Multiple sequence alignment - TraesCS4D01G276400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G276400 chr4D 100.000 4674 0 0 1 4674 447632622 447637295 0.000000e+00 8632.0
1 TraesCS4D01G276400 chr4A 88.945 4577 301 102 4 4475 19629953 19625477 0.000000e+00 5459.0
2 TraesCS4D01G276400 chr4B 90.627 1675 103 21 2829 4487 560009425 560011061 0.000000e+00 2174.0
3 TraesCS4D01G276400 chr4B 88.799 1357 73 21 1575 2905 560008122 560009425 0.000000e+00 1591.0
4 TraesCS4D01G276400 chr4B 88.590 1227 81 29 327 1527 560006930 560008123 0.000000e+00 1435.0
5 TraesCS4D01G276400 chr4B 87.263 369 33 7 1 356 560006474 560006841 4.350000e-110 409.0
6 TraesCS4D01G276400 chr5B 83.253 621 69 13 2557 3164 655713810 655713212 5.320000e-149 538.0
7 TraesCS4D01G276400 chr6A 82.362 618 75 11 2555 3159 65557259 65556663 1.500000e-139 507.0
8 TraesCS4D01G276400 chrUn 81.931 404 48 10 2763 3164 39184545 39184925 7.550000e-83 318.0
9 TraesCS4D01G276400 chr3D 94.444 36 1 1 4328 4363 364736094 364736128 2.000000e-03 54.7
10 TraesCS4D01G276400 chr6B 100.000 28 0 0 4331 4358 696118218 696118245 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G276400 chr4D 447632622 447637295 4673 False 8632.00 8632 100.00000 1 4674 1 chr4D.!!$F1 4673
1 TraesCS4D01G276400 chr4A 19625477 19629953 4476 True 5459.00 5459 88.94500 4 4475 1 chr4A.!!$R1 4471
2 TraesCS4D01G276400 chr4B 560006474 560011061 4587 False 1402.25 2174 88.81975 1 4487 4 chr4B.!!$F1 4486
3 TraesCS4D01G276400 chr5B 655713212 655713810 598 True 538.00 538 83.25300 2557 3164 1 chr5B.!!$R1 607
4 TraesCS4D01G276400 chr6A 65556663 65557259 596 True 507.00 507 82.36200 2555 3159 1 chr6A.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 596 0.036388 GAGCGGTTCATCCTGTCCAA 60.036 55.0 0.00 0.00 0.0 3.53 F
1224 1436 0.038159 AGTCGAACGCAGGAAGAAGG 60.038 55.0 0.00 0.00 0.0 3.46 F
1225 1437 0.319641 GTCGAACGCAGGAAGAAGGT 60.320 55.0 0.00 0.00 0.0 3.50 F
2232 2482 0.534873 GTGAAGAGGACCAGAGGCTC 59.465 60.0 6.34 6.34 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 2051 0.883153 TCGTAACAGCAGCCGACTTA 59.117 50.0 0.0 0.0 0.0 2.24 R
2779 3041 1.864669 TTCTCATCCAAAATGCCCCC 58.135 50.0 0.0 0.0 0.0 5.40 R
3040 3384 2.191128 AGGAGACCAACACTTCATGC 57.809 50.0 0.0 0.0 0.0 4.06 R
4046 4409 0.529378 ATACGACGGGACAAGGACAC 59.471 55.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.109643 TGCAAGATGTTCATGTGCGC 60.110 50.000 0.00 0.00 38.05 6.09
34 35 0.374758 GATGTTCATGTGCGCGATGT 59.625 50.000 12.10 0.54 0.00 3.06
68 69 1.668919 GGACATTCGACGAGCTTGTGA 60.669 52.381 12.53 6.73 0.00 3.58
136 149 6.825610 TCACACCCAATTTTATCTTTTTGCT 58.174 32.000 0.00 0.00 0.00 3.91
139 152 6.866248 ACACCCAATTTTATCTTTTTGCTACG 59.134 34.615 0.00 0.00 0.00 3.51
297 313 3.875134 AGCCCGACACCGAATTAAATTAG 59.125 43.478 0.00 0.00 38.22 1.73
300 316 4.034742 CCCGACACCGAATTAAATTAGTGG 59.965 45.833 0.00 0.00 38.22 4.00
302 318 4.871557 CGACACCGAATTAAATTAGTGGGA 59.128 41.667 0.00 0.00 38.22 4.37
308 324 7.700656 CACCGAATTAAATTAGTGGGAAATGAC 59.299 37.037 0.00 0.00 0.00 3.06
309 325 7.614192 ACCGAATTAAATTAGTGGGAAATGACT 59.386 33.333 0.00 0.00 0.00 3.41
323 378 1.759445 AATGACTAGAGCACGAGGCAT 59.241 47.619 6.78 6.78 46.60 4.40
395 568 1.400737 GGCTAGATGACGTGTACCCT 58.599 55.000 0.00 0.00 0.00 4.34
408 581 1.349688 TGTACCCTTTGAGCGGTTCAT 59.650 47.619 0.00 0.00 35.27 2.57
414 593 1.734465 CTTTGAGCGGTTCATCCTGTC 59.266 52.381 0.00 0.00 35.27 3.51
417 596 0.036388 GAGCGGTTCATCCTGTCCAA 60.036 55.000 0.00 0.00 0.00 3.53
419 598 1.635663 GCGGTTCATCCTGTCCAACG 61.636 60.000 0.00 0.00 0.00 4.10
421 600 1.156736 GGTTCATCCTGTCCAACGTG 58.843 55.000 0.00 0.00 0.00 4.49
465 658 2.203209 CGGACAATAGGCCAGCCC 60.203 66.667 5.01 0.00 36.58 5.19
466 659 3.006677 GGACAATAGGCCAGCCCA 58.993 61.111 5.01 0.00 36.58 5.36
500 694 2.031919 ACGTTTCATGCAGCGGGA 59.968 55.556 6.55 0.00 0.00 5.14
535 729 2.195922 GACATGGCAAATTTCGCATCC 58.804 47.619 12.54 0.81 0.00 3.51
541 735 1.627879 CAAATTTCGCATCCAACCCG 58.372 50.000 0.00 0.00 0.00 5.28
568 762 4.222124 AGCCGAGAATTACAACCTTGAT 57.778 40.909 0.00 0.00 0.00 2.57
587 781 4.158786 TGATCAGGGAAAATCCTTGCAAA 58.841 39.130 0.00 0.00 42.72 3.68
610 804 8.462016 CAAACCGGATATTTTGAAGAAGAATCT 58.538 33.333 9.46 0.00 35.13 2.40
650 845 8.464770 TCTTTTCTTGACAAAAGAACACAATG 57.535 30.769 6.01 0.00 45.32 2.82
651 846 8.303156 TCTTTTCTTGACAAAAGAACACAATGA 58.697 29.630 6.01 0.00 45.32 2.57
674 879 4.889832 AATCAATCGTTGAAGATGGCTC 57.110 40.909 4.87 0.00 43.95 4.70
687 892 3.956744 AGATGGCTCCAAGAAGTTTACC 58.043 45.455 0.00 0.00 0.00 2.85
700 905 2.546778 AGTTTACCACACACACAGACG 58.453 47.619 0.00 0.00 0.00 4.18
734 939 1.066787 AGACCTAGAACAAGAAGCCGC 60.067 52.381 0.00 0.00 0.00 6.53
754 959 3.362596 CGCGTTTCACTTTTCTTCATCGA 60.363 43.478 0.00 0.00 0.00 3.59
757 962 5.625311 GCGTTTCACTTTTCTTCATCGAAAT 59.375 36.000 0.00 0.00 33.33 2.17
772 977 7.795482 TCATCGAAATAACACCCGAAATAAT 57.205 32.000 0.00 0.00 34.59 1.28
773 978 8.890124 TCATCGAAATAACACCCGAAATAATA 57.110 30.769 0.00 0.00 34.59 0.98
774 979 9.327628 TCATCGAAATAACACCCGAAATAATAA 57.672 29.630 0.00 0.00 34.59 1.40
866 1072 0.329931 TCCTTATCCGCAAAAGCCCA 59.670 50.000 0.00 0.00 0.00 5.36
879 1085 0.389948 AAGCCCAGAGTCGCGTTAAG 60.390 55.000 5.77 0.00 0.00 1.85
944 1150 1.160137 CAGCTTCGAGGTTTTCCAGG 58.840 55.000 0.00 0.00 43.73 4.45
1044 1254 0.326618 GATCCCTCCTTCCCAGTCCA 60.327 60.000 0.00 0.00 0.00 4.02
1046 1256 0.840722 TCCCTCCTTCCCAGTCCAAC 60.841 60.000 0.00 0.00 0.00 3.77
1051 1261 0.955919 CCTTCCCAGTCCAACTTCGC 60.956 60.000 0.00 0.00 0.00 4.70
