Multiple sequence alignment - TraesCS4D01G285800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G285800 chr4D 100.000 2644 0 0 1 2644 456130284 456127641 0.000000e+00 4883.0
1 TraesCS4D01G285800 chr4D 94.444 36 0 1 2189 2222 480516162 480516197 1.000000e-03 54.7
2 TraesCS4D01G285800 chr4A 90.029 1384 74 29 700 2075 11599850 11601177 0.000000e+00 1733.0
3 TraesCS4D01G285800 chr4A 85.084 476 65 6 1 474 11580702 11581173 5.120000e-132 481.0
4 TraesCS4D01G285800 chr4A 89.855 207 12 6 479 685 11599667 11599864 9.390000e-65 257.0
5 TraesCS4D01G285800 chr4B 90.693 1010 60 20 700 1699 570348736 570347751 0.000000e+00 1314.0
6 TraesCS4D01G285800 chr4B 87.261 314 21 9 1749 2060 570347642 570347346 9.060000e-90 340.0
7 TraesCS4D01G285800 chr4B 78.727 550 86 17 2122 2644 593435102 593434557 3.260000e-89 339.0
8 TraesCS4D01G285800 chr4B 90.435 230 20 1 87 314 570349181 570348952 4.280000e-78 302.0
9 TraesCS4D01G285800 chr4B 83.732 209 14 5 477 685 570348910 570348722 2.090000e-41 180.0
10 TraesCS4D01G285800 chr4B 86.598 97 10 3 339 434 382202506 382202412 1.290000e-18 104.0
11 TraesCS4D01G285800 chr4B 91.071 56 5 0 1 56 570349237 570349182 2.820000e-10 76.8
12 TraesCS4D01G285800 chr7B 81.263 491 60 21 2125 2603 147660621 147660151 4.160000e-98 368.0
13 TraesCS4D01G285800 chr7B 77.670 206 30 13 2449 2644 724932787 724932588 7.740000e-21 111.0
14 TraesCS4D01G285800 chr7B 89.130 46 2 3 2483 2527 232397695 232397652 1.000000e-03 54.7
15 TraesCS4D01G285800 chr2B 78.393 560 61 23 2125 2644 569126109 569126648 2.560000e-80 309.0
16 TraesCS4D01G285800 chr2B 82.828 99 14 2 338 434 568750177 568750080 4.690000e-13 86.1
17 TraesCS4D01G285800 chr3A 77.106 546 75 21 2125 2644 45585616 45585095 1.210000e-68 270.0
18 TraesCS4D01G285800 chr3A 78.060 433 61 13 2177 2592 720619899 720619484 2.630000e-60 243.0
19 TraesCS4D01G285800 chr1D 77.096 489 72 21 2125 2603 469816307 469815849 2.030000e-61 246.0
20 TraesCS4D01G285800 chr1D 82.171 129 20 3 2134 2261 371550348 371550222 1.000000e-19 108.0
21 TraesCS4D01G285800 chr1D 79.861 144 23 6 335 475 316296745 316296885 1.670000e-17 100.0
22 TraesCS4D01G285800 chr1D 84.694 98 13 2 338 434 316266670 316266766 2.170000e-16 97.1
23 TraesCS4D01G285800 chr7A 77.159 521 52 33 2136 2642 90373039 90373506 9.460000e-60 241.0
24 TraesCS4D01G285800 chr7A 83.902 205 30 3 2440 2644 90373308 90373107 2.690000e-45 193.0
25 TraesCS4D01G285800 chr7A 100.000 28 0 0 2083 2110 167827358 167827385 5.000000e-03 52.8
26 TraesCS4D01G285800 chr3D 82.168 286 44 6 2361 2641 304352122 304352405 3.400000e-59 239.0
27 TraesCS4D01G285800 chr3D 77.358 159 30 6 321 476 8384695 8384850 3.620000e-14 89.8
28 TraesCS4D01G285800 chr5A 82.292 288 37 11 2245 2520 558310449 558310734 1.220000e-58 237.0
29 TraesCS4D01G285800 chr5D 79.481 385 38 21 2125 2477 441916481 441916856 4.400000e-58 235.0
30 TraesCS4D01G285800 chr5D 78.590 383 48 19 2125 2498 413621552 413621195 3.430000e-54 222.0
31 TraesCS4D01G285800 chr5D 78.788 198 31 8 2125 2313 486018113 486017918 3.570000e-24 122.0
32 TraesCS4D01G285800 chr5D 84.000 100 13 2 335 433 490444028 490444125 2.800000e-15 93.5
33 TraesCS4D01G285800 chr6D 84.713 157 19 5 2449 2603 445913796 445913949 4.560000e-33 152.0
34 TraesCS4D01G285800 chr1B 83.673 98 14 2 338 434 190887893 190887797 1.010000e-14 91.6
35 TraesCS4D01G285800 chr1B 94.595 37 2 0 2076 2112 494242984 494243020 1.020000e-04 58.4
36 TraesCS4D01G285800 chr3B 78.621 145 20 10 338 477 594831457 594831319 4.690000e-13 86.1
37 TraesCS4D01G285800 chr6A 97.297 37 1 0 2074 2110 48089545 48089581 2.200000e-06 63.9
38 TraesCS4D01G285800 chr7D 94.286 35 2 0 2076 2110 166257916 166257950 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G285800 chr4D 456127641 456130284 2643 True 4883.00 4883 100.0000 1 2644 1 chr4D.!!$R1 2643
1 TraesCS4D01G285800 chr4A 11599667 11601177 1510 False 995.00 1733 89.9420 479 2075 2 chr4A.!!$F2 1596
2 TraesCS4D01G285800 chr4B 570347346 570349237 1891 True 442.56 1314 88.6384 1 2060 5 chr4B.!!$R3 2059
3 TraesCS4D01G285800 chr4B 593434557 593435102 545 True 339.00 339 78.7270 2122 2644 1 chr4B.!!$R2 522
4 TraesCS4D01G285800 chr2B 569126109 569126648 539 False 309.00 309 78.3930 2125 2644 1 chr2B.!!$F1 519
5 TraesCS4D01G285800 chr3A 45585095 45585616 521 True 270.00 270 77.1060 2125 2644 1 chr3A.!!$R1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.032615 ATTGAGAGAGCGTCCCTCCT 60.033 55.0 0.0 0.0 41.74 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2011 2094 0.034337 TTGTCTCGTTAGGCACCCAC 59.966 55.0 0.0 0.0 36.97 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.785041 CGGGCTTACGGGCATCATTG 61.785 60.000 0.00 0.00 42.84 2.82
48 49 0.947244 GGCTTACGGGCATCATTGAG 59.053 55.000 0.00 0.00 40.53 3.02
53 54 0.179062 ACGGGCATCATTGAGAGAGC 60.179 55.000 0.00 0.00 0.00 4.09
56 57 1.216122 GGCATCATTGAGAGAGCGTC 58.784 55.000 0.00 0.00 33.43 5.19
57 58 1.216122 GCATCATTGAGAGAGCGTCC 58.784 55.000 0.00 0.00 0.00 4.79
58 59 1.863267 CATCATTGAGAGAGCGTCCC 58.137 55.000 0.00 0.00 0.00 4.46
59 60 1.411977 CATCATTGAGAGAGCGTCCCT 59.588 52.381 0.00 0.00 0.00 4.20
60 61 1.107114 TCATTGAGAGAGCGTCCCTC 58.893 55.000 0.00 0.00 41.07 4.30
61 62 0.103937 CATTGAGAGAGCGTCCCTCC 59.896 60.000 0.00 0.00 41.74 4.30
62 63 0.032615 ATTGAGAGAGCGTCCCTCCT 60.033 55.000 0.00 0.00 41.74 3.69
63 64 0.251832 TTGAGAGAGCGTCCCTCCTT 60.252 55.000 0.00 0.00 41.74 3.36
64 65 0.624254 TGAGAGAGCGTCCCTCCTTA 59.376 55.000 0.00 0.00 41.74 2.69
65 66 1.314730 GAGAGAGCGTCCCTCCTTAG 58.685 60.000 0.00 0.00 41.74 2.18
66 67 0.626916 AGAGAGCGTCCCTCCTTAGT 59.373 55.000 0.00 0.00 41.74 2.24
67 68 1.006162 AGAGAGCGTCCCTCCTTAGTT 59.994 52.381 0.00 0.00 41.74 2.24
68 69 1.406180 GAGAGCGTCCCTCCTTAGTTC 59.594 57.143 0.00 0.00 41.74 3.01
69 70 1.183549 GAGCGTCCCTCCTTAGTTCA 58.816 55.000 0.00 0.00 34.35 3.18
70 71 1.757699 GAGCGTCCCTCCTTAGTTCAT 59.242 52.381 0.00 0.00 34.35 2.57
71 72 2.168728 GAGCGTCCCTCCTTAGTTCATT 59.831 50.000 0.00 0.00 34.35 2.57
72 73 2.168728 AGCGTCCCTCCTTAGTTCATTC 59.831 50.000 0.00 0.00 0.00 2.67
73 74 2.093658 GCGTCCCTCCTTAGTTCATTCA 60.094 50.000 0.00 0.00 0.00 2.57
74 75 3.786635 CGTCCCTCCTTAGTTCATTCAG 58.213 50.000 0.00 0.00 0.00 3.02
75 76 3.430929 CGTCCCTCCTTAGTTCATTCAGG 60.431 52.174 0.00 0.00 0.00 3.86
76 77 3.519913 GTCCCTCCTTAGTTCATTCAGGT 59.480 47.826 0.00 0.00 0.00 4.00
