Multiple sequence alignment - TraesCS4D01G280000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G280000 chr4D 100.000 3350 0 0 1 3350 451164396 451167745 0.000000e+00 6187.0
1 TraesCS4D01G280000 chr4D 75.316 1422 245 53 1017 2395 454439597 454438239 4.820000e-163 584.0
2 TraesCS4D01G280000 chr4D 75.613 734 147 15 1015 1735 454809754 454809040 5.360000e-88 335.0
3 TraesCS4D01G280000 chr4D 93.243 74 3 2 1 73 416431789 416431861 1.270000e-19 108.0
4 TraesCS4D01G280000 chr4B 88.778 2299 135 55 278 2505 564381430 564383676 0.000000e+00 2702.0
5 TraesCS4D01G280000 chr4B 84.260 845 59 33 2545 3341 564383673 564384491 0.000000e+00 756.0
6 TraesCS4D01G280000 chr4B 74.594 1417 258 52 1017 2395 567192844 567191492 2.290000e-146 529.0
7 TraesCS4D01G280000 chr4A 95.565 992 35 2 954 1936 15784256 15783265 0.000000e+00 1580.0
8 TraesCS4D01G280000 chr4A 90.878 866 49 7 2023 2879 15783255 15782411 0.000000e+00 1134.0
9 TraesCS4D01G280000 chr4A 81.833 622 58 36 66 642 15792125 15791514 3.910000e-129 472.0
10 TraesCS4D01G280000 chr4A 74.027 1105 206 45 1335 2395 13585429 13586496 3.160000e-100 375.0
11 TraesCS4D01G280000 chr4A 76.138 725 150 12 1015 1735 13524986 13525691 3.180000e-95 359.0
12 TraesCS4D01G280000 chr4A 76.236 728 135 21 1015 1735 13150721 13151417 5.320000e-93 351.0
13 TraesCS4D01G280000 chr4A 82.576 396 45 18 2957 3340 15778319 15777936 8.960000e-86 327.0
14 TraesCS4D01G280000 chr4A 83.553 152 13 7 727 875 15790877 15790735 7.540000e-27 132.0
15 TraesCS4D01G280000 chr4A 94.444 36 1 1 3147 3182 15778094 15778060 2.000000e-03 54.7
16 TraesCS4D01G280000 chr3D 84.009 1407 184 29 1008 2390 435489208 435487819 0.000000e+00 1314.0
17 TraesCS4D01G280000 chr3D 88.679 53 4 2 427 478 578532023 578531972 2.790000e-06 63.9
18 TraesCS4D01G280000 chr6D 95.775 71 2 1 1 70 94757249 94757179 2.730000e-21 113.0
19 TraesCS4D01G280000 chr6D 95.652 69 2 1 1 68 466012903 466012835 3.530000e-20 110.0
20 TraesCS4D01G280000 chr6D 79.070 129 16 8 398 515 406640828 406640956 9.970000e-11 78.7
21 TraesCS4D01G280000 chr7D 92.405 79 4 1 4 80 134485834 134485756 9.830000e-21 111.0
22 TraesCS4D01G280000 chr5A 95.652 69 3 0 4 72 654405804 654405872 9.830000e-21 111.0
23 TraesCS4D01G280000 chr3A 95.714 70 2 1 1 69 730649945 730650014 9.830000e-21 111.0
24 TraesCS4D01G280000 chr3A 88.679 53 4 2 427 478 714090287 714090338 2.790000e-06 63.9
25 TraesCS4D01G280000 chr2A 94.521 73 3 1 1 72 575349088 575349016 9.830000e-21 111.0
26 TraesCS4D01G280000 chr1B 94.444 72 3 1 1 71 566621981 566621910 3.530000e-20 110.0
27 TraesCS4D01G280000 chr7B 90.361 83 6 2 1 82 741240033 741239952 1.270000e-19 108.0
28 TraesCS4D01G280000 chr3B 74.779 226 38 15 427 641 772231466 772231683 2.140000e-12 84.2
29 TraesCS4D01G280000 chr3B 94.595 37 1 1 442 478 771862139 771862174 4.670000e-04 56.5
30 TraesCS4D01G280000 chr3B 94.595 37 1 1 442 478 771866189 771866224 4.670000e-04 56.5
31 TraesCS4D01G280000 chr3B 94.595 37 1 1 442 478 771870243 771870278 4.670000e-04 56.5
32 TraesCS4D01G280000 chr3B 94.595 37 1 1 442 478 771872997 771873032 4.670000e-04 56.5
33 TraesCS4D01G280000 chr1A 94.595 37 1 1 116 151 14631475 14631511 4.670000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G280000 chr4D 451164396 451167745 3349 False 6187 6187 100.0000 1 3350 1 chr4D.!!$F2 3349
1 TraesCS4D01G280000 chr4D 454438239 454439597 1358 True 584 584 75.3160 1017 2395 1 chr4D.!!$R1 1378
2 TraesCS4D01G280000 chr4D 454809040 454809754 714 True 335 335 75.6130 1015 1735 1 chr4D.!!$R2 720
3 TraesCS4D01G280000 chr4B 564381430 564384491 3061 False 1729 2702 86.5190 278 3341 2 chr4B.!!$F1 3063
4 TraesCS4D01G280000 chr4B 567191492 567192844 1352 True 529 529 74.5940 1017 2395 1 chr4B.!!$R1 1378