1056 1266 2.048127 AGTCCAACTTCGCGCTCC 60.048 61.111 5.56 0.00 0.00 4.70
1100 1311 1.414527 GGTCGCTGCGTCTAGAAAGC 61.415 60.000 22.48 12.95 0.00 3.51
1161 1372 6.449698 GTTTTCCTTGATTTTGATCTGCTCA 58.550 36.000 0.00 0.00 0.00 4.26
1163 1374 3.693085 TCCTTGATTTTGATCTGCTCAGC 59.307 43.478 0.00 0.00 34.68 4.26
1166 1377 2.417586 TGATTTTGATCTGCTCAGCACG 59.582 45.455 0.00 0.00 34.68 5.34
1216 1427 1.113253 CTACGCATAGTCGAACGCAG 58.887 55.000 0.00 0.00 0.00 5.18
1223 1435 2.631418 TAGTCGAACGCAGGAAGAAG 57.369 50.000 0.00 0.00 0.00 2.85
1224 1436 0.038159 AGTCGAACGCAGGAAGAAGG 60.038 55.000 0.00 0.00 0.00 3.46
1225 1437 0.319641 GTCGAACGCAGGAAGAAGGT 60.320 55.000 0.00 0.00 0.00 3.50
1230 1442 1.201429 ACGCAGGAAGAAGGTGGGAT 61.201 55.000 0.00 0.00 0.00 3.85
1292 1504 6.575244 TTTAGGATGGAGACCATACATGTT 57.425 37.500 14.38 0.00 46.88 2.71
1293 1505 4.428294 AGGATGGAGACCATACATGTTG 57.572 45.455 14.38 2.25 46.88 3.33
1294 1506 3.137176 AGGATGGAGACCATACATGTTGG 59.863 47.826 19.38 19.38 46.88 3.77
1295 1507 3.136443 GGATGGAGACCATACATGTTGGA 59.864 47.826 24.75 9.62 45.26 3.53
1296 1508 3.912496 TGGAGACCATACATGTTGGAG 57.088 47.619 24.75 8.22 37.69 3.86
1297 1509 3.181329 TGGAGACCATACATGTTGGAGT 58.819 45.455 24.75 15.10 37.69 3.85
1298 1510 3.055167 TGGAGACCATACATGTTGGAGTG 60.055 47.826 24.75 9.74 37.69 3.51
1299 1511 3.055094 GGAGACCATACATGTTGGAGTGT 60.055 47.826 24.75 9.71 37.69 3.55
1300 1512 4.161565 GGAGACCATACATGTTGGAGTGTA 59.838 45.833 24.75 0.00 37.69 2.90
1301 1513 5.086104 AGACCATACATGTTGGAGTGTAC 57.914 43.478 24.75 12.88 37.69 2.90
1302 1514 4.530553 AGACCATACATGTTGGAGTGTACA 59.469 41.667 24.75 0.00 37.69 2.90
1306 1518 5.705441 CCATACATGTTGGAGTGTACACTTT 59.295 40.000 28.49 8.82 42.66 2.66
1312 1529 7.173218 ACATGTTGGAGTGTACACTTTAGATTG 59.827 37.037 28.49 21.98 42.66 2.67
1345 1562 7.642669 AGATGTATGCAACTTCAATTAATCGG 58.357 34.615 0.00 0.00 35.27 4.18
1375 1592 4.268359 GCTCAGATTTGAAACTGGGAGAT 58.732 43.478 10.25 0.00 36.82 2.75
1412 1629 2.634453 TGAGTTGCTCATCTGTCTTCCA 59.366 45.455 0.00 0.00 35.39 3.53
1449 1666 2.024176 ACCAGTACCCACAGATCACA 57.976 50.000 0.00 0.00 0.00 3.58
1508 1725 5.740099 TGTGAACGTAAAGCTTTTAGCAAAC 59.260 36.000 18.47 7.23 45.56 2.93
1546 1763 9.013229 AGTCATACTTTTTGTAGCATGAAATGA 57.987 29.630 0.00 0.00 39.78 2.57
1556 1773 6.977213 TGTAGCATGAAATGATCATTGATGG 58.023 36.000 26.80 17.72 39.99 3.51
1559 1776 7.591421 AGCATGAAATGATCATTGATGGTAA 57.409 32.000 27.77 9.19 39.99 2.85
1591 1808 9.593134 CTTGTTTATTAGAGAGTTCTGCACTAT 57.407 33.333 0.00 0.00 35.01 2.12
1834 2051 8.536407 GTTGTAAATTACGTTGATTTTGCAACT 58.464 29.630 25.10 0.00 44.50 3.16
1895 2113 1.144057 GCGGCTACCACTGCATAGT 59.856 57.895 0.00 0.00 41.79 2.12
1908 2126 5.477510 CACTGCATAGTCAGAAGAGAAGTT 58.522 41.667 0.00 0.00 37.51 2.66
1991 2233 0.919289 ATGTGTTACCCCTCCCCCAG 60.919 60.000 0.00 0.00 0.00 4.45
2055 2297 5.568685 CTGTAGACTTCTGCAGCTAGTTA 57.431 43.478 18.49 11.78 46.58 2.24
2057 2299 5.895928 TGTAGACTTCTGCAGCTAGTTATG 58.104 41.667 18.49 3.23 33.67 1.90
2091 2341 6.488006 AGATCCATGTAAACCATTGTAGATGC 59.512 38.462 0.00 0.00 0.00 3.91
2095 2345 7.831690 TCCATGTAAACCATTGTAGATGCTTAA 59.168 33.333 0.00 0.00 0.00 1.85
2130 2380 9.831737 CATGTTATAATTAGCTTCCTGCATAAC 57.168 33.333 0.00 0.44 45.94 1.89
2232 2482 0.534873 GTGAAGAGGACCAGAGGCTC 59.465 60.000 6.34 6.34 0.00 4.70
2312 2562 3.671008 TTGCTGCTCAAATCATTTGCT 57.329 38.095 5.12 0.00 40.43 3.91
2313 2563 2.954316 TGCTGCTCAAATCATTTGCTG 58.046 42.857 5.12 2.34 40.43 4.41
2314 2564 1.659098 GCTGCTCAAATCATTTGCTGC 59.341 47.619 16.24 16.24 40.43 5.25
2315 2565 2.674177 GCTGCTCAAATCATTTGCTGCT 60.674 45.455 20.73 0.00 42.47 4.24
2316 2566 3.179830 CTGCTCAAATCATTTGCTGCTC 58.820 45.455 20.73 5.32 40.43 4.26
2317 2567 2.559231 TGCTCAAATCATTTGCTGCTCA 59.441 40.909 20.73 7.21 40.43 4.26
2318 2568 3.006003 TGCTCAAATCATTTGCTGCTCAA 59.994 39.130 20.73 6.14 40.43 3.02
2397 2647 3.942130 AACCTGCTGGATGCTAAAAAC 57.058 42.857 17.64 0.00 43.37 2.43
2530 2781 4.339247 CCTATGTGGTTTGTCATTGATCCC 59.661 45.833 0.00 0.00 0.00 3.85
2551 2802 4.217767 CCCTTTTTGGCTACTTACTGTTCC 59.782 45.833 0.00 0.00 0.00 3.62
2779 3041 6.072673 AGTGGTACGCCTTCTTTATCTTTTTG 60.073 38.462 0.00 0.00 41.54 2.44
3040 3384 4.926140 AACTTTCTTCTTTTGCTCCCAG 57.074 40.909 0.00 0.00 0.00 4.45
3122 3466 4.023536 TCCGTATTCTTTTGTCAAGTTGCC 60.024 41.667 0.00 0.00 0.00 4.52
3135 3479 6.966021 TGTCAAGTTGCCTGTAATTTACTTC 58.034 36.000 7.99 0.00 0.00 3.01
3185 3529 9.820229 TCAATAATTTGAATTCGACAACAGTAC 57.180 29.630 0.04 0.00 38.90 2.73
3186 3530 9.825972 CAATAATTTGAATTCGACAACAGTACT 57.174 29.630 0.04 0.00 34.60 2.73
3213 3557 6.346477 ACTTATCTTTAGTCTCACTGCACA 57.654 37.500 0.00 0.00 0.00 4.57
3227 3571 8.269424 GTCTCACTGCACATAATTCTAAATACG 58.731 37.037 0.00 0.00 0.00 3.06
3228 3572 7.979537 TCTCACTGCACATAATTCTAAATACGT 59.020 33.333 0.00 0.00 0.00 3.57
3232 3576 9.595823 ACTGCACATAATTCTAAATACGTAGTT 57.404 29.630 13.33 13.33 37.78 2.24
3285 3629 3.580458 ACTGCTCTGTCTTGTACCATCTT 59.420 43.478 0.00 0.00 0.00 2.40
3326 3672 4.450419 GCCGAGTCCTTTCATTGATCATAG 59.550 45.833 0.00 0.00 0.00 2.23
3374 3720 5.001232 TCTTTTCCTTTTCCATACTCCACG 58.999 41.667 0.00 0.00 0.00 4.94
3398 3745 8.774586 ACGCAATAAGGAACATCATTCTAATAC 58.225 33.333 0.00 0.00 0.00 1.89
3403 3750 6.479972 AGGAACATCATTCTAATACGGACA 57.520 37.500 0.00 0.00 0.00 4.02
3483 3830 2.755650 CCTATCTGGACGCCATACAAC 58.244 52.381 0.00 0.00 38.35 3.32
3521 3868 1.486726 CCCAGCTAGGTACTTTCCAGG 59.513 57.143 0.00 0.00 41.75 4.45