77 78 4.715297 GTCCCTCCTTAGTTCATTCAGGTA 59.285 45.833 0.00 0.00 0.00 3.08
78 79 4.715297 TCCCTCCTTAGTTCATTCAGGTAC 59.285 45.833 0.00 0.00 0.00 3.34
79 80 4.717280 CCCTCCTTAGTTCATTCAGGTACT 59.283 45.833 0.00 0.00 43.88 2.73
80 81 5.163395 CCCTCCTTAGTTCATTCAGGTACTC 60.163 48.000 0.00 0.00 34.60 2.59
81 82 5.450688 CCTCCTTAGTTCATTCAGGTACTCG 60.451 48.000 0.00 0.00 34.60 4.18
82 83 5.258841 TCCTTAGTTCATTCAGGTACTCGA 58.741 41.667 0.00 0.00 34.60 4.04
83 84 5.892119 TCCTTAGTTCATTCAGGTACTCGAT 59.108 40.000 0.00 0.00 34.60 3.59
84 85 7.058525 TCCTTAGTTCATTCAGGTACTCGATA 58.941 38.462 0.00 0.00 34.60 2.92
85 86 7.228906 TCCTTAGTTCATTCAGGTACTCGATAG 59.771 40.741 0.00 0.00 34.60 2.08
133 134 2.027625 GTCGCGGTTGTCAAGGAGG 61.028 63.158 6.13 0.00 0.00 4.30
145 146 1.155390 AAGGAGGACTCGGACCACA 59.845 57.895 0.00 0.00 0.00 4.17
148 149 1.606889 GAGGACTCGGACCACACCT 60.607 63.158 0.00 0.00 0.00 4.00
165 166 0.460284 CCTTCGAATGAGGGTGGTCG 60.460 60.000 0.00 0.00 36.63 4.79
262 263 6.127225 TGCCCTATTTTACATTATTTGCTGCA 60.127 34.615 0.00 0.00 0.00 4.41
263 264 6.421801 GCCCTATTTTACATTATTTGCTGCAG 59.578 38.462 10.11 10.11 0.00 4.41
264 265 7.491682 CCCTATTTTACATTATTTGCTGCAGT 58.508 34.615 16.64 0.00 0.00 4.40
274 275 9.874205 ACATTATTTGCTGCAGTATAAAATTGT 57.126 25.926 16.64 13.93 0.00 2.71
290 293 3.866883 ATTGTTGATGCCCTAAAACCG 57.133 42.857 0.00 0.00 0.00 4.44
293 296 1.471287 GTTGATGCCCTAAAACCGTCC 59.529 52.381 0.00 0.00 0.00 4.79
296 299 0.255033 ATGCCCTAAAACCGTCCCTC 59.745 55.000 0.00 0.00 0.00 4.30
307 310 2.128507 CGTCCCTCTCCTGCCCTAC 61.129 68.421 0.00 0.00 0.00 3.18
309 312 1.001760 TCCCTCTCCTGCCCTACAC 59.998 63.158 0.00 0.00 0.00 2.90
314 317 2.467880 CTCTCCTGCCCTACACCTTTA 58.532 52.381 0.00 0.00 0.00 1.85
316 319 3.456277 CTCTCCTGCCCTACACCTTTATT 59.544 47.826 0.00 0.00 0.00 1.40
317 320 3.850173 TCTCCTGCCCTACACCTTTATTT 59.150 43.478 0.00 0.00 0.00 1.40
318 321 4.291249 TCTCCTGCCCTACACCTTTATTTT 59.709 41.667 0.00 0.00 0.00 1.82
320 323 6.012333 TCTCCTGCCCTACACCTTTATTTTAA 60.012 38.462 0.00 0.00 0.00 1.52
321 324 5.947566 TCCTGCCCTACACCTTTATTTTAAC 59.052 40.000 0.00 0.00 0.00 2.01
322 325 5.163693 CCTGCCCTACACCTTTATTTTAACG 60.164 44.000 0.00 0.00 0.00 3.18
323 326 5.558818 TGCCCTACACCTTTATTTTAACGA 58.441 37.500 0.00 0.00 0.00 3.85
324 327 5.644636 TGCCCTACACCTTTATTTTAACGAG 59.355 40.000 0.00 0.00 0.00 4.18
326 329 5.065602 CCCTACACCTTTATTTTAACGAGGC 59.934 44.000 0.00 0.00 0.00 4.70
327 330 5.644636 CCTACACCTTTATTTTAACGAGGCA 59.355 40.000 0.00 0.00 0.00 4.75
329 332 6.190954 ACACCTTTATTTTAACGAGGCATC 57.809 37.500 0.00 0.00 0.00 3.91
332 335 5.944007 ACCTTTATTTTAACGAGGCATCTGT 59.056 36.000 0.00 0.00 0.00 3.41
334 337 5.712217 TTATTTTAACGAGGCATCTGTCG 57.288 39.130 0.00 0.00 42.04 4.35
340 343 2.279582 CGAGGCATCTGTCGTTACTT 57.720 50.000 0.00 0.00 0.00 2.24
344 347 2.751259 AGGCATCTGTCGTTACTTCGTA 59.249 45.455 0.00 0.00 0.00 3.43
345 348 3.192001 AGGCATCTGTCGTTACTTCGTAA 59.808 43.478 0.00 0.00 0.00 3.18
346 349 3.922240 GGCATCTGTCGTTACTTCGTAAA 59.078 43.478 0.00 0.00 29.42 2.01
347 350 4.386652 GGCATCTGTCGTTACTTCGTAAAA 59.613 41.667 0.00 0.00 29.42 1.52
348 351 5.063060 GGCATCTGTCGTTACTTCGTAAAAT 59.937 40.000 0.00 0.00 29.42 1.82
351 354 7.219535 GCATCTGTCGTTACTTCGTAAAATCTA 59.780 37.037 0.00 0.00 29.42 1.98
352 355 9.069078 CATCTGTCGTTACTTCGTAAAATCTAA 57.931 33.333 0.00 0.00 29.42 2.10
353 356 8.665175 TCTGTCGTTACTTCGTAAAATCTAAG 57.335 34.615 0.00 0.00 29.42 2.18
354 357 7.752239 TCTGTCGTTACTTCGTAAAATCTAAGG 59.248 37.037 0.00 0.00 29.42 2.69
355 358 7.592938 TGTCGTTACTTCGTAAAATCTAAGGA 58.407 34.615 0.00 0.00 29.42 3.36
356 359 8.246180 TGTCGTTACTTCGTAAAATCTAAGGAT 58.754 33.333 0.00 0.00 29.42 3.24
357 360 8.529911 GTCGTTACTTCGTAAAATCTAAGGATG 58.470 37.037 0.00 0.00 29.42 3.51
358 361 7.221452 TCGTTACTTCGTAAAATCTAAGGATGC 59.779 37.037 0.00 0.00 29.42 3.91
359 362 7.222224 CGTTACTTCGTAAAATCTAAGGATGCT 59.778 37.037 0.00 0.00 29.42 3.79
360 363 9.525409 GTTACTTCGTAAAATCTAAGGATGCTA 57.475 33.333 0.00 0.00 29.42 3.49
362 365 8.594881 ACTTCGTAAAATCTAAGGATGCTATG 57.405 34.615 0.00 0.00 31.75 2.23
363 366 7.171678 ACTTCGTAAAATCTAAGGATGCTATGC 59.828 37.037 0.00 0.00 31.75 3.14
364 367 6.759272 TCGTAAAATCTAAGGATGCTATGCT 58.241 36.000 0.00 0.00 31.75 3.79
365 368 6.646653 TCGTAAAATCTAAGGATGCTATGCTG 59.353 38.462 0.00 0.00 31.75 4.41
366 369 6.128445 CGTAAAATCTAAGGATGCTATGCTGG 60.128 42.308 0.00 0.00 31.75 4.85
367 370 2.847327 TCTAAGGATGCTATGCTGGC 57.153 50.000 0.00 0.00 0.00 4.85
368 371 2.333069 TCTAAGGATGCTATGCTGGCT 58.667 47.619 0.00 0.00 0.00 4.75
369 372 2.301296 TCTAAGGATGCTATGCTGGCTC 59.699 50.000 0.00 0.00 0.00 4.70
370 373 0.841961 AAGGATGCTATGCTGGCTCA 59.158 50.000 0.00 0.00 0.00 4.26
371 374 0.397187 AGGATGCTATGCTGGCTCAG 59.603 55.000 0.00 0.00 34.12 3.35
372 375 0.108207 GGATGCTATGCTGGCTCAGT 59.892 55.000 4.45 0.00 33.43 3.41
373 376 1.510776 GATGCTATGCTGGCTCAGTC 58.489 55.000 4.45 0.00 33.43 3.51
374 377 1.070445 GATGCTATGCTGGCTCAGTCT 59.930 52.381 4.45 0.00 33.43 3.24
375 378 0.907486 TGCTATGCTGGCTCAGTCTT 59.093 50.000 4.45 0.00 33.43 3.01
376 379 1.280133 TGCTATGCTGGCTCAGTCTTT 59.720 47.619 4.45 0.00 33.43 2.52
377 380 1.939255 GCTATGCTGGCTCAGTCTTTC 59.061 52.381 4.45 0.00 33.43 2.62
378 381 2.200067 CTATGCTGGCTCAGTCTTTCG 58.800 52.381 4.45 0.00 33.43 3.46
379 382 0.610174 ATGCTGGCTCAGTCTTTCGA 59.390 50.000 4.45 0.00 33.43 3.71
380 383 0.392706 TGCTGGCTCAGTCTTTCGAA 59.607 50.000 0.00 0.00 33.43 3.71
381 384 1.074752 GCTGGCTCAGTCTTTCGAAG 58.925 55.000 0.00 0.00 33.43 3.79
382 385 1.337260 GCTGGCTCAGTCTTTCGAAGA 60.337 52.381 0.00 0.00 33.43 2.87
383 386 2.676463 GCTGGCTCAGTCTTTCGAAGAT 60.676 50.000 0.00 0.00 40.18 2.40
384 387 2.928757 CTGGCTCAGTCTTTCGAAGATG 59.071 50.000 0.00 0.00 40.18 2.90
385 388 1.663135 GGCTCAGTCTTTCGAAGATGC 59.337 52.381 0.00 0.00 40.18 3.91
386 389 2.615869 GCTCAGTCTTTCGAAGATGCT 58.384 47.619 0.00 0.00 40.18 3.79
387 390 2.602660 GCTCAGTCTTTCGAAGATGCTC 59.397 50.000 0.00 0.00 40.18 4.26
388 391 3.842820 CTCAGTCTTTCGAAGATGCTCA 58.157 45.455 0.00 0.00 40.18 4.26
389 392 4.431809 CTCAGTCTTTCGAAGATGCTCAT 58.568 43.478 0.00 0.00 40.18 2.90
390 393 5.582689 TCAGTCTTTCGAAGATGCTCATA 57.417 39.130 0.00 0.00 40.18 2.15
391 394 5.586339 TCAGTCTTTCGAAGATGCTCATAG 58.414 41.667 0.00 0.00 40.18 2.23
