAGTATGGTCTCTCTCCCTCTCTA 59.650 50.000 0.00 0.00 0.00 2.43
594 624 5.014123 CAGTATGGTCTCTCTCCCTCTCTAT 59.986 48.000 0.00 0.00 0.00 1.98
595 625 3.874383 TGGTCTCTCTCCCTCTCTATG 57.126 52.381 0.00 0.00 0.00 2.23
596 626 3.127250 TGGTCTCTCTCCCTCTCTATGT 58.873 50.000 0.00 0.00 0.00 2.29
597 627 3.137544 TGGTCTCTCTCCCTCTCTATGTC 59.862 52.174 0.00 0.00 0.00 3.06
598 628 3.394606 GGTCTCTCTCCCTCTCTATGTCT 59.605 52.174 0.00 0.00 0.00 3.41
599 629 4.505039 GGTCTCTCTCCCTCTCTATGTCTC 60.505 54.167 0.00 0.00 0.00 3.36
600 630 4.348168 GTCTCTCTCCCTCTCTATGTCTCT 59.652 50.000 0.00 0.00 0.00 3.10
601 631 4.347876 TCTCTCTCCCTCTCTATGTCTCTG 59.652 50.000 0.00 0.00 0.00 3.35
614 644 6.112734 TCTATGTCTCTGTGTCTCTCTCTTC 58.887 44.000 0.00 0.00 0.00 2.87
638 680 5.447279 CGCAGTTCCGCTTTCAGTTTAATAT 60.447 40.000 0.00 0.00 0.00 1.28
711 753 2.529744 GGGTCTTGGACTGGGCTGT 61.530 63.158 0.00 0.00 32.47 4.40
736 778 5.477510 CACTGTGTAGATCAGAAGAAGCTT 58.522 41.667 0.00 0.00 36.81 3.74
854 896 2.044793 TCCCTCTCTTCCAACACCAT 57.955 50.000 0.00 0.00 0.00 3.55
865 907 5.473504 TCTTCCAACACCATTTCTTCTTAGC 59.526 40.000 0.00 0.00 0.00 3.09
899 941 0.603975 GTCTGCCACCACTTCTGTCC 60.604 60.000 0.00 0.00 0.00 4.02
931 973 2.027561 TCTCACTCCAACCATAAACCCG 60.028 50.000 0.00 0.00 0.00 5.28
1176 1218 6.830324 TCTCTCTTTATATGCAGCAAATGGTT 59.170 34.615 0.00 0.00 0.00 3.67
1216 1258 7.507616 TGGTTAGACTCTTCTTCTTCTTCTTCT 59.492 37.037 0.00 0.00 32.75 2.85
1217 1259 8.364894 GGTTAGACTCTTCTTCTTCTTCTTCTT 58.635 37.037 0.00 0.00 32.75 2.52
1218 1260 9.406828 GTTAGACTCTTCTTCTTCTTCTTCTTC 57.593 37.037 0.00 0.00 32.75 2.87
1219 1261 7.839680 AGACTCTTCTTCTTCTTCTTCTTCT 57.160 36.000 0.00 0.00 0.00 2.85
1220 1262 8.250143 AGACTCTTCTTCTTCTTCTTCTTCTT 57.750 34.615 0.00 0.00 0.00 2.52
1221 1263 8.360390 AGACTCTTCTTCTTCTTCTTCTTCTTC 58.640 37.037 0.00 0.00 0.00 2.87
1222 1264 8.250143 ACTCTTCTTCTTCTTCTTCTTCTTCT 57.750 34.615 0.00 0.00 0.00 2.85
1223 1265 8.704668 ACTCTTCTTCTTCTTCTTCTTCTTCTT 58.295 33.333 0.00 0.00 0.00 2.52
1224 1266 9.196552 CTCTTCTTCTTCTTCTTCTTCTTCTTC 57.803 37.037 0.00 0.00 0.00 2.87
1225 1267 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1226 1268 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1227 1269 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1228 1270 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1229 1271 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1230 1272 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1231 1273 8.700051 TCTTCTTCTTCTTCTTCTTCTTCTTCA 58.300 33.333 0.00 0.00 0.00 3.02
1232 1274 8.655651 TTCTTCTTCTTCTTCTTCTTCTTCAC 57.344 34.615 0.00 0.00 0.00 3.18
1233 1275 7.786030 TCTTCTTCTTCTTCTTCTTCTTCACA 58.214 34.615 0.00 0.00 0.00 3.58
1234 1276 7.708752 TCTTCTTCTTCTTCTTCTTCTTCACAC 59.291 37.037 0.00 0.00 0.00 3.82
1235 1277 6.878317 TCTTCTTCTTCTTCTTCTTCACACA 58.122 36.000 0.00 0.00 0.00 3.72
1236 1278 6.758886 TCTTCTTCTTCTTCTTCTTCACACAC 59.241 38.462 0.00 0.00 0.00 3.82
1237 1279 5.977635 TCTTCTTCTTCTTCTTCACACACA 58.022 37.500 0.00 0.00 0.00 3.72
1238 1280 5.812642 TCTTCTTCTTCTTCTTCACACACAC 59.187 40.000 0.00 0.00 0.00 3.82
1239 1281 5.084818 TCTTCTTCTTCTTCACACACACA 57.915 39.130 0.00 0.00 0.00 3.72
1240 1282 4.870426 TCTTCTTCTTCTTCACACACACAC 59.130 41.667 0.00 0.00 0.00 3.82
1241 1283 3.531538 TCTTCTTCTTCACACACACACC 58.468 45.455 0.00 0.00 0.00 4.16
1242 1284 2.325583 TCTTCTTCACACACACACCC 57.674 50.000 0.00 0.00 0.00 4.61
1243 1285 1.557371 TCTTCTTCACACACACACCCA 59.443 47.619 0.00 0.00 0.00 4.51
1244 1286 2.026729 TCTTCTTCACACACACACCCAA 60.027 45.455 0.00 0.00 0.00 4.12
1272 1314 2.137523 GAAATTGGCCACTGCTTTGTG 58.862 47.619 3.88 0.00 37.74 3.33
1283 1325 5.493133 CACTGCTTTGTGGTAGTTACAAA 57.507 39.130 0.00 0.00 43.50 2.83
1284 1326 6.072112 CACTGCTTTGTGGTAGTTACAAAT 57.928 37.500 0.00 0.00 44.32 2.32
1288 1330 7.172703 ACTGCTTTGTGGTAGTTACAAATCTAC 59.827 37.037 0.00 0.00 44.32 2.59
1311 1353 0.608035 TCACCGTTCAATCCCTTGGC 60.608 55.000 0.00 0.00 32.95 4.52
1329 1373 6.303839 CCTTGGCTACATTAAGGCCTAATAA 58.696 40.000 5.16 1.60 45.45 1.40
1345 1389 9.866655 AGGCCTAATAAATGATGAACTAATCAA 57.133 29.630 1.29 0.00 42.54 2.57
1356 1400 7.851228 TGATGAACTAATCAACTATGTCCTGT 58.149 34.615 0.00 0.00 42.54 4.00
1908 1954 0.239347 GTGTGTGATGTGCTGCTTCC 59.761 55.000 0.00 0.00 0.00 3.46
1909 1955 0.179023 TGTGTGATGTGCTGCTTCCA 60.179 50.000 0.00 0.00 0.00 3.53
1910 1956 0.520404 GTGTGATGTGCTGCTTCCAG 59.480 55.000 0.00 0.00 42.13 3.86
1911 1957 0.109153 TGTGATGTGCTGCTTCCAGT 59.891 50.000 0.00 0.00 41.26 4.00
1912 1958 0.520404 GTGATGTGCTGCTTCCAGTG 59.480 55.000 0.00 0.00 41.26 3.66
1913 1959 0.607217 TGATGTGCTGCTTCCAGTGG 60.607 55.000 1.40 1.40 41.26 4.00
1915 1961 3.730761 GTGCTGCTTCCAGTGGCG 61.731 66.667 3.51 0.00 41.26 5.69
1917 1963 3.426568 GCTGCTTCCAGTGGCGTC 61.427 66.667 3.51 0.00 41.26 5.19
1918 1964 2.031012 CTGCTTCCAGTGGCGTCA 59.969 61.111 3.51 0.55 34.31 4.35
1919 1965 2.280797 TGCTTCCAGTGGCGTCAC 60.281 61.111 13.44 13.44 43.93 3.67
1948 1994 2.076100 CTCGAAGTGTTGCCATGCTTA 58.924 47.619 0.00 0.00 0.00 3.09
2160 2207 1.764571 AAGCACAGGTCGTTAGCCCA 61.765 55.000 0.00 0.00 0.00 5.36
2162 2209 1.671742 CACAGGTCGTTAGCCCAGT 59.328 57.895 0.00 0.00 0.00 4.00
2215 2264 0.796312 ATACTGACGCGTTGCAAAGG 59.204 50.000 15.53 4.49 34.21 3.11
2217 2266 1.205064 CTGACGCGTTGCAAAGGAG 59.795 57.895 15.53 7.63 37.52 3.69
2218 2267 2.175184 CTGACGCGTTGCAAAGGAGG 62.175 60.000 15.53 2.33 35.80 4.30
2220 2269 1.503818 GACGCGTTGCAAAGGAGGAA 61.504 55.000 15.53 0.00 35.80 3.36
2243 2299 2.540265 AAGAAGGCGATGCATCTAGG 57.460 50.000 23.73 10.16 0.00 3.02
2247 2303 0.470833 AGGCGATGCATCTAGGAGGT 60.471 55.000 23.73 0.00 0.00 3.85
2306 2365 5.411781 ACGGTAGATTCTGAAATCACACTC 58.588 41.667 0.00 0.00 43.21 3.51
2312 2371 0.716108 CTGAAATCACACTCGCCGTC 59.284 55.000 0.00 0.00 0.00 4.79
2326 2385 1.136252 CGCCGTCTGAATGAACTTGTG 60.136 52.381 0.00 0.00 0.00 3.33
2598 2766 2.726822 GAAACTCCCAGTTCCGCCGT 62.727 60.000 0.00 0.00 37.47 5.68
2606 2774 4.681978 GTTCCGCCGTCCAGTGCT 62.682 66.667 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.107643 TGAGTGCATGAACCGAACCA 59.892 50.000 0.00 0.00 0.00 3.67
80 109 6.372659 TCCTGTCAGATCAGAAATTTTAGCAC 59.627 38.462 0.00 0.00 37.61 4.40
374 403 3.268334 TCTTGCCCCCACATTATGTACTT 59.732 43.478 0.00 0.00 0.00 2.24
539 569 3.374367 GTGTGAGTCTCATGCTACTCGTA 59.626 47.826 17.29 9.49 44.14 3.43
593 623 3.689161 CGAAGAGAGAGACACAGAGACAT 59.311 47.826 0.00 0.00 0.00 3.06
594 624 3.070748 CGAAGAGAGAGACACAGAGACA 58.929 50.000 0.00 0.00 0.00 3.41
595 625 2.159572 GCGAAGAGAGAGACACAGAGAC 60.160 54.545 0.00 0.00 0.00 3.36
596 626 2.080693 GCGAAGAGAGAGACACAGAGA 58.919 52.381 0.00 0.00 0.00 3.10
597 627 1.809547 TGCGAAGAGAGAGACACAGAG 59.190 52.381 0.00 0.00 0.00 3.35
598 628 1.809547 CTGCGAAGAGAGAGACACAGA 59.190 52.381 0.00 0.00 0.00 3.41
599 629 1.539388 ACTGCGAAGAGAGAGACACAG 59.461 52.381 0.00 0.00 0.00 3.66
600 630 1.610363 ACTGCGAAGAGAGAGACACA 58.390 50.000 0.00 0.00 0.00 3.72
601 631 2.591133 GAACTGCGAAGAGAGAGACAC 58.409 52.381 0.00 0.00 0.00 3.67
614 644 0.307760 AAACTGAAAGCGGAACTGCG 59.692 50.000 0.00 0.00 40.67 5.18
711 753 4.814147 CTTCTTCTGATCTACACAGTGCA 58.186 43.478 0.00 0.00 36.81 4.57
736 778 0.547712 AGGGCAGGCAAGAGGAAGTA 60.548 55.000 0.00 0.00 0.00 2.24
854 896 3.432378 ACGGAGAGGAGCTAAGAAGAAA 58.568 45.455 0.00 0.00 0.00 2.52
865 907 1.034838 CAGACAGGGACGGAGAGGAG 61.035 65.000 0.00 0.00 0.00 3.69