5 TraesCS4D01G280000 chr4A 15782411 15784256 1845 True 1357 1580 93.2215 954 2879 2 chr4A.!!$R2 1925
6 TraesCS4D01G280000 chr4A 13585429 13586496 1067 False 375 375 74.0270 1335 2395 1 chr4A.!!$F3 1060
7 TraesCS4D01G280000 chr4A 13524986 13525691 705 False 359 359 76.1380 1015 1735 1 chr4A.!!$F2 720
8 TraesCS4D01G280000 chr4A 13150721 13151417 696 False 351 351 76.2360 1015 1735 1 chr4A.!!$F1 720
9 TraesCS4D01G280000 chr4A 15790735 15792125 1390 True 302 472 82.6930 66 875 2 chr4A.!!$R3 809
10 TraesCS4D01G280000 chr3D 435487819 435489208 1389 True 1314 1314 84.0090 1008 2390 1 chr3D.!!$R1 1382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 1556 0.185658 TATACCCCCGATCGACACCA 59.814 55.0 18.66 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2783 3487 0.746659 GCAGAGGTTGTGGCAAGTTT 59.253 50.0 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.981102 GTCAACTTTAAGATAGTTTGACCCT 57.019 36.000 11.79 0.00 33.73 4.34
25 26 8.030744 GTCAACTTTAAGATAGTTTGACCCTC 57.969 38.462 11.79 0.00 33.73 4.30
26 27 7.119407 GTCAACTTTAAGATAGTTTGACCCTCC 59.881 40.741 11.79 0.00 33.73 4.30
27 28 6.697641 ACTTTAAGATAGTTTGACCCTCCA 57.302 37.500 0.00 0.00 0.00 3.86
28 29 7.086685 ACTTTAAGATAGTTTGACCCTCCAA 57.913 36.000 0.00 0.00 0.00 3.53
29 30 6.940867 ACTTTAAGATAGTTTGACCCTCCAAC 59.059 38.462 0.00 0.00 0.00 3.77
30 31 4.993705 AAGATAGTTTGACCCTCCAACA 57.006 40.909 0.00 0.00 0.00 3.33
31 32 4.993705 AGATAGTTTGACCCTCCAACAA 57.006 40.909 0.00 0.00 0.00 2.83
32 33 5.319043 AGATAGTTTGACCCTCCAACAAA 57.681 39.130 0.00 0.00 0.00 2.83
33 34 5.316987 AGATAGTTTGACCCTCCAACAAAG 58.683 41.667 0.00 0.00 34.86 2.77
34 35 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
35 36 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
36 37 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
37 38 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
38 39 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
39 40 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
40 41 3.230976 GACCCTCCAACAAAGTTGGAAT 58.769 45.455 26.25 17.26 46.85 3.01
41 42 3.641436 GACCCTCCAACAAAGTTGGAATT 59.359 43.478 26.25 16.08 46.85 2.17
42 43 4.810345 ACCCTCCAACAAAGTTGGAATTA 58.190 39.130 26.25 9.67 46.85 1.40
43 44 4.587262 ACCCTCCAACAAAGTTGGAATTAC 59.413 41.667 26.25 0.00 46.85 1.89
44 45 4.586841 CCCTCCAACAAAGTTGGAATTACA 59.413 41.667 26.25 8.75 46.85 2.41
45 46 5.508994 CCCTCCAACAAAGTTGGAATTACAC 60.509 44.000 26.25 0.00 46.85 2.90
46 47 5.301805 CCTCCAACAAAGTTGGAATTACACT 59.698 40.000 26.25 0.00 46.85 3.55
47 48 6.385649 TCCAACAAAGTTGGAATTACACTC 57.614 37.500 24.83 0.00 44.90 3.51
48 49 6.126409 TCCAACAAAGTTGGAATTACACTCT 58.874 36.000 24.83 0.00 44.90 3.24
49 50 6.605594 TCCAACAAAGTTGGAATTACACTCTT 59.394 34.615 24.83 0.00 44.90 2.85
50 51 7.123547 TCCAACAAAGTTGGAATTACACTCTTT 59.876 33.333 24.83 11.89 44.90 2.52
51 52 7.763985 CCAACAAAGTTGGAATTACACTCTTTT 59.236 33.333 21.24 6.75 42.06 2.27
52 53 9.796120 CAACAAAGTTGGAATTACACTCTTTTA 57.204 29.630 13.98 0.00 0.00 1.52
55 56 9.463443 CAAAGTTGGAATTACACTCTTTTAAGG 57.537 33.333 13.98 4.01 0.00 2.69
56 57 8.990163 AAGTTGGAATTACACTCTTTTAAGGA 57.010 30.769 0.00 0.00 0.00 3.36
57 58 8.392372 AGTTGGAATTACACTCTTTTAAGGAC 57.608 34.615 0.00 0.00 0.00 3.85
58 59 7.172703 AGTTGGAATTACACTCTTTTAAGGACG 59.827 37.037 0.00 0.00 0.00 4.79
59 60 5.935789 TGGAATTACACTCTTTTAAGGACGG 59.064 40.000 0.00 0.00 0.00 4.79
60 61 6.168389 GGAATTACACTCTTTTAAGGACGGA 58.832 40.000 0.00 0.00 0.00 4.69
61 62 6.313164 GGAATTACACTCTTTTAAGGACGGAG 59.687 42.308 0.00 0.00 0.00 4.63
62 63 3.679824 ACACTCTTTTAAGGACGGAGG 57.320 47.619 0.00 0.00 0.00 4.30
63 64 2.302157 ACACTCTTTTAAGGACGGAGGG 59.698 50.000 0.00 0.00 34.07 4.30