392 395 4.744137 CAGTCTTTCGAAGATGCTCATAGG 59.256 45.833 0.00 0.00 40.18 2.57
393 396 3.492756 GTCTTTCGAAGATGCTCATAGGC 59.507 47.826 0.00 0.00 40.18 3.93
394 397 2.140065 TTCGAAGATGCTCATAGGCG 57.860 50.000 0.00 0.00 35.04 5.52
395 398 1.032794 TCGAAGATGCTCATAGGCGT 58.967 50.000 0.00 0.00 34.52 5.68
396 399 2.227194 TCGAAGATGCTCATAGGCGTA 58.773 47.619 0.00 0.00 34.52 4.42
397 400 2.226674 TCGAAGATGCTCATAGGCGTAG 59.773 50.000 0.00 0.00 34.52 3.51
398 401 2.226674 CGAAGATGCTCATAGGCGTAGA 59.773 50.000 0.00 0.00 34.52 2.59
399 402 3.669290 CGAAGATGCTCATAGGCGTAGAG 60.669 52.174 7.91 7.91 34.52 2.43
400 403 2.870175 AGATGCTCATAGGCGTAGAGT 58.130 47.619 11.75 0.00 34.52 3.24
401 404 4.022413 AGATGCTCATAGGCGTAGAGTA 57.978 45.455 11.75 9.11 34.52 2.59
402 405 4.594970 AGATGCTCATAGGCGTAGAGTAT 58.405 43.478 12.54 12.54 37.41 2.12
403 406 4.397730 AGATGCTCATAGGCGTAGAGTATG 59.602 45.833 15.49 1.88 35.35 2.39
404 407 2.229062 TGCTCATAGGCGTAGAGTATGC 59.771 50.000 11.75 0.00 39.95 3.14
405 408 2.729467 GCTCATAGGCGTAGAGTATGCG 60.729 54.545 11.75 0.00 41.57 4.73
406 409 2.484651 CTCATAGGCGTAGAGTATGCGT 59.515 50.000 0.00 0.00 41.57 5.24
407 410 2.225727 TCATAGGCGTAGAGTATGCGTG 59.774 50.000 0.00 0.00 41.57 5.34
408 411 0.309922 TAGGCGTAGAGTATGCGTGC 59.690 55.000 0.00 0.00 41.57 5.34
409 412 1.226859 GGCGTAGAGTATGCGTGCA 60.227 57.895 0.00 0.00 41.57 4.57
410 413 0.597637 GGCGTAGAGTATGCGTGCAT 60.598 55.000 12.54 12.54 41.57 3.96
411 414 0.504384 GCGTAGAGTATGCGTGCATG 59.496 55.000 17.21 0.09 39.47 4.06
412 415 1.840181 CGTAGAGTATGCGTGCATGT 58.160 50.000 17.21 4.51 37.82 3.21
413 416 1.518515 CGTAGAGTATGCGTGCATGTG 59.481 52.381 17.21 0.00 37.82 3.21
414 417 2.540515 GTAGAGTATGCGTGCATGTGT 58.459 47.619 17.21 5.86 37.82 3.72
415 418 2.099141 AGAGTATGCGTGCATGTGTT 57.901 45.000 17.21 0.35 37.82 3.32
416 419 2.426522 AGAGTATGCGTGCATGTGTTT 58.573 42.857 17.21 0.00 37.82 2.83
417 420 3.595173 AGAGTATGCGTGCATGTGTTTA 58.405 40.909 17.21 0.00 37.82 2.01
418 421 4.191544 AGAGTATGCGTGCATGTGTTTAT 58.808 39.130 17.21 0.00 37.82 1.40
419 422 5.356426 AGAGTATGCGTGCATGTGTTTATA 58.644 37.500 17.21 0.00 37.82 0.98
420 423 5.463392 AGAGTATGCGTGCATGTGTTTATAG 59.537 40.000 17.21 0.00 37.82 1.31
421 424 3.969117 ATGCGTGCATGTGTTTATAGG 57.031 42.857 6.53 0.00 35.03 2.57
422 425 2.979240 TGCGTGCATGTGTTTATAGGA 58.021 42.857 7.93 0.00 0.00 2.94
423 426 3.540617 TGCGTGCATGTGTTTATAGGAT 58.459 40.909 7.93 0.00 0.00 3.24
424 427 3.312146 TGCGTGCATGTGTTTATAGGATG 59.688 43.478 7.93 0.00 0.00 3.51
425 428 3.559655 GCGTGCATGTGTTTATAGGATGA 59.440 43.478 7.93 0.00 0.00 2.92
426 429 4.319046 GCGTGCATGTGTTTATAGGATGAG 60.319 45.833 7.93 0.00 0.00 2.90
427 430 4.811024 CGTGCATGTGTTTATAGGATGAGT 59.189 41.667 0.00 0.00 0.00 3.41
428 431 5.277011 CGTGCATGTGTTTATAGGATGAGTG 60.277 44.000 0.00 0.00 0.00 3.51
429 432 5.586243 GTGCATGTGTTTATAGGATGAGTGT 59.414 40.000 0.00 0.00 0.00 3.55
430 433 6.761242 GTGCATGTGTTTATAGGATGAGTGTA 59.239 38.462 0.00 0.00 0.00 2.90
431 434 7.442364 GTGCATGTGTTTATAGGATGAGTGTAT 59.558 37.037 0.00 0.00 0.00 2.29
432 435 7.442062 TGCATGTGTTTATAGGATGAGTGTATG 59.558 37.037 0.00 0.00 0.00 2.39
433 436 7.571983 GCATGTGTTTATAGGATGAGTGTATGC 60.572 40.741 0.00 0.00 0.00 3.14
434 437 7.124573 TGTGTTTATAGGATGAGTGTATGCT 57.875 36.000 0.00 0.00 33.12 3.79
435 438 7.564793 TGTGTTTATAGGATGAGTGTATGCTT 58.435 34.615 0.00 0.00 30.91 3.91
436 439 7.710907 TGTGTTTATAGGATGAGTGTATGCTTC 59.289 37.037 0.00 0.00 30.91 3.86
437 440 7.710907 GTGTTTATAGGATGAGTGTATGCTTCA 59.289 37.037 0.00 0.00 30.91 3.02
438 441 8.432013 TGTTTATAGGATGAGTGTATGCTTCAT 58.568 33.333 2.13 2.13 30.91 2.57
439 442 9.277783 GTTTATAGGATGAGTGTATGCTTCATT 57.722 33.333 3.71 0.00 30.91 2.57
440 443 8.837788 TTATAGGATGAGTGTATGCTTCATTG 57.162 34.615 3.71 0.00 30.91 2.82
441 444 5.108187 AGGATGAGTGTATGCTTCATTGT 57.892 39.130 3.71 0.00 0.00 2.71
442 445 4.880120 AGGATGAGTGTATGCTTCATTGTG 59.120 41.667 3.71 0.00 0.00 3.33
443 446 4.637534 GGATGAGTGTATGCTTCATTGTGT 59.362 41.667 3.71 0.00 0.00 3.72
444 447 5.448225 GGATGAGTGTATGCTTCATTGTGTG 60.448 44.000 3.71 0.00 0.00 3.82
445 448 4.640364 TGAGTGTATGCTTCATTGTGTGA 58.360 39.130 0.00 0.00 34.25 3.58
446 449 4.692155 TGAGTGTATGCTTCATTGTGTGAG 59.308 41.667 0.00 0.00 38.29 3.51
447 450 3.438087 AGTGTATGCTTCATTGTGTGAGC 59.562 43.478 0.00 0.00 38.29 4.26
448 451 2.416202 TGTATGCTTCATTGTGTGAGCG 59.584 45.455 0.00 0.00 38.29 5.03
449 452 1.812235 ATGCTTCATTGTGTGAGCGA 58.188 45.000 0.00 0.00 38.29 4.93
450 453 0.867746 TGCTTCATTGTGTGAGCGAC 59.132 50.000 0.00 0.00 38.29 5.19
451 454 1.151668 GCTTCATTGTGTGAGCGACT 58.848 50.000 0.00 0.00 38.29 4.18
452 455 1.532868 GCTTCATTGTGTGAGCGACTT 59.467 47.619 0.00 0.00 38.29 3.01
453 456 2.031682 GCTTCATTGTGTGAGCGACTTT 60.032 45.455 0.00 0.00 38.29 2.66
454 457 3.186409 GCTTCATTGTGTGAGCGACTTTA 59.814 43.478 0.00 0.00 38.29 1.85
455 458 4.319477 GCTTCATTGTGTGAGCGACTTTAA 60.319 41.667 0.00 0.00 38.29 1.52
456 459 5.617751 GCTTCATTGTGTGAGCGACTTTAAT 60.618 40.000 0.00 0.00 38.29 1.40
457 460 5.940192 TCATTGTGTGAGCGACTTTAATT 57.060 34.783 0.00 0.00 31.80 1.40
458 461 5.688823 TCATTGTGTGAGCGACTTTAATTG 58.311 37.500 0.00 0.00 31.80 2.32
459 462 5.238432 TCATTGTGTGAGCGACTTTAATTGT 59.762 36.000 0.00 0.00 31.80 2.71
460 463 6.425417 TCATTGTGTGAGCGACTTTAATTGTA 59.575 34.615 0.00 0.00 31.80 2.41
461 464 6.795098 TTGTGTGAGCGACTTTAATTGTAT 57.205 33.333 0.00 0.00 0.00 2.29
462 465 6.403333 TGTGTGAGCGACTTTAATTGTATC 57.597 37.500 0.00 0.00 0.00 2.24
463 466 5.061684 TGTGTGAGCGACTTTAATTGTATCG 59.938 40.000 0.00 0.00 35.91 2.92
464 467 5.061808 GTGTGAGCGACTTTAATTGTATCGT 59.938 40.000 0.00 0.00 35.27 3.73
465 468 5.061684 TGTGAGCGACTTTAATTGTATCGTG 59.938 40.000 0.00 0.00 35.27 4.35
466 469 5.061808 GTGAGCGACTTTAATTGTATCGTGT 59.938 40.000 0.00 0.00 35.27 4.49
467 470 5.636121 TGAGCGACTTTAATTGTATCGTGTT 59.364 36.000 0.00 0.00 35.27 3.32
468 471 6.807720 TGAGCGACTTTAATTGTATCGTGTTA 59.192 34.615 0.00 0.00 35.27 2.41
469 472 7.328982 TGAGCGACTTTAATTGTATCGTGTTAA 59.671 33.333 0.00 0.00 35.27 2.01
470 473 8.020861 AGCGACTTTAATTGTATCGTGTTAAA 57.979 30.769 0.00 0.00 35.27 1.52
471 474 8.497554 AGCGACTTTAATTGTATCGTGTTAAAA 58.502 29.630 0.00 0.00 35.27 1.52
472 475 9.105206 GCGACTTTAATTGTATCGTGTTAAAAA 57.895 29.630 0.00 0.00 35.27 1.94
494 497 1.589803 ATAAAGCCGTGTTATCCGCC 58.410 50.000 0.00 0.00 0.00 6.13