3530 3877 2.904434 GGTACTTTCCAGGGTCTTCAGA 59.096 50.000 0.00 0.00 0.00 3.27
3538 3885 2.433970 CCAGGGTCTTCAGATCTCTTCC 59.566 54.545 0.00 0.00 0.00 3.46
3543 3890 3.530535 GTCTTCAGATCTCTTCCTTGCC 58.469 50.000 0.00 0.00 0.00 4.52
3546 3893 4.288105 TCTTCAGATCTCTTCCTTGCCTTT 59.712 41.667 0.00 0.00 0.00 3.11
3562 3917 6.609616 CCTTGCCTTTATTTCCCTTATAACCA 59.390 38.462 0.00 0.00 0.00 3.67
3580 3937 1.916181 CCACCCACTATTCTCCCTTGT 59.084 52.381 0.00 0.00 0.00 3.16
3585 3942 4.263506 ACCCACTATTCTCCCTTGTTCTTG 60.264 45.833 0.00 0.00 0.00 3.02
3594 3951 2.642311 TCCCTTGTTCTTGCCTGATGTA 59.358 45.455 0.00 0.00 0.00 2.29
3597 3954 3.191371 CCTTGTTCTTGCCTGATGTAACC 59.809 47.826 0.00 0.00 0.00 2.85
3600 3957 0.739462 TCTTGCCTGATGTAACCGCG 60.739 55.000 0.00 0.00 0.00 6.46
3601 3958 1.705337 CTTGCCTGATGTAACCGCGG 61.705 60.000 26.86 26.86 0.00 6.46
3751 4109 6.938030 TCACACCAAAAGTTACCGAATAAGAT 59.062 34.615 0.00 0.00 0.00 2.40
3752 4110 7.021196 CACACCAAAAGTTACCGAATAAGATG 58.979 38.462 0.00 0.00 0.00 2.90
3795 4153 1.389555 ACTCGTACCAGCATCGATCA 58.610 50.000 0.00 0.00 33.26 2.92
3803 4161 3.922910 ACCAGCATCGATCATGTATCAG 58.077 45.455 0.00 0.00 34.56 2.90
3821 4179 2.353269 TCAGTTGTGTGGTTAGTTTGCG 59.647 45.455 0.00 0.00 0.00 4.85
3925 4285 4.208355 CAACGGTGTAACGAAAACAGATG 58.792 43.478 0.00 0.00 38.12 2.90
3942 4302 5.423015 ACAGATGCATGTTCGTCTAAATCT 58.577 37.500 2.46 0.00 31.53 2.40
3943 4303 5.292834 ACAGATGCATGTTCGTCTAAATCTG 59.707 40.000 2.46 3.53 43.37 2.90
3946 4306 3.684305 TGCATGTTCGTCTAAATCTGTGG 59.316 43.478 0.00 0.00 0.00 4.17
3959 4319 0.950836 TCTGTGGGAAATGTTGCGTG 59.049 50.000 0.00 0.00 0.00 5.34
4021 4383 4.215827 CCTACCTGATCTCGCGTTAATACT 59.784 45.833 5.77 0.00 0.00 2.12
4039 4402 1.139058 ACTTTTCGTGTCTCACCTGCT 59.861 47.619 0.00 0.00 0.00 4.24
4040 4403 1.528586 CTTTTCGTGTCTCACCTGCTG 59.471 52.381 0.00 0.00 0.00 4.41
4041 4404 0.750249 TTTCGTGTCTCACCTGCTGA 59.250 50.000 0.00 0.00 0.00 4.26
4042 4405 0.032130 TTCGTGTCTCACCTGCTGAC 59.968 55.000 0.00 0.00 0.00 3.51
4043 4406 1.373497 CGTGTCTCACCTGCTGACC 60.373 63.158 0.00 0.00 0.00 4.02
4044 4407 1.810606 CGTGTCTCACCTGCTGACCT 61.811 60.000 0.00 0.00 0.00 3.85
4045 4408 0.394565 GTGTCTCACCTGCTGACCTT 59.605 55.000 0.00 0.00 0.00 3.50
4046 4409 0.394192 TGTCTCACCTGCTGACCTTG 59.606 55.000 0.00 0.00 0.00 3.61
4049 4412 0.107456 CTCACCTGCTGACCTTGTGT 59.893 55.000 0.00 0.00 0.00 3.72
4087 4450 8.414778 CGTATTCAGAGGGACTACTAAATCTTT 58.585 37.037 0.00 0.00 41.55 2.52
4338 4708 2.951642 CTCTTGAGGCTGTTTGGTTTGA 59.048 45.455 0.00 0.00 0.00 2.69
4370 4740 1.425031 CATGCCGATGTGTTGACCG 59.575 57.895 0.00 0.00 0.00 4.79
4380 4750 4.625742 CGATGTGTTGACCGAGTCTAAAAT 59.374 41.667 5.77 0.00 33.15 1.82
4390 4761 9.444600 TTGACCGAGTCTAAAATTTTAGCTATT 57.555 29.630 26.48 12.08 39.90 1.73
4412 4783 9.233232 CTATTAATTCGTTGGCTACCAAATTTC 57.767 33.333 0.00 0.00 45.73 2.17
4415 4786 3.492337 TCGTTGGCTACCAAATTTCCTT 58.508 40.909 0.00 0.00 45.73 3.36
4422 4793 4.161377 GGCTACCAAATTTCCTTGCCAATA 59.839 41.667 13.61 0.00 38.99 1.90
4455 4826 5.299782 AGTCGCCAACTTTTACCAATTGTTA 59.700 36.000 4.43 0.00 33.03 2.41
4456 4827 5.978322 GTCGCCAACTTTTACCAATTGTTAA 59.022 36.000 4.43 0.00 0.00 2.01
4461 4832 7.254624 GCCAACTTTTACCAATTGTTAACTTGG 60.255 37.037 19.83 19.83 46.03 3.61
4482 4853 4.394099 GCAAAATGCCAAATCTTGACAC 57.606 40.909 0.00 0.00 37.42 3.67
4487 4858 3.451141 TGCCAAATCTTGACACCAAAC 57.549 42.857 0.00 0.00 0.00 2.93
4488 4859 2.102252 TGCCAAATCTTGACACCAAACC 59.898 45.455 0.00 0.00 0.00 3.27
4489 4860 2.102252 GCCAAATCTTGACACCAAACCA 59.898 45.455 0.00 0.00 0.00 3.67
4490 4861 3.431486 GCCAAATCTTGACACCAAACCAA 60.431 43.478 0.00 0.00 0.00 3.67
4491 4862 4.370917 CCAAATCTTGACACCAAACCAAG 58.629 43.478 0.00 0.00 38.79 3.61
4492 4863 4.141959 CCAAATCTTGACACCAAACCAAGT 60.142 41.667 0.00 0.00 38.61 3.16
4493 4864 5.418676 CAAATCTTGACACCAAACCAAGTT 58.581 37.500 0.00 0.00 38.61 2.66
4494 4865 4.918810 ATCTTGACACCAAACCAAGTTC 57.081 40.909 0.00 0.00 38.61 3.01
4495 4866 3.963129 TCTTGACACCAAACCAAGTTCT 58.037 40.909 0.00 0.00 38.61 3.01
4496 4867 3.694072 TCTTGACACCAAACCAAGTTCTG 59.306 43.478 0.00 0.00 38.61 3.02
4506 4877 2.656947 CCAAGTTCTGGGGTTCTTCA 57.343 50.000 0.00 0.00 42.17 3.02
4507 4878 2.944129 CCAAGTTCTGGGGTTCTTCAA 58.056 47.619 0.00 0.00 42.17 2.69
4508 4879 3.295973 CCAAGTTCTGGGGTTCTTCAAA 58.704 45.455 0.00 0.00 42.17 2.69
4509 4880 3.897505 CCAAGTTCTGGGGTTCTTCAAAT 59.102 43.478 0.00 0.00 42.17 2.32
4510 4881 4.262164 CCAAGTTCTGGGGTTCTTCAAATG 60.262 45.833 0.00 0.00 42.17 2.32
4511 4882 4.184649 AGTTCTGGGGTTCTTCAAATGT 57.815 40.909 0.00 0.00 0.00 2.71
4512 4883 4.145052 AGTTCTGGGGTTCTTCAAATGTC 58.855 43.478 0.00 0.00 0.00 3.06
4513 4884 4.141158 AGTTCTGGGGTTCTTCAAATGTCT 60.141 41.667 0.00 0.00 0.00 3.41
4514 4885 3.754965 TCTGGGGTTCTTCAAATGTCTG 58.245 45.455 0.00 0.00 0.00 3.51
4515 4886 2.229784 CTGGGGTTCTTCAAATGTCTGC 59.770 50.000 0.00 0.00 0.00 4.26
4516 4887 1.200020 GGGGTTCTTCAAATGTCTGCG 59.800 52.381 0.00 0.00 0.00 5.18
4517 4888 1.200020 GGGTTCTTCAAATGTCTGCGG 59.800 52.381 0.00 0.00 0.00 5.69
4518 4889 2.151202 GGTTCTTCAAATGTCTGCGGA 58.849 47.619 0.00 0.00 0.00 5.54
4519 4890 2.095718 GGTTCTTCAAATGTCTGCGGAC 60.096 50.000 19.20 19.20 42.42 4.79
4526 4897 2.335011 TGTCTGCGGACACGTCTG 59.665 61.111 24.54 1.44 46.19 3.51
4527 4898 2.430921 GTCTGCGGACACGTCTGG 60.431 66.667 21.02 0.00 43.45 3.86
4528 4899 3.680786 TCTGCGGACACGTCTGGG 61.681 66.667 8.06 0.00 43.45 4.45
4549 4920 3.285371 GTCCGTGGACATCCGACT 58.715 61.111 14.10 0.00 44.02 4.18
