>input_sequence_53855
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-------------------ATGGAGGGGTCCTCCTTCCCCGCCTCCTCCTTCCAGCCCCCGGCCATCGCTCGCGCCAGCG
CCCGGTACGCCCCCTGGGCTCTCCTCGACAGCAAGGCCTACTTCGCGGCCCTCGAGAACGACACCACCGGCGAGGCCACC
AC--------CAGCACCGGCCACGCCGTCAGGGTCACCTTCTGCCTGGCC---CCGCCGGCCATCTCCCACTTCTGCGTC
CACGGCCCCGGGCTCGACCGCGAGGACTTCACGATGGAGCCCCAGGTCCACTCCTCGACCAAGGGCCTCGTCCTCCTCCG
CTTCGCCTTCACCATCGGCCCCCGGGCCACCCACCGGCACTCCCGCCTCGCCGAGTACTACGTCTACAAGGCCGGCCGCG
GCAAGCCGCCGTCGCTCACGCCCATCCCGCGCACTCCTCCGGGCACCGTAAACTCGTCCTACATCTGCGTCCTGCCGCTT
GACGACGACGACT---------CCGGGGAGTTCCTCCTCGCCGAGCTCGGCATGACCAGGTCCAGCTCCGACTACGAGCT
CTACGTCTTCTCCTCCAAG-------ACCGGCGAGTGGACCATCAGGCAGTTGCGGCTGCAGACACC---------TCCC
GGGGTCAGGGACGAGGACCTGCCCGGCCCTCACATG---GACAAGGTGATCGCGCTCGGGGGAGGCGCCGTGGGCTGGGT
GGACCTCTGGCGCGGCATCGTCACCTGCAACGTGATCGACGAGAACCCCGCTCTGACTCTCATCCCCATACCCGC-----
-----------GTGGGACGGTAAGCTGCG--GCGGCTGGCCCGGGACATCACCTGCTGCAGCAATGGTTTCATCAAGCTT
GTCGACCTGGACCTCCGTTTCAAAAAGACCATTGTTGATCCTAACCACAAGACTCGCAAGGTGACCGAGGATCTCGACAG
CGTAGACATCATCTACGATTCAGACCTGCT---CCTCTACGACGACGATGCATGCGCCGAACACA------CTTTTGTGA
GTGATGGCTGGAAGATCCGGACGTGCTACAGGCATACTTCCTGGGACTA---CTGGCGCAAGGGGCACGCCGTCGACATC
GATGAAATCTCGGTCGACAACCCCGATCACTTTACGTTGCTCCCACAGCTGTGGGACGCTGAAGC---TGGGAGACCGAC
ACTGAGGAACTTGCTTTCCGCTTTCCCTACCCTCGGCATTGGCATTGGCGGCGACGACGATGTTGTTTACCTGATGTCTA
AGGTGACATATGATGATAAGAACGCGTGGATGGTCGGTGTTAATCTTGGAAAGAAGACACTGGATGTGGTTGTGTCAGTT
TCTTCCGAGAGAGTCGGTTATTACGAACCGGACT---TCCTCGCTTGTGGATTCTCCGAATATCTGAATGCGACGCCAAG
GTAA----------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G280000
GTCAACTTTAAGATAGTTTGACCCTCCAACAAAGTTGGAATTACACTCTTTTAAGGACGGAGGGAGTAGATAAGGAAGCC
AATGCAAATCCACACAC--CGGTATATGTTTATGTTGTATACAAAAAATGTATAAATGTGAATGTATAAATTAGATAT--
----TCATGTGTAGTAAAAATGTTAATCATCTCTACGAAAAATGTTTGTGACAAATATAAAATGCGGCACATTTGAAAAG
AAATGTACATGAAAAAATGTTCGTATAATTCAATAAAAATGTTTCAA-------AATATATATACATTACATTTAAAAAA
CCTTCACAAGTC-TCAAAAGTTCGTGACATTTTCAAAAAAAATGTGTGTATAATTTTTTAAAAAA--TTACATAGGTAAA
AAAATAGACGGTTTTATCATTGAAAATTGTTTCAACATGTAT--AGAAATTGTTTGACAC-ATATTTGAAAAATATATTC
AAAACATGTTTGTGTAAAAGAATATGTATTTAAAAAATATTAAACATGTATGA-AAATT-------------------AA
TATAAAATATTTATTAAAAAAGTAGACGTGTGTTTAAAA--AAGCAAAAAAGAAACAAAAAGAAAA-TGAAGATACCAAA
ACAATCCAACAACACAACAAAGAAAACCAAAGTATAAAGAAGAAAA-----------CCGTTAAAAACAAGTAAAAAATC
GAAAGCATAACGAAAAAAAAGGGAGCCAA-------------AAAAAACATAAAACGAAAAAAAAACGGACTGA------
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-----------------------------------------------------ACCGATCAAGCTCAGCGACCCGACGTG
AACGAGCGAAGAAGGCATCAAATGAAACAACCAGTGGGCCGGCCCGTAGTCGTCCGCCCTTACACGACTCCTCCTATTAG
GAATCGGTTTGTCTCAAAAAAAAAACA--AATTAGGAATCGGTATAC----------CCCCTCAAAAAACAAAATTTAGC
ACGCCCTCATATATGATATACCCCCGATCGACACCATAAAATCGTCCCCTATCTTCCGACGAGCGCCTGCCGCTCCTCCG
ACTACTAGCAACCATGGAGATGGAGGGGTCCTCCTTCCCCGCCTCCTCCTTCCAGCCCCCGGCCATCGCTCGCGCCAGCG
CCCGGTACGCCCCCTGGGCTCTCCTCGACAGCAAGGCCTACTTCGCGGCCCTCGAGAACGACACCACCGGCGAGGCCACC
AC--------CAGCACCGGCCACGCCGTCAGGGTCACCTTCTGCCTGGCC---CCGCCGGCCATCTCCCACTTCTGCGTC
CACGGCCCCGGGCTCGACCGCGAGGACTTCACGATGGAGCCCCAGGTCCACTCCTCGACCAAGGGCCTCGTCCTCCTCCG
CTTCGCCTTCACCATCGGCCCCCGGGCCACCCACCGGCACTCCCGCCTCGCCGAGTACTACGTCTACAAGGCCGGCCGCG
GCAAGCCGCCGTCGCTCACGCCCATCCCGCGCACTCCTCCGGGCACCGTAAACTCGTCCTACATCTGCGTCCTGCCGCTT
GACGACGACGACT---------CCGGGGAGTTCCTCCTCGCCGAGCTCGGCATGACCAGGTCCAGCTCCGACTACGAGCT
CTACGTCTTCTCCTCCAAG-------ACCGGCGAGTGGACCATCAGGCAGTTGCGGCTGCAGACACC---------TCCC
GGGGTCAGGGACGAGGACCTGCCCGGCCCTCACATG---GACAAGGTGATCGCGCTCGGGGGAGGCGCCGTGGGCTGGGT
GGACCTCTGGCGCGGCATCGTCACCTGCAACGTGATCGACGAGAACCCCGCTCTGACTCTCATCCCCATACCCGC-----
-----------GTGGGACGGTAAGCTGCG--GCGGCTGGCCCGGGACATCACCTGCTGCAGCAATGGTTTCATCAAGCTT
GTCGACCTGGACCTCCGTTTCAAAAAGACCATTGTTGATCCTAACCACAAGACTCGCAAGGTGACCGAGGATCTCGACAG
CGTAGACATCATCTACGATTCAGACCTGCT---CCTCTACGACGACGATGCATGCGCCGAACACA------CTTTTGTGA
GTGATGGCTGGAAGATCCGGACGTGCTACAGGCATACTTCCTGGGACTA---CTGGCGCAAGGGGCACGCCGTCGACATC
GATGAAATCTCGGTCGACAACCCCGATCACTTTACGTTGCTCCCACAGCTGTGGGACGCTGAAGC---TGGGAGACCGAC
ACTGAGGAACTTGCTTTCCGCTTTCCCTACCCTCGGCATTGGCATTGGCGGCGACGACGATGTTGTTTACCTGATGTCTA
AGGTGACATATGATGATAAGAACGCGTGGATGGTCGGTGTTAATCTTGGAAAGAAGACACTGGATGTGGTTGTGTCAGTT
TCTTCCGAGAGAGTCGGTTATTACGAACCGGACT---TCCTCGCTTGTGGATTCTCCGAATATCTGAATGCGACGCCAAG
GTAAATTTATTTCCTTTGATCATGTTTGCCTAGATCTGTTCGGTGAACCCCTGAACAGGATGAAGATTTTCTGCTAAAAA
TAGTTGTGTAATTTCTGAGTTCACCACTAGTTATTCTACCCGATGACATCTCACATCTAGTTGTTGTTATTTGCTTCAGC
AGATGCGCCGATGAAGTTGCCAGCGCACCGAATCAGGCTCAGGATTATCATCTTTCATCAGACAATGTGGTATGCTATGA
TCATCTCAATTTTTGATCGATGTCCATGCGTCCATTTGCCTATCTACATGCAGAAATTTTATAACTGTACGTTTACAGCC
ACTGCAGCAAAACATGTGGAACAACAATGGGCACTACTACAATGGGTGTTTCG------ATGGTTATGGCACACAGCCAA
GCAACTGCTAT---GTCAACTACCAGCATCCACCTGCATGCTCGGCAAACTTGCCACAACCTCTGCATCTCAATTTTGCC
TCGTACGGGCTAGGTAAACAACATTGGCAAAGCTTCTGTTGTCTAA--TTTTA-CCCAAGCATTACTCAACGAGTTGAAC
CAAAAAGTAGCTGGAGTACTAACACTAAATATTGCTCAAGTGTTGGTTTCAAAAGCTTGTCTTGTGACTC----TACTAA
TGGTTTCATTTGCTTGCAGGGTGCGCCTATCAGGTGAACGCCCAGTCCATATGCTACCCGGTATTGTATACTGATGCCGG
TGGCCGACTATGGTGGGTCGCTCTGCCGCTGGGGTCGGCGCCGCCACCCTCGATTTCCCTA------GTGCAATGGCAGT
TCCCACCCAACCCGGGCCAACA----------------------------CCTCGCTCGTATCTGCCCTAGCTCTGCTTC
TAACAAGTCTTCACCGGCTTGTACTGTGAAAGGTGAACGAAAAATACCTGGGTAGGGAAATGGGGAAGTGAAACTGAATT
GGAGAGTTAACTCTGACGGTGAAAAAGAAGAAAAACAGTTTCTAGCCATTTTCTTGGCAGTGAATGGTAAAGGTTGCTAG
CCCCACGTTTTATG
>chr4A_66
-----------------------------------------------------------------GTAGAGAAGGAAGCC
AATGCAAATCCCACACAGTCGGTATATGTTTATATTGTATACAAAAAATGTATAAATGTGAATGTAGAAATTAGAAAATG
TTAGTCATGTATAATGAAAATAGTAATCATTTGTACGAAAAATGATTGTGACAATTATAAAATGCGGCACATTTCAAAAT
GAATGTACATGAAAAAATGTTTGTCTAATTCAATAAAAATTATTCAGAAATTTTAAAAAATATATGTTACATTTAAAAAA
TCTTCACAAGTTTTCAAAAGTTCATGGCATTTT---AAAAAATGTGTGTAAAATTTAAAAATAATGTTTGCATAGGTCAA
AAAATAATGGTTTTTATCATT-AAAATTGTTTCAACATATGTTTGGAAAAGTTTTTAACATATATTTAAAAAATATATTC
AAACCATGTTTGTGTAAAA-AACATGTATTTAAAAAAAGTTAAACGTGTATAT-AAATAGTTTAAATGTATAGAAAAAAA
TATATAATATTTATGAAAAA-GTAGATGTGTTGAAAAAA--TAAAAATAAAAAGACAAAAAGAAAAGAGTAGATACCAAA
AAAGTCCAAAAACAAAACAAAGGAAACCAAAGTATAAATAAGAAAAACT-AAGAGAACCGTTGAAAAG----AAAAAATC
GAAAGCAGAACGATGAAATAAAGAATAAAGTAAAAAGGGGG----AAACAGAAAATGAAAAAAA--GGACTGAACCGACG
AATCACTAATTAAGGACTCACTCCAATCCCCCTAATTGGGACAAGTGGCGCACATGCAATGCGCCACTTGTCGCAACCTG
TGAGTTTTTCCTTTTTTCGTAGATCCATTTATTCAAAATGTTTTATCTCTCAAACCGTGCGTCCAAATCTTGAACTGCTT
