>input_sequence_29424
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---------ATGGAGAACGAGTTCCAGGTACGGGGATCCCTCCTTCCCAGTCCAACTTCGCGCTCCTGTTTCTGCCCTAG
GATTTAGAGGGGTCGCTGCGTCTAGAAA-GCGGAAGATTCCTTCGTTTCGAGGCGCGATTCGTGAAGGTTTTCCTTGATT
TTGATCTGCTCAGCACGAGGGTTTGGGTAGGAATAGGCGATTGAAGCCTACGCATAGTCGAACGCAG-GAAGAAGGTGGG
ATTGGGATTTCCTCCCTCCAGAGATTGGGGGTCAGCAGATTTTAGGATGGAGACCATACATGTTGGAGTGTACACTTTAG
ATT-----GCTAGATTAGATGTATGCAACTTCAATTAATCGGTTTTCCGGCTCAGATTTGAAACTGGGAGATTTCAGATG
TGTAGCATGAGTTGCTCATCTGTCTTCCATTCCCCTGTTGGAGTATACCAGTACCCACAGATCACAGATGGACATATTGA
GATGGAAAAACCTTCAGTAATGTGAACGTAAAGCTTTTAGCAAACCTGCTTTAAATAGTCATACTTTTTGTAGCATGAAA
TGATCATTGATGGTAATACTCCTTGTTTATTAGAGAGTTCTGCACTATCACTGTCACATACAAATCTTTCCACCCTTCTT
CTGGTGATAATAGTAAGTAAGTAGAAAAGGCCTCTTCAAACTTGCTGGCACTTGGGTGCTTGATGTAGTCTCATACAACA
ACTGTATGAATACTGGTTTAGCCATTTCCCCTTACATCCACTTGTTGTAGAGTTGTTGTTCCAGGGGCAGGATGAAGCTT
GTCAAATGTCAATCTGTCTAGTGCGTTGTAAATTACGTTGATTTTGCAACTAAGTCGGCTGCTGTTACGAGAAATTCCAT
TAT-TGCTGAGGCTGCGGCTACCACTGCATAGTCAGAAGAGAAGTTGTAAATCACATGGTCTGTAAGAATGTAGACCTGT
ACCACACGCCAAATCCTCTGTATCTATCTATGTGTTACCCCT------------CCCC------------CAGCCAAATG
GCAAGGCTATTTTACAGGAGTAAAAATTTATGATCTGTAGACTTCTGCAGCTAGTTATGCTGAAGGAAGATCCATGTAAA
CCATTGTAGA--------TGCTTAAAGCTAATTCATGTTATAATTAGCTTCCTGCATAACTATAATACAATATCTTTTGC
ATGGCCATTGCTTACTTAGGATGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAGGACCAGAGGC
TCCCTCACCACCGTGAGCCCAAAGAGTTCATTCCTCTTGCCAAACTTTCAGGTCTGTGCATTTGCTGCTCAAATCATTTG
CTGCTCAAATCATTTGCTCTAGTAGTATAGTTTTGTTTTTGAACTGTAGTAAAACTAGTGCTGGTAAACCTGCTGGATGC
TAAAAACTGTGCATATTTTCAATGCTCAGAATTAGGTGTTGTAAGCTGGAACCTGAATGCTGATAACTGGGAGAAAGACG
AGAATCTCAAGAAAATCCGTGAGGCCAGGGGATACTCCTATGTGGTTTGTCATTGATC-CCTTTTTGGCTACTTACTGTT
CCGTGTTTCCATTTTGGTTGTCAAAGCTTAAAATGTATGCAAGTAGTAGAAACAATCAAATATGACAGACