>input_sequence_73031
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-------------------------------------------ACCCACTCCCACGCCCAAACCCAACGCGTCCAAAGCA
GCAGAGGAGTCCAAGAACCGGAGCACCGAGGAAAGGAAGCACCATCTCCTCCATGGCCGGCTGCTGCGTCTTCCTCCGGC
GGCCGTCGACCTCCTCCGCCTACCGCCTCGGGTACCACTCCCTCGACGGCGACCACGAG---GCCGGCCCGCCCCCGG--
-CCCCGGCGTCGGTGACGGTGGTGGTCGGGAAGGAGCGGCGGGTGTTCGCGGTGGACCAGCTGGTGCTCGACACCTACCC
GTTCCGGGTGCTCCTGGAGACGGCGGCCAGGAAGGAGGAGCGCAGGGGCAAGGCCCTCTTCGTGGACGTCGACGCCATCC
TCTTCGAGCACATCCTCTGGCTCGCCGGCTGCCACGACCGCTCCGCCGTCTCCCTCCTCCAGCCCGACCTCAAGGACATC
ATCGACTTCTACTCCCAGGACGCCTGAAGACCATCATCTCATCACGTTCTTTGTTCTTCAGTCTACCCATTCTTTTATTT
TTCTTCTTCTTCTTCTTCTTTGTGATGCTAGTGTGCATAGTGATCGATGAATCAGATCATCTGTCACAGGTTACGACAGT
GAGATGAAAAACACTATAGTAAATTATAGAAAAA---------ATAAATCTCTTCGTCGCTA------------------
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>chr4D_1_TraesCS4D01G285800
GACGAACTTGGGGCAGCTGAGGGAGTCCGGGCTTACGGGCATCATTGAGAGAGCGTCCCTCCTTAGTTCATTCAGGTACT
CGATAGATTGGGACTTGGCACACACCCTAGACATGGTCGCGGTTGTCAAGGAGGACTCGGACCACACCTTCGAATGAGGG
TGGTCGGCGGCAGAAGCTCGGGGGCGCGCTCGAGGCGACGACGGCTATGCTGGGTGGAGGAGGACAACTTTTTTTGATGC
CCTATTTTACATTATTTGCTGCAGTATAAAATTGTTGATGCCCTAAAAC--CGTCCCTCTCCTGCCCTACACCTTTATTT
TAACGAGGCATCTGTCGTTACTTCGTAAAATCTAAGGATGCTATGCTGGCTCAGTCTTTCGAAGATGCTCATAGGCGTAG
AGTATGCGTGCATGTGTTTATAGGATGAGTGTATGCTTCATTGTGTGAGCGACTTTAATTGTATCGTGTTAAAAAAAATA
AAGCCGTGTTATCCGCCCCGCGTGCTCGGGCGCACGCGATGGCGATGCAACGCGCAACGGGGGCACGTCATGATCGTCAC
AACCCACAGCCACGCGCTCGGCATCGTCGTGCACTCGTGCCCGTGTGTCCGTGATGAACAGACCACCACTCCGTCCCAGT
GCAAAACACCGCGTGTCTCTACAGCCTACACGTCTCGACAACTACTTTTTTTTTAGGATCATCTCGGCAACTACTTGACG
AGTTATTTTGGTGAGCTCTCCAGCCGGCGGAGCCAAGTCAGAGACGAAATCGATGGAAAGGGGGAA-AAAGAAGAAGGAT
ACAAAAACATGGACGAGTGGCGGACAGAGGGAGCTGGTCCAGGACGCGGCCCCCCGCCTGTCCCTTTCCACCACCCCCTG
TCCTGCGCTGCCCGGCCCGGTCCAACGGCTACCCCGAGACGGCCAGCTCCAGCCTCCAACGGCTCGACCCGCCCACGATC
CCGTCTCCTAGTATAAACCACCTCGCCGCGCCCTCCCCAGCGAACCCACTCCCACGCCCAAACCCAACGCGTCCAAAGCA
GCAGAGGAGTCCAAGAACCGGAGCACCGAGGAAAGGAAGCACCATCTCCTCCATGGCCGGCTGCTGCGTCTTCCTCCGGC
GGCCGTCGACCTCCTCCGCCTACCGCCTCGGGTACCACTCCCTCGACGGCGACCACGAG---GCCGGCCCGCCCCCGG--
-CCCCGGCGTCGGTGACGGTGGTGGTCGGGAAGGAGCGGCGGGTGTTCGCGGTGGACCAGCTGGTGCTCGACACCTACCC
GTTCCGGGTGCTCCTGGAGACGGCGGCCAGGAAGGAGGAGCGCAGGGGCAAGGCCCTCTTCGTGGACGTCGACGCCATCC
TCTTCGAGCACATCCTCTGGCTCGCCGGCTGCCACGACCGCTCCGCCGTCTCCCTCCTCCAGCCCGACCTCAAGGACATC
ATCGACTTCTACTCCCAGGACGCCTGAAGACCATCATCTCATCACGTTCTTTGTTCTTCAGTCTACCCATTCTTTTATTT
TTCTTCTTCTTCTTCTTCTTTGTGATGCTAGTGTGCATAGTGATCGATGAATCAGATCATCTGTCACAGGTTACGACAGT
GAGATGAAAAACACTATAGTAAATTATAGAAAAA---------ATAAATCTCTTCGTCGCTACTGAATCTCGATGCATTG
