>input_sequence_73494
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-ATGTCGAGCCGTAGGTCAAGGTCAAGGCAGTCCGGCTCGTCGAGGATCACTGACGAGCAAATCAGCGACCTTGTCTCCA
AGTTGCAGGACCTCCTTCCCGAGGCGCGTCTCCGGGGCAATGATAGAGTACGTAATCATTCATCATTGGCATTCTCTCTT
TATATGCAGCAAATGGTTGCTCTAGAAATTATGGTTAGACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACACACAC
ACCCAAACACAAAGAAATTGGCCACTGCTTTGTGGTAGTTACAAATCTACTGCTCACCGTTCAATCCCTTGGCTACATTA
AG--GCCTAATAAATGATGAACTAATCAACTATGTCCTGTACAATCCTACAATTGCATGCTCTTCCGACGCTTCAACTTT
CTGCATTAGCTATCATTAACATTATAATGATCTTGACCTGACAGCAGACCCGTTAATTTCCCTTTGGTTCCCCAAATCCA
GGTGCCATCTTCAAGGGTGCTGCAGGAGACGTGCACCTACATCAGGAGCTTGCACCGGGAGGTGGACGACCTGAGCGAGA
GGCTGTCGGAGCTGCTGGCGACCTCGGACATGAGCAGCGCGCAGGCGGCAATCATCCGCAGCTTGCTGATGTAG------
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>chr4D_1_TraesCS4D01G286600
TGATTGGTTCGGTTCATGCACTCATGTTTCAGCAGTTGTGCATGGTATTAGTTATATTTTTATAAG--------------
--------------GAGCAAAGCTGAGAGTGCTAAAATTTCTGATCTGACAGGATCGATATGTAGATAGGAATTAGGAAA
CTGTACAGAAATGTCACCATAATTACATTGTCTAGGAGGCACTTGCGCATCTATAGAGTAGTGAGTAGTGACTGGAATTT
ACCCGGTATCGCTGTTCCCCCGGGCCCTAGTGTTTGTGGAGACAAGAGATTTGTGCTTCATGCATGGGTGTACACTGAAC
CCTAGACATGTCCAAATAGAGCCGCAAACAAAGCCATCTACCAGTAACTGTAGAGCCACTGTTCTTATTTCATACAAATA
TTAAGTACATAATGTGGGGGCAAGAACAATAAA-CCCACATATATTTTGGCAGTTCAAGTAACATGGCATGTGTTTCTCC
TTCTGACAGTACTGGCCTCCAAGTCGTCTCTCCCACCAGCACTTCATCTCCTGTTGTTCAAAGCTTCCTCCCACTTGCAG
CGGCGATGTACGAGTAGCATGAGACTCACACAAGCTCCTCAGTATGGTCTCTCTCCCTCTCTATGTCTCTGTGTCTCTCT
CTTCGCAGTT------------CCGCTTTCAGTTTAATATTTCCTGCATGTGACTGCCATTTGGACCATAGTTTGGTTTT
GTCCCTATAGGTCAGGGTCTTGGACTGGGCTGTGCACTGTGTAGATCAGAAGAAGCTTACTTCCTCTTGCCTGCCCTTTG
GGTTTCTCGGTTTGCAGCTGCCACTATTTAACACCCTAGTAGCCACTCATTTCTTTCTCCCATGCACAACTTGTCTTCCC
TCTCTTCCAACACCATTTCTTCTTAGCTCCTCTCCGTCCCTGTCTGCCACCACTTCTGTCCCTCAAACTTGTCTCACTCC
AACCATAAACCCGCACTGTCTTGGGCTCTCTCTGCCAAGTATCCAATTCCTAAGTACATCCGATCACTCACATTTGCAGT
GATGTCGAGCCGTAGGTCAAGGTCAAGGCAGTCCGGCTCGTCGAGGATCACTGACGAGCAAATCAGCGACCTTGTCTCCA
AGTTGCAGGACCTCCTTCCCGAGGCGCGTCTCCGGGGCAATGATAGAGTACGTAATCATTCATCATTGGCATTCTCTCTT
TATATGCAGCAAATGGTTGCTCTAGAAATTATGGTTAGACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACACACAC
ACCCAAACACAAAGAAATTGGCCACTGCTTTGTGGTAGTTACAAATCTACTGCTCACCGTTCAATCCCTTGGCTACATTA
AG--GCCTAATAAATGATGAACTAATCAACTATGTCCTGTACAATCCTACAATTGCATGCTCTTCCGACGCTTCAACTTT