4550 4921 2.485677 GTCCGTGGACATCCGACTA 58.514 57.895 14.10 0.00 44.02 2.59
4551 4922 0.381089 GTCCGTGGACATCCGACTAG 59.619 60.000 14.10 0.00 44.02 2.57
4552 4923 0.253894 TCCGTGGACATCCGACTAGA 59.746 55.000 0.00 0.00 39.43 2.43
4553 4924 0.381089 CCGTGGACATCCGACTAGAC 59.619 60.000 0.00 0.00 39.43 2.59
4554 4925 0.027716 CGTGGACATCCGACTAGACG 59.972 60.000 7.66 7.66 39.43 4.18
4564 4935 2.690173 CGACTAGACGGACATCATCC 57.310 55.000 6.72 0.00 45.20 3.51
4578 4949 5.624159 GACATCATCCAACCATATCCTTCA 58.376 41.667 0.00 0.00 0.00 3.02
4579 4950 6.017211 ACATCATCCAACCATATCCTTCAA 57.983 37.500 0.00 0.00 0.00 2.69
4580 4951 6.434302 ACATCATCCAACCATATCCTTCAAA 58.566 36.000 0.00 0.00 0.00 2.69
4581 4952 7.071273 ACATCATCCAACCATATCCTTCAAAT 58.929 34.615 0.00 0.00 0.00 2.32
4582 4953 8.226810 ACATCATCCAACCATATCCTTCAAATA 58.773 33.333 0.00 0.00 0.00 1.40
4583 4954 9.081204 CATCATCCAACCATATCCTTCAAATAA 57.919 33.333 0.00 0.00 0.00 1.40
4584 4955 8.696043 TCATCCAACCATATCCTTCAAATAAG 57.304 34.615 0.00 0.00 0.00 1.73
4585 4956 7.725397 TCATCCAACCATATCCTTCAAATAAGG 59.275 37.037 0.00 0.00 38.78 2.69
4586 4957 5.833131 TCCAACCATATCCTTCAAATAAGGC 59.167 40.000 0.00 0.00 37.34 4.35
4587 4958 5.278463 CCAACCATATCCTTCAAATAAGGCG 60.278 44.000 0.00 0.00 37.34 5.52
4588 4959 4.398319 ACCATATCCTTCAAATAAGGCGG 58.602 43.478 0.00 0.68 37.34 6.13
4589 4960 4.104102 ACCATATCCTTCAAATAAGGCGGA 59.896 41.667 0.00 0.00 37.34 5.54
4590 4961 4.455877 CCATATCCTTCAAATAAGGCGGAC 59.544 45.833 0.00 0.00 37.34 4.79
4591 4962 3.644966 ATCCTTCAAATAAGGCGGACA 57.355 42.857 0.00 0.00 37.34 4.02
4592 4963 2.706890 TCCTTCAAATAAGGCGGACAC 58.293 47.619 0.00 0.00 37.34 3.67
4593 4964 2.304761 TCCTTCAAATAAGGCGGACACT 59.695 45.455 0.00 0.00 37.34 3.55
4594 4965 3.081804 CCTTCAAATAAGGCGGACACTT 58.918 45.455 0.00 0.00 0.00 3.16
4595 4966 4.020039 TCCTTCAAATAAGGCGGACACTTA 60.020 41.667 0.00 0.00 37.34 2.24
4596 4967 4.332819 CCTTCAAATAAGGCGGACACTTAG 59.667 45.833 0.00 0.00 34.25 2.18
4597 4968 4.811969 TCAAATAAGGCGGACACTTAGA 57.188 40.909 0.00 0.00 34.25 2.10
4598 4969 4.501071 TCAAATAAGGCGGACACTTAGAC 58.499 43.478 0.00 0.00 34.25 2.59
4599 4970 4.020928 TCAAATAAGGCGGACACTTAGACA 60.021 41.667 0.00 0.00 34.25 3.41
4600 4971 4.755266 AATAAGGCGGACACTTAGACAT 57.245 40.909 0.00 0.00 34.25 3.06
4601 4972 2.674796 AAGGCGGACACTTAGACATC 57.325 50.000 0.00 0.00 0.00 3.06
4602 4973 0.824759 AGGCGGACACTTAGACATCC 59.175 55.000 0.00 0.00 0.00 3.51
4603 4974 0.535335 GGCGGACACTTAGACATCCA 59.465 55.000 0.00 0.00 0.00 3.41
4604 4975 1.471676 GGCGGACACTTAGACATCCAG 60.472 57.143 0.00 0.00 0.00 3.86
4605 4976 1.927895 CGGACACTTAGACATCCAGC 58.072 55.000 0.00 0.00 0.00 4.85
4606 4977 1.471676 CGGACACTTAGACATCCAGCC 60.472 57.143 0.00 0.00 0.00 4.85
4607 4978 1.471676 GGACACTTAGACATCCAGCCG 60.472 57.143 0.00 0.00 0.00 5.52
4608 4979 0.537188 ACACTTAGACATCCAGCCGG 59.463 55.000 0.00 0.00 0.00 6.13
4609 4980 0.179073 CACTTAGACATCCAGCCGGG 60.179 60.000 2.18 0.00 38.37 5.73
4610 4981 1.227674 CTTAGACATCCAGCCGGGC 60.228 63.158 12.11 12.11 36.21 6.13
4611 4982 2.978452 CTTAGACATCCAGCCGGGCG 62.978 65.000 14.39 8.61 36.21 6.13
4613 4984 2.914756 TAGACATCCAGCCGGGCGTA 62.915 60.000 14.39 3.21 36.21 4.42
4614 4985 4.157120 ACATCCAGCCGGGCGTAC 62.157 66.667 14.39 0.00 36.21 3.67
4615 4986 4.155733 CATCCAGCCGGGCGTACA 62.156 66.667 14.39 0.00 36.21 2.90
4616 4987 3.161450 ATCCAGCCGGGCGTACAT 61.161 61.111 14.39 1.59 36.21 2.29
4617 4988 3.165160 ATCCAGCCGGGCGTACATC 62.165 63.158 14.39 0.00 36.21 3.06
4618 4989 4.155733 CCAGCCGGGCGTACATCA 62.156 66.667 14.39 0.00 0.00 3.07
4619 4990 2.108976 CAGCCGGGCGTACATCAT 59.891 61.111 14.39 0.00 0.00 2.45
4620 4991 1.956170 CAGCCGGGCGTACATCATC 60.956 63.158 14.39 0.00 0.00 2.92
4621 4992 2.665185 GCCGGGCGTACATCATCC 60.665 66.667 1.81 0.00 0.00 3.51
4622 4993 2.818841 CCGGGCGTACATCATCCA 59.181 61.111 0.00 0.00 0.00 3.41
4623 4994 1.145156 CCGGGCGTACATCATCCAA 59.855 57.895 0.00 0.00 0.00 3.53
4624 4995 0.250295 CCGGGCGTACATCATCCAAT 60.250 55.000 0.00 0.00 0.00 3.16
4625 4996 1.148310 CGGGCGTACATCATCCAATC 58.852 55.000 0.00 0.00 0.00 2.67
4626 4997 1.148310 GGGCGTACATCATCCAATCG 58.852 55.000 0.00 0.00 0.00 3.34
4627 4998 1.540363 GGGCGTACATCATCCAATCGT 60.540 52.381 0.00 0.00 0.00 3.73
4628 4999 2.288579 GGGCGTACATCATCCAATCGTA 60.289 50.000 0.00 0.00 0.00 3.43
4629 5000 3.585862 GGCGTACATCATCCAATCGTAT 58.414 45.455 0.00 0.00 0.00 3.06
4630 5001 3.612860 GGCGTACATCATCCAATCGTATC 59.387 47.826 0.00 0.00 0.00 2.24
4631 5002 3.612860 GCGTACATCATCCAATCGTATCC 59.387 47.826 0.00 0.00 0.00 2.59
4632 5003 4.174009 CGTACATCATCCAATCGTATCCC 58.826 47.826 0.00 0.00 0.00 3.85
4633 5004 4.082190 CGTACATCATCCAATCGTATCCCT 60.082 45.833 0.00 0.00 0.00 4.20
4634 5005 4.982241 ACATCATCCAATCGTATCCCTT 57.018 40.909 0.00 0.00 0.00 3.95
4635 5006 6.349860 CGTACATCATCCAATCGTATCCCTTA 60.350 42.308 0.00 0.00 0.00 2.69
4636 5007 6.433847 ACATCATCCAATCGTATCCCTTAA 57.566 37.500 0.00 0.00 0.00 1.85
4637 5008 6.837312 ACATCATCCAATCGTATCCCTTAAA 58.163 36.000 0.00 0.00 0.00 1.52
4638 5009 7.461749 ACATCATCCAATCGTATCCCTTAAAT 58.538 34.615 0.00 0.00 0.00 1.40
4639 5010 8.602424 ACATCATCCAATCGTATCCCTTAAATA 58.398 33.333 0.00 0.00 0.00 1.40
4640 5011 9.448438 CATCATCCAATCGTATCCCTTAAATAA 57.552 33.333 0.00 0.00 0.00 1.40
4641 5012 9.672673 ATCATCCAATCGTATCCCTTAAATAAG 57.327 33.333 0.00 0.00 0.00 1.73
4651 5022 2.896168 CCTTAAATAAGGCGGACACGA 58.104 47.619 6.30 0.00 45.56 4.35
4652 5023 2.864343 CCTTAAATAAGGCGGACACGAG 59.136 50.000 6.30 0.00 45.56 4.18