64 65 2.565834 CACTCTTTTAAGGACGGAGGGA 59.434 50.000 0.00 0.00 29.82 4.20
70 71 3.967467 TTAAGGACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
91 92 1.941377 AGGAAGCCAATGCAAATCCA 58.059 45.000 0.00 0.00 38.64 3.41
92 93 1.551883 AGGAAGCCAATGCAAATCCAC 59.448 47.619 0.00 0.00 38.64 4.02
93 94 1.275856 GGAAGCCAATGCAAATCCACA 59.724 47.619 0.00 0.00 41.13 4.17
94 95 2.340337 GAAGCCAATGCAAATCCACAC 58.660 47.619 0.00 0.00 41.13 3.82
95 96 1.340088 AGCCAATGCAAATCCACACA 58.660 45.000 0.00 0.00 41.13 3.72
96 97 1.001181 AGCCAATGCAAATCCACACAC 59.999 47.619 0.00 0.00 41.13 3.82
111 114 5.361427 TCCACACACCGGTATATGTTTATG 58.639 41.667 6.87 0.59 0.00 1.90
206 215 7.753659 TCTCTACGAAAAATGTTTGTGACAAA 58.246 30.769 6.66 6.66 42.62 2.83
605 650 8.831715 AAATGAAGATACCAAAACAATCCAAC 57.168 30.769 0.00 0.00 0.00 3.77
610 655 6.512297 AGATACCAAAACAATCCAACAACAC 58.488 36.000 0.00 0.00 0.00 3.32
753 1361 3.733960 CTCAGCGACCCGACGTGA 61.734 66.667 0.00 0.00 35.59 4.35
755 1363 3.103911 CAGCGACCCGACGTGAAC 61.104 66.667 0.00 0.00 35.59 3.18
756 1364 4.695231 AGCGACCCGACGTGAACG 62.695 66.667 0.00 0.40 46.33 3.95
757 1365 4.688419 GCGACCCGACGTGAACGA 62.688 66.667 10.26 0.00 43.02 3.85
758 1366 2.501222 CGACCCGACGTGAACGAG 60.501 66.667 10.26 3.20 43.02 4.18
759 1367 2.804090 GACCCGACGTGAACGAGC 60.804 66.667 10.26 0.39 43.02 5.03
760 1368 4.695231 ACCCGACGTGAACGAGCG 62.695 66.667 10.26 11.99 43.02 5.03
761 1369 4.394078 CCCGACGTGAACGAGCGA 62.394 66.667 18.73 0.00 43.02 4.93
762 1370 2.427905 CCGACGTGAACGAGCGAA 60.428 61.111 18.73 0.00 43.02 4.70
825 1433 1.139095 CGCCCTTACACGACTCCTC 59.861 63.158 0.00 0.00 0.00 3.71
826 1434 1.516423 GCCCTTACACGACTCCTCC 59.484 63.158 0.00 0.00 0.00 4.30
840 1448 4.409187 GACTCCTCCTATTAGGAATCGGT 58.591 47.826 13.41 9.61 45.28 4.69
881 1501 5.221986 ACAAATTAGGAATCGGTATACCCCC 60.222 44.000 16.47 11.80 0.00 5.40
883 1503 2.322339 AGGAATCGGTATACCCCCTC 57.678 55.000 16.47 9.37 0.00 4.30
884 1504 1.506418 AGGAATCGGTATACCCCCTCA 59.494 52.381 16.47 0.00 0.00 3.86
885 1505 2.090380 AGGAATCGGTATACCCCCTCAA 60.090 50.000 16.47 0.00 0.00 3.02
906 1526 4.804608 AAAAACAAAATTTAGCACGCCC 57.195 36.364 0.00 0.00 0.00 6.13
909 1529 2.235016 ACAAAATTTAGCACGCCCTCA 58.765 42.857 0.00 0.00 0.00 3.86
910 1530 2.825532 ACAAAATTTAGCACGCCCTCAT 59.174 40.909 0.00 0.00 0.00 2.90
911 1531 4.013728 ACAAAATTTAGCACGCCCTCATA 58.986 39.130 0.00 0.00 0.00 2.15
912 1532 4.644685 ACAAAATTTAGCACGCCCTCATAT 59.355 37.500 0.00 0.00 0.00 1.78
913 1533 5.825679 ACAAAATTTAGCACGCCCTCATATA 59.174 36.000 0.00 0.00 0.00 0.86
914 1534 6.490040 ACAAAATTTAGCACGCCCTCATATAT 59.510 34.615 0.00 0.00 0.00 0.86
915 1535 6.500684 AAATTTAGCACGCCCTCATATATG 57.499 37.500 6.36 6.36 0.00 1.78
919 1539 6.731292 TTAGCACGCCCTCATATATGATAT 57.269 37.500 15.71 0.00 36.02 1.63
936 1556 0.185658 TATACCCCCGATCGACACCA 59.814 55.000 18.66 0.00 0.00 4.17
946 1566 3.181774 CCGATCGACACCATAAAATCGTC 59.818 47.826 18.66 0.00 35.47 4.20
948 1568 2.896168 TCGACACCATAAAATCGTCCC 58.104 47.619 0.00 0.00 36.03 4.46
1130 1750 2.430244 CGAGAACGACACCACCGG 60.430 66.667 0.00 0.00 42.66 5.28
1267 1898 2.037367 CCCAGGTCCACTCCTCGA 59.963 66.667 0.00 0.00 35.37 4.04
1696 2355 0.943835 CATCGTCACCTGCAACGTGA 60.944 55.000 11.30 11.30 39.78 4.35
1735 2394 0.969894 GACTCTCATCCCCATACCCG 59.030 60.000 0.00 0.00 0.00 5.28
2152 2844 2.589540 CTACCCTCGGCATTGGCA 59.410 61.111 11.10 0.00 43.71 4.92
2153 2845 1.149174 CTACCCTCGGCATTGGCAT 59.851 57.895 11.10 0.00 43.71 4.40
2154 2846 0.466189 CTACCCTCGGCATTGGCATT 60.466 55.000 11.10 0.00 43.71 3.56
2395 3090 2.159085 CCTAGATCTGTTCGGTGAACCC 60.159 54.545 5.18 0.00 41.35 4.11
2421 3116 6.475504 TGAACAGGATGAAGATTTTCTGCTA 58.524 36.000 0.00 0.00 39.69 3.49