CTGCATTAGCTATCATTAACATTATAATGATCTTGACCTGACAGCAGACCCGTTAATTTCCCTTTGGTTCCCCAAATCCA
GGTGCCATCTTCAAGGGTGCTGCAGGAGACGTGCACCTACATCAGGAGCTTGCACCGGGAGGTGGACGACCTGAGCGAGA
GGCTGTCGGAGCTGCTGGCGACCTCGGACATGAGCAGCGCGCAGGCGGCAATCATCCGCAGCTTGCTGATGTAGAGCCGG
CTCCCATGCAGTGCGCAGGCGCCTCGTCGCTGTCTTGCTGAGCGCACAAGCCTGAATTTGAGCGTTTGTAGCCTAGGGAG
CGATCTTTAATTAGTACCGGAGTTGCAGGTTACCTACTTAATCCGCGTGTGTGCGCTGTCGTCGTGTCATCATCGTCTTA
ATCAGGCCCATCTTTTTTGTGTGTGTACTTAAATCAAGTCGTTAAATCAAACCCCGCCCGTGGTTCGTGCAAATTGTG--
CTCGCGTCTCGTTTGTGTGTGATGTGCTGCTTCCAGTGGCGTCACGGCGCCAACTCGAAGTGTTGCCATGCTTAGAAAAA
AA-GACACTCGGAAGTGTTGCTTGCTGCCTCTTTTGGCACAAGAAGATTCATGGGAGTTGTCTTCTTTTGGGCAGCAGCG
TGGTGGTCGCTGATGAGGGCAGATTCCTCTCGCTCTCCCTTGCTTTCCAGATCTCGCAGCTGCAATTATCAGGACTTCAC
AACCGACAGTTCCGCGATAACAAATCCAAGCACAGGTCGTTAGCCCAGTCTGATGACTGATC--GCAACGTCTGCTCCGC
GGGAATACTGACGCGTTGCAAAGGAGGAA-------AAAAAGAAGGCGATGCATCTAGGAGGTG---TGAGCAGTGACAG
TTGACGCTCGGTCAAAAAACTACGGTAGATTCTGAAATCACACTCGCCGTCTGAATGAACTTGTGGATTGACTGCAGACA
GACACGATAACCTTTTCAATGACACGATAAACCACAGTAGTGGGTGGGACGGGAGGGGGGATCCATTCCAATAATAATAT
CTCGATATCATTTTCAATGGGAGCCTACAGGATTCTGCTGTCGTCCGCGCTTCCGGCGTCGTCCCATGCCTAGCAGAGCA
----CCGGTTCCACTACTTACTCGTTCCCGCGAGTCAATCCTGGCTAAGCTAGGTACTA---------------------
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-G---GAGCTAGGAGTAGTATCCTATGAAACTCCCAGTTCCGCCGTCCAGTGCTGGCCACTTCTCGGCAACTACCGAC
>chr4A_1
TGATCGGTTTGGTTCATGCACTCATGTTTCAGCAGTTGTGCATGGTATTAGCTATATTTTTATAAGTTACGATGCAAGAG
CAGATTTTCATAAGGAGCAAAGCTGAGATTGCTAAAATTTCTGATCTGACAGGATAGATATGTAGATAGGAATTAGGAAA
CTGTACAAAAATGTCACCATAATTACATTGTCTAGGAGGCACTTGCGCATCTATGGAGTAGTGAGTAGTGACTGGAATTC
ACCCGGTATCACTGTTCCTCGGGGACCTAGTGTTTGCGGAGACAAGAGATTTGTGCTTCATGCACGGGTGTACACTGAAC
CCTAGACATGTCCAAATAGAGCCGCAAACAAAGCCATCTACCAGTAACTGTAGAGCCACTGTTCTTATTTCATACAAATA
TTGAGTACATAATGTGGGGGCAAGAACAATAAA-CCCACACATATTTTGGCAGTTCAAGTAACATGGCATGTGTTTCTCC
TTCTGACAGTACTGGCCTCCAAGTCGTCTCTCCCACCAGCACTTCATCTCCTGTTGTTCAAAGCTTCCTCCCACTTGCAG
CGGCGATGCACGAGTAGCATGAGACTCGCACAAGCTCCTCAGTATGGTCTCTCTCCCTCTCTC--------TGTCTCTCT
CTTGGCAGTT------------CCGCTTTCAGTTTAATACTTCCTGCATGTGACTGCCATTTGGACCATAGTTTGGTTTT
GTCCCTATAGGTCAGGGTCTTGTACTGGGCTGAGCACTGTGTAGATCAGAAGAAGCTCACTTCCTCTTGCCTGCCCTTTG
GGTTTCTCGGTTTGCAGCTGCCACTATTTAACACCCTAGTAGCCACTCATTTCTTTCTCCCATGCACAACTTGTCTTCCC
TCTCTTCCAACACCACTTCTTCTTAGTTCCTCTCCGTCCCTGTCTGCCACCACTTCTGTCTCTCAAACTTGTCTCACTCC