TCATCGTTGGATTCCTTGCATCGAGATCTCCAAAACTAGATTCCATGTTGATAGGTTTTAACGAACTTTTTTTTCACAAA
AAAAACTGGACGAAAAAACCAAACCAGGAGAACGGGTTTTTTCCCTTTTCAAAAGAGACACGCCCGTGCCTCTCACGAAA
TCACAACTGTGTCTCTCGCAGAAACAAAACCGTGACTCTCGCGGAAGAAAAAAAGAACACGTTTTTTTCGTTTCCGAGAA
GGCAGGGCCGTGACTCTCGTAAAAGCACAATCATGACTCTTGCAAAAATAAAACTGTGACTCTTACAAAAAGAAAAAAAA
TTATGTTTTTTTCATTTTTCAAAAAACACGGTTGTGACTCTCACGAAAGCATGACCGATCAAACGCAGCGACCCCGATGC
CAACGAGC--GAAGGCATCAAATGAAACAACCAGTGGGCCGGCCTGTTGTCGTCCGCCCGTATACGATTCCA---ATTAG
GAATC---TTGTCTCAAAAAAAAGGCTACAATTAGAAATCGGTA------------------------------------
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>chr4B_278
AAAAA---------------------------------------------------------------------------
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----------------------------------------------------------TATGTACATTACATTAAAAAAA
TTCTCATAAGTC-TCAAAGGTTCGTGACATTTTCAAAAACAATGTTTGTACAATTTAAAAAAAAT-----CAAAGGTCAA
AAAAAGGGGGGT-------TT-ATCATTGTTTCAACATGTATTTAGAAATTGTTTGACAC-GTACTTGAAAAATATATTC
AAAGCATGCTTGTGTAAAAGAATATGTATTTAAAAAATGTTAAACATATATGAAAAATAGTTTACATGTATAC-AAACAA
TATACAATATTTATTAAAAA-GTAGACGTGAGTTTAAAAACAAGCAAAAAAGAAACAAAAAGAAAAGTGAAGATACCAAA
ACAATCCAAAAACAAAACAAAGAAAACCAAAGTATAAAGAAGAAAAACCGAAGAAAACCATTAAAAACAAAT-AAAAATC
GAAAGCATACCGACAAAAAAAAGATAAACCAAAAAAAGAGCGAAAAAACAGAAAACGAAAGAAAACGGACTGAACCGATA
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------------------------------------------------------------AAGCTCAGCAACCCGACG--
----------------------TGAAACAACCAGTGGGCCGGTCCGTAGTCGTCCGCCCGTACACGACTCCTATTGGGTC
GTCTCAAAA------AAAAAAAAGACTCCTATTAGGAATTGGTATATACTTCTACTTCCCTTTTCAAAAGAAAAAACAGC
ACGTCGTC-------ATACACCCCCGATCGACACCGTAAAATCGTTCGCTATCTTCCGACGAGCGCCTGCCGCTCCTCCG
ACTACTAGCAACC------ATGGAGGGGTCCTCCTTCCCCGCCTCATCCTTCCAGCCCCCCGCCATCGCCCGCGCAAGCT
CCCGGTACGCCCCCTGGGCCCTCCTCGACAGCAAGGCCTACTTCGCGGCCCTCGAGAACGACACCACCGTCGAGGCCACC
ACCAGCACGGCAGCACCGGCCACGCCATCAGGGTCACCTTCTGCCTGGCCGACCCGCCGGCCATCTCCCACTTCTGCGTC
CACGGCCCCGGGCTCGATCGCGAGGACTTCACGATGGAGCCCCAGGTCCACTCCTCGGCCAAGGGCCTCGTCCTCCTCCG
CTTCGCCTTCACCATCGGCCCCCGGGCCACCCACCGGCACAACCGCCTCGCCGAGTACTACGTCTACAAGGCCGGCCGCG
GCAAGCCGCCGTCGCTCACGCCGATCCCGCGCACTCCTCCGGGCACCGTAAACTCGTCCTACATCTGCGTCCTGCCGCTT
GACGACGACGACGACGACGACGCCGGGAAATTCCTACTCGCCGAGCTCGGCATGACCAGGTCCAACTCCGACTACGAGCT
CTACGTCTTCTCCTCCAAG-------ACCGGCGAGTGGACCATCAGGCAGTTGCGGCTGCAGACACC---------TCCC
GAGGTCAGGAACGAGGACCTGCCCGGCCCTCACATG---GACAAGGCGATCGCGCTCGGGGGAGGCGCCGTGGGCTGGGT
GGACCTCTGGCGCGGCATCGTCACCTGCAACGTGCTCGACGACAACCCCGTTCTGACTCTCATCCCCATACCCAC-----
-----------GTGGGACGGTAAGCTGCG--GCGGCTGGCCCGGGACATCACCTGCTGCAGCAATGGCTTCATCAAGCTT
GTCGACCTGGACCTCCGTTTCAAAAAGATCGTCGCTGACCATAACCACAAGACTCGCAAGGTGGCCGAGGATCTCGACAG
CGTAGACATCATCTACGATTCAGACCTGCT---CCTCTACGACGACGATGCATGCGCCGAACACA------CTTTTGTGA
ATGATGGTTGGAAGATCCGGACGTGCTACAGGCATACTTCCTGGGACTA---CTGGCGCAAGGGGCACACCGTCGACATC
GATGAAATCTCGGTCGACAACCCTGATCACTTTACGTCGCTCCCACAGCTGTGGGACGCTGAAGCTGCTGGGAGACCGGC
ACTGAGGAACTTGCTTTCCGCTTTCCCTACCCTCGGCATTGGC---GGCGACGACGACGACGTTGTTTACCTGATGTCTA
AGGTGACATATGATGATAAGAACGCGTGGATGGTCGGTGTTAATCTTGGAAAGAAGACACTGGATGTGGCTGTGCCAGTT
TCTTCCGAGAGAGTCGGTTATTACGAACCGGACT---TCCTCGCTTGTGGATTCTCCGAATATCTGAACGCGACTCCAAG