CAGCTGTCTTCCTCGTTGCTGGCACGCACGTCCTTCTTCTGAACA--------------TTGTGATCTCCTGTGCCTTTT
CC-ATCACCTCCAACACGTCT--------------------------------------------GCATGTCACAACGCG
CTTACTTGTACTGCTCAC-TTTCACTCGGTCCGGCAAGAACATGTCAATTGTGA---GCTTGCCCGGAAGCCGGGCCATG
ATATACAGTATATTACTGTCTGAAGTCTGAAAA-AATGATGACTACAACACGTCGAACAGCTTGACCACTTCGTTGCCAT
GATCTTGGCGATGGAACCATCGTCGCGTACTGGCGTTGTCGACCACGGGACAGCGACATGCCGAGTTTTATAAACCCAAC
ACAATTGGTGGTGGTGGGTGCCTAACGAGACAAAACAAAATGCAGCGCTACTTCCAGGCAAGAACATACGTTGGTGTCAG
TGTCGGAGCCAGGAATTTGCTCCTTGGTATTCTTTTCTTTTTGAAAAAAAGCATGTTTTTGGTCTCTCAAGTTTTC-AAA
AGCATAGACTTGGTCCCTTAAGATTTTTC--GATAGGCATTTGGTCCTTCAAGTCTCAAAACCAAATAAGTTTGATCCGA
AACGAGATTTTTGAGCACG---------TTGACCGCGTTTGACCTGGTTGACCAGGTTTGACCAGTGAAAAATAAATTCA
A--AAAAATAGCGAACACTTTCAAAAATATCTGAAATTTTGTAACAACCAAGATGCTTGGGTGCACTCGGTGCGGGT-AA
TTTTTGTGGTCAAATAATATCCGAGGAGCTCTCAAAACATAT----------------TTTATTTTTTTAGCCAAAATTT
GTTTT----TTTTGCCACGAGCTCCTCGAATGTCGAAACACCACATAAATTTTCACGCACCTAGCG---------CACCC
AAGCATCTTGGTTGCCACCAATTTTC--AGTT----------TTTTTTGCTATTTTT-TGAATGTACAGTTCATCGGTCA
AACCAGGTCAA----------CGTGGGTCAAAATCTGGTTTTGGATAGAACTTATCTGGTTTTGAGACTTGAA
>chr4B_1
GACGAACTTGGGGCAGCTGAGGGAGTCCGGGCTTACGGGTATCGTTTACAGAGAGT------------------------
------ATTGGGACTTGGCACACACCCTAGACATGGTCGCGGTTGTCAAGGAGAACTCGGACCACGCCGTCGAATGAGGG
TGGTCCGCGGCAGAAGCTCGGGGGCGCGCTCGGGGCGACGACGGCTGTGATGGGTGGAGGAGGACAACTTTTTCTGATAC
CCTATTTTACATCATTTGCTGCGACAGAAAATTTCTGATGCCCTAAAACCGCCTCTCTGTCCTGCCCTAAAACTTTTTAA
AATGTTCGATTTTGCCTCTACCGCGTCTCTCCTGCCC-------------------------------------------
------------------------------------------------------------------------------TA
AAGCCGCGTTATCCGCGCCGGGTGCTCCGGCGCGCGCGATGGCGACGCAACGCGCAACT-GGGCACGTCCCAATCGTCCC
AACCCAGAGCCACGCGCTCGGCATCGTCGTGCACTCGTGCCCGTGTCCATG------------------TCCGTCCCAGT
GC-AAACACCGCGTGTCTCTACAACCTACACGTCTCGACAACT-----------------------------GCTTGACG
AGTTATTATGGTGAGCTCTCCAGCCGGCGGAGCCAAGTCAGAGACGAAATCAATGGAAAGTTGGAAAAAAGAAGAAGGAT
ACAAAAACATGGACGAGTGGCGGACAG-GGGAGCGGGTCCGGGACGCGGCCCCC-GTCTGTCGCTTTCCGTCACCCCCTG
TCCTCCGCTGCCTGGCCCGGTCCAACGGCTACCCCGAGACAGCCAGCTCCAACCTCCAACGGCTCGACCCGCCCACGATC
CCGTCTCCTAGTATAAACCACCTCGCCGCGCCCTCCCCACGGAACCCACTCCCACACCCAAGACCAACGCGTCCAAAGCA
GCAGAGGAGTCCAAGAACCAGAGCACCGAGGGAAGGAAGCGCTATCTCCTCCATGGCCGGCTGCTGCGTCTTCCTCCGGC
GGCCGTCGACCTCCTCCGCCCACCGCCTCGGCTACCACTCCCTGGACGGCGACCACGAG---GCCGGCCCGCCCCCGG--
-C---GGCGACGGTGACGGTGGTGGTCGGCAAGGAGCGGCGGGTTTTCGCCGTGGACCAGCTGGTGCTCGACACCTACCC
GTTCCGGGTGCTCCTGGAGACGGCGGCGCGGAAGGAGGAGCGCAGGAGCAAGGCCCTCTTCGTGGACGTCGACGCCATCC
TCTTCGAGCACATCCTCTGGCTCGCCGGCTGCCACGATCGCTCCGCCGTCTCCCTCCTCCAGCCCGACCTCAAGGACATC