4653 5024 3.429822 CCTTAAATAAGGCGGACACGAGA 60.430 47.826 6.30 0.00 45.56 4.04
4654 5025 2.005971 AAATAAGGCGGACACGAGAC 57.994 50.000 0.00 0.00 44.60 3.36
4655 5026 0.892755 AATAAGGCGGACACGAGACA 59.107 50.000 0.00 0.00 44.60 3.41
4656 5027 1.112113 ATAAGGCGGACACGAGACAT 58.888 50.000 0.00 0.00 44.60 3.06
4657 5028 0.454600 TAAGGCGGACACGAGACATC 59.545 55.000 0.00 0.00 44.60 3.06
4667 5038 4.933064 GAGACATCGAGCCGGGCG 62.933 72.222 14.39 0.00 0.00 6.13
4669 5040 3.896133 GACATCGAGCCGGGCGTA 61.896 66.667 14.39 3.21 0.00 4.42
4670 5041 4.203076 ACATCGAGCCGGGCGTAC 62.203 66.667 14.39 8.50 0.00 3.67
4671 5042 4.201679 CATCGAGCCGGGCGTACA 62.202 66.667 14.39 0.00 0.00 2.90
4672 5043 3.224324 ATCGAGCCGGGCGTACAT 61.224 61.111 14.39 1.59 0.00 2.29
4673 5044 3.208884 ATCGAGCCGGGCGTACATC 62.209 63.158 14.39 4.13 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.957680 ACATGAACATCTTGCACCACAA 59.042 40.909 0.00 0.00 36.62 3.33
29 30 1.984990 CCAAATTTTGCACGGACATCG 59.015 47.619 3.50 0.00 45.88 3.84
34 35 3.648009 GAATGTCCAAATTTTGCACGGA 58.352 40.909 3.50 0.00 0.00 4.69
139 152 1.464997 GTTTGGACATTCGAGGTGCTC 59.535 52.381 11.06 4.16 0.00 4.26
170 183 4.282957 TCAAATGTGTGGTGTTTGCCATAT 59.717 37.500 0.00 0.00 41.08 1.78
171 184 3.638627 TCAAATGTGTGGTGTTTGCCATA 59.361 39.130 0.00 0.00 41.08 2.74
172 185 2.433604 TCAAATGTGTGGTGTTTGCCAT 59.566 40.909 0.00 0.00 41.08 4.40
173 186 1.827344 TCAAATGTGTGGTGTTTGCCA 59.173 42.857 0.00 0.00 33.90 4.92
174 187 2.472816 CTCAAATGTGTGGTGTTTGCC 58.527 47.619 0.00 0.00 33.90 4.52
175 188 1.860326 GCTCAAATGTGTGGTGTTTGC 59.140 47.619 0.00 0.00 33.90 3.68
176 189 3.162202 TGCTCAAATGTGTGGTGTTTG 57.838 42.857 0.00 0.00 34.90 2.93
182 195 2.029739 TGCAAGATGCTCAAATGTGTGG 60.030 45.455 3.78 0.00 45.31 4.17
257 271 4.642429 GGGCTTATCTACACCGATGAATT 58.358 43.478 0.00 0.00 0.00 2.17
297 313 2.094182 TCGTGCTCTAGTCATTTCCCAC 60.094 50.000 0.00 0.00 0.00 4.61
300 316 2.815478 CCTCGTGCTCTAGTCATTTCC 58.185 52.381 0.00 0.00 0.00 3.13
302 318 1.550524 TGCCTCGTGCTCTAGTCATTT 59.449 47.619 0.00 0.00 42.00 2.32
308 324 0.249238 GGTGATGCCTCGTGCTCTAG 60.249 60.000 1.74 0.00 42.00 2.43
309 325 1.816537 GGTGATGCCTCGTGCTCTA 59.183 57.895 1.74 0.00 42.00 2.43
323 378 1.000060 GTACTTGTACTGGTGCGGTGA 60.000 52.381 3.88 0.00 0.00 4.02
392 565 0.035056 AGGATGAACCGCTCAAAGGG 60.035 55.000 0.00 0.00 44.74 3.95
395 568 1.610624 GGACAGGATGAACCGCTCAAA 60.611 52.381 0.00 0.00 44.74 2.69
465 658 1.679641 TGATGGCATGGGCAGTGTG 60.680 57.895 3.81 0.00 42.43 3.82
466 659 1.679977 GTGATGGCATGGGCAGTGT 60.680 57.895 3.81 0.00 42.43 3.55
500 694 4.142038 GCCATGTCCCCGTAAAATATTCT 58.858 43.478 0.00 0.00 0.00 2.40
568 762 2.632512 GGTTTGCAAGGATTTTCCCTGA 59.367 45.455 0.00 0.00 37.19 3.86
587 781 7.415653 GCAAGATTCTTCTTCAAAATATCCGGT 60.416 37.037 0.00 0.00 40.28 5.28
610 804 5.659440 AGAAAAGAAAAGGTTGTCTGCAA 57.341 34.783 0.00 0.00 0.00 4.08
645 840 7.543172 CCATCTTCAACGATTGATTTTCATTGT 59.457 33.333 0.00 0.00 39.84 2.71
646 841 7.463648 GCCATCTTCAACGATTGATTTTCATTG 60.464 37.037 0.00 0.00 39.84 2.82
647 842 6.532657 GCCATCTTCAACGATTGATTTTCATT 59.467 34.615 0.00 0.00 39.84 2.57
649 844 5.183713 AGCCATCTTCAACGATTGATTTTCA 59.816 36.000 0.00 0.00 39.84 2.69
650 845 5.644644 AGCCATCTTCAACGATTGATTTTC 58.355 37.500 0.00 0.00 39.84 2.29
651 846 5.393461 GGAGCCATCTTCAACGATTGATTTT 60.393 40.000 0.00 0.00 39.84 1.82
674 879 3.692101 TGTGTGTGTGGTAAACTTCTTGG 59.308 43.478 0.00 0.00 0.00 3.61
687 892 2.477189 GGTTTTTCCGTCTGTGTGTGTG 60.477 50.000 0.00 0.00 0.00 3.82
700 905 1.977056 AGGTCTTGGTCGGTTTTTCC 58.023 50.000 0.00 0.00 0.00 3.13
734 939 8.618952 GTTATTTCGATGAAGAAAAGTGAAACG 58.381 33.333 0.00 0.00 42.52 3.60
754 959 6.238814 CGGCCTTATTATTTCGGGTGTTATTT 60.239 38.462 0.00 0.00 0.00 1.40
757 962 4.128643 CGGCCTTATTATTTCGGGTGTTA 58.871 43.478 0.00 0.00 0.00 2.41
772 977 2.614983 GCGGTCAATATTTTCGGCCTTA 59.385 45.455 0.00 0.00 0.00 2.69
773 978 1.404035 GCGGTCAATATTTTCGGCCTT 59.596 47.619 0.00 0.00 0.00 4.35
774 979 1.021968 GCGGTCAATATTTTCGGCCT 58.978 50.000 0.00 0.00 0.00 5.19
805 1010 2.257207 GATGTAGGCCCCTGCTATGTA 58.743 52.381 0.00 0.00 37.74 2.29
808 1013 0.178932 TCGATGTAGGCCCCTGCTAT 60.179 55.000 0.00 0.00 37.74 2.97
809 1014 0.397957 TTCGATGTAGGCCCCTGCTA 60.398 55.000 0.00 0.00 37.74 3.49
810 1015 1.271840 TTTCGATGTAGGCCCCTGCT 61.272 55.000 0.00 0.00 37.74 4.24
812 1017 1.949525 CAATTTCGATGTAGGCCCCTG 59.050 52.381 0.00 0.00 0.00 4.45
866 1072 1.429463 CTTTGGCTTAACGCGACTCT 58.571 50.000 15.93 0.00 40.44 3.24
879 1085 3.242518 GTTTCTTATGAACCGCTTTGGC 58.757 45.455 0.00 0.00 43.94 4.52
944 1150 0.829990 CTCTGCCTTCCTTCCTCTCC 59.170 60.000 0.00 0.00 0.00 3.71
976 1186 1.004560 CGGCCTCTTGCAGTCTCAA 60.005 57.895 0.00 0.00 43.89 3.02
977 1187 2.659016 CGGCCTCTTGCAGTCTCA 59.341 61.111 0.00 0.00 43.89 3.27
1044 1254 0.249911 AGAAACAGGAGCGCGAAGTT 60.250 50.000 12.10 3.03 0.00 2.66
1046 1256 1.784062 CAGAAACAGGAGCGCGAAG 59.216 57.895 12.10 0.00 0.00 3.79
1051 1261 0.460987 CTAGGGCAGAAACAGGAGCG 60.461 60.000 0.00 0.00 0.00 5.03
1056 1266 5.359194 TCTAAATCCTAGGGCAGAAACAG 57.641 43.478 9.46 0.00 0.00 3.16
1120 1331 2.509336 CCTTCACGAATCGCGCCT 60.509 61.111 0.00 0.00 46.04 5.52
1133 1344 6.367149 GCAGATCAAAATCAAGGAAAACCTTC 59.633 38.462 0.00 0.00 34.07 3.46
1161 1372 1.677552 CTACCCAAACCCTCGTGCT 59.322 57.895 0.00 0.00 0.00 4.40
1163 1374 0.688487 TTCCTACCCAAACCCTCGTG 59.312 55.000 0.00 0.00 0.00 4.35
1166 1377 2.158652 GCCTATTCCTACCCAAACCCTC 60.159 54.545 0.00 0.00 0.00 4.30