2502 3197 8.289618 TCACATCTAGTTGTTGTTATTTGCTTC 58.710 33.333 3.61 0.00 0.00 3.86
2540 3235 4.695993 TGCCAGCGCACCGAATCA 62.696 61.111 11.47 0.00 41.12 2.57
2609 3304 8.340443 TGATCATCTCAATTTTTGATCGATGTC 58.660 33.333 0.54 12.24 44.71 3.06
2626 3321 1.001020 TCCATGCGTCCATTTGCCT 60.001 52.632 0.00 0.00 0.00 4.75
2718 3413 3.124636 GCACTACTACAATGGGTGTTTCG 59.875 47.826 0.00 0.00 41.98 3.46
2745 3446 3.122850 GCACACAGCCAAGCAACT 58.877 55.556 0.00 0.00 37.23 3.16
2806 3510 0.111061 TTGCCACAACCTCTGCATCT 59.889 50.000 0.00 0.00 33.08 2.90
2835 3539 1.066152 CCTCGTACGGGCTAGGTAAAC 59.934 57.143 16.52 0.00 0.00 2.01
2855 3559 2.431782 ACAACATTGGCAAAGCTTCTGT 59.568 40.909 3.01 0.00 0.00 3.41
2861 3565 3.207265 TGGCAAAGCTTCTGTTGTCTA 57.793 42.857 0.00 0.00 30.58 2.59
2862 3566 3.550820 TGGCAAAGCTTCTGTTGTCTAA 58.449 40.909 0.00 0.00 30.58 2.10
2890 3597 3.120199 CCCAAGCATTACTCAACGAGTTG 60.120 47.826 9.51 9.51 40.28 3.16
2903 3610 6.114221 TCAACGAGTTGAACCAAAAAGTAG 57.886 37.500 15.39 0.00 45.56 2.57
2904 3611 4.547406 ACGAGTTGAACCAAAAAGTAGC 57.453 40.909 0.00 0.00 0.00 3.58
2905 3612 4.196971 ACGAGTTGAACCAAAAAGTAGCT 58.803 39.130 0.00 0.00 0.00 3.32
2906 3613 4.035208 ACGAGTTGAACCAAAAAGTAGCTG 59.965 41.667 0.00 0.00 0.00 4.24
2907 3614 4.554723 CGAGTTGAACCAAAAAGTAGCTGG 60.555 45.833 0.00 0.00 36.24 4.85
2908 3615 4.532834 AGTTGAACCAAAAAGTAGCTGGA 58.467 39.130 0.00 0.00 34.16 3.86
2909 3616 4.580580 AGTTGAACCAAAAAGTAGCTGGAG 59.419 41.667 0.00 0.00 34.16 3.86
2910 3617 4.164843 TGAACCAAAAAGTAGCTGGAGT 57.835 40.909 0.00 0.00 34.16 3.85
2911 3618 5.298989 TGAACCAAAAAGTAGCTGGAGTA 57.701 39.130 0.00 0.00 34.16 2.59
2912 3619 5.061179 TGAACCAAAAAGTAGCTGGAGTAC 58.939 41.667 0.00 0.00 34.16 2.73
2913 3620 4.976540 ACCAAAAAGTAGCTGGAGTACT 57.023 40.909 0.00 0.00 34.16 2.73
2914 3621 6.042322 TGAACCAAAAAGTAGCTGGAGTACTA 59.958 38.462 0.00 0.00 34.16 1.82
2915 3622 6.429521 ACCAAAAAGTAGCTGGAGTACTAA 57.570 37.500 0.00 0.00 34.16 2.24
2916 3623 6.228995 ACCAAAAAGTAGCTGGAGTACTAAC 58.771 40.000 0.00 0.00 34.16 2.34
2917 3624 6.183361 ACCAAAAAGTAGCTGGAGTACTAACA 60.183 38.462 0.00 0.00 34.16 2.41
2918 3625 6.147328 CCAAAAAGTAGCTGGAGTACTAACAC 59.853 42.308 0.00 0.00 30.26 3.32
2919 3626 6.667558 AAAAGTAGCTGGAGTACTAACACT 57.332 37.500 0.00 2.09 30.26 3.55
2959 3666 4.493547 TGGTTTCAAAAGCTTGTCTTGTG 58.506 39.130 0.00 0.00 40.64 3.33
2960 3667 4.219507 TGGTTTCAAAAGCTTGTCTTGTGA 59.780 37.500 0.00 0.00 45.02 3.58
2961 3668 4.562789 GGTTTCAAAAGCTTGTCTTGTGAC 59.437 41.667 0.00 4.82 46.03 3.67
2962 3669 5.402398 GTTTCAAAAGCTTGTCTTGTGACT 58.598 37.500 0.00 0.00 46.03 3.41
2963 3670 4.882671 TCAAAAGCTTGTCTTGTGACTC 57.117 40.909 0.00 0.00 42.58 3.36
2968 3679 6.406692 AAAGCTTGTCTTGTGACTCTACTA 57.593 37.500 0.00 0.00 43.29 1.82
2978 3689 7.819900 GTCTTGTGACTCTACTAATGGTTTCAT 59.180 37.037 0.00 0.00 39.94 2.57
3017 3728 2.185310 ATCAGGTGAACGCCCAGTCC 62.185 60.000 0.48 0.00 0.00 3.85
3019 3730 2.224159 AGGTGAACGCCCAGTCCAT 61.224 57.895 0.48 0.00 0.00 3.41
3031 3742 1.048601 CAGTCCATATGCTACCCGGT 58.951 55.000 0.00 0.00 0.00 5.28
3038 3749 5.027460 TCCATATGCTACCCGGTATTGTAT 58.973 41.667 0.00 0.00 0.00 2.29
3048 3759 3.250744 CCGGTATTGTATACTGATGCCG 58.749 50.000 26.52 26.52 44.96 5.69
3065 3776 2.189521 GGTGGCCGACTATGGTGG 59.810 66.667 0.00 0.00 0.00 4.61
3110 3821 1.682451 CGCCACCCTCGATTTCCCTA 61.682 60.000 0.00 0.00 0.00 3.53
3175 3920 0.758123 ATCTGCCCTAGCTCTGCTTC 59.242 55.000 0.00 0.00 40.44 3.86
3183 3928 3.196685 CCCTAGCTCTGCTTCTAACAAGT 59.803 47.826 0.00 0.00 40.44 3.16
3209 3954 1.542547 CCGGCTTGTACTGTGAAAGGT 60.543 52.381 0.00 0.00 0.00 3.50
3214 3959 3.303132 GCTTGTACTGTGAAAGGTGAACG 60.303 47.826 0.00 0.00 0.00 3.95