GTAAATTTATTTTCTTTGATCATCTTTGCCTGAAGCTGTTCGGTGAGCCTCTGAACAGCATGAACATTTTCTGCT-AAAA
TAGTTGTGTAATTTCTGAGTTCACCACTAGTTATTCTACCCGATGACATCTCACATCTTGC--TTGTTATTTGCT-----
--------------------------------------TCAGGGTTATTATCTCTCATCAGACAATGTGGTATGCTATGA
TCATCTCACTTTTTGATTGATGTGCATGCGTCCATTTGCCCATCTACATGCAGAAATTTCAGAACTGTACATTTACAGCC
ACCGCAGCAGAACATGTGGAACAACAATGTGTACTACTACAATGGGTGTTTCTATGGATATGGTTATGGCGCACAGCCAA
GCAACAGCTACTACGTCAACTACCGGCATCCACCTGCGTGCTTGGCTAACTTGCCACAGCCTCTGCTTCCCGGTTTTGCC
TCGTACGGGCCAGGTAAATAGCATTGGCAAAGCTTCTGCTGTCTTC--TTTTACCCCAAGCATTACTCAACGAGTTAAAC
CAA-----------------------AAATATTTCTCAAGTGTTGGTTTCAAAAGCTTGTCTTGTAGTAACTCTTACTGA
TGGTTTCACTTGCTTGCAGGGTGCGCCTATCCGGTGAACGCCCAGTCGACATGCTACCCGGGATTGTACACTGATGCCTG
TGGCCGACTATGGTGTGTCGCTCTGCCGCTGGGGTCGGCGCCGCCCCCCTCGATTTCCCTTTCCCTGGTGCAATGGCAGT
TGCCACCCAACCCGGGCCAACTCCACCACCCTGCCCTTTGCCAACCTCCCCCTCGCTCGTATCTGCCCTAGCTCTGCTTG
TAACAAGCCTTCACCGGCTTGTACTGTGAAAGGCGAACAAAAAATACCTGGGTAGGGAAATGGGGAAGTGAAACTGAGAT
GGAGAGTGAACTCTGACGGTGAAAAGGAGAACCAGC---TTCTAGCCATTTTCTTTGCAGTGAATGGTAAAGGTTGCTAG
CCCCA---------
>chr4A_954
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----------------------------------------------------CTTCCGACGAGCGCCTGCCCCTCCTCCG
ACTACTAGCAACCATGGAGGTGGAGGGCTCCTCCTTCCCCGCCTCCTCCTTCCAGCCCCTCGCCATCGCCCGCGCCTGCG
CCCGGTACGCCCCCTGGGCCCTCCTCGACAGCAAGGCCTACTTCGCGGCCCTCGAGAACGACACCACCGCCGAGGCCACC
AC--------CAGCAGCGGCCACGCCGTCAGGGTCACCTTCTGCCTGGCCGACCCGCCGGCCATCTCCCACTTCTGCGTC
CACGGCCCCGGGCTCGACCGCGAGGACTTCACGATGGAGCCCCAGGTCCACTCCTCGGCCAAGGGCCTAGTCCTCCTCCG
CTTCGCCTTCACCATCGGCCCACGGGCCATCCACCGACACAACCGCCTCGCTGAGTACTACGTCTACAAGGCCGGCCGCG
GCAAGCCGCCGTCGCTCACGCCCATCCCGCGCACTCCTCCGGGCACCGTAAACTCGTCCTACATCTGCGTCCTGCCGCTT
GACGACGACGAGGAGGACG---CCGGGGAGTTCCTCCTCGCGGAGCTCGGCATGACCAGGTCCAACTCCGACTACGAGCT
CTACGTCTTCTCCTCCAAG-------ACCGGCGAGTGGACCATCAGGCAGCTGCGGCTGCAGACACC---------TCCC
GGGGTCAGGAACGAGGACCTGCCCGGCCCTCACATG---GACAAGGCGATCGCGCTCGGGGGAGGCGCCGTGGGCTGGGT
GGACCTCTGGCGCGGCATCGTCACCTGCAACGTGCTCGACGACAACCCCGTTCTGACTCTCATCCCCATACCCAC-----
-----------GTGGGACGGTATGCTGCG--GCGGCTGGCCCGGGACATCACCTGTTGCAGCAATGGTTTCATCAAGCTT
GTCGACCTGGACCTCCGTTTCAAAAAGACGGTTGTTGATGCTAACCACAAGACTCGCAAGGTGGCCGAGGATCTCGACAG
CGTAGACATCATCTACGATTCGGACCTGCT---CCTCTACGACGACGATGCATGCCGTCG--------------------
------------------------------------------------------------------ACATCGTCGACATC
GATGAAATCTCGGTCGACAACCCCGATCACTTTACGTTGCTCCCACAGTTGTGGGACGCTGAAGC---TGGGAGACCGAC
ACTGAGGAACTTGCATTCCGCTTTCCCTACCCTCGGCATTGGC---GGCGACGACA---ATGTTGTTTACCTAATGTCTA
AGGTGACATATGATGATAAGAACGCGTGGATGGTCGGTGTTGATCTTGGAAAGAAGACACTGGATGTGGTTGTGCCAGTT
TCTTCCGAGAGAG-------------ACCGGACT---TCCTCGCTTGTGGATTCTCCGAATATCTGAATGCGACGCCAAG
GTACATTTGTTTCCTTTGATCATGTTTGCCTAGAGCTGTTCGGTGAACCTCTGAACAGGATGAAGATTTTCTGTT-AAAA
TAGTTGTGTAGTTTCTGAGTTCATCACCAGTTGTTCTACCTGATGACATCTCACATCTAGTTGTTGTTATTTGCTTAAGC
AGATGCGCCGATGAAGTTGCCAGCGCACCGAATCGGGCTCAGGATTATCATCTTTCAACAGACAATCTGGTATGCGTTAA
TCATCTCAATTTTTGATTGATGTGCGTGCGTCCATTTGCACATCTACATGCAGAAATTTTATAACTGTACGTTTACAGCC
ACCGCAGCAAAACATGTGGAACAACAATGAGTACTGCTACAATGGGTGCTTCTATGGATATGGTTATGGCACACAGCCAA