899 941 3.475566 TGGAGTGAGACAAGTTTGAGG 57.524 47.619 0.00 0.00 0.00 3.86
931 973 0.390998 GAGAGAGCCCAAGACAGTGC 60.391 60.000 0.00 0.00 0.00 4.40
1176 1218 8.540507 AGAGTCTAACCATAATTTCTAGAGCA 57.459 34.615 0.00 0.00 0.00 4.26
1216 1258 5.351465 GTGTGTGTGTGAAGAAGAAGAAGAA 59.649 40.000 0.00 0.00 0.00 2.52
1217 1259 4.870426 GTGTGTGTGTGAAGAAGAAGAAGA 59.130 41.667 0.00 0.00 0.00 2.87
1218 1260 4.034510 GGTGTGTGTGTGAAGAAGAAGAAG 59.965 45.833 0.00 0.00 0.00 2.85
1219 1261 3.938963 GGTGTGTGTGTGAAGAAGAAGAA 59.061 43.478 0.00 0.00 0.00 2.52
1220 1262 3.531538 GGTGTGTGTGTGAAGAAGAAGA 58.468 45.455 0.00 0.00 0.00 2.87
1221 1263 2.614057 GGGTGTGTGTGTGAAGAAGAAG 59.386 50.000 0.00 0.00 0.00 2.85
1222 1264 2.026729 TGGGTGTGTGTGTGAAGAAGAA 60.027 45.455 0.00 0.00 0.00 2.52
1223 1265 1.557371 TGGGTGTGTGTGTGAAGAAGA 59.443 47.619 0.00 0.00 0.00 2.87
1224 1266 2.036958 TGGGTGTGTGTGTGAAGAAG 57.963 50.000 0.00 0.00 0.00 2.85
1225 1267 2.490115 GTTTGGGTGTGTGTGTGAAGAA 59.510 45.455 0.00 0.00 0.00 2.52
1226 1268 2.088423 GTTTGGGTGTGTGTGTGAAGA 58.912 47.619 0.00 0.00 0.00 2.87
1227 1269 1.815613 TGTTTGGGTGTGTGTGTGAAG 59.184 47.619 0.00 0.00 0.00 3.02
1228 1270 1.542030 GTGTTTGGGTGTGTGTGTGAA 59.458 47.619 0.00 0.00 0.00 3.18
1229 1271 1.169577 GTGTTTGGGTGTGTGTGTGA 58.830 50.000 0.00 0.00 0.00 3.58
1230 1272 0.884514 TGTGTTTGGGTGTGTGTGTG 59.115 50.000 0.00 0.00 0.00 3.82
1231 1273 1.621992 TTGTGTTTGGGTGTGTGTGT 58.378 45.000 0.00 0.00 0.00 3.72
1232 1274 2.230025 TCTTTGTGTTTGGGTGTGTGTG 59.770 45.455 0.00 0.00 0.00 3.82
1233 1275 2.520069 TCTTTGTGTTTGGGTGTGTGT 58.480 42.857 0.00 0.00 0.00 3.72
1234 1276 3.584406 TTCTTTGTGTTTGGGTGTGTG 57.416 42.857 0.00 0.00 0.00 3.82
1235 1277 4.817318 ATTTCTTTGTGTTTGGGTGTGT 57.183 36.364 0.00 0.00 0.00 3.72
1236 1278 4.332268 CCAATTTCTTTGTGTTTGGGTGTG 59.668 41.667 0.00 0.00 34.51 3.82
1237 1279 4.512484 CCAATTTCTTTGTGTTTGGGTGT 58.488 39.130 0.00 0.00 34.51 4.16
1238 1280 3.312146 GCCAATTTCTTTGTGTTTGGGTG 59.688 43.478 0.00 0.00 37.81 4.61
1239 1281 3.540617 GCCAATTTCTTTGTGTTTGGGT 58.459 40.909 0.00 0.00 37.81 4.51
1240 1282 2.877786 GGCCAATTTCTTTGTGTTTGGG 59.122 45.455 0.00 0.00 37.81 4.12
1241 1283 3.312146 GTGGCCAATTTCTTTGTGTTTGG 59.688 43.478 7.24 0.00 39.84 3.28
1242 1284 4.034279 CAGTGGCCAATTTCTTTGTGTTTG 59.966 41.667 7.24 0.00 33.15 2.93
1243 1285 4.190772 CAGTGGCCAATTTCTTTGTGTTT 58.809 39.130 7.24 0.00 33.15 2.83
1244 1286 3.795877 CAGTGGCCAATTTCTTTGTGTT 58.204 40.909 7.24 0.00 33.15 3.32