3281 4026 5.978934 GAGTTAACTCTGACGGTGAAAAA 57.021 39.130 25.30 0.00 39.81 1.94
3284 4029 6.110707 AGTTAACTCTGACGGTGAAAAAGAA 58.889 36.000 1.12 0.00 0.00 2.52
3285 4030 6.258068 AGTTAACTCTGACGGTGAAAAAGAAG 59.742 38.462 1.12 0.00 0.00 2.85
3287 4032 4.766375 ACTCTGACGGTGAAAAAGAAGAA 58.234 39.130 0.00 0.00 0.00 2.52
3288 4033 5.183228 ACTCTGACGGTGAAAAAGAAGAAA 58.817 37.500 0.00 0.00 0.00 2.52
3290 4035 6.150474 ACTCTGACGGTGAAAAAGAAGAAAAA 59.850 34.615 0.00 0.00 0.00 1.94
3292 4037 6.015027 TGACGGTGAAAAAGAAGAAAAACA 57.985 33.333 0.00 0.00 0.00 2.83
3293 4038 6.090129 TGACGGTGAAAAAGAAGAAAAACAG 58.910 36.000 0.00 0.00 0.00 3.16
3294 4039 6.020971 ACGGTGAAAAAGAAGAAAAACAGT 57.979 33.333 0.00 0.00 0.00 3.55
3311 4056 8.424274 AAAAACAGTTTCTAGCCATTTTCTTG 57.576 30.769 0.00 0.00 0.00 3.02
3341 4086 1.460504 GTAAAGGTTGCTAGCCCCAC 58.539 55.000 19.45 10.82 0.00 4.61
3342 4087 0.035820 TAAAGGTTGCTAGCCCCACG 60.036 55.000 19.45 0.00 0.00 4.94
3343 4088 2.064242 AAAGGTTGCTAGCCCCACGT 62.064 55.000 19.45 9.89 0.00 4.49
3344 4089 2.033602 GGTTGCTAGCCCCACGTT 59.966 61.111 13.29 0.00 0.00 3.99
3345 4090 1.602605 GGTTGCTAGCCCCACGTTT 60.603 57.895 13.29 0.00 0.00 3.60
3346 4091 1.176619 GGTTGCTAGCCCCACGTTTT 61.177 55.000 13.29 0.00 0.00 2.43
3347 4092 1.525941 GTTGCTAGCCCCACGTTTTA 58.474 50.000 13.29 0.00 0.00 1.52
3348 4093 2.089201 GTTGCTAGCCCCACGTTTTAT 58.911 47.619 13.29 0.00 0.00 1.40
3349 4094 1.745232 TGCTAGCCCCACGTTTTATG 58.255 50.000 13.29 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.166167 GGAGGGTCAAACTATCTTAAAGTTGA 58.834 38.462 0.00 0.00 37.26 3.18
2 3 6.940298 TGGAGGGTCAAACTATCTTAAAGTTG 59.060 38.462 0.00 0.00 37.26 3.16
5 6 6.940298 TGTTGGAGGGTCAAACTATCTTAAAG 59.060 38.462 0.00 0.00 0.00 1.85
6 7 6.843752 TGTTGGAGGGTCAAACTATCTTAAA 58.156 36.000 0.00 0.00 0.00 1.52
7 8 6.442541 TGTTGGAGGGTCAAACTATCTTAA 57.557 37.500 0.00 0.00 0.00 1.85
8 9 6.442541 TTGTTGGAGGGTCAAACTATCTTA 57.557 37.500 0.00 0.00 0.00 2.10
9 10 4.993705 TGTTGGAGGGTCAAACTATCTT 57.006 40.909 0.00 0.00 0.00 2.40
10 11 4.993705 TTGTTGGAGGGTCAAACTATCT 57.006 40.909 0.00 0.00 0.00 1.98
11 12 5.070685 ACTTTGTTGGAGGGTCAAACTATC 58.929 41.667 0.00 0.00 0.00 2.08
12 13 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
13 14 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
14 15 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
15 16 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
16 17 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
17 18 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
18 19 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
19 20 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
24 25 6.126409 AGAGTGTAATTCCAACTTTGTTGGA 58.874 36.000 23.38 23.38 46.08 3.53
25 26 6.391227 AGAGTGTAATTCCAACTTTGTTGG 57.609 37.500 19.97 19.97 40.87 3.77
26 27 8.702163 AAAAGAGTGTAATTCCAACTTTGTTG 57.298 30.769 3.69 3.69 0.00 3.33
29 30 9.463443 CCTTAAAAGAGTGTAATTCCAACTTTG 57.537 33.333 0.00 0.00 0.00 2.77
30 31 9.416284 TCCTTAAAAGAGTGTAATTCCAACTTT 57.584 29.630 0.00 0.00 0.00 2.66
31 32 8.847196 GTCCTTAAAAGAGTGTAATTCCAACTT 58.153 33.333 0.00 0.00 0.00 2.66
32 33 7.172703 CGTCCTTAAAAGAGTGTAATTCCAACT 59.827 37.037 0.00 0.00 0.00 3.16
33 34 7.295930 CGTCCTTAAAAGAGTGTAATTCCAAC 58.704 38.462 0.00 0.00 0.00 3.77
34 35 6.428771 CCGTCCTTAAAAGAGTGTAATTCCAA 59.571 38.462 0.00 0.00 0.00 3.53
35 36 5.935789 CCGTCCTTAAAAGAGTGTAATTCCA 59.064 40.000 0.00 0.00 0.00 3.53
36 37 6.168389 TCCGTCCTTAAAAGAGTGTAATTCC 58.832 40.000 0.00 0.00 0.00 3.01
37 38 6.313164 CCTCCGTCCTTAAAAGAGTGTAATTC 59.687 42.308 0.00 0.00 0.00 2.17
38 39 6.171213 CCTCCGTCCTTAAAAGAGTGTAATT 58.829 40.000 0.00 0.00 0.00 1.40
39 40 5.338137 CCCTCCGTCCTTAAAAGAGTGTAAT 60.338 44.000 0.00 0.00 0.00 1.89
40 41 4.020839 CCCTCCGTCCTTAAAAGAGTGTAA 60.021 45.833 0.00 0.00 0.00 2.41
41 42 3.512724 CCCTCCGTCCTTAAAAGAGTGTA 59.487 47.826 0.00 0.00 0.00 2.90
42 43 2.302157 CCCTCCGTCCTTAAAAGAGTGT 59.698 50.000 0.00 0.00 0.00 3.55
43 44 2.565834 TCCCTCCGTCCTTAAAAGAGTG 59.434 50.000 0.00 0.00 0.00 3.51
44 45 2.832733 CTCCCTCCGTCCTTAAAAGAGT 59.167 50.000 0.00 0.00 0.00 3.24
45 46 2.832733 ACTCCCTCCGTCCTTAAAAGAG 59.167 50.000 0.00 0.00 0.00 2.85
46 47 2.898662 ACTCCCTCCGTCCTTAAAAGA 58.101 47.619 0.00 0.00 0.00 2.52
47 48 4.021916 TCTACTCCCTCCGTCCTTAAAAG 58.978 47.826 0.00 0.00 0.00 2.27
48 49 4.051661 TCTACTCCCTCCGTCCTTAAAA 57.948 45.455 0.00 0.00 0.00 1.52
49 50 3.744940 TCTACTCCCTCCGTCCTTAAA 57.255 47.619 0.00 0.00 0.00 1.52
50 51 3.967467 ATCTACTCCCTCCGTCCTTAA 57.033 47.619 0.00 0.00 0.00 1.85
51 52 4.202545 CCTTATCTACTCCCTCCGTCCTTA 60.203 50.000 0.00 0.00 0.00 2.69
52 53 3.436761 CCTTATCTACTCCCTCCGTCCTT 60.437 52.174 0.00 0.00 0.00 3.36
53 54 2.108601 CCTTATCTACTCCCTCCGTCCT 59.891 54.545 0.00 0.00 0.00 3.85
54 55 2.107901 TCCTTATCTACTCCCTCCGTCC 59.892 54.545 0.00 0.00 0.00 4.79
55 56 3.505480 TCCTTATCTACTCCCTCCGTC 57.495 52.381 0.00 0.00 0.00 4.79
56 57 3.834938 CTTCCTTATCTACTCCCTCCGT 58.165 50.000 0.00 0.00 0.00 4.69
57 58 2.559231 GCTTCCTTATCTACTCCCTCCG 59.441 54.545 0.00 0.00 0.00 4.63
58 59 2.901192 GGCTTCCTTATCTACTCCCTCC 59.099 54.545 0.00 0.00 0.00 4.30
59 60 3.577919 TGGCTTCCTTATCTACTCCCTC 58.422 50.000 0.00 0.00 0.00 4.30
60 61 3.708236 TGGCTTCCTTATCTACTCCCT 57.292 47.619 0.00 0.00 0.00 4.20
61 62 4.646572 CATTGGCTTCCTTATCTACTCCC 58.353 47.826 0.00 0.00 0.00 4.30
62 63 4.068599 GCATTGGCTTCCTTATCTACTCC 58.931 47.826 0.00 0.00 36.96 3.85
63 64 4.708177 TGCATTGGCTTCCTTATCTACTC 58.292 43.478 0.00 0.00 41.91 2.59
64 65 4.778213 TGCATTGGCTTCCTTATCTACT 57.222 40.909 0.00 0.00 41.91 2.57
70 71 3.195396 GTGGATTTGCATTGGCTTCCTTA 59.805 43.478 0.00 0.00 41.91 2.69
91 92 6.174760 ACAACATAAACATATACCGGTGTGT 58.825 36.000 19.93 16.35 0.00 3.72
92 93 6.671614 ACAACATAAACATATACCGGTGTG 57.328 37.500 19.93 15.66 0.00 3.82
93 94 9.480053 GTATACAACATAAACATATACCGGTGT 57.520 33.333 19.93 14.51 0.00 4.16
94 95 9.478768 TGTATACAACATAAACATATACCGGTG 57.521 33.333 19.93 2.00 31.43 4.94
182 191 7.962934 TTTGTCACAAACATTTTTCGTAGAG 57.037 32.000 0.00 0.00 37.82 2.43
196 205 6.090088 GTGCCGCATTTTATATTTGTCACAAA 59.910 34.615 5.18 5.18 0.00 2.83
305 321 4.332819 ACGAACTTTTGAGACTTGTGAAGG 59.667 41.667 0.00 0.00 0.00 3.46
389 408 9.319143 TGAAACAATTTTCAATGATAAAACCGT 57.681 25.926 0.00 0.00 46.59 4.83
605 650 6.538189 ACTTTGGTTTTCTTTGTTGTGTTG 57.462 33.333 0.00 0.00 0.00 3.33
720 789 2.266554 CTGAGCTTGATCGGTTCAGTC 58.733 52.381 17.70 0.00 37.30 3.51
721 790 1.674221 GCTGAGCTTGATCGGTTCAGT 60.674 52.381 22.82 0.00 41.73 3.41
722 791 1.005340 GCTGAGCTTGATCGGTTCAG 58.995 55.000 20.04 20.04 42.29 3.02
723 792 0.737367 CGCTGAGCTTGATCGGTTCA 60.737 55.000 1.78 5.31 0.00 3.18
724 793 0.458543 TCGCTGAGCTTGATCGGTTC 60.459 55.000 1.78 0.00 0.00 3.62
751 1359 0.037326 ATGCCTTCTTCGCTCGTTCA 60.037 50.000 0.00 0.00 0.00 3.18
752 1360 0.647925 GATGCCTTCTTCGCTCGTTC 59.352 55.000 0.00 0.00 0.00 3.95
753 1361 0.037326 TGATGCCTTCTTCGCTCGTT 60.037 50.000 0.00 0.00 0.00 3.85
755 1363 1.078709 TTTGATGCCTTCTTCGCTCG 58.921 50.000 0.00 0.00 0.00 5.03
756 1364 2.679837 TCATTTGATGCCTTCTTCGCTC 59.320 45.455 0.00 0.00 0.00 5.03
757 1365 2.715046 TCATTTGATGCCTTCTTCGCT 58.285 42.857 0.00 0.00 0.00 4.93
758 1366 3.492421 TTCATTTGATGCCTTCTTCGC 57.508 42.857 0.00 0.00 0.00 4.70
759 1367 4.797471 TGTTTCATTTGATGCCTTCTTCG 58.203 39.130 0.00 0.00 0.00 3.79