GCAATAG---CTACGTCAACTACCAGCATCCACCTGCATGCTCGGCTAACTTGCCACAACCTCTGCATCCCAATTTTGCC
TCGTACGGATCAGGTAAATAACATCCGCAGAGCTTAGGCTTTTGTTGTTTTTA-CCCCAGCATTA---------------
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>chr3D_1008
GGTCT---------------------------------------------------------------------------
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--------------------------------CCTTCCCGGCATCCTCCTTCCGGCCCCCCGCCATCGACCGCGCCAGCG
CCCGCTACGCGCCCTGGGCTCTCGTCGACAGGGATGCCTACTTCGCCGCCCACGAGAACGACACCACCGCCGAGGCTGTC
AC--------CAGCACCGGCCACGCCGTCAGGGTCACCTTCTGCCTCGCCGACCCGCCGGCCATCTCCCACTTCTGCGTC
CACGGCCCCGCGTTTGACCGCGACGACTTCACCATGGAGCCCCAGGTCCACTCCTCGGCCAAGGGCCTCGTCCTCCTCCG
TTTCGCCTTCACCGTCGGCCCCCGGAGCACCCATCGGGGCTCCCGCCTCGCCGAGTACTACGTCTACAAGGCCGGCCGCG
GCAAGCCTCCGTCGCTCACGCCGATCCCGCCCACTCCTCCGGGGGCCACAAACTCGTTCCACACCTGCGTCCTGCCGCTC
GATGACGAC------GACG---ACGGGGAGTTCTTCCTCGCCGAGCTCAGCATGACGAAGTCCCGCTCCGACTACGGGTT
ACACGTCTTCTCCTCCAAG-------GCCGGCGAGTGGACTGTCAGACAGTTGCGTCTGCAGACACC---------TCCC
GGGGTCAGGAAGCGGGACCTGCCCGGCCCTAACGACCTTGACAAGGTGATCACGCTCGGCGGAGGCGCCGTAGGCTGGGT
CGACCTCTGGCGCGGCATTGTCACCTGCAACGTGCTTGACGAGAGCCCCATCCTAACCTTCATCCCCATACCCATGCTTG
AAGGCAACGTGGACCGGGAAGGTAACTCC---CGGCTGTTCCGGGACATCACCTGCTGCGACAATGGTTTCATCAAGTTC
GTTGAGCTGGATCTCCGTTTCAAAAAGGTCCCTGATCATCATAATTACAAGACTCGCAAGACGACCAAGGATCTTGACAG
CGTAGAAATCATGTATGATTCGGACCTGCTATTGTATTACGATTACCCTCTG------GAACATA------CTCTTGCCG
ATGATGGTTGGAAGCTCCGGACGTGTTACAGGCATACTTCCTGGAACTA---CTGGCGCAAGGGGCACGCCGTCGATATC
GACGAGATCTCGGCCGACAACCCTGAGCATTTTATGTTGCTCCCACAGCTATGGGATGCTCGAGC---CGGGAGGTCGAC
GCTGAGGAACACGTATTCGGCTTTCCCGACCCTAGGCGTTGGC---GGC------AGCGATGTTGTTTACCTCATGTCTA
AGCTGGGATATCATGCCAAGAACGCGTGGATGATCGGCGTCGACCTTGGAGAAAAGAGGGTGGATGTGGTTGTACCAGTT
TCTTCTGAGAGAGTCGGTTATTTCAAGCCGGAGT---TTCTCGTATGTGAATTCTCCGAATATCTGAATGCGACTCCAAG
GTAAA-TAAATTTCTTTGATCATGGTTGCACAAGTCAGTTCGGT------------------------------------
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>chr4D_1015
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---------------------------------CTTCCTCGCCTGCTCCTTCCAGCCACCCGTTGTCACTCGTGCCAGCG
CCCGCTAGGCCCCCCGGGTTCTCCTCGACAAGAAGGCCTACTTCGCCGTCCGCGAGAACGCCACAACCGTCGAAGCCGTT
AC--------CAGCACCGGCAACGCCTTCAAGGTCACCTTCTGCCTGGCCGACCCGCCGGCCATCTCCCACTTCTGCGTC
CACGGCCCCGAGTTCCAGCGCGACGACTTAGCGACTGAGCCCCTGGTCGTCTCCTCGGTCAAGGACTTCGTGCTCCTCTG
TTTCA------------GTTCCCGGAGAAGCGGTCCGGGATCTCGCCTCCTGGAGTACTTCGTCTACAAGGCCAACCACG
GCAAGCCG---TCACTCACACTGATCCCACGTGCTCCTCCGGGCACCACAAACTTGTTCCATGTGTGCGTCTTGCCAATC
GACGATGAT------G------TTGGGGGATTTGTCCTGGCAGATCTCTCCATGACAGTGCCCCCATCAGACTACGAGCT
CCACGTCTTCTCTTTCAGG-------ACAGGCAAGTGGGCCACTACGACGTTGCGGTTGCAAACACATAGCGCATATCCC
GGGGTGAGGAAAGAAGACCTGCCGGGCCATATT---TTTGACAAGGCGGTCGCGCTAGGAGGAGGTGCTGTCGGCTGGAT
CGACCTCTGGCTTGGCATTGTCACCTGCAATGTCTTTGACAAGAACCCGGCTCTAAGTTTCATCCCGATACCC-------
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>chr4A_1015
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---------------------------------CTTCCTCGCCTCCTCCTTCCAGCCACCCGTTGTCACTCGCGCCAGCG
CCCGCTATGCCCCCTGGGTTCTCCTCGACAAGAAGGCCTACTTCGCCGTCCGCGAGAACGCCACCACCGCCGAAGCCGTT
AC--------CAGCACCGGCAACGCCTTCAAGCTCACCTTCTGCCTGGCCGACCCGCCGGCCATCTCCCACTTCTGCGTC