1272 1314 5.811100 GGTGAGCAGTAGATTTGTAACTACC 59.189 44.000 0.00 0.00 39.53 3.18
1283 1325 3.430929 GGATTGAACGGTGAGCAGTAGAT 60.431 47.826 0.00 0.00 0.00 1.98
1284 1326 2.094182 GGATTGAACGGTGAGCAGTAGA 60.094 50.000 0.00 0.00 0.00 2.59
1288 1330 0.036010 AGGGATTGAACGGTGAGCAG 60.036 55.000 0.00 0.00 0.00 4.24
1329 1373 9.334947 CAGGACATAGTTGATTAGTTCATCATT 57.665 33.333 0.00 0.00 33.07 2.57
1345 1389 7.676683 ATTGTAGGATTGTACAGGACATAGT 57.323 36.000 0.00 0.00 38.07 2.12
1353 1397 5.066893 AGCATGCAATTGTAGGATTGTACAG 59.933 40.000 21.98 0.00 38.86 2.74
1356 1400 5.439721 AGAGCATGCAATTGTAGGATTGTA 58.560 37.500 21.98 0.00 38.86 2.41
1834 1878 1.135603 GGCGGGGTTTGATTTAACGAC 60.136 52.381 0.00 0.00 0.00 4.34
1917 1963 3.777925 CTTCGAGTTGGCGCCGTG 61.778 66.667 23.90 9.45 0.00 4.94
1918 1964 4.295119 ACTTCGAGTTGGCGCCGT 62.295 61.111 23.90 9.03 0.00 5.68
1919 1965 3.777925 CACTTCGAGTTGGCGCCG 61.778 66.667 23.90 9.58 0.00 6.46
1920 1966 2.251642 AACACTTCGAGTTGGCGCC 61.252 57.895 22.73 22.73 0.00 6.53
1998 2045 5.511386 AAGAAGACAACTCCCATGAATCT 57.489 39.130 0.00 0.00 0.00 2.40
2000 2047 5.244626 CCAAAAGAAGACAACTCCCATGAAT 59.755 40.000 0.00 0.00 0.00 2.57
2162 2209 1.202348 ACGTTGCGATCAGTCATCAGA 59.798 47.619 0.00 0.00 0.00 3.27
2188 2237 2.960129 GCGTCAGTATTCCCGCGG 60.960 66.667 21.04 21.04 36.53 6.46
2190 2239 1.808390 AACGCGTCAGTATTCCCGC 60.808 57.895 14.44 0.00 42.53 6.13
2193 2242 0.793861 TTGCAACGCGTCAGTATTCC 59.206 50.000 14.44 0.00 0.00 3.01
2225 2281 1.617850 CTCCTAGATGCATCGCCTTCT 59.382 52.381 20.67 5.76 0.00 2.85
2243 2299 0.390860 ACTGTCACTGCTCACACCTC 59.609 55.000 0.00 0.00 0.00 3.85
2247 2303 1.802508 CGTCAACTGTCACTGCTCACA 60.803 52.381 0.00 0.00 0.00 3.58
2293 2352 0.716108 GACGGCGAGTGTGATTTCAG 59.284 55.000 16.62 0.00 0.00 3.02
2294 2353 0.317160 AGACGGCGAGTGTGATTTCA 59.683 50.000 16.62 0.00 0.00 2.69
2295 2354 0.716108 CAGACGGCGAGTGTGATTTC 59.284 55.000 16.62 0.00 45.98 2.17
2297 2356 1.964448 TCAGACGGCGAGTGTGATT 59.036 52.632 16.62 0.00 46.50 2.57
2298 2357 3.681473 TCAGACGGCGAGTGTGAT 58.319 55.556 16.62 0.00 46.50 3.06
2300 2359 0.388520 TCATTCAGACGGCGAGTGTG 60.389 55.000 16.62 0.00 44.63 3.82
2306 2365 1.136252 CACAAGTTCATTCAGACGGCG 60.136 52.381 4.80 4.80 0.00 6.46
2312 2371 5.696822 CAGTCAATCCACAAGTTCATTCAG 58.303 41.667 0.00 0.00 0.00 3.02
2326 2385 2.072298 GTGTCTGTCTGCAGTCAATCC 58.928 52.381 14.67 5.53 41.09 3.01
2345 2404 4.992319 TCGTGTCATTGAAAAGGTTATCGT 59.008 37.500 0.00 0.00 0.00 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.