760 1368 5.406477 GGTTGTTTCATTTGATGCCTTCTTC 59.594 40.000 0.00 0.00 0.00 2.87
761 1369 5.163322 TGGTTGTTTCATTTGATGCCTTCTT 60.163 36.000 0.00 0.00 0.00 2.52
762 1370 4.344679 TGGTTGTTTCATTTGATGCCTTCT 59.655 37.500 0.00 0.00 0.00 2.85
812 1420 5.378230 TCCTAATAGGAGGAGTCGTGTAA 57.622 43.478 4.61 0.00 40.06 2.41
825 1433 5.914033 TGAGACAAACCGATTCCTAATAGG 58.086 41.667 0.00 0.00 39.31 2.57
826 1434 7.843490 TTTGAGACAAACCGATTCCTAATAG 57.157 36.000 0.00 0.00 0.00 1.73
856 1464 6.301486 GGGGTATACCGATTCCTAATTTGTT 58.699 40.000 15.80 0.00 41.60 2.83
859 1467 5.167921 AGGGGGTATACCGATTCCTAATTT 58.832 41.667 15.80 0.00 41.60 1.82
885 1505 4.447290 AGGGCGTGCTAAATTTTGTTTTT 58.553 34.783 0.00 0.00 0.00 1.94
890 1510 3.508744 ATGAGGGCGTGCTAAATTTTG 57.491 42.857 0.00 0.00 0.00 2.44
895 1515 4.882842 TCATATATGAGGGCGTGCTAAA 57.117 40.909 11.49 0.00 32.11 1.85
896 1516 6.731292 ATATCATATATGAGGGCGTGCTAA 57.269 37.500 19.73 0.00 40.64 3.09
897 1517 6.208797 GGTATATCATATATGAGGGCGTGCTA 59.791 42.308 19.73 6.28 40.64 3.49
904 1524 5.651303 TCGGGGGTATATCATATATGAGGG 58.349 45.833 19.73 3.02 40.64 4.30
906 1526 6.884836 TCGATCGGGGGTATATCATATATGAG 59.115 42.308 19.73 4.37 40.64 2.90
909 1529 6.433404 GTGTCGATCGGGGGTATATCATATAT 59.567 42.308 16.41 0.00 0.00 0.86
910 1530 5.766670 GTGTCGATCGGGGGTATATCATATA 59.233 44.000 16.41 0.00 0.00 0.86
911 1531 4.583489 GTGTCGATCGGGGGTATATCATAT 59.417 45.833 16.41 0.00 0.00 1.78
912 1532 3.949754 GTGTCGATCGGGGGTATATCATA 59.050 47.826 16.41 0.00 0.00 2.15
913 1533 2.758979 GTGTCGATCGGGGGTATATCAT 59.241 50.000 16.41 0.00 0.00 2.45
914 1534 2.165167 GTGTCGATCGGGGGTATATCA 58.835 52.381 16.41 0.00 0.00 2.15
915 1535 1.475682 GGTGTCGATCGGGGGTATATC 59.524 57.143 16.41 0.00 0.00 1.63
919 1539 0.185658 TATGGTGTCGATCGGGGGTA 59.814 55.000 16.41 0.00 0.00 3.69
936 1556 4.836736 TCGGAAGATAGGGGACGATTTTAT 59.163 41.667 0.00 0.00 33.31 1.40
946 1566 1.660917 GCTCGTCGGAAGATAGGGG 59.339 63.158 0.00 0.00 45.19 4.79
948 1568 1.370657 GCGCTCGTCGGAAGATAGG 60.371 63.158 0.00 0.00 45.19 2.57
1267 1898 3.003763 GAGGACGAGGCCCTTGGT 61.004 66.667 0.00 0.00 33.36 3.67
1696 2355 2.754658 AGCGGGGTTCTCGTCGAT 60.755 61.111 0.00 0.00 0.00 3.59
1735 2394 2.813908 CAGCTTACCGTCCCACGC 60.814 66.667 0.00 0.00 40.91 5.34
1962 2648 1.519455 GCACGTCCGGATCTTCCAG 60.519 63.158 7.81 0.00 35.91 3.86
2152 2844 4.508128 ATCGTCGTCGCCGCCAAT 62.508 61.111 0.00 0.00 36.96 3.16
2159 2851 1.201736 GGTAAACAACATCGTCGTCGC 60.202 52.381 0.00 0.00 36.96 5.19
2263 2955 2.484651 CGACTCTCTCGGAAGAAACTGA 59.515 50.000 0.00 0.00 41.32 3.41
2395 3090 5.392811 GCAGAAAATCTTCATCCTGTTCAGG 60.393 44.000 12.20 12.20 33.64 3.86
2502 3197 2.102394 CTTCATCGGCGCATCTGCTG 62.102 60.000 10.83 0.00 42.75 4.41
2540 3235 5.901413 TGAAAGATGATAATCCTGAGCCT 57.099 39.130 0.00 0.00 0.00 4.58
2603 3298 1.016627 AAATGGACGCATGGACATCG 58.983 50.000 0.00 0.00 0.00 3.84
2609 3304 1.267806 GATAGGCAAATGGACGCATGG 59.732 52.381 0.00 0.00 0.00 3.66
2668 3363 1.479730 TGTTCCACATGTTTTGCTGCA 59.520 42.857 0.00 0.00 0.00 4.41
2695 3390 2.781681 ACACCCATTGTAGTAGTGCC 57.218 50.000 0.00 0.00 36.32 5.01
2697 3392 4.562082 TCGAAACACCCATTGTAGTAGTG 58.438 43.478 0.00 0.00 37.51 2.74
2745 3446 3.432186 GGATGCTGGTAGTTGACATAGCA 60.432 47.826 0.00 0.00 46.95 3.49
2750 3451 1.003118 GGTGGATGCTGGTAGTTGACA 59.997 52.381 0.00 0.00 0.00 3.58
2783 3487 0.746659 GCAGAGGTTGTGGCAAGTTT 59.253 50.000 0.00 0.00 0.00 2.66
2806 3510 1.444836 CCCGTACGAGGCAAAATTGA 58.555 50.000 18.76 0.00 0.00 2.57
2827 3531 4.586841 AGCTTTGCCAATGTTGTTTACCTA 59.413 37.500 0.00 0.00 0.00 3.08
2835 3539 3.102052 ACAGAAGCTTTGCCAATGTTG 57.898 42.857 0.00 0.00 0.00 3.33
2855 3559 8.644374 AGTAATGCTTGGGTAAAATTAGACAA 57.356 30.769 0.00 0.00 0.00 3.18