CACGGCCCCGAGTTCCAGCGCGACGACTTAGCGACCGAGCCCCTGGTCGTCTCCTCGGTCAAGGACTTCGTGCTCCTCTG
CTTCA------------GTTCCCGGAGAAGCGGTCGGGGATCTTTCCTCCTGGAGTACTTCGTCTACAAGGCCAACTACG
GCAAGCCG---TCGCTCACACTAATCCCACGTACTCCTTCGGGCACCACAAACTTGTTCCACGTGTGCGTCTTGCCAATC
GACGATGAT------G------AAGGGGGATTTGTCGTGGCAGATCTCTCCATGACAGTGCCCCCATCAGGCTACGAGCT
CCACGTTTTCTCTTCCAGG-------ACAGGCAAGTGGGCCACTACGACGTTGCGGTTGCAAA---------CATATCCC
GGGGTGAGGAAAGAAAACCTGCCGGGCCATATT---TTTGACAAGGCGGTCGCGCTCGGAGGAGGTGCTGTCGGCTGGAT
CGACCTCTGGCTTGGCATTGTCACCTGCAATGTCTTTGACAAGAACCCGGTTCTAAGTTTCATCCCGATACCC-------
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>chr4A_1015
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---------------------------------CTTCCTCGCCCCTTCCTTCCAGCCCCCCGTCGTCACTCGTGCCAGCG
CCCGCTACGCCCCCTGGGCTCTCCTCGACAAGAGGGCCTACTTCGCCGTCCGCGAGAACGCCACCACCGCCGAAGCCGTC
AC--------CAGCACAGGCAACGCATTCAAAGTCACCTTCTGCCTCGCCGACCCGCCGGCCATCTCCCACTTCTGCGTC
CACGGCCCCGATTTCCAGCGCGACGACTTAACGACCGAGCCCCGGGTAGTCTTCTCGGCCAAGGACCTCGTGCTCCTCTG
CTTCA------------GTCCCGGGAGAAACCGTCGGGGATCTTGCCTCGACGAGTACTTCGTCTACAAGGCCGACTACG
GCAAGCCG---TCGCTCACACCGATCCCGCT---------GGGCACCAGAAACTCGTTCCACGTGTGCATCTTGCCCCTG
GACGACGAT------G------ACGGGGGATTTGTTCTCGCAGATCTCTGCATGACAAACCTCCCACCAGACTACGATCT
TCATGTCTTCTCTTCAAAG-------ACAGGCAAGTGGGCAATTACACCGTTACGGTTGCAACCATAC---------CCT
GGGGTGAGGAAAGAGAACCTGCCGGGCCCTTTT---CTCAACAAGGTGGTCGCGCTTGGAGGAGGTGCTGTCGGCTGGAT
CGACCTCTGGAGTGGCATTCTCACCTGCAATGTGTTTGACAAGAACCCTGTTCTAAGTTTCATCCCGATACCC-------
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>chr4D_1017
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-----------------------------------TCCCCGCCTCCTCCTTCCAGCCCCCCGCCGTGATTCGCGCCGGCG
CCCGCTACGCCCCCTGGGTTCTCCTCGACAGAAAGGCCTACTTGGCCGTCCGCGACAACGCCACCACCGCCGAAGCCCTC
AC--------CAGCACAGGCCGCACCGTCAAGATCACCTTCTGCCTCGCCGACCCGCCCGCCATCTCCCACTTCTGCGTC
CACGGCCCCGAGTTCCGGCGCGGTGACTTCGCGAGCGAGCCCCTGGTCGTCTTCTCGGCCAAGGATCTTGTGCTCCTCCG
CTTCGCCTTCACTGTCG---------------------------GCCGCCTCGAGTACTTCGTCTACAAGGCCGGCCGCG
GCAAGCCGCCCTCGCTCACGCGGATTCCTCGTACTCCTCCTGGCACCGCCAACTCGTTACACAAGTGCGTCTTGCCGTTC
GACGACGAC------G------ATGGGGGATTCCTCATGGCCGATCTCTTCATGACGAAGCTCCGCTCAGACTACCAGCT
CCAAGTCTTCTCTTCCAAG-------ACGGGCAAGTGGACCATCACGCCGTTGCGGTTGCAAACATC---------TCCC
GGGGTCAGGGAAGAGGACCTGCCCGGCCCTCGT---CTCGACAAGGCGATCGCGCTGGGAGGAGGTGCCGTAGGCTGGGT
CGACCTCTGGCGCGGCATTCTCACCTGCAACGTGTTTGACAAGAACCCCGTTCTAAATTTAATCCCGATACCCAAGCTTG
CATACTCTAATGAGGAACGGAGAGCTGCCCCGCGGCTGGTCCGGGATATCACCTGCTGCA---ATGGTCGCATCAAGTTT
GTCGAGCAGGAACTTCGGTTCAAAGTGTCTATTATTCCTAGAAAGACTCTGGAG------------GATAATGTTGATAG
CTTCGACATCATCTTTGATCCTCGGCCGCTCTCCCACAAGGAGGATGATGACCGTGCCAAACTCGTGCTAGCTGCTGTCT
GTCTTGGTTGGAAGCTCCGAACATGTGATAGGCATACCACCAGGAACGACGATTGGCACAAGGGGCACACAGTTGATATG
GATGCCATCTCGGTCGACAACCCTGACCATGCTAGGTTGCTCCCACAGCTCTGGGATGCCCAGGC---CGGGAAATCAAC
TCTGTGGGATCTGTCTTCAACTTACCCCACCCTAGGCATT---------GACGATGACGACATTGTTTACATGATGACTA
AGGTAAAGTTTCATGATAACAAGGCATGGATGATCGGTGTCGACCTTGCAAAAAGGGCGGTGGAAGTGCTCATACCAGTT
TCTTCAGAGAGAGTCGGTAATTTCAAACCGGACATGATCCTCGCCTGTGAATTCTCCGAATATCTGAATGCAACTGCAAG
GTACATTTCTTTGGTTATTATA--TTTGCATATAGTATTTCCGTGAACC-------------------------------