ATCGACTTCTACTCCCAGGACGCCTGAAGACGATCATCTCATCACATTC----TTCTTCAGTCGGCCCATTCTTTTATTT
TTCTTCTTCTTCTT----TTCCTGATGCTAATGTTCATAATGT--------TCAGATCATCTGTTATAAGTTACGACAGT
GAAATGGGAAATACTATA---AATTATAGAAATATATATATATATATATCTATTCATCGCTAGTGAATCTCGATGCACCG
CAGCTGTCCTTCTAGTTGCTGGCGCGCACGTCCGTCTGAACATTCATTCACTCTTGAGCTTGTGATCTCCTGTTATTTTT
CATATCATCTCCAACACGTCTGCATGTACGTGTGCGCGTGCTTAGTTTAGTAGGCGAGGAGAACAGCATGTCACAACGCG
CTTACTTGTACTGGTCACTTTTCACTCGGTCCGGCAAGAACATGTCAATTGCTA---GCTTGCTCAGAAGCCGCGCCACC
ATGATA--TATATCACTCTCTGGAGTCTGAAAAAAATGATGGCAATAACACGTCGAACAGCTTGACCATTTCGTCGCCAT
GATCTTGGCGATGGAACCATCGTCGCGCTGC--------CGACCAC-GGACAGCGACATGCCGAGTTTTATAAACCCAGC
ACCATTGGT------GGGTGCCTAACGAGACAAAACAAAATGCAGCGCTACTTCCAGGCCAG------------------
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>chr4A_479
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AAGGCGTGTTATCCGCACCGCGTACTCGGGCGCGCGCGATGGCGATGCAACGCGCAACGGGGGCACGTCACAATCGTCAC
AACCCACGGCCACGCGCTCGGCATCGTCGTGCCCGTGTGGCCGTGAC--------GAACAGCCCACCACTCCGTCCCAGC
GC-AAACACCGCGTGTCTCCACAGCCTACACGTCTCGACAACC-----------------------------ACTTGACG
AGTTATCACGGTGAGCTCTCCAGCCGGCGGGGCCAAGTCAGAGACGAGATCGACGGAGAAGAGGAAAAAGGAAGAAGGAT
AGAGAAACACGGACGAGTGGCGGACAGAGGGAGCTGGTCCAGGACGCGGCCCCC-GCCTGTCCCTTTCCATGACCCCCTG
TCCTGCGCCGCCTGGCCCGGTCCAACGGCTACCCCGAGACACCCAGCTCCAACCTCCAACGGCTCGACCCGCCCACGATC
CCGTCTCCCAGTATAAACCACCTCGCCGCGCCCT-CCCACGGAACCCACTCCCACGCCCACCCCCAACGCGTCCACAGAA
TCACAGGAGTCGTCCAAG--------------AAAGAAGCACTCG-----CCATGGCCGGCTGCTGCGTCTTCCTCCGGC
GGCCGTCGACCGCGTCCGCCTACCGCCTCGGGTACCACTCCCTCGACGGCGACCAGGAGGCCGCCGGCCCGCCCCCGCCC
CC---GGCGACGGTGACGGTGGTGGTCGGGAAGGAGCGGCGGGTGTTCGCGGTGGACCAGCTGGTGCTCGACACCTACCC
GTTCCGGGTGCTCCTGGAGACGGCGGCCAGGAAGGAGGAGCGCAGGGGTAAGGCCCTCTTCGTGGACGTGGACGCCATCC
TCTTCGAGCACATCCTCTGGCTCGCCGGCTGCCACGACCGCTCCGCCGTCTCCCTTCTCCAGCCCGACCTCCAGGACATC
ATCGACTTCTACTCCCAGGACGCCTGAAGACCATCATCTCATCACATTCTTTGTTGTTCAGTCTACCCATTCTTTTATTT
TTCTTCCTCTTCTT----TTCCAGATGCTAGTGTGCATAATGT--------TCAGATCATCTGTTATAAGTTACGACAGT
GAGATGAAAAATACTATAGTAAATTATAGAAAGA---------ATAAATCTCTTGGTCGCTACTGAACCTCGATGCATTG
CAGCTGTCTTCCTAGTTGCTGGCACGCACGTCCTTCATCTGAACA--------------TTTTGATCTCCTGTTCTTTTT
CC-ATCATCTCCAACGCGTCT--------------------------------------------GCATGTCACAACGCG
CTTACTTGTACTGCTCAC-TTTCACTCGGTCCGGCAAGAACATGTCAACTGTCCACTGCTTGCTCAGAAGCCGGGCCACC
ATGATA--TATGTTACTCTCTGAAGTCTGAAAA-AATGGTGAC-ACAACACGTCGAACAGCTTGACCACTTCGCTGCCAT
GATCTTGGCGATGGAACCATAGTCGCGTTGC--------CGACCACGGGACAGCGACATGCCGAGTTTTATAAACCCAGC
ACGATTGGT------GGGTGCCTAACGAGACAAAA-----TGCAGCGCTACTTCCAGGCAAGAACATCCGTTGGTGT---
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>chr4B_2122