2861 3565 6.207810 TCGTTGAGTAATGCTTGGGTAAAATT 59.792 34.615 0.00 0.00 0.00 1.82
2862 3566 5.708230 TCGTTGAGTAATGCTTGGGTAAAAT 59.292 36.000 0.00 0.00 0.00 1.82
2890 3597 5.306394 AGTACTCCAGCTACTTTTTGGTTC 58.694 41.667 0.00 0.00 33.65 3.62
2897 3604 7.771927 TTAGTGTTAGTACTCCAGCTACTTT 57.228 36.000 0.00 0.00 32.19 2.66
2898 3605 7.771927 TTTAGTGTTAGTACTCCAGCTACTT 57.228 36.000 0.00 0.00 32.19 2.24
2899 3606 7.957992 ATTTAGTGTTAGTACTCCAGCTACT 57.042 36.000 0.00 0.00 32.19 2.57
2902 3609 7.711339 GCAATATTTAGTGTTAGTACTCCAGCT 59.289 37.037 0.00 0.00 32.19 4.24
2903 3610 7.711339 AGCAATATTTAGTGTTAGTACTCCAGC 59.289 37.037 0.00 0.00 32.19 4.85
2904 3611 9.250624 GAGCAATATTTAGTGTTAGTACTCCAG 57.749 37.037 0.00 0.00 32.19 3.86
2905 3612 8.755028 TGAGCAATATTTAGTGTTAGTACTCCA 58.245 33.333 0.00 0.00 32.19 3.86
2906 3613 9.595823 TTGAGCAATATTTAGTGTTAGTACTCC 57.404 33.333 0.00 0.00 32.19 3.85
2910 3617 9.938280 ACACTTGAGCAATATTTAGTGTTAGTA 57.062 29.630 0.00 0.00 42.38 1.82
2911 3618 8.848474 ACACTTGAGCAATATTTAGTGTTAGT 57.152 30.769 0.00 0.00 42.38 2.24
2915 3622 6.490040 ACCAACACTTGAGCAATATTTAGTGT 59.510 34.615 0.00 0.00 45.71 3.55
2916 3623 6.913170 ACCAACACTTGAGCAATATTTAGTG 58.087 36.000 0.00 0.00 39.03 2.74
2917 3624 7.524717 AACCAACACTTGAGCAATATTTAGT 57.475 32.000 0.00 0.00 0.00 2.24
2918 3625 8.081633 TGAAACCAACACTTGAGCAATATTTAG 58.918 33.333 0.00 0.00 0.00 1.85
2919 3626 7.946207 TGAAACCAACACTTGAGCAATATTTA 58.054 30.769 0.00 0.00 0.00 1.40
2927 3634 3.306973 GCTTTTGAAACCAACACTTGAGC 59.693 43.478 0.00 0.00 0.00 4.26
2959 3666 7.617041 AGCAAATGAAACCATTAGTAGAGTC 57.383 36.000 0.00 0.00 33.43 3.36
2960 3667 7.575720 GCAAGCAAATGAAACCATTAGTAGAGT 60.576 37.037 0.00 0.00 33.43 3.24
2961 3668 6.749118 GCAAGCAAATGAAACCATTAGTAGAG 59.251 38.462 0.00 0.00 33.43 2.43
2962 3669 6.208402 TGCAAGCAAATGAAACCATTAGTAGA 59.792 34.615 0.00 0.00 33.43 2.59
2963 3670 6.389091 TGCAAGCAAATGAAACCATTAGTAG 58.611 36.000 0.00 0.00 33.43 2.57
2968 3679 3.404899 CCTGCAAGCAAATGAAACCATT 58.595 40.909 0.00 0.00 35.90 3.16
2978 3689 4.283403 GCGCACCCTGCAAGCAAA 62.283 61.111 0.30 0.00 45.36 3.68
3001 3712 0.907704 TATGGACTGGGCGTTCACCT 60.908 55.000 0.00 0.00 32.82 4.00
3017 3728 6.978659 CAGTATACAATACCGGGTAGCATATG 59.021 42.308 13.15 8.63 0.00 1.78
3019 3730 6.247676 TCAGTATACAATACCGGGTAGCATA 58.752 40.000 13.15 4.99 0.00 3.14
3031 3742 4.265904 CCACCGGCATCAGTATACAATA 57.734 45.455 0.00 0.00 0.00 1.90
3048 3759 2.189521 CCACCATAGTCGGCCACC 59.810 66.667 2.24 0.00 0.00 4.61
3095 3806 0.831307 GCACTAGGGAAATCGAGGGT 59.169 55.000 0.00 0.00 0.00 4.34
3110 3821 1.153524 TGGGAACTGCCATTGCACT 59.846 52.632 0.00 0.00 44.23 4.40
3145 3862 2.491022 GGGCAGATACGAGCGAGGT 61.491 63.158 0.00 0.00 0.00 3.85
3175 3920 2.457366 AGCCGGTGAAGACTTGTTAG 57.543 50.000 1.90 0.00 0.00 2.34
3183 3928 1.045407 ACAGTACAAGCCGGTGAAGA 58.955 50.000 1.90 0.00 0.00 2.87
3209 3954 4.566070 CCCTACCCAGGTATTTTTCGTTCA 60.566 45.833 0.00 0.00 40.79 3.18
3214 3959 5.362717 CCATTTCCCTACCCAGGTATTTTTC 59.637 44.000 0.00 0.00 40.79 2.29
3263 4008 5.909477 TCTTCTTTTTCACCGTCAGAGTTA 58.091 37.500 0.00 0.00 0.00 2.24
3281 4026 7.588497 AATGGCTAGAAACTGTTTTTCTTCT 57.412 32.000 7.28 2.27 39.30 2.85
3284 4029 8.011844 AGAAAATGGCTAGAAACTGTTTTTCT 57.988 30.769 7.28 6.29 41.25 2.52
3285 4030 8.542953 CAAGAAAATGGCTAGAAACTGTTTTTC 58.457 33.333 7.28 4.19 33.95 2.29
3287 4032 6.986231 CCAAGAAAATGGCTAGAAACTGTTTT 59.014 34.615 7.28 0.88 32.78 2.43
3288 4033 6.515832 CCAAGAAAATGGCTAGAAACTGTTT 58.484 36.000 5.29 5.29 32.78 2.83
3290 4035 5.712152 CCAAGAAAATGGCTAGAAACTGT 57.288 39.130 0.00 0.00 32.78 3.55
3311 4056 2.352715 GCAACCTTTACCATTCACTGCC 60.353 50.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.