1197 1408 1.113253 CTGCGTTCGACTATGCGTAG 58.887 55.000 11.54 11.54 32.65 3.51
1200 1411 0.800683 TTCCTGCGTTCGACTATGCG 60.801 55.000 0.00 0.00 32.65 4.73
1202 1413 2.561733 TCTTCCTGCGTTCGACTATG 57.438 50.000 0.00 0.00 0.00 2.23
1216 1427 0.999712 TCCCAATCCCACCTTCTTCC 59.000 55.000 0.00 0.00 0.00 3.46
1223 1435 1.411644 GGAGGAAATCCCAATCCCACC 60.412 57.143 0.00 0.00 43.01 4.61
1224 1436 2.073252 GGAGGAAATCCCAATCCCAC 57.927 55.000 0.00 0.00 43.01 4.61
1292 1504 5.483685 AGCAATCTAAAGTGTACACTCCA 57.516 39.130 28.04 17.28 41.58 3.86
1293 1505 6.864342 TCTAGCAATCTAAAGTGTACACTCC 58.136 40.000 28.04 9.60 41.58 3.85
1294 1506 8.934507 AATCTAGCAATCTAAAGTGTACACTC 57.065 34.615 28.04 13.23 41.58 3.51
1306 1518 9.645059 GTTGCATACATCTAATCTAGCAATCTA 57.355 33.333 0.00 0.00 41.90 1.98
1312 1529 7.953158 TGAAGTTGCATACATCTAATCTAGC 57.047 36.000 0.00 0.00 0.00 3.42
1330 1547 5.705902 CCGGAAAACCGATTAATTGAAGTT 58.294 37.500 10.28 0.00 34.88 2.66
1331 1548 4.380128 GCCGGAAAACCGATTAATTGAAGT 60.380 41.667 5.05 0.00 34.88 3.01
1345 1562 3.915437 TTCAAATCTGAGCCGGAAAAC 57.085 42.857 5.05 0.00 31.69 2.43
1375 1592 5.868043 CAACTCATGCTACACATCTGAAA 57.132 39.130 0.00 0.00 36.64 2.69
1404 1621 1.075374 CCAACAGGGGAATGGAAGACA 59.925 52.381 0.00 0.00 36.27 3.41
1412 1629 3.716872 CTGGTATACTCCAACAGGGGAAT 59.283 47.826 2.25 0.00 36.27 3.01
1449 1666 7.286316 GGTTTTTCCATCTCAATATGTCCATCT 59.714 37.037 0.00 0.00 35.97 2.90
1530 1747 7.923878 CCATCAATGATCATTTCATGCTACAAA 59.076 33.333 18.41 0.00 44.51 2.83
1532 1749 6.548251 ACCATCAATGATCATTTCATGCTACA 59.452 34.615 18.41 0.00 44.51 2.74
1533 1750 6.978338 ACCATCAATGATCATTTCATGCTAC 58.022 36.000 18.41 0.00 44.51 3.58
1535 1752 7.591421 TTACCATCAATGATCATTTCATGCT 57.409 32.000 18.41 12.46 44.51 3.79
1545 1762 8.682936 AACAAGGAGTATTACCATCAATGATC 57.317 34.615 0.00 0.00 0.00 2.92
1562 1779 7.064016 GTGCAGAACTCTCTAATAAACAAGGAG 59.936 40.741 0.00 0.00 0.00 3.69
1591 1808 6.204688 GTGGAAAGATTTGTATGTGACAGTGA 59.795 38.462 0.00 0.00 39.88 3.41
1834 2051 0.883153 TCGTAACAGCAGCCGACTTA 59.117 50.000 0.00 0.00 0.00 2.24
1895 2113 7.388776 CCATGTGATTTACAACTTCTCTTCTGA 59.611 37.037 0.00 0.00 43.77 3.27
1908 2126 7.882791 ACATTCTTACAGACCATGTGATTTACA 59.117 33.333 0.00 0.00 43.80 2.41
2053 2295 5.378230 ACATGGATCTTCCTTCAGCATAA 57.622 39.130 0.00 0.00 37.46 1.90
2055 2297 3.947612 ACATGGATCTTCCTTCAGCAT 57.052 42.857 0.00 0.00 37.46 3.79
2057 2299 4.336713 GGTTTACATGGATCTTCCTTCAGC 59.663 45.833 0.00 0.00 37.46 4.26
2068 2310 6.367983 AGCATCTACAATGGTTTACATGGAT 58.632 36.000 0.00 0.00 40.44 3.41
2130 2380 9.793252 GGCCATGCAAAAGATATTGTATTATAG 57.207 33.333 0.00 0.00 34.03 1.31
2308 2558 3.257375 AGAGCAAATGATTTGAGCAGCAA 59.743 39.130 21.14 0.00 43.26 3.91
2309 2559 2.823747 AGAGCAAATGATTTGAGCAGCA 59.176 40.909 21.14 0.00 43.26 4.41
2310 2560 3.505464 AGAGCAAATGATTTGAGCAGC 57.495 42.857 21.14 5.63 43.26 5.25
2311 2561 5.814764 ACTAGAGCAAATGATTTGAGCAG 57.185 39.130 21.14 13.00 43.26 4.24
2312 2562 6.409704 ACTACTAGAGCAAATGATTTGAGCA 58.590 36.000 21.14 0.28 43.26 4.26
2313 2563 6.917217 ACTACTAGAGCAAATGATTTGAGC 57.083 37.500 21.14 11.36 43.26 4.26
2530 2781 4.514066 ACGGAACAGTAAGTAGCCAAAAAG 59.486 41.667 0.00 0.00 0.00 2.27
2551 2802 4.627467 TTTGACAACCAAAATGGAAACACG 59.373 37.500 2.85 0.00 40.96 4.49
2779 3041 1.864669 TTCTCATCCAAAATGCCCCC 58.135 50.000 0.00 0.00 0.00 5.40
2864 3204 6.633500 TCCTGGACAACATAAGAAAACAAG 57.367 37.500 0.00 0.00 0.00 3.16
3040 3384 2.191128 AGGAGACCAACACTTCATGC 57.809 50.000 0.00 0.00 0.00 4.06
3184 3528 8.030106 GCAGTGAGACTAAAGATAAGTAACAGT 58.970 37.037 0.00 0.00 0.00 3.55
3185 3529 8.029522 TGCAGTGAGACTAAAGATAAGTAACAG 58.970 37.037 0.00 0.00 0.00 3.16
3186 3530 7.813148 GTGCAGTGAGACTAAAGATAAGTAACA 59.187 37.037 0.00 0.00 0.00 2.41
3250 3594 8.725148 CAAGACAGAGCAGTAATTGTTCTAAAT 58.275 33.333 0.00 0.00 44.46 1.40
3251 3595 7.715249 ACAAGACAGAGCAGTAATTGTTCTAAA 59.285 33.333 0.00 0.00 44.46 1.85
3252 3596 7.217200 ACAAGACAGAGCAGTAATTGTTCTAA 58.783 34.615 0.00 0.00 44.46 2.10
3253 3597 6.759272 ACAAGACAGAGCAGTAATTGTTCTA 58.241 36.000 0.00 0.00 44.46 2.10
3255 3599 5.931441 ACAAGACAGAGCAGTAATTGTTC 57.069 39.130 0.00 0.00 37.30 3.18
3269 3613 5.760253 ACTTCACAAAGATGGTACAAGACAG 59.240 40.000 0.00 0.00 37.73 3.51
3285 3629 3.069872 TCGGCTGGTAGTTAACTTCACAA 59.930 43.478 14.49 0.00 0.00 3.33
3345 3691 9.462606 GGAGTATGGAAAAGGAAAAGATCTTTA 57.537 33.333 20.76 2.68 33.40 1.85
3346 3692 7.950124 TGGAGTATGGAAAAGGAAAAGATCTTT 59.050 33.333 15.11 15.11 35.01 2.52
3347 3693 7.394641 GTGGAGTATGGAAAAGGAAAAGATCTT 59.605 37.037 0.88 0.88 0.00 2.40
3348 3694 6.887002 GTGGAGTATGGAAAAGGAAAAGATCT 59.113 38.462 0.00 0.00 0.00 2.75
3349 3695 6.183360 CGTGGAGTATGGAAAAGGAAAAGATC 60.183 42.308 0.00 0.00 0.00 2.75
3350 3696 5.648092 CGTGGAGTATGGAAAAGGAAAAGAT 59.352 40.000 0.00 0.00 0.00 2.40
3365 3711 4.481368 TGTTCCTTATTGCGTGGAGTAT 57.519 40.909 0.00 0.00 0.00 2.12
3374 3720 8.230486 CCGTATTAGAATGATGTTCCTTATTGC 58.770 37.037 0.00 0.00 0.00 3.56
3398 3745 7.697691 AGCAAAATATAAGTTTCAGATGTCCG 58.302 34.615 0.00 0.00 0.00 4.79
3416 3763 5.713025 CCTGCACAACATAGTAAGCAAAAT 58.287 37.500 0.00 0.00 0.00 1.82
3421 3768 2.083774 TGCCTGCACAACATAGTAAGC 58.916 47.619 0.00 0.00 0.00 3.09
3521 3868 3.530535 GCAAGGAAGAGATCTGAAGACC 58.469 50.000 0.00 0.00 0.00 3.85
3530 3877 5.043806 AGGGAAATAAAGGCAAGGAAGAGAT 60.044 40.000 0.00 0.00 0.00 2.75
3538 3885 7.417456 GGTGGTTATAAGGGAAATAAAGGCAAG 60.417 40.741 0.00 0.00 0.00 4.01
3543 3890 7.123383 AGTGGGTGGTTATAAGGGAAATAAAG 58.877 38.462 0.00 0.00 0.00 1.85