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>chr4B_1017
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-----------------------------------TCCCCGCCTCCTCCTTCCAGCCTCCCGCCGTGATTCGCGCCGGCG
CCCGCTACGCCCCCTGGGTTCTCCTCGACAGAAAGGCCTACTTGGCCATCCGCGAGAACGCCACCACCGCCGAAGCCCTC
AC--------CAGCACAGGCCGCACCGTCAAGGTCACCTTTTGCCTCGCCGACCCGCCCGCCATCTCCCACTTCTGCGTC
CACGGCCCCGATTTCCGGCGCGGCGACTTCGCGAGCGAGCCCCTGGTCGTCTTCTCGGCCAAGGATCTTGTGCTCCTCCG
CTTCGCCTTCACTGTCG---------------------------GCCGCCTCGAGTACTTCGTCTACAAGGCCGGCCGCG
GCAAGCCGCCGTCGCTCACGCGGATTCCTGGTACTCCTGCTGGCACCGCCAACTCGTTACACAAGTGCGTCTTGCCGTTC
GACGACGA---------------AGGGGGATTCCTCATCGCCGATCTCTTCATGACGAAGCTCCGTTCAGACTACCAGCT
CCAAGTCTTCTCTTCCAAG-------ACGGGCAAGTGGACCATCACGGCATTGCGGTTGCAAACATC---------TGCC
GGGGTCAGGGAAGAGGACATGCCCGGCCCTCGT---CTCGACAAGGCGATCGCCCTGGGAGGAGGTGTCCTAGGCTGGGT
CGACCTCTGGCGCGGCATTGTCACCTGCAACGTGTTTGACAAGAACCCTGTCCTATCTCTAATCCCGATACCCAAGCTTG
CATACTCTAATGAGGAACGGAGAGCTGCCCCGCGGCTGGTCCGGGATGTCACCTGCTGCA---ATGGTCACATCAAGTTT
GTCGAGCAGGAACTTCGGTTCAAAGTGTCTATTATTCCTAGAAAGACTCTAGAG------------GATAATGTTGATAG
CGTCGACATCATCTCCGATCCTCGGCCGCTCTCCCACAAGGAGGAGGATGCCCGTGCCAAACTCGTGCTAGCTGCTGTCT
GTCTTGGTTCGAAGCTCCGAACATGTGATAGGCATACCACCTGGAACGA---TTGGCGCAAGGGGCACACTGTTGATATG
GATGCCATCTCGGTTGACAACCCTGACCATGCTAGGTTGCTCCCACAGCTCTGGGATGCTCAAGC---CGGGAAATCAAC
TCTGTGGGATCTGTCTTCAACTTACCCCACCCTAGGCATCCAT---GGC------GACGACGTTATTTACATGGTGACTA
AGGTAAAGTTTCATGATAACAAGGCATGGATGATCGGTGTCGACCTTGCAAAAAGGGCGGTGGAAGTGCTCATACCAGTT
TCTTCACAGAGAGTCGGTAATTTCAAACCTGACATGATCCTCGCCTGTGAATTCTCTGAATATCTGAACGCAACTGCAAG
GTACATTTCTTTGGTTATTATA--TTTGCATATGGTATTTCCGTGAACC-------------------------------
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>chr4A_1335
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--------------------------------------------GCCGCGTCGACTATTTCGTCTACAAGGCCGGCCGCG
GCAAGCCGCCGTCGCTCACGCGGATTCCTCGTACTCCTCCTGGCACCGCCAACTCGTTACACAAGTGCGTCTTGCCGTTC
GATGACCA---------------AGGGGGATTCCTCATCGCCGATCTCTTCATGACGAAGCTCCGCTCAGACTACCAGCT
CCAAGTCTTCTCTTCCAAGTTCCAAGACGGGCAAGTGGACCATCATGGCATTGCGGTTGCAAACATC---------TGCC
GGGGTCAGGGAAGAGGACCTGCCCGGCCCTCGT---CTCGACAAGGCGATCGCGCTGGGAGGAGGTGTCGTAGGCTGGGT
CGACCTTTGGCGCGGCATTCTCACCTGCAACGTGTTTGACAAGGACCCTGTCCTATCTCTAATCCCGATACCCAAGCTTG
CATACTCAAATGAGGAACGGAGAGCTGCCCCGCGGCTGGTCCGGGATGTCACCTGCTGCA---ATGGTCGCATCAAGTTT
GTCGAGCAACAACTTCGGTTCAAAGTGTCTATTATTCCTAGAAAGACTCTCGAG------------GATAATGTTGACAG
CGCCGACATCATCTCTGATCCTCGGACGCTCTCCCACAAGGAGGAGGATGCCCGTGCCAAACCCGTGCTAGCTGCCGTCT
GTCTTGGTTGGAAGCTCCGAACATGTGATAGGCACACCACCTCGAACGA---TTGGCGCATGGGGCACACCATTGATATC
GATGCCATCTCGGTCGACAACCCTCACCATGCTAGGTTGCTCCCACAGCTCTGGGATGCTCAAGC---CGGGAAATCAAC
TCTGTGGGATCTGTCTTCAACTTACCCCACTCTAGGCATT---------GACGGCGGTGACGTTGTTTACATGATGACTA
AGGTAAAGTTTCGTGATAACAAGGCATGGATGATCGGTGTCGACCTTGCAAAAAGGGCGGTGCAAGTGCTCATACCAGTT
TCTTCAGAGAGAGTCGGTAATTTCAAACCGGACATGATCCTCGCCTGTGAATTCTCCGAATATCTGAACGCAACTCCAAT
GTAAATTTCTTTCGTCATTATATGTTTGCATATAGTATTTCCGTGAACC-------------------------------
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>SNPs
-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------