AAAGAA--------------------------------------------------------------------------
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------------------------------------------------AAGTACGTTGTTGGTCCCTCAAGTTCTCTAAA
AGTATAAACTTGGTCCCTCAAGATTTTTTTTGATAGACATTTAGCCTTTCAAGTAACAAAACAGGATAAGTTTGGTCCAA
AACAAGATTTTGAGCTTG-----------TGACCGGGTTTGACCATGTTGACCAGGTTTGACTGGTGAATGGTAAATTTA
AATAAAA-TAGAAAACAAATTATGAAATTTTTGAAATTTTGTGACAACCAAAATTATTGGGTGCGCTAGGTATGTGTCAA
TTTTTGTGGTCAAATAATATCCGAGGAGCTC----AATAAAAACAA-------TTGGCTTTCTTTTGCAACCCAAAATTT
GTTTTATTCTTTTGCTATGAGCTCCTCGAATGTAAAAAAATCACACAAAAATTCGTGGTCCTAGAG---------CACCC
AAGCATCTTGGTTGCCACAAAATTTT--AGTTTATTTATTTATTTATTGCTATTTTTCTGAATTTACCGTTCATTGGTTA
AACCCGGCCAA----------CATGG-TTTAAATCTAGTTTTGGACGAAACTTATCTGATTTTGAGACTTGAA
>chr2B_2125
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----------------------------------------------AAAAGTATATTTTTGTTCCCCAAGTTTCTC--AA
AGTATAGACTT--TTTCTTAAGATTTTTA--GGTATATATTTGGTCCTTCAAGTCTCAAAACGGGATAAGTTTGGTTCAA
AACCAGATTTTGAGCACGTTGACCTAGTTTGACCTGGTTTGACCATGTTGACCAAGTTTGACCAATGAATAGTAAATTCG
A--AAAA-TAGCAAACAAATTCAAAAAAACTGAAATTTTGTGACAT--CAACATGCTTGGGTGCGTTTGGTGCGTGTAAA
TTGTTGTGGCCAAATAACATCTGAGGAGCTCTAGATTTTTTT----------------TCTTTTTTGTGGGCCAAAATTA
GTTTTTTTTTTTTGCCAAGAGCTCCTCAGATGTCGAAACACCACATAAATTTTCA---------CG---------CACCC
AAGCATCTTGGTTGCCACAAAATTTCGGAGTTTTTGTTGAACTTTTTTGCTATTTTT-TGAATTTACTGTTCATCAGTCA
AACATGGTCAAACCAGGCCAACGTGC-TTAAAATCTGGTTTTGGACCAAACTTATCCGGTTTTGAGACTTGAA
>chr3A_2125
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----------------------------------------------AAAAGTATATTTTTGGTCCCTCAAGTTCTCCAAA
AGTATAGAATTGGTTCCTCAAGATTTTTT--GGTAGACATTC-GTCCTTCAAGTCTCAAAACCGGATAAGTTTGGTCCAA
AACCAGATTTTGAGCACATTGGT-----------------------------CGGGTTTGACCAATGAACAATAAAATAG
A--AAAACTAGCAAACAAATTTAAAAAAATTTAAATTTTTGTAACAACCAAGATGCTTGGGTGCGCTAGGTGCGTGTAAA
ATTTTGTGGTCAAATAACAACCGATGAACTTTAGCAAAAAAAACAAACAAATTTTGGCATTTTTTTGTGAGCCAAAATTT
GTTTTTTTTT-----CATGAGCTCCTCGATTGTCAAAACATTATAAAAACTTTCA---------CGTACGTAACACACCC
AAGCATCTTGGTTGCCACAAATTTCAGGATTTTTTTAATTTGTTTGC-----TTTTT-CTAATTTACTGTTCATCGTGCA
AACCTGGTCAA----------CATGG-TCAAAATCTGGTTTAGGGCGAAACTTGTCCTGTTTTGAGACTTAAA
>SNPs
---------------------------------------S---S--S-S----S--SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-----------------------------------------------S-----------S--S-----------
-----S--------------------------S-------------S--S-----------------------S----S-
------------S---------SSS-S------SS-----------------S--S--S----------S-S----S-SS