3546 3893 7.957929 ATAGTGGGTGGTTATAAGGGAAATA 57.042 36.000 0.00 0.00 0.00 1.40
3562 3917 3.532102 AGAACAAGGGAGAATAGTGGGT 58.468 45.455 0.00 0.00 0.00 4.51
3580 3937 1.448985 GCGGTTACATCAGGCAAGAA 58.551 50.000 0.00 0.00 0.00 2.52
3585 3942 3.573491 GCCGCGGTTACATCAGGC 61.573 66.667 28.70 3.63 37.61 4.85
3594 3951 0.676466 TCTGAAATCATGCCGCGGTT 60.676 50.000 28.70 12.09 0.00 4.44
3597 3954 1.532505 CCTTTCTGAAATCATGCCGCG 60.533 52.381 0.00 0.00 0.00 6.46
3600 3957 5.591877 ACATACTCCTTTCTGAAATCATGCC 59.408 40.000 2.88 0.00 0.00 4.40
3601 3958 6.510799 CGACATACTCCTTTCTGAAATCATGC 60.511 42.308 2.88 0.00 0.00 4.06
3658 4015 0.874390 GCCATCAACGAGCTTCAACA 59.126 50.000 0.00 0.00 0.00 3.33
3661 4018 3.631453 AAGCCATCAACGAGCTTCA 57.369 47.368 0.00 0.00 43.12 3.02
3795 4153 6.293955 GCAAACTAACCACACAACTGATACAT 60.294 38.462 0.00 0.00 0.00 2.29
3803 4161 1.472990 GCGCAAACTAACCACACAAC 58.527 50.000 0.30 0.00 0.00 3.32
3821 4179 0.586802 GATTTTCGAGCGGGTATGGC 59.413 55.000 0.00 0.00 0.00 4.40
3875 4234 9.631257 TGACACTGGATCATTATTATTCAATGT 57.369 29.630 0.00 0.00 35.36 2.71
3925 4285 3.063997 CCCACAGATTTAGACGAACATGC 59.936 47.826 0.00 0.00 0.00 4.06
3942 4302 1.614996 ATCACGCAACATTTCCCACA 58.385 45.000 0.00 0.00 0.00 4.17
3943 4303 3.840890 TTATCACGCAACATTTCCCAC 57.159 42.857 0.00 0.00 0.00 4.61
3946 4306 4.266029 CAGCAATTATCACGCAACATTTCC 59.734 41.667 0.00 0.00 0.00 3.13
4021 4383 1.138069 TCAGCAGGTGAGACACGAAAA 59.862 47.619 0.00 0.00 34.83 2.29
4040 4403 0.602905 CGGGACAAGGACACAAGGTC 60.603 60.000 0.00 0.00 46.20 3.85
4041 4404 1.342672 ACGGGACAAGGACACAAGGT 61.343 55.000 0.00 0.00 0.00 3.50
4042 4405 0.602905 GACGGGACAAGGACACAAGG 60.603 60.000 0.00 0.00 0.00 3.61
4043 4406 0.944311 CGACGGGACAAGGACACAAG 60.944 60.000 0.00 0.00 0.00 3.16
4044 4407 1.068417 CGACGGGACAAGGACACAA 59.932 57.895 0.00 0.00 0.00 3.33
4045 4408 0.822944 TACGACGGGACAAGGACACA 60.823 55.000 0.00 0.00 0.00 3.72
4046 4409 0.529378 ATACGACGGGACAAGGACAC 59.471 55.000 0.00 0.00 0.00 3.67
4049 4412 1.475280 CTGAATACGACGGGACAAGGA 59.525 52.381 0.00 0.00 0.00 3.36
4087 4450 8.615878 AACTAACTTATCACAGTACAATTGCA 57.384 30.769 5.05 0.00 0.00 4.08
4271 4641 2.957402 ATGCTTGGGAACTGTTCTCA 57.043 45.000 18.74 18.74 38.68 3.27
4272 4642 3.935828 GAGTATGCTTGGGAACTGTTCTC 59.064 47.826 19.05 16.41 0.00 2.87
4358 4728 6.481954 AATTTTAGACTCGGTCAACACATC 57.518 37.500 6.78 0.00 34.60 3.06
4380 4750 7.553402 TGGTAGCCAACGAATTAATAGCTAAAA 59.447 33.333 0.00 0.00 33.51 1.52
4390 4761 5.712917 AGGAAATTTGGTAGCCAACGAATTA 59.287 36.000 0.00 0.00 43.82 1.40
4412 4783 5.277538 GCGACTTTTCTAGATATTGGCAAGG 60.278 44.000 5.96 0.00 0.00 3.61
4415 4786 4.127171 GGCGACTTTTCTAGATATTGGCA 58.873 43.478 0.00 0.00 0.00 4.92
4475 4846 3.181487 CCAGAACTTGGTTTGGTGTCAAG 60.181 47.826 0.00 0.00 42.41 3.02
4479 4850 1.687996 CCCCAGAACTTGGTTTGGTGT 60.688 52.381 0.00 0.00 46.25 4.16
4482 4853 1.686587 GAACCCCAGAACTTGGTTTGG 59.313 52.381 0.00 0.00 46.25 3.28
4488 4859 4.342092 ACATTTGAAGAACCCCAGAACTTG 59.658 41.667 0.00 0.00 0.00 3.16
4489 4860 4.546674 ACATTTGAAGAACCCCAGAACTT 58.453 39.130 0.00 0.00 0.00 2.66
4490 4861 4.141158 AGACATTTGAAGAACCCCAGAACT 60.141 41.667 0.00 0.00 0.00 3.01
4491 4862 4.022849 CAGACATTTGAAGAACCCCAGAAC 60.023 45.833 0.00 0.00 0.00 3.01
4492 4863 4.144297 CAGACATTTGAAGAACCCCAGAA 58.856 43.478 0.00 0.00 0.00 3.02
4493 4864 3.754965 CAGACATTTGAAGAACCCCAGA 58.245 45.455 0.00 0.00 0.00 3.86
4494 4865 2.229784 GCAGACATTTGAAGAACCCCAG 59.770 50.000 0.00 0.00 0.00 4.45
4495 4866 2.238521 GCAGACATTTGAAGAACCCCA 58.761 47.619 0.00 0.00 0.00 4.96
4496 4867 1.200020 CGCAGACATTTGAAGAACCCC 59.800 52.381 0.00 0.00 0.00 4.95
4497 4868 1.200020 CCGCAGACATTTGAAGAACCC 59.800 52.381 0.00 0.00 0.00 4.11
4498 4869 2.095718 GTCCGCAGACATTTGAAGAACC 60.096 50.000 0.00 0.00 42.99 3.62
4499 4870 3.188895 GTCCGCAGACATTTGAAGAAC 57.811 47.619 0.00 0.00 42.99 3.01
4510 4881 2.430921 CCAGACGTGTCCGCAGAC 60.431 66.667 0.00 0.00 43.83 3.51
4511 4882 3.680786 CCCAGACGTGTCCGCAGA 61.681 66.667 0.00 0.00 37.70 4.26
4532 4903 0.381089 CTAGTCGGATGTCCACGGAC 59.619 60.000 9.38 9.38 44.77 4.79
4533 4904 0.253894 TCTAGTCGGATGTCCACGGA 59.746 55.000 0.00 0.00 35.14 4.69
4534 4905 0.381089 GTCTAGTCGGATGTCCACGG 59.619 60.000 0.00 0.00 35.14 4.94
4535 4906 0.027716 CGTCTAGTCGGATGTCCACG 59.972 60.000 1.12 0.00 35.14 4.94
4536 4907 3.920144 CGTCTAGTCGGATGTCCAC 57.080 57.895 1.12 0.00 35.14 4.02
4545 4916 2.690173 GGATGATGTCCGTCTAGTCG 57.310 55.000 2.16 2.16 37.23 4.18
4555 4926 5.624159 TGAAGGATATGGTTGGATGATGTC 58.376 41.667 0.00 0.00 0.00 3.06
4556 4927 5.651612 TGAAGGATATGGTTGGATGATGT 57.348 39.130 0.00 0.00 0.00 3.06
4557 4928 6.964807 TTTGAAGGATATGGTTGGATGATG 57.035 37.500 0.00 0.00 0.00 3.07
4558 4929 9.305555 CTTATTTGAAGGATATGGTTGGATGAT 57.694 33.333 0.00 0.00 0.00 2.45
4559 4930 7.725397 CCTTATTTGAAGGATATGGTTGGATGA 59.275 37.037 0.00 0.00 39.81 2.92
4560 4931 7.524367 GCCTTATTTGAAGGATATGGTTGGATG 60.524 40.741 7.54 0.00 39.81 3.51
4561 4932 6.494835 GCCTTATTTGAAGGATATGGTTGGAT 59.505 38.462 7.54 0.00 39.81 3.41
4562 4933 5.833131 GCCTTATTTGAAGGATATGGTTGGA 59.167 40.000 7.54 0.00 39.81 3.53
4563 4934 5.278463 CGCCTTATTTGAAGGATATGGTTGG 60.278 44.000 7.54 0.00 39.81 3.77
4564 4935 5.278463 CCGCCTTATTTGAAGGATATGGTTG 60.278 44.000 7.54 0.00 39.81 3.77
4565 4936 4.827284 CCGCCTTATTTGAAGGATATGGTT 59.173 41.667 7.54 0.00 39.81 3.67
4566 4937 4.104102 TCCGCCTTATTTGAAGGATATGGT 59.896 41.667 7.54 0.00 39.81 3.55
4567 4938 4.455877 GTCCGCCTTATTTGAAGGATATGG 59.544 45.833 7.54 3.42 39.81 2.74
4568 4939 5.049405 GTGTCCGCCTTATTTGAAGGATATG 60.049 44.000 7.54 0.00 39.81 1.78
4569 4940 5.063880 GTGTCCGCCTTATTTGAAGGATAT 58.936 41.667 7.54 0.00 39.81 1.63
4570 4941 4.163458 AGTGTCCGCCTTATTTGAAGGATA 59.837 41.667 7.54 0.00 39.81 2.59
4571 4942 3.054361 AGTGTCCGCCTTATTTGAAGGAT 60.054 43.478 7.54 0.00 39.81 3.24
4572 4943 2.304761 AGTGTCCGCCTTATTTGAAGGA 59.695 45.455 7.54 0.00 39.81 3.36
4573 4944 2.711542 AGTGTCCGCCTTATTTGAAGG 58.288 47.619 0.00 0.00 40.39 3.46
4574 4945 5.063564 GTCTAAGTGTCCGCCTTATTTGAAG 59.936 44.000 0.00 0.00 0.00 3.02
4575 4946 4.933400 GTCTAAGTGTCCGCCTTATTTGAA 59.067 41.667 0.00 0.00 0.00 2.69
4576 4947 4.020928 TGTCTAAGTGTCCGCCTTATTTGA 60.021 41.667 0.00 0.00 0.00 2.69
4577 4948 4.250464 TGTCTAAGTGTCCGCCTTATTTG 58.750 43.478 0.00 0.00 0.00 2.32
4578 4949 4.546829 TGTCTAAGTGTCCGCCTTATTT 57.453 40.909 0.00 0.00 0.00 1.40
4579 4950 4.443034 GGATGTCTAAGTGTCCGCCTTATT 60.443 45.833 0.00 0.00 0.00 1.40
4580 4951 3.069729 GGATGTCTAAGTGTCCGCCTTAT 59.930 47.826 0.00 0.00 0.00 1.73
4581 4952 2.429610 GGATGTCTAAGTGTCCGCCTTA 59.570 50.000 0.00 0.00 0.00 2.69
4582 4953 1.207329 GGATGTCTAAGTGTCCGCCTT 59.793 52.381 0.00 0.00 0.00 4.35
4583 4954 0.824759 GGATGTCTAAGTGTCCGCCT 59.175 55.000 0.00 0.00 0.00 5.52
4584 4955 0.535335 TGGATGTCTAAGTGTCCGCC 59.465 55.000 0.00 0.00 33.39 6.13
4585 4956 1.927895 CTGGATGTCTAAGTGTCCGC 58.072 55.000 0.00 0.00 33.39 5.54
4586 4957 1.471676 GGCTGGATGTCTAAGTGTCCG 60.472 57.143 0.00 0.00 33.39 4.79
4587 4958 1.471676 CGGCTGGATGTCTAAGTGTCC 60.472 57.143 0.00 0.00 0.00 4.02
4588 4959 1.471676 CCGGCTGGATGTCTAAGTGTC 60.472 57.143 5.28 0.00 37.49 3.67
4589 4960 0.537188 CCGGCTGGATGTCTAAGTGT 59.463 55.000 5.28 0.00 37.49 3.55
4590 4961 0.179073 CCCGGCTGGATGTCTAAGTG 60.179 60.000 15.09 0.00 37.49 3.16
4591 4962 1.972660 GCCCGGCTGGATGTCTAAGT 61.973 60.000 15.09 0.00 37.49 2.24
4592 4963 1.227674 GCCCGGCTGGATGTCTAAG 60.228 63.158 15.09 0.00 37.49 2.18
4593 4964 2.908015 GCCCGGCTGGATGTCTAA 59.092 61.111 15.09 0.00 37.49 2.10
4594 4965 2.914756 TACGCCCGGCTGGATGTCTA 62.915 60.000 15.09 0.00 37.49 2.59
4596 4967 3.845259 TACGCCCGGCTGGATGTC 61.845 66.667 15.09 0.00 37.49 3.06
4597 4968 4.157120 GTACGCCCGGCTGGATGT 62.157 66.667 15.09 13.50 37.49 3.06
4598 4969 3.460672 ATGTACGCCCGGCTGGATG 62.461 63.158 15.09 7.37 37.49 3.51
4599 4970 3.161450 ATGTACGCCCGGCTGGAT 61.161 61.111 15.09 0.00 37.49 3.41
4600 4971 3.845259 GATGTACGCCCGGCTGGA 61.845 66.667 15.09 0.00 37.49 3.86
4601 4972 3.460672 ATGATGTACGCCCGGCTGG 62.461 63.158 3.88 3.88 37.09 4.85
4602 4973 1.956170 GATGATGTACGCCCGGCTG 60.956 63.158 8.05 3.74 0.00 4.85
4603 4974 2.421739 GATGATGTACGCCCGGCT 59.578 61.111 8.05 0.00 0.00 5.52
4604 4975 2.665185 GGATGATGTACGCCCGGC 60.665 66.667 0.00 0.00 0.00 6.13
4605 4976 0.250295 ATTGGATGATGTACGCCCGG 60.250 55.000 0.00 0.00 0.00 5.73
4606 4977 1.148310 GATTGGATGATGTACGCCCG 58.852 55.000 0.00 0.00 0.00 6.13
4607 4978 1.148310 CGATTGGATGATGTACGCCC 58.852 55.000 0.00 0.00 0.00 6.13
4608 4979 1.865865 ACGATTGGATGATGTACGCC 58.134 50.000 0.00 0.00 0.00 5.68
4609 4980 3.612860 GGATACGATTGGATGATGTACGC 59.387 47.826 0.00 0.00 0.00 4.42
4610 4981 4.082190 AGGGATACGATTGGATGATGTACG 60.082 45.833 0.00 0.00 37.60 3.67
4611 4982 5.407407 AGGGATACGATTGGATGATGTAC 57.593 43.478 0.00 0.00 37.60 2.90
4612 4983 7.547697 TTAAGGGATACGATTGGATGATGTA 57.452 36.000 0.00 0.00 37.60 2.29
4613 4984 4.982241 AAGGGATACGATTGGATGATGT 57.018 40.909 0.00 0.00 37.60 3.06
4614 4985 7.928307 ATTTAAGGGATACGATTGGATGATG 57.072 36.000 0.00 0.00 37.60 3.07
4615 4986 9.672673 CTTATTTAAGGGATACGATTGGATGAT 57.327 33.333 0.00 0.00 37.60 2.45
4632 5003 3.550678 GTCTCGTGTCCGCCTTATTTAAG 59.449 47.826 0.00 0.00 0.00 1.85
4633 5004 3.056678 TGTCTCGTGTCCGCCTTATTTAA 60.057 43.478 0.00 0.00 0.00 1.52
4634 5005 2.492881 TGTCTCGTGTCCGCCTTATTTA 59.507 45.455 0.00 0.00 0.00 1.40
4635 5006 1.274167 TGTCTCGTGTCCGCCTTATTT 59.726 47.619 0.00 0.00 0.00 1.40
4636 5007 0.892755 TGTCTCGTGTCCGCCTTATT 59.107 50.000 0.00 0.00 0.00 1.40
4637 5008 1.067212 GATGTCTCGTGTCCGCCTTAT 59.933 52.381 0.00 0.00 0.00 1.73
4638 5009 0.454600 GATGTCTCGTGTCCGCCTTA 59.545 55.000 0.00 0.00 0.00 2.69
4639 5010 1.215647 GATGTCTCGTGTCCGCCTT 59.784 57.895 0.00 0.00 0.00 4.35
4640 5011 2.885861 GATGTCTCGTGTCCGCCT 59.114 61.111 0.00 0.00 0.00 5.52
4641 5012 2.579787 CGATGTCTCGTGTCCGCC 60.580 66.667 0.00 0.00 40.07 6.13
4642 5013 1.583967 CTCGATGTCTCGTGTCCGC 60.584 63.158 0.00 0.00 45.25 5.54
4643 5014 1.583967 GCTCGATGTCTCGTGTCCG 60.584 63.158 0.00 0.00 45.25 4.79
4644 5015 1.226717 GGCTCGATGTCTCGTGTCC 60.227 63.158 0.00 0.00 45.25 4.02
4645 5016 1.583967 CGGCTCGATGTCTCGTGTC 60.584 63.158 0.00 0.00 45.25 3.67
4646 5017 2.485582 CGGCTCGATGTCTCGTGT 59.514 61.111 0.00 0.00 45.25 4.49
4647 5018 2.278206 CCGGCTCGATGTCTCGTG 60.278 66.667 0.00 0.00 45.25 4.35
4648 5019 3.518998 CCCGGCTCGATGTCTCGT 61.519 66.667 0.00 0.00 45.25 4.18
4649 5020 4.933064 GCCCGGCTCGATGTCTCG 62.933 72.222 0.71 0.00 46.41 4.04
4650 5021 4.933064 CGCCCGGCTCGATGTCTC 62.933 72.222 8.05 0.00 0.00 3.36
4652 5023 3.896133 TACGCCCGGCTCGATGTC 61.896 66.667 19.00 0.00 0.00 3.06
4653 5024 4.203076 GTACGCCCGGCTCGATGT 62.203 66.667 19.00 0.00 0.00 3.06
4654 5025 3.499929 ATGTACGCCCGGCTCGATG 62.500 63.158 19.00 0.00 0.00 3.84
4655 5026 3.208884 GATGTACGCCCGGCTCGAT 62.209 63.158 19.00 4.43 0.00 3.59
4656 5027 3.896133 GATGTACGCCCGGCTCGA 61.896 66.667 19.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.