AACCATAAACCCTCACTGTCTTGGGCTCTCTCTGCCAAGCATCCAATTCCTAAGTACATCCGATCACTCACATTTGCAGT
GATGTCGAGCCGTAGGTCAAGGTCAAGGCAGTCCGGCTCGTCGAGGATCACTGACGAGCAAATCAGCGACCTTGTCTCCA
AGTTGCAGGACCTCCTTCCCGAGGCGCGTCTCCGGGGCAATGATAGAGTACGTAATCATTCATCATTGGCATTCTCTCTT
TATATGCAGCAAATGGTAGCTCTAGAAATTATGGTTAGACTCTTCTTCTTCTTCTTCAC---------------------
------ACACAAAGAAATTGGCCACTGCTTTGTTGTAGTTACGAC-CTATTGCTTACCGTTCAATTCCTTGGGTATATTA
TAAAGCCTAGTAGATGATGAACTAATCAGCTATGTCTTCGACAATCCTACAATTGCATGCTCTTCCGACGCTTCAACTTT
CTGCATTAGCTATCATTAACATTATAATGATCTTGACCTGACAGCAGACCCGTTAATTTCCCTTTGGTTCCCCAAATCCA
GGTGCCATCTTCAAGGGTGCTGCAGGAGACGTGCACCTACATCAGGAGCTTGCACCGGGAGGTGGACGACCTGAGCGAGA
GGCTGTCGGAGCTGCTGGCGACCTCGGACATGAGCAGCGCGCAAGCGGCCATCATCCGCAGCTTGCTGATGTAGAGCCGG
CTCCCATGCAGTGCGCAGGCGCCTCGTCGCTGTCTTGCTGAGCGCACAAGCCTGAATTTGAGCGTTTGTAGCCTAGGGAG
CGATCTTTAATTAGTACCGGAGTTGCAGGTTACCTACTTAATCCGCGTGTGTGCGCTGTCGTCGTGTCATCATCGTCTTA
ATCAGGCCCATCTTTTTTGTGTGTGTACTTAAATCAAATCGTTAAATCAAACCCCGCCCGTGGTTGGTGCAAGTTGTGCT
CTCGCGTGTCGTTTCTGTGTGATGTGCTGCTTCG---------CA-GCGCCAACTCGAAGTGTTGCTATGCTTGGAAAAA
AAAGACACTCGGAAGCGTTGCTTGCTGCCTCTTTTGGCACAAGAGGGTTCATGGGAGCTGTCCTCTTCTGGGCAGCAGCG
TGGTGGTCGCTGATGAGGGTAGATTCCTCTCGCTCTCCCTTGCTTTCCAGATCTCGCAGCTGCAATTATCAGGACTTCGC
AACCGACAGTTCCGCGCTAACGAATCCAAGCACAGGTCGTTAGCCCGGCCTGATGACTGATATGGCAACGTCTGCTTCCT
GAAGGCAATGATGCATC-----------------------------------------TAGGAGACATGAGCAGTGACAG
TTGACGCTCGGTCAAAAAACTACGGTAGATTTAAAGTG-ACACTGGCCGTGTGAATGAACCTGTCGATTGACCGCAGACG
GACGCGATAACCTTTTGAATGACACGATAAACCACAGTAGTGGGTGGGACGGGAGGGGGGATCCATTCCTATAATAATAT
GTCGATATCATTTTCAATGGGAGCCTACAGGATTCTGCTGTCGTCCGCGCTTCCGGCGTCGTCCCATGCCTAGCACAGCA
----CCGGTTCCACTACTTGCTCGTTCCCGCGAGTCAATCCTGGCTAAGCTAGGTACTA---------------------
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-GTAGGAGCTAGGAGCGGTATCCTATGAAACTCCCAGTTCCGCC----------GGCCACTTCTCGGCAACT------
>chr4B_1
TGATCGGTTCGGTTCATGCACTCATGTTTCAGCAGTTGTGCATGGTATTAGTTATATTTTTATAAG--------------
--------------GAACAAAGCTGAGATTGCTAAAATTTCTGATCTGCCAGGATCGGTATGTAGATAGGAATTAGGAAA
CTGTACAGAAATGTCACCATAATTACATTGTCTAGGAGGCACTTGCGCATCTATAGAGTAGTGAGTAGTGACTGGAATTT
ACCCGGTATCGCTGTTCCCCCGGGCCCTAGTGTTTGTGGAGACAAGAGATTTGTGCTTCATGCATGGGTGTACACTGAAC
CCTAGACATGTCCAAATAGAGCCGCAAACAAAGCCATCTACCAGTAACTGTAGAGCCACTGTTCTTATTTCATACACATA
TTGAGTACATAATGT-GGGGCAAGAACAATAAACCCCACATATATTTTGGCAGTTCGAGAAACATGGCATGTGTTTCTCC