S-SSSSS-SS-S--S-SS---SS---SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
----------------S----------------S------------------------------------SS--------
----------------------------------------------SSSS-SSSS------S------------------
--S----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-------S-----------------------------------------------------S------------------
------------------------------------------------------S---------------S---------
------------S---------------------------S----------S----------------------------
---------------------------------------SS--------------------S------------------
-------------------S-----------S----------S-------------------------------------
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--SSS----S----------------------------------------------------------------------
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---------------------------------------------S----------------------------------
--------------SSSS--SS-----------------S--SSSSSSSSS-------------S-S-S-----------
-----------S--------------------S-----------------------------------------------
-------------S-----------------------------------------------------------S-S----
-------S------------------------------------------------------------------------
----------------------------------------------------S----------S-S------------SS
--SSSSSS---------S-------------------------S------------------------------------
----------------------------SSSSSSSSSSS---------------------------------------S-
--S------SSSSSS----------------------------------------------------S---------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S------------S--------S------
--S-------------------------S-------S--------------------------SS---------S---S-
---S-------SSSSSSSS----------------S--------SS-----------------------S----------
-------S----S----SS-----------S---------------------------------S--S------S-----
--------------------------------SS---S-----------------------S----S-S-----------
-----------------S-------------------------------------S-SS---------------------
------------------S--------------------------------------------S---S------------
----S---------------------S------------------SSS-------------------------
>forward_63
-------------------------------------------ATTGAGAGAGCGTCCCTCCT-----------------
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>reverse_2094
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-------------GTGGGTGCCTAACGAGACAA-----------------------------------------------
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