-----------SSSSSS----------------S--------------------------------S--------S-S--
----------S--S-S-----SS-------S-S-----------S---------S-------------------S----S
S--------------------S--S---------------SS----S---------S-----------------------
S-------------------------------------------------S-----SSS-----S----S-------S--
-------SS------------S----------------------------------------------------------
---S----------------------------------S-------------------S---------------------
----S---------------S-----------------------------------------------------------
---------S----S-------------------------------------------------------S---------
-------------S------SS--SSS-----------------------S--------------SS-SSSSS-------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------SS
S-SSSSSSSS-------------------------------------------------S------------SS------
-----SSS---------------S--S-------------------S-------------S-SSS----S----SSS---
---S-S--SSSSSSS---S----------------S---------S-S--------------------------------
------------------------------------------------------------S-------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
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------------S-------------------------------------------------------------------
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----------------------------------S--------------------------------------S------
--------------------------------------------------------------------------------
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-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------SSS----S-----------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-------------------------------------------------S-------------------------S----
----------------------------------------------------------------------------S---
----------------------------------S---------------------------------------------
-----------------S-----S----------------S---------------------------------------
--S--------------------------S-S--------------------S---------------------------
-----S----S-----------------------------------S----------------------S----------
----------S-------S-------------------S-----SS------------------------------S---
---SSSSSSSSSSSSSSSSSSSSSSS-------S-------------------------------SSSSS--------S-
--------S----------------------S---------------S-S-----------S------S---------S-
---------------S-----------------------------S--------------S-------------------
-S-------------------S---------------------------------------------------------S
-------S-------------------------S----S--------------------------------------SS-
-------S-----------------S--SS-SS-S-SSS----------------S------------------------
-----SSSSSSSSS
>forward_1556
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----------------TATACCCCCGATCGACACCA--------------------------------------------
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>reverse_3487
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----------------------------------------------AAACTTGCCACAACCTCTGC--------------
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