TTCTGACAGTACTGGCCTCCAAGTCGTCTCTCCCACCAGCACTTCATCTCCTGTTGTTCAAAGCTTCCTCCCACTTGCAG
CGGCGATGCACGAGCAGCATGAGACTCACACAAGCTCCTCAGTATGGTCTCTCTCTCTCTCTC--------TCTCTCTCT
CTCTCTCTCTCTCTTCGCAGTCCCGCTTTCAGTTTAATACTTCCTGCATGTGACTGCCATTTGGACCATAGTTTGGTTTT
GTCCCTATAGGTCAGGGTCTTGGACTGGGCCGAGCACTGTGTGGATCAGAAGAAACTCACTTCCTCTTGCCTGCCCTTTG
GGTTTCTCGGTTTGCAGCTGCCACTATTTAACACCCTAGTAGCCACTCATTTCTTTCTCCCATGCACAACTTGTCTTCCC
TCTCTTCCAACACCACTTC---TTAGTTCCTCTCCGTCCCTGTCTGCCACCACTTCTGTCTCTCAAACTTGTCTCACTCC
AACCATAAACCCTCACTGTCTTAGGCTCTCTCTGCCAAGTATCCAATTCCTAAGTACATCCGATCACTCACATTTGCCAT
AATGTCGAGCCGTAGGTCACGGTCAAGGCAGTCTGGCTCGTCGAGGATCACTGACGAGCAAATCAGCGACCTTGTCTCCA
AGTTGCAGGACCTCCTTCCTGAGGCGCGTCTCCGGGGCAATGATAGAGTACGTA-TCATTCATCATTGGCGTTATCACTT
TATATGCAGCAAATGGTAGTTCTAGAAATTGTAATTAGACTCTTCT----------------------------------
----------------------------------GTAGTTACAGT-CTAGCATTCACCTTTCAGTCTCTTGGTTACATTA
AG--GCCTAAT-GATGATGAACTGATCAGCTATGTCTTGGACAATCCTACAATTGCATGCTCTTCCGACGCTTCAGCTT-
--GCATGAGCTAACATTAAAGTTATACTGATCTTGGCCTGACAACGGATCCTC---TTTCCCTTTGGTTCTCAAAATTCA
GGTGTCGTCTTCAAGGGTGTTGCAGGAGACGTGCACCTACATCAGGAGCTTGCACCGGGAGGTGGACGACCTGAGCGAGA
GGCTGTCGGAGCTGCTGGCGACCTCGGACATGAGCAGCGCGCAGGCGGCAATCATCCGCAGCTTGCTGATGTAGAGCCGG
CTCCCATGCAGTGCGCAGGCGCCTCGTCGCTGTCTTGCTGAGCGCACAAGCCTGAATTTGAGCGTTTGTAGCCTAGGGAG
CGATCTTTAATTAGTACCGGACTTGCAGGTTACCTACTTAATCCGCGTGTGTACGCTGTCGTCGTGTCATCGTC---TTA
ATCAGGCCCATCTTTTTTGTGTGTGTACTTAAATCAAAGCTCGT--------------CGTGGTTCGTGCAAATTTTG--
CTCGTGTCTCATTCGTGTGTGCAAGAGTAGGCGTCACCTCTTTCA-GCGCCAATTTAAAGTGTTGCTATGCTTGAAAAAA
AA-----CTGGGAAGTGTTGCTTGCTTCCTCTTTTGGCACAAGAGGGTTCATGGGAGTTGTCTTCTTTTGGGCAGCAGCA
GGGTGGGCGCTGATGAGGGCAGATTCCTTTCGCTCTCCCTTGCTTTCCAGATCTCGCAGCTGCAATTATCAGGACTTCAC
AACCGACAGTTCCGCGATAACAAATCCAAGCACAGGTCGTTAGCCCGGCCTGATGACTGATC--GCAACGCCTGCTTCCC
GAGAATACTGACTTGTTGCAAAGAAAAAGAAGGGGGAAAACGAAGGCGATGCATCTAGTAGGAGACATGAGCAGTGACGG
TTG-CGCTCGGTCAAAAAACTACGGTAGAATTAAAGTG-ACACTGGCCGTGTGAATGAACTTGTCGATTGACTGCAGACA
GACGCGATAACCTTTTCAATGACACGATAAACTACAGTAGTGGGCGGGACGGGGGGATCC------------AATAATAT
CTCGATATCATTTTCAATGGGAGCCTACAGGATTCTGCTGTCCTGCGCGCTTCCGGCGTCGTCCCATGCCTAGAAGCATA
GCACCCGGTTCCACT----ACTCGTTCCCGCTAGTCAATCCTGGCTAAGCTAGGTACTACTCCCTCCGTTCGGAATTACT
TGTCGCGAAAATGAATGTATCTAGACGTATTTTAGTTCTAGATACATCCATTTTCAAGACAAGTAATTTCGAACGGAGGA
AGTAGGAGCTAGGAGTAGTATCCTATGAAAGTCCCAGTTCCGCCGGCCAGTGCCGGCCACTTCTCGGCAACTACCGAC
>SNPs
----S---------------------------------------------------------------------------
----------------------------S---------------------------------------------------
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--S-----------------------------------------------------------------------------
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--------S-----------------------------------------------------SSSSSSSSS---------
---S-----------------------------------S----------------------------------------
--------------------------------S------------------------S----------------------
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---------------S----------S---------------------------------S-------------------
------------S-------------------------------------------------------------------
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-----------------S---------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSS---------------------------S----------SS---S----------------------S-------
------------S---------------S-------S--S----------------------------------------
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-------------------------------------S------------------------------------------
---------------------------------SSSSSS-S-SSSS--------------------S------S------
--------------------------------------------S-S---------------------------------
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----------------------------------------------S-S---------------------------S-S-
-S---------------------S-SS-S-----------S-----------------S---S-----------------
-------------------------------SSS-SSSS-----S-----S-------------S---------------
---S-----------------------------------------------------------------S----------
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---------------------------------------------S-------S------------------------
>forward_941
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-----------------------------------------GTCTGCCACCACTTCTGTCC-------------------
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>reverse_2353
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--------------------------------TGAAATCACACTCGCCGTCT----------------------------
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