607 610 4.295119 ACTCGTGCCCGTGTGTCC 62.295 66.667 0.00 0.00 39.16 4.02
611 614 4.595538 GTGCCCGTGTGTCCGTGA 62.596 66.667 0.00 0.00 0.00 4.35
612 615 3.621805 TGCCCGTGTGTCCGTGAT 61.622 61.111 0.00 0.00 0.00 3.06
619 622 1.601914 CGTGTGTCCGTGATGAACAGA 60.602 52.381 0.00 0.00 0.00 3.41
640 643 3.625897 CCACTCCGTCCCAGTGCA 61.626 66.667 0.00 0.00 40.10 4.57
681 684 1.466167 GCCTACACGTCTCGACAACTA 59.534 52.381 0.00 0.00 0.00 2.24
682 685 2.727298 GCCTACACGTCTCGACAACTAC 60.727 54.545 0.00 0.00 0.00 2.73
683 686 2.740981 CCTACACGTCTCGACAACTACT 59.259 50.000 0.00 0.00 0.00 2.57
684 687 3.188048 CCTACACGTCTCGACAACTACTT 59.812 47.826 0.00 0.00 0.00 2.24
685 688 3.705043 ACACGTCTCGACAACTACTTT 57.295 42.857 0.00 0.00 0.00 2.66
686 689 4.037858 ACACGTCTCGACAACTACTTTT 57.962 40.909 0.00 0.00 0.00 2.27
687 690 4.427312 ACACGTCTCGACAACTACTTTTT 58.573 39.130 0.00 0.00 0.00 1.94
709 712 4.487714 TTTTAGGATCATCTCGGCAACT 57.512 40.909 0.00 0.00 0.00 3.16
725 728 5.857822 GGCAACTACTTGACGAGTTATTT 57.142 39.130 0.00 0.00 39.86 1.40
779 782 2.866762 GAGACGAAATCGATGGAAAGGG 59.133 50.000 10.16 0.00 43.02 3.95
867 871 2.359975 CCGCCTGTCCCTTTCCAC 60.360 66.667 0.00 0.00 0.00 4.02
928 932 4.504916 CGAGACGGCCAGCTCCAG 62.505 72.222 14.36 0.56 0.00 3.86
1018 1022 4.278513 CCCACTCCCACGCCCAAA 62.279 66.667 0.00 0.00 0.00 3.28
1056 1060 0.390472 GCAGAGGAGTCCAAGAACCG 60.390 60.000 12.86 0.00 0.00 4.44
1079 1083 0.955919 CACCGAGGAAAGGAAGCACC 60.956 60.000 0.00 0.00 39.35 5.01
1476 1486 4.049869 CTGAAGACCATCATCTCATCACG 58.950 47.826 0.00 0.00 0.00 4.35
1556 1566 3.084070 TGCTAGTGTGCATAGTGATCG 57.916 47.619 0.29 0.00 38.12 3.69
1557 1567 2.687935 TGCTAGTGTGCATAGTGATCGA 59.312 45.455 0.29 0.00 38.12 3.59
1558 1568 3.319122 TGCTAGTGTGCATAGTGATCGAT 59.681 43.478 0.00 0.00 38.12 3.59
1559 1569 3.672397 GCTAGTGTGCATAGTGATCGATG 59.328 47.826 0.54 0.00 0.00 3.84
1560 1570 4.557496 GCTAGTGTGCATAGTGATCGATGA 60.557 45.833 0.54 0.00 0.00 2.92
1561 1571 4.391405 AGTGTGCATAGTGATCGATGAA 57.609 40.909 0.54 0.00 0.00 2.57
1602 1612 5.465724 AGGTTACGACAGTGAGATGAAAAAC 59.534 40.000 0.00 0.00 0.00 2.43
1675 1694 0.450983 GCATTGCAGCTGTCTTCCTC 59.549 55.000 16.64 0.00 0.00 3.71
1721 1754 4.572909 TCTGAACATTGTGATCTCCTGTG 58.427 43.478 0.00 0.00 0.00 3.66
1723 1756 2.119801 ACATTGTGATCTCCTGTGCC 57.880 50.000 0.00 0.00 0.00 5.01
1734 1768 1.815003 CTCCTGTGCCTTTTCCATCAC 59.185 52.381 0.00 0.00 0.00 3.06
1814 1893 2.981805 CGGCAAGAACATGTCAATTGTG 59.018 45.455 5.13 0.00 0.00 3.33
1822 1904 2.029649 ACATGTCAATTGTGAGCTTGCC 60.030 45.455 5.13 0.00 33.27 4.52
1824 1906 0.109597 GTCAATTGTGAGCTTGCCCG 60.110 55.000 5.13 0.00 33.27 6.13
1841 1923 2.836154 GGAAGCCGGGCCATGATA 59.164 61.111 17.02 0.00 0.00 2.15
1842 1924 1.380302 GGAAGCCGGGCCATGATAT 59.620 57.895 17.02 0.00 0.00 1.63
1843 1925 0.618458 GGAAGCCGGGCCATGATATA 59.382 55.000 17.02 0.00 0.00 0.86
1844 1926 1.679032 GGAAGCCGGGCCATGATATAC 60.679 57.143 17.02 0.00 0.00 1.47
1845 1927 1.003118 GAAGCCGGGCCATGATATACA 59.997 52.381 17.02 0.00 0.00 2.29
1846 1928 0.615331 AGCCGGGCCATGATATACAG 59.385 55.000 17.02 0.00 0.00 2.74
1946 2029 0.248743 GATGGAACCATCGTCGCGTA 60.249 55.000 16.46 0.00 42.55 4.42
1947 2030 0.526954 ATGGAACCATCGTCGCGTAC 60.527 55.000 5.77 1.94 29.42 3.67
1948 2031 1.138247 GGAACCATCGTCGCGTACT 59.862 57.895 5.77 0.00 0.00 2.73
1949 2032 1.138047 GGAACCATCGTCGCGTACTG 61.138 60.000 5.77 0.00 0.00 2.74
1950 2033 1.138047 GAACCATCGTCGCGTACTGG 61.138 60.000 5.77 11.77 0.00 4.00
1951 2034 2.954868 CCATCGTCGCGTACTGGC 60.955 66.667 5.77 0.00 0.00 4.85
1996 2079 4.767928 ACATGCCGAGTTTTATAAACCCAA 59.232 37.500 0.00 0.00 0.00 4.12
2000 2083 4.023021 GCCGAGTTTTATAAACCCAACACA 60.023 41.667 0.00 0.00 0.00 3.72
2065 2148 3.678806 CGCTACTTCCAGGCAAGAACATA 60.679 47.826 5.84 0.00 0.00 2.29
2075 2158 2.095919 GGCAAGAACATACGTTGGTGTC 60.096 50.000 0.00 0.00 34.75 3.67
2076 2159 2.546368 GCAAGAACATACGTTGGTGTCA 59.454 45.455 0.00 0.00 34.75 3.58
2077 2160 3.363970 GCAAGAACATACGTTGGTGTCAG 60.364 47.826 0.00 0.00 34.75 3.51
2078 2161 3.746045 AGAACATACGTTGGTGTCAGT 57.254 42.857 0.00 0.00 34.75 3.41
2079 2162 3.390135 AGAACATACGTTGGTGTCAGTG 58.610 45.455 0.00 0.00 34.75 3.66
2080 2163 2.902705 ACATACGTTGGTGTCAGTGT 57.097 45.000 0.00 0.00 0.00 3.55
2081 2164 2.750948 ACATACGTTGGTGTCAGTGTC 58.249 47.619 0.00 0.00 0.00 3.67
2082 2165 1.719246 CATACGTTGGTGTCAGTGTCG 59.281 52.381 0.00 0.00 0.00 4.35
2083 2166 0.031043 TACGTTGGTGTCAGTGTCGG 59.969 55.000 0.00 0.00 0.00 4.79
2084 2167 1.066752 CGTTGGTGTCAGTGTCGGA 59.933 57.895 0.00 0.00 0.00 4.55
2085 2168 0.939577 CGTTGGTGTCAGTGTCGGAG 60.940 60.000 0.00 0.00 0.00 4.63
2086 2169 1.069090 TTGGTGTCAGTGTCGGAGC 59.931 57.895 0.00 0.00 0.00 4.70
2087 2170 2.048127 GGTGTCAGTGTCGGAGCC 60.048 66.667 0.00 0.00 0.00 4.70
2088 2171 2.734591 GTGTCAGTGTCGGAGCCA 59.265 61.111 0.00 0.00 0.00 4.75
2089 2172 1.373497 GTGTCAGTGTCGGAGCCAG 60.373 63.158 0.00 0.00 0.00 4.85
2090 2173 2.262915 GTCAGTGTCGGAGCCAGG 59.737 66.667 0.00 0.00 0.00 4.45
2091 2174 2.117423 TCAGTGTCGGAGCCAGGA 59.883 61.111 0.00 0.00 0.00 3.86
2092 2175 1.533033 TCAGTGTCGGAGCCAGGAA 60.533 57.895 0.00 0.00 0.00 3.36
2093 2176 0.904865 TCAGTGTCGGAGCCAGGAAT 60.905 55.000 0.00 0.00 0.00 3.01
2094 2177 0.036010 CAGTGTCGGAGCCAGGAATT 60.036 55.000 0.00 0.00 0.00 2.17
2095 2178 0.693049 AGTGTCGGAGCCAGGAATTT 59.307 50.000 0.00 0.00 0.00 1.82
2096 2179 0.804989 GTGTCGGAGCCAGGAATTTG 59.195 55.000 0.00 0.00 0.00 2.32
2097 2180 0.960364 TGTCGGAGCCAGGAATTTGC 60.960 55.000 0.00 0.00 0.00 3.68
2098 2181 0.678048 GTCGGAGCCAGGAATTTGCT 60.678 55.000 0.00 0.00 38.24 3.91
2102 2185 1.844687 GAGCCAGGAATTTGCTCCTT 58.155 50.000 0.00 0.00 43.76 3.36
2103 2186 1.475682 GAGCCAGGAATTTGCTCCTTG 59.524 52.381 0.00 0.00 43.76 3.61
2104 2187 0.533951 GCCAGGAATTTGCTCCTTGG 59.466 55.000 0.00 0.00 43.76 3.61
2105 2188 1.928868 CCAGGAATTTGCTCCTTGGT 58.071 50.000 0.00 0.00 43.76 3.67
2106 2189 2.883888 GCCAGGAATTTGCTCCTTGGTA 60.884 50.000 0.00 0.00 43.76 3.25
2107 2190 3.635591 CCAGGAATTTGCTCCTTGGTAT 58.364 45.455 0.00 0.00 43.76 2.73
2108 2191 4.026052 CCAGGAATTTGCTCCTTGGTATT 58.974 43.478 0.00 0.00 43.76 1.89
2109 2192 4.098501 CCAGGAATTTGCTCCTTGGTATTC 59.901 45.833 0.00 0.00 43.76 1.75
2110 2193 4.952335 CAGGAATTTGCTCCTTGGTATTCT 59.048 41.667 0.00 0.00 43.76 2.40
2111 2194 5.420104 CAGGAATTTGCTCCTTGGTATTCTT 59.580 40.000 0.00 0.00 43.76 2.52
2112 2195 6.019108 AGGAATTTGCTCCTTGGTATTCTTT 58.981 36.000 0.00 0.00 43.76 2.52
2113 2196 6.498303 AGGAATTTGCTCCTTGGTATTCTTTT 59.502 34.615 0.00 0.00 43.76 2.27
2114 2197 6.813649 GGAATTTGCTCCTTGGTATTCTTTTC 59.186 38.462 0.00 0.00 32.21 2.29
2115 2198 7.310052 GGAATTTGCTCCTTGGTATTCTTTTCT 60.310 37.037 0.00 0.00 32.21 2.52
2116 2199 6.976934 TTTGCTCCTTGGTATTCTTTTCTT 57.023 33.333 0.00 0.00 0.00 2.52
2117 2200 6.976934 TTGCTCCTTGGTATTCTTTTCTTT 57.023 33.333 0.00 0.00 0.00 2.52
2118 2201 6.976934 TGCTCCTTGGTATTCTTTTCTTTT 57.023 33.333 0.00 0.00 0.00 2.27
2119 2202 7.360113 TGCTCCTTGGTATTCTTTTCTTTTT 57.640 32.000 0.00 0.00 0.00 1.94
2120 2203 7.209475 TGCTCCTTGGTATTCTTTTCTTTTTG 58.791 34.615 0.00 0.00 0.00 2.44
2121 2204 7.069331 TGCTCCTTGGTATTCTTTTCTTTTTGA 59.931 33.333 0.00 0.00 0.00 2.69
2122 2205 7.926018 GCTCCTTGGTATTCTTTTCTTTTTGAA 59.074 33.333 0.00 0.00 0.00 2.69
2123 2206 9.816354 CTCCTTGGTATTCTTTTCTTTTTGAAA 57.184 29.630 0.00 0.00 42.33 2.69
2151 2234 5.127682 AGCATGTTTTTGGTCTCTCAAGTTT 59.872 36.000 0.00 0.00 0.00 2.66
2159 2243 5.248870 TGGTCTCTCAAGTTTTCAAAAGC 57.751 39.130 0.00 0.00 0.00 3.51
2185 2269 8.678199 CATAGACTTGGTCCCTTAAGATTTTTC 58.322 37.037 3.36 0.00 32.18 2.29
2191 2277 6.354130 TGGTCCCTTAAGATTTTTCGATAGG 58.646 40.000 3.36 0.00 0.00 2.57
2218 2304 3.053991 TGGTCCTTCAAGTCTCAAAACCA 60.054 43.478 0.00 0.00 32.13 3.67
2219 2305 3.951680 GGTCCTTCAAGTCTCAAAACCAA 59.048 43.478 0.00 0.00 0.00 3.67
2229 2315 8.744652 TCAAGTCTCAAAACCAAATAAGTTTGA 58.255 29.630 2.67 0.00 46.03 2.69
2233 2319 7.326063 GTCTCAAAACCAAATAAGTTTGATCCG 59.674 37.037 2.67 0.00 46.03 4.18
2238 2324 5.695818 ACCAAATAAGTTTGATCCGAAACG 58.304 37.500 2.67 0.00 46.03 3.60
2246 2332 6.313744 AGTTTGATCCGAAACGAGATTTTT 57.686 33.333 0.00 0.00 40.20 1.94
2247 2333 6.142817 AGTTTGATCCGAAACGAGATTTTTG 58.857 36.000 0.00 0.00 40.20 2.44
2248 2334 5.933187 TTGATCCGAAACGAGATTTTTGA 57.067 34.783 0.00 0.00 0.00 2.69
2249 2335 5.530519 TGATCCGAAACGAGATTTTTGAG 57.469 39.130 0.00 0.00 0.00 3.02
2250 2336 3.806316 TCCGAAACGAGATTTTTGAGC 57.194 42.857 0.00 0.00 0.00 4.26
2251 2337 3.135225 TCCGAAACGAGATTTTTGAGCA 58.865 40.909 0.00 0.00 0.00 4.26
2252 2338 3.059188 TCCGAAACGAGATTTTTGAGCAC 60.059 43.478 0.00 0.00 0.00 4.40
2253 2339 2.896410 CGAAACGAGATTTTTGAGCACG 59.104 45.455 0.00 0.00 33.91 5.34
2261 2356 0.248296 TTTTTGAGCACGTTGACCGC 60.248 50.000 0.00 0.00 41.42 5.68
2270 2365 2.241880 CGTTGACCGCGTTTGACCT 61.242 57.895 4.92 0.00 0.00 3.85
2271 2366 1.278637 GTTGACCGCGTTTGACCTG 59.721 57.895 4.92 0.00 0.00 4.00
2295 2390 2.025793 TGACCAGGTTTGACCAGTGAAA 60.026 45.455 0.00 0.00 41.95 2.69
2371 2468 0.524862 CAAGATGCTTGGGTGCACTC 59.475 55.000 17.98 14.58 46.33 3.51
2415 2513 6.096695 GTCAAATAATATCCGAGGAGCTCTC 58.903 44.000 14.64 8.29 39.10 3.20
2416 2514 5.775195 TCAAATAATATCCGAGGAGCTCTCA 59.225 40.000 14.64 0.00 42.55 3.27
2420 2518 2.682155 ATCCGAGGAGCTCTCAAAAC 57.318 50.000 14.64 0.00 42.55 2.43
2428 2542 6.538742 CCGAGGAGCTCTCAAAACATATTTTA 59.461 38.462 14.64 0.00 42.55 1.52
2498 2616 6.693545 TGTCGAAACACCACATAAATTTTCAC 59.306 34.615 0.00 0.00 0.00 3.18
2500 2618 5.386933 CGAAACACCACATAAATTTTCACGC 60.387 40.000 0.00 0.00 0.00 5.34
2501 2619 4.576216 ACACCACATAAATTTTCACGCA 57.424 36.364 0.00 0.00 0.00 5.24
2532 2659 0.037975 CAAGCATCTTGGTTGCCACC 60.038 55.000 0.00 0.00 46.71 4.61
2585 2725 2.631160 ACAGTTCATCGGTCAAACCA 57.369 45.000 0.00 0.00 38.47 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.411977 AGGGACGCTCTCTCAATGATG 59.588 52.381 0.00 0.00 0.00 3.07
43 44 0.032615 AGGAGGGACGCTCTCTCAAT 60.033 55.000 18.01 2.94 45.77 2.57
46 47 1.314730 CTAAGGAGGGACGCTCTCTC 58.685 60.000 18.01 6.53 43.25 3.20
48 49 1.406180 GAACTAAGGAGGGACGCTCTC 59.594 57.143 18.01 9.17 0.00 3.20
53 54 3.430929 CCTGAATGAACTAAGGAGGGACG 60.431 52.174 0.00 0.00 30.92 4.79
56 57 4.717280 AGTACCTGAATGAACTAAGGAGGG 59.283 45.833 0.00 0.00 33.78 4.30
57 58 5.450688 CGAGTACCTGAATGAACTAAGGAGG 60.451 48.000 0.00 0.00 33.78 4.30
58 59 5.357314 TCGAGTACCTGAATGAACTAAGGAG 59.643 44.000 0.00 0.00 33.78 3.69
59 60 5.258841 TCGAGTACCTGAATGAACTAAGGA 58.741 41.667 0.00 0.00 33.78 3.36
60 61 5.578005 TCGAGTACCTGAATGAACTAAGG 57.422 43.478 0.00 0.00 35.82 2.69
61 62 8.155821 TCTATCGAGTACCTGAATGAACTAAG 57.844 38.462 0.00 0.00 0.00 2.18
62 63 8.693120 ATCTATCGAGTACCTGAATGAACTAA 57.307 34.615 0.00 0.00 0.00 2.24
63 64 8.568794 CAATCTATCGAGTACCTGAATGAACTA 58.431 37.037 0.00 0.00 0.00 2.24
64 65 7.429633 CAATCTATCGAGTACCTGAATGAACT 58.570 38.462 0.00 0.00 0.00 3.01
65 66 6.642950 CCAATCTATCGAGTACCTGAATGAAC 59.357 42.308 0.00 0.00 0.00 3.18
66 67 6.239317 CCCAATCTATCGAGTACCTGAATGAA 60.239 42.308 0.00 0.00 0.00 2.57
67 68 5.243954 CCCAATCTATCGAGTACCTGAATGA 59.756 44.000 0.00 0.00 0.00 2.57
68 69 5.243954 TCCCAATCTATCGAGTACCTGAATG 59.756 44.000 0.00 0.00 0.00 2.67
69 70 5.244178 GTCCCAATCTATCGAGTACCTGAAT 59.756 44.000 0.00 0.00 0.00 2.57
70 71 4.583489 GTCCCAATCTATCGAGTACCTGAA 59.417 45.833 0.00 0.00 0.00 3.02
71 72 4.141228 AGTCCCAATCTATCGAGTACCTGA 60.141 45.833 0.00 0.00 0.00 3.86
72 73 4.145807 AGTCCCAATCTATCGAGTACCTG 58.854 47.826 0.00 0.00 0.00 4.00
73 74 4.456662 AGTCCCAATCTATCGAGTACCT 57.543 45.455 0.00 0.00 0.00 3.08
74 75 4.262079 CCAAGTCCCAATCTATCGAGTACC 60.262 50.000 0.00 0.00 0.00 3.34
75 76 4.796618 GCCAAGTCCCAATCTATCGAGTAC 60.797 50.000 0.00 0.00 0.00 2.73
76 77 3.321111 GCCAAGTCCCAATCTATCGAGTA 59.679 47.826 0.00 0.00 0.00 2.59
77 78 2.103263 GCCAAGTCCCAATCTATCGAGT 59.897 50.000 0.00 0.00 0.00 4.18
78 79 2.103094 TGCCAAGTCCCAATCTATCGAG 59.897 50.000 0.00 0.00 0.00 4.04
79 80 2.115427 TGCCAAGTCCCAATCTATCGA 58.885 47.619 0.00 0.00 0.00 3.59
80 81 2.213499 GTGCCAAGTCCCAATCTATCG 58.787 52.381 0.00 0.00 0.00 2.92
81 82 2.945668 GTGTGCCAAGTCCCAATCTATC 59.054 50.000 0.00 0.00 0.00 2.08
82 83 2.308570 TGTGTGCCAAGTCCCAATCTAT 59.691 45.455 0.00 0.00 0.00 1.98
83 84 1.702401 TGTGTGCCAAGTCCCAATCTA 59.298 47.619 0.00 0.00 0.00 1.98
84 85 0.478072 TGTGTGCCAAGTCCCAATCT 59.522 50.000 0.00 0.00 0.00 2.40
85 86 0.598065 GTGTGTGCCAAGTCCCAATC 59.402 55.000 0.00 0.00 0.00 2.67
133 134 1.080705 CGAAGGTGTGGTCCGAGTC 60.081 63.158 0.00 0.00 0.00 3.36
145 146 0.613777 GACCACCCTCATTCGAAGGT 59.386 55.000 9.94 6.20 36.31 3.50
148 149 1.594833 CCGACCACCCTCATTCGAA 59.405 57.895 0.00 0.00 33.20 3.71
192 193 4.570663 GCATAGCCGTCGTCGCCT 62.571 66.667 0.00 0.00 35.54 5.52
206 207 1.997874 GTCCTCCTCCACCCAGCAT 60.998 63.158 0.00 0.00 0.00 3.79
209 210 0.838122 AGTTGTCCTCCTCCACCCAG 60.838 60.000 0.00 0.00 0.00 4.45
233 234 8.703743 AGCAAATAATGTAAAATAGGGCATCAA 58.296 29.630 0.00 0.00 0.00 2.57
238 239 6.279882 TGCAGCAAATAATGTAAAATAGGGC 58.720 36.000 0.00 0.00 0.00 5.19
262 263 9.869757 GTTTTAGGGCATCAACAATTTTATACT 57.130 29.630 0.00 0.00 0.00 2.12
263 264 9.093970 GGTTTTAGGGCATCAACAATTTTATAC 57.906 33.333 0.00 0.00 0.00 1.47
264 265 7.976734 CGGTTTTAGGGCATCAACAATTTTATA 59.023 33.333 0.00 0.00 0.00 0.98
266 267 6.159988 CGGTTTTAGGGCATCAACAATTTTA 58.840 36.000 0.00 0.00 0.00 1.52
273 274 1.471287 GGACGGTTTTAGGGCATCAAC 59.529 52.381 0.00 0.00 0.00 3.18
274 275 1.614850 GGGACGGTTTTAGGGCATCAA 60.615 52.381 0.00 0.00 0.00 2.57
290 293 1.001760 TGTAGGGCAGGAGAGGGAC 59.998 63.158 0.00 0.00 0.00 4.46
293 296 0.618968 AAGGTGTAGGGCAGGAGAGG 60.619 60.000 0.00 0.00 0.00 3.69
296 299 3.933861 AATAAAGGTGTAGGGCAGGAG 57.066 47.619 0.00 0.00 0.00 3.69
307 310 6.128007 ACAGATGCCTCGTTAAAATAAAGGTG 60.128 38.462 0.00 0.00 0.00 4.00
309 312 6.436843 ACAGATGCCTCGTTAAAATAAAGG 57.563 37.500 0.00 0.00 0.00 3.11
314 317 3.596214 ACGACAGATGCCTCGTTAAAAT 58.404 40.909 0.00 0.00 40.16 1.82
316 319 2.736144 ACGACAGATGCCTCGTTAAA 57.264 45.000 0.00 0.00 40.16 1.52
320 323 1.174783 AGTAACGACAGATGCCTCGT 58.825 50.000 0.00 0.00 44.89 4.18
321 324 2.186076 GAAGTAACGACAGATGCCTCG 58.814 52.381 0.00 0.00 35.96 4.63
322 325 2.186076 CGAAGTAACGACAGATGCCTC 58.814 52.381 0.00 0.00 35.09 4.70
323 326 1.544691 ACGAAGTAACGACAGATGCCT 59.455 47.619 0.00 0.00 41.94 4.75
324 327 1.992170 ACGAAGTAACGACAGATGCC 58.008 50.000 0.00 0.00 41.94 4.40
339 342 7.171508 CAGCATAGCATCCTTAGATTTTACGAA 59.828 37.037 0.00 0.00 0.00 3.85
340 343 6.646653 CAGCATAGCATCCTTAGATTTTACGA 59.353 38.462 0.00 0.00 0.00 3.43
344 347 4.522022 GCCAGCATAGCATCCTTAGATTTT 59.478 41.667 0.00 0.00 0.00 1.82
345 348 4.077822 GCCAGCATAGCATCCTTAGATTT 58.922 43.478 0.00 0.00 0.00 2.17
346 349 3.330110 AGCCAGCATAGCATCCTTAGATT 59.670 43.478 0.00 0.00 0.00 2.40
347 350 2.911636 AGCCAGCATAGCATCCTTAGAT 59.088 45.455 0.00 0.00 0.00 1.98
348 351 2.301296 GAGCCAGCATAGCATCCTTAGA 59.699 50.000 0.00 0.00 0.00 2.10
351 354 0.841961 TGAGCCAGCATAGCATCCTT 59.158 50.000 0.00 0.00 0.00 3.36
352 355 0.397187 CTGAGCCAGCATAGCATCCT 59.603 55.000 0.00 0.00 0.00 3.24
353 356 0.108207 ACTGAGCCAGCATAGCATCC 59.892 55.000 2.50 0.00 34.37 3.51
354 357 1.070445 AGACTGAGCCAGCATAGCATC 59.930 52.381 2.50 0.00 34.37 3.91
355 358 1.129917 AGACTGAGCCAGCATAGCAT 58.870 50.000 2.50 0.00 34.37 3.79
356 359 0.907486 AAGACTGAGCCAGCATAGCA 59.093 50.000 2.50 0.00 34.37 3.49
357 360 1.939255 GAAAGACTGAGCCAGCATAGC 59.061 52.381 2.50 0.00 34.37 2.97
358 361 2.159184 TCGAAAGACTGAGCCAGCATAG 60.159 50.000 2.50 0.00 34.37 2.23
359 362 1.824852 TCGAAAGACTGAGCCAGCATA 59.175 47.619 2.50 0.00 34.37 3.14
360 363 0.610174 TCGAAAGACTGAGCCAGCAT 59.390 50.000 2.50 0.00 34.37 3.79
361 364 0.392706 TTCGAAAGACTGAGCCAGCA 59.607 50.000 0.00 0.00 41.84 4.41
362 365 1.074752 CTTCGAAAGACTGAGCCAGC 58.925 55.000 0.00 0.00 41.84 4.85
363 366 2.732412 TCTTCGAAAGACTGAGCCAG 57.268 50.000 0.00 1.16 41.84 4.85
364 367 2.932622 GCATCTTCGAAAGACTGAGCCA 60.933 50.000 0.00 0.00 41.01 4.75
365 368 1.663135 GCATCTTCGAAAGACTGAGCC 59.337 52.381 0.00 0.00 41.01 4.70
366 369 2.602660 GAGCATCTTCGAAAGACTGAGC 59.397 50.000 0.00 3.03 41.01 4.26
367 370 3.842820 TGAGCATCTTCGAAAGACTGAG 58.157 45.455 0.00 0.00 41.01 3.35
368 371 3.942130 TGAGCATCTTCGAAAGACTGA 57.058 42.857 0.00 0.00 41.01 3.41
369 372 4.744137 CCTATGAGCATCTTCGAAAGACTG 59.256 45.833 0.00 0.00 41.01 3.51
370 373 4.739137 GCCTATGAGCATCTTCGAAAGACT 60.739 45.833 0.00 0.00 41.01 3.24
371 374 3.492756 GCCTATGAGCATCTTCGAAAGAC 59.507 47.826 0.00 0.00 41.01 3.01
372 375 3.722147 GCCTATGAGCATCTTCGAAAGA 58.278 45.455 0.00 0.00 42.69 2.52
373 376 2.474359 CGCCTATGAGCATCTTCGAAAG 59.526 50.000 0.00 0.00 34.92 2.62
374 377 2.159099 ACGCCTATGAGCATCTTCGAAA 60.159 45.455 0.00 0.00 34.92 3.46
375 378 1.409064 ACGCCTATGAGCATCTTCGAA 59.591 47.619 0.00 0.00 34.92 3.71
376 379 1.032794 ACGCCTATGAGCATCTTCGA 58.967 50.000 0.00 0.00 34.92 3.71
377 380 2.226674 TCTACGCCTATGAGCATCTTCG 59.773 50.000 0.00 0.00 34.92 3.79
378 381 3.254657 ACTCTACGCCTATGAGCATCTTC 59.745 47.826 0.00 0.00 34.92 2.87
379 382 3.226777 ACTCTACGCCTATGAGCATCTT 58.773 45.455 0.00 0.00 34.92 2.40
380 383 2.870175 ACTCTACGCCTATGAGCATCT 58.130 47.619 0.00 0.00 34.92 2.90
381 384 4.667262 CATACTCTACGCCTATGAGCATC 58.333 47.826 0.00 0.00 0.00 3.91
382 385 3.119316 GCATACTCTACGCCTATGAGCAT 60.119 47.826 0.00 0.00 0.00 3.79
383 386 2.229062 GCATACTCTACGCCTATGAGCA 59.771 50.000 0.00 0.00 0.00 4.26
384 387 2.729467 CGCATACTCTACGCCTATGAGC 60.729 54.545 0.00 0.00 0.00 4.26
385 388 2.484651 ACGCATACTCTACGCCTATGAG 59.515 50.000 0.00 0.00 0.00 2.90
386 389 2.225727 CACGCATACTCTACGCCTATGA 59.774 50.000 0.00 0.00 0.00 2.15
387 390 2.585845 CACGCATACTCTACGCCTATG 58.414 52.381 0.00 0.00 0.00 2.23
388 391 1.068472 GCACGCATACTCTACGCCTAT 60.068 52.381 0.00 0.00 0.00 2.57
389 392 0.309922 GCACGCATACTCTACGCCTA 59.690 55.000 0.00 0.00 0.00 3.93
390 393 1.065928 GCACGCATACTCTACGCCT 59.934 57.895 0.00 0.00 0.00 5.52
391 394 0.597637 ATGCACGCATACTCTACGCC 60.598 55.000 1.86 0.00 34.49 5.68
392 395 0.504384 CATGCACGCATACTCTACGC 59.496 55.000 3.80 0.00 34.91 4.42
393 396 1.518515 CACATGCACGCATACTCTACG 59.481 52.381 3.80 0.00 34.91 3.51
394 397 2.540515 ACACATGCACGCATACTCTAC 58.459 47.619 3.80 0.00 34.91 2.59
395 398 2.959507 ACACATGCACGCATACTCTA 57.040 45.000 3.80 0.00 34.91 2.43
396 399 2.099141 AACACATGCACGCATACTCT 57.901 45.000 3.80 0.00 34.91 3.24
397 400 2.900122 AAACACATGCACGCATACTC 57.100 45.000 3.80 0.00 34.91 2.59
398 401 4.511454 CCTATAAACACATGCACGCATACT 59.489 41.667 3.80 0.00 34.91 2.12
399 402 4.509970 TCCTATAAACACATGCACGCATAC 59.490 41.667 3.80 0.00 34.91 2.39
400 403 4.698575 TCCTATAAACACATGCACGCATA 58.301 39.130 3.80 0.00 34.91 3.14
401 404 3.540617 TCCTATAAACACATGCACGCAT 58.459 40.909 0.00 0.00 37.08 4.73
402 405 2.979240 TCCTATAAACACATGCACGCA 58.021 42.857 0.00 0.00 0.00 5.24
403 406 3.559655 TCATCCTATAAACACATGCACGC 59.440 43.478 0.00 0.00 0.00 5.34
404 407 4.811024 ACTCATCCTATAAACACATGCACG 59.189 41.667 0.00 0.00 0.00 5.34
405 408 5.586243 ACACTCATCCTATAAACACATGCAC 59.414 40.000 0.00 0.00 0.00 4.57
406 409 5.744171 ACACTCATCCTATAAACACATGCA 58.256 37.500 0.00 0.00 0.00 3.96
407 410 7.571983 GCATACACTCATCCTATAAACACATGC 60.572 40.741 0.00 0.00 0.00 4.06
408 411 7.658982 AGCATACACTCATCCTATAAACACATG 59.341 37.037 0.00 0.00 0.00 3.21
409 412 7.739825 AGCATACACTCATCCTATAAACACAT 58.260 34.615 0.00 0.00 0.00 3.21
410 413 7.124573 AGCATACACTCATCCTATAAACACA 57.875 36.000 0.00 0.00 0.00 3.72
411 414 7.710907 TGAAGCATACACTCATCCTATAAACAC 59.289 37.037 0.00 0.00 0.00 3.32
412 415 7.791029 TGAAGCATACACTCATCCTATAAACA 58.209 34.615 0.00 0.00 0.00 2.83
413 416 8.839310 ATGAAGCATACACTCATCCTATAAAC 57.161 34.615 0.00 0.00 0.00 2.01
414 417 9.276590 CAATGAAGCATACACTCATCCTATAAA 57.723 33.333 0.00 0.00 0.00 1.40
415 418 8.432013 ACAATGAAGCATACACTCATCCTATAA 58.568 33.333 0.00 0.00 0.00 0.98
416 419 7.874528 CACAATGAAGCATACACTCATCCTATA 59.125 37.037 0.00 0.00 0.00 1.31
417 420 6.709397 CACAATGAAGCATACACTCATCCTAT 59.291 38.462 0.00 0.00 0.00 2.57
418 421 6.051074 CACAATGAAGCATACACTCATCCTA 58.949 40.000 0.00 0.00 0.00 2.94
419 422 4.880120 CACAATGAAGCATACACTCATCCT 59.120 41.667 0.00 0.00 0.00 3.24
420 423 4.637534 ACACAATGAAGCATACACTCATCC 59.362 41.667 0.00 0.00 0.00 3.51
421 424 5.352293 TCACACAATGAAGCATACACTCATC 59.648 40.000 0.00 0.00 33.02 2.92
422 425 5.247862 TCACACAATGAAGCATACACTCAT 58.752 37.500 0.00 0.00 33.02 2.90
423 426 4.640364 TCACACAATGAAGCATACACTCA 58.360 39.130 0.00 0.00 33.02 3.41
424 427 4.436584 GCTCACACAATGAAGCATACACTC 60.437 45.833 0.00 0.00 36.69 3.51
425 428 3.438087 GCTCACACAATGAAGCATACACT 59.562 43.478 0.00 0.00 36.69 3.55
426 429 3.725895 CGCTCACACAATGAAGCATACAC 60.726 47.826 0.00 0.00 36.69 2.90
427 430 2.416202 CGCTCACACAATGAAGCATACA 59.584 45.455 0.00 0.00 36.69 2.29
428 431 2.672874 TCGCTCACACAATGAAGCATAC 59.327 45.455 0.00 0.00 36.69 2.39
429 432 2.672874 GTCGCTCACACAATGAAGCATA 59.327 45.455 0.00 0.00 36.69 3.14
430 433 1.466167 GTCGCTCACACAATGAAGCAT 59.534 47.619 0.00 0.00 36.69 3.79
431 434 0.867746 GTCGCTCACACAATGAAGCA 59.132 50.000 0.00 0.00 36.69 3.91
432 435 1.151668 AGTCGCTCACACAATGAAGC 58.848 50.000 0.00 0.00 36.69 3.86
433 436 3.885484 AAAGTCGCTCACACAATGAAG 57.115 42.857 0.00 0.00 36.69 3.02
434 437 5.940192 ATTAAAGTCGCTCACACAATGAA 57.060 34.783 0.00 0.00 36.69 2.57
435 438 5.238432 ACAATTAAAGTCGCTCACACAATGA 59.762 36.000 0.00 0.00 35.45 2.57
436 439 5.451908 ACAATTAAAGTCGCTCACACAATG 58.548 37.500 0.00 0.00 0.00 2.82
437 440 5.689383 ACAATTAAAGTCGCTCACACAAT 57.311 34.783 0.00 0.00 0.00 2.71
438 441 6.400621 CGATACAATTAAAGTCGCTCACACAA 60.401 38.462 0.00 0.00 0.00 3.33
439 442 5.061684 CGATACAATTAAAGTCGCTCACACA 59.938 40.000 0.00 0.00 0.00 3.72
440 443 5.061808 ACGATACAATTAAAGTCGCTCACAC 59.938 40.000 0.00 0.00 35.86 3.82
441 444 5.061684 CACGATACAATTAAAGTCGCTCACA 59.938 40.000 0.00 0.00 35.86 3.58
442 445 5.061808 ACACGATACAATTAAAGTCGCTCAC 59.938 40.000 0.00 0.00 35.86 3.51
443 446 5.165676 ACACGATACAATTAAAGTCGCTCA 58.834 37.500 0.00 0.00 35.86 4.26
444 447 5.697848 ACACGATACAATTAAAGTCGCTC 57.302 39.130 0.00 0.00 35.86 5.03
445 448 7.585286 TTAACACGATACAATTAAAGTCGCT 57.415 32.000 0.00 0.00 35.86 4.93
446 449 8.644264 TTTTAACACGATACAATTAAAGTCGC 57.356 30.769 0.00 0.00 35.86 5.19
471 474 4.417506 GCGGATAACACGGCTTTATTTTT 58.582 39.130 0.00 0.00 34.19 1.94
472 475 4.023739 GCGGATAACACGGCTTTATTTT 57.976 40.909 0.00 0.00 34.19 1.82
473 476 3.685836 GCGGATAACACGGCTTTATTT 57.314 42.857 0.00 0.00 34.19 1.40
548 551 0.602638 GCTGTGGGTTGTGACGATCA 60.603 55.000 0.00 0.00 0.00 2.92
549 552 1.298859 GGCTGTGGGTTGTGACGATC 61.299 60.000 0.00 0.00 0.00 3.69
605 608 0.320374 GGTGGTCTGTTCATCACGGA 59.680 55.000 0.00 0.00 38.59 4.69
606 609 0.034756 TGGTGGTCTGTTCATCACGG 59.965 55.000 0.00 0.00 0.00 4.94
607 610 1.148310 GTGGTGGTCTGTTCATCACG 58.852 55.000 0.00 0.00 36.66 4.35
609 612 1.347707 GGAGTGGTGGTCTGTTCATCA 59.652 52.381 0.00 0.00 0.00 3.07
610 613 1.673033 CGGAGTGGTGGTCTGTTCATC 60.673 57.143 0.00 0.00 0.00 2.92
611 614 0.321671 CGGAGTGGTGGTCTGTTCAT 59.678 55.000 0.00 0.00 0.00 2.57
612 615 1.046472 ACGGAGTGGTGGTCTGTTCA 61.046 55.000 0.00 0.00 42.51 3.18
687 690 4.843728 AGTTGCCGAGATGATCCTAAAAA 58.156 39.130 0.00 0.00 0.00 1.94
688 691 4.487714 AGTTGCCGAGATGATCCTAAAA 57.512 40.909 0.00 0.00 0.00 1.52
689 692 4.649674 AGTAGTTGCCGAGATGATCCTAAA 59.350 41.667 0.00 0.00 0.00 1.85
690 693 4.215908 AGTAGTTGCCGAGATGATCCTAA 58.784 43.478 0.00 0.00 0.00 2.69
691 694 3.833732 AGTAGTTGCCGAGATGATCCTA 58.166 45.455 0.00 0.00 0.00 2.94
692 695 2.672098 AGTAGTTGCCGAGATGATCCT 58.328 47.619 0.00 0.00 0.00 3.24
693 696 3.126831 CAAGTAGTTGCCGAGATGATCC 58.873 50.000 0.00 0.00 0.00 3.36
694 697 3.799420 GTCAAGTAGTTGCCGAGATGATC 59.201 47.826 5.35 0.00 33.23 2.92
695 698 3.735208 CGTCAAGTAGTTGCCGAGATGAT 60.735 47.826 7.97 0.00 37.20 2.45
696 699 2.415491 CGTCAAGTAGTTGCCGAGATGA 60.415 50.000 7.97 0.00 37.20 2.92
697 700 1.920574 CGTCAAGTAGTTGCCGAGATG 59.079 52.381 7.97 0.00 37.20 2.90
698 701 1.816835 TCGTCAAGTAGTTGCCGAGAT 59.183 47.619 12.08 0.00 39.03 2.75
699 702 1.241165 TCGTCAAGTAGTTGCCGAGA 58.759 50.000 12.08 3.21 39.03 4.04
700 703 3.786809 TCGTCAAGTAGTTGCCGAG 57.213 52.632 12.08 1.05 39.03 4.63
701 704 0.956633 ACTCGTCAAGTAGTTGCCGA 59.043 50.000 14.96 14.96 41.48 5.54
702 705 1.779569 AACTCGTCAAGTAGTTGCCG 58.220 50.000 7.39 7.39 37.17 5.69
703 706 5.857822 AAATAACTCGTCAAGTAGTTGCC 57.142 39.130 5.35 0.00 37.17 4.52
704 707 6.077838 CCAAAATAACTCGTCAAGTAGTTGC 58.922 40.000 5.35 0.62 37.17 4.17
705 708 7.042321 TCACCAAAATAACTCGTCAAGTAGTTG 60.042 37.037 3.73 3.73 37.17 3.16
706 709 6.987992 TCACCAAAATAACTCGTCAAGTAGTT 59.012 34.615 0.00 0.00 37.17 2.24
707 710 6.518493 TCACCAAAATAACTCGTCAAGTAGT 58.482 36.000 0.00 0.00 37.17 2.73
708 711 6.401153 GCTCACCAAAATAACTCGTCAAGTAG 60.401 42.308 0.00 0.00 37.17 2.57
709 712 5.407387 GCTCACCAAAATAACTCGTCAAGTA 59.593 40.000 0.00 0.00 37.17 2.24
725 728 2.947532 CGGCTGGAGAGCTCACCAA 61.948 63.158 29.37 15.79 45.44 3.67
779 782 8.201464 TGTTTTTGTATCCTTCTTCTTTTTCCC 58.799 33.333 0.00 0.00 0.00 3.97
851 855 2.359975 GGTGGAAAGGGACAGGCG 60.360 66.667 0.00 0.00 0.00 5.52
1018 1022 3.284449 GCTTTGGACGCGTTGGGT 61.284 61.111 15.53 0.00 0.00 4.51
1056 1060 0.391793 CTTCCTTTCCTCGGTGCTCC 60.392 60.000 0.00 0.00 0.00 4.70
1068 1072 1.283321 GGAGGAGATGGTGCTTCCTTT 59.717 52.381 0.00 0.00 37.07 3.11
1079 1083 2.429058 CCGGCCATGGAGGAGATG 59.571 66.667 18.40 0.00 41.22 2.90
1200 1210 3.608662 GACCACCACCGTCACCGA 61.609 66.667 0.00 0.00 35.63 4.69
1476 1486 5.365619 TGGGTAGACTGAAGAACAAAGAAC 58.634 41.667 0.00 0.00 0.00 3.01
1525 1535 3.499537 TGCACACTAGCATCACAAAGAAG 59.500 43.478 0.00 0.00 40.11 2.85
1526 1536 3.475575 TGCACACTAGCATCACAAAGAA 58.524 40.909 0.00 0.00 40.11 2.52
1527 1537 3.124578 TGCACACTAGCATCACAAAGA 57.875 42.857 0.00 0.00 40.11 2.52
1575 1585 3.057526 TCATCTCACTGTCGTAACCTGTG 60.058 47.826 0.00 0.00 33.11 3.66
1577 1587 3.850122 TCATCTCACTGTCGTAACCTG 57.150 47.619 0.00 0.00 0.00 4.00
1579 1589 5.235616 TGTTTTTCATCTCACTGTCGTAACC 59.764 40.000 0.00 0.00 0.00 2.85
1623 1633 6.561614 TCAGTAGCGACGAAGAGATTTATTT 58.438 36.000 0.00 0.00 0.00 1.40
1721 1754 1.546029 GTTGGAGGTGATGGAAAAGGC 59.454 52.381 0.00 0.00 0.00 4.35
1723 1756 2.226437 CGTGTTGGAGGTGATGGAAAAG 59.774 50.000 0.00 0.00 0.00 2.27
1734 1768 0.603707 ACATGCAGACGTGTTGGAGG 60.604 55.000 0.00 0.00 43.67 4.30
1824 1906 0.618458 TATATCATGGCCCGGCTTCC 59.382 55.000 9.86 0.00 0.00 3.46
1881 1964 1.855978 CAAGCTGTTCGACGTGTTGTA 59.144 47.619 0.00 0.00 0.00 2.41
1946 2029 2.279918 GTGGTCGACAACGCCAGT 60.280 61.111 18.91 0.00 42.57 4.00
1947 2030 3.403057 CGTGGTCGACAACGCCAG 61.403 66.667 30.64 6.92 42.57 4.85
1948 2031 4.953868 CCGTGGTCGACAACGCCA 62.954 66.667 34.72 13.69 40.90 5.69
1950 2033 4.651008 TCCCGTGGTCGACAACGC 62.651 66.667 34.72 16.34 39.71 4.84
1951 2034 2.732094 GTCCCGTGGTCGACAACG 60.732 66.667 33.51 33.51 39.71 4.10
1952 2035 1.663702 CTGTCCCGTGGTCGACAAC 60.664 63.158 18.91 16.12 39.71 3.32
1953 2036 2.732016 CTGTCCCGTGGTCGACAA 59.268 61.111 18.91 2.10 39.71 3.18
1954 2037 3.986006 GCTGTCCCGTGGTCGACA 61.986 66.667 18.91 0.27 39.71 4.35
1996 2079 0.758685 CCCACCACCACCAATTGTGT 60.759 55.000 4.43 0.00 43.85 3.72
2000 2083 1.836604 GCACCCACCACCACCAATT 60.837 57.895 0.00 0.00 0.00 2.32
2007 2090 2.359478 CGTTAGGCACCCACCACC 60.359 66.667 0.00 0.00 0.00 4.61
2008 2091 1.375523 CTCGTTAGGCACCCACCAC 60.376 63.158 0.00 0.00 0.00 4.16
2009 2092 1.534476 TCTCGTTAGGCACCCACCA 60.534 57.895 0.00 0.00 0.00 4.17
2010 2093 1.079336 GTCTCGTTAGGCACCCACC 60.079 63.158 0.00 0.00 0.00 4.61
2011 2094 0.034337 TTGTCTCGTTAGGCACCCAC 59.966 55.000 0.00 0.00 36.97 4.61
2012 2095 0.759959 TTTGTCTCGTTAGGCACCCA 59.240 50.000 0.00 0.00 36.97 4.51
2065 2148 1.227147 CCGACACTGACACCAACGT 60.227 57.895 0.00 0.00 0.00 3.99
2075 2158 0.036010 AATTCCTGGCTCCGACACTG 60.036 55.000 0.00 0.00 0.00 3.66
2076 2159 0.693049 AAATTCCTGGCTCCGACACT 59.307 50.000 0.00 0.00 0.00 3.55
2077 2160 0.804989 CAAATTCCTGGCTCCGACAC 59.195 55.000 0.00 0.00 0.00 3.67
2078 2161 0.960364 GCAAATTCCTGGCTCCGACA 60.960 55.000 0.00 0.00 0.00 4.35
2079 2162 0.678048 AGCAAATTCCTGGCTCCGAC 60.678 55.000 0.00 0.00 30.74 4.79
2080 2163 0.392998 GAGCAAATTCCTGGCTCCGA 60.393 55.000 0.00 0.00 46.35 4.55
2081 2164 2.101700 GAGCAAATTCCTGGCTCCG 58.898 57.895 0.00 0.00 46.35 4.63
2083 2166 1.475682 CAAGGAGCAAATTCCTGGCTC 59.524 52.381 4.37 4.37 46.90 4.70
2084 2167 1.553706 CAAGGAGCAAATTCCTGGCT 58.446 50.000 0.00 0.00 46.90 4.75
2085 2168 0.533951 CCAAGGAGCAAATTCCTGGC 59.466 55.000 0.00 0.00 46.90 4.85
2086 2169 1.928868 ACCAAGGAGCAAATTCCTGG 58.071 50.000 0.00 2.86 46.90 4.45
2087 2170 4.952335 AGAATACCAAGGAGCAAATTCCTG 59.048 41.667 0.00 0.00 46.90 3.86
2089 2172 5.921962 AAGAATACCAAGGAGCAAATTCC 57.078 39.130 0.00 0.00 37.52 3.01
2090 2173 7.606349 AGAAAAGAATACCAAGGAGCAAATTC 58.394 34.615 0.00 0.00 0.00 2.17
2091 2174 7.544804 AGAAAAGAATACCAAGGAGCAAATT 57.455 32.000 0.00 0.00 0.00 1.82
2092 2175 7.544804 AAGAAAAGAATACCAAGGAGCAAAT 57.455 32.000 0.00 0.00 0.00 2.32
2093 2176 6.976934 AAGAAAAGAATACCAAGGAGCAAA 57.023 33.333 0.00 0.00 0.00 3.68
2094 2177 6.976934 AAAGAAAAGAATACCAAGGAGCAA 57.023 33.333 0.00 0.00 0.00 3.91
2095 2178 6.976934 AAAAGAAAAGAATACCAAGGAGCA 57.023 33.333 0.00 0.00 0.00 4.26
2096 2179 7.433680 TCAAAAAGAAAAGAATACCAAGGAGC 58.566 34.615 0.00 0.00 0.00 4.70
2097 2180 9.816354 TTTCAAAAAGAAAAGAATACCAAGGAG 57.184 29.630 0.00 0.00 43.00 3.69
2123 2206 5.976458 TGAGAGACCAAAAACATGCTTTTT 58.024 33.333 4.08 8.14 32.38 1.94
2129 2212 7.035004 TGAAAACTTGAGAGACCAAAAACATG 58.965 34.615 0.00 0.00 0.00 3.21
2142 2225 7.807977 AGTCTATGCTTTTGAAAACTTGAGA 57.192 32.000 0.00 0.00 0.00 3.27
2151 2234 4.079253 GGGACCAAGTCTATGCTTTTGAA 58.921 43.478 0.00 0.00 32.47 2.69
2159 2243 8.581253 AAAAATCTTAAGGGACCAAGTCTATG 57.419 34.615 1.85 0.00 32.47 2.23
2185 2269 2.917933 TGAAGGACCAAATGCCTATCG 58.082 47.619 0.00 0.00 33.20 2.92
2191 2277 3.149196 TGAGACTTGAAGGACCAAATGC 58.851 45.455 0.00 0.00 0.00 3.56
2218 2304 7.611213 ATCTCGTTTCGGATCAAACTTATTT 57.389 32.000 6.98 0.00 34.59 1.40
2219 2305 7.611213 AATCTCGTTTCGGATCAAACTTATT 57.389 32.000 6.98 2.55 34.59 1.40
2229 2315 3.751175 TGCTCAAAAATCTCGTTTCGGAT 59.249 39.130 0.00 0.00 0.00 4.18
2233 2319 3.873529 ACGTGCTCAAAAATCTCGTTTC 58.126 40.909 0.00 0.00 0.00 2.78
2238 2324 3.555518 GGTCAACGTGCTCAAAAATCTC 58.444 45.455 0.00 0.00 0.00 2.75
2253 2339 1.278637 CAGGTCAAACGCGGTCAAC 59.721 57.895 12.47 5.58 0.00 3.18
2261 2356 3.088259 TGGTCAACCAGGTCAAACG 57.912 52.632 0.00 0.00 42.01 3.60
2270 2365 0.626382 TGGTCAAACCTGGTCAACCA 59.374 50.000 18.61 18.61 44.78 3.67
2271 2366 1.318576 CTGGTCAAACCTGGTCAACC 58.681 55.000 14.88 14.88 39.58 3.77
2311 2408 8.946085 TCAGATATTTTTGAAAGTGTTCGCTAT 58.054 29.630 0.00 0.00 36.46 2.97
2334 2431 7.439056 AGCATCTTGGTTGTTACAAAATTTCAG 59.561 33.333 0.00 0.00 0.00 3.02
2368 2465 1.538075 CAAAAATTACCCGCACCGAGT 59.462 47.619 0.00 0.00 0.00 4.18
2371 2468 1.667467 CCACAAAAATTACCCGCACCG 60.667 52.381 0.00 0.00 0.00 4.94
2500 2618 3.127533 GCTTGGGTGCGCTAGGTG 61.128 66.667 9.73 0.00 0.00 4.00
2501 2619 2.876368 GATGCTTGGGTGCGCTAGGT 62.876 60.000 9.73 0.00 35.36 3.08
2564 2704 3.395639 TGGTTTGACCGATGAACTGTAC 58.604 45.455 0.00 0.00 42.58 2.90
2568 2708 1.420138 ACCTGGTTTGACCGATGAACT 59.580 47.619 0.00 0.00 42.58 3.01
2585 2725 2.158667 AGATTTTGACCCACGTTGACCT 60.159 45.455 0.00 0.00 0.00 3.85
2616 2766 8.647796 TCAAGTCTCAAAACCAGATAAGTTCTA 58.352 33.333 0.00 0.00 31.77 2.10
2617 2767 7.509546 TCAAGTCTCAAAACCAGATAAGTTCT 58.490 34.615 0.00 0.00 33.90 3.01
2618 2768 7.730364 TCAAGTCTCAAAACCAGATAAGTTC 57.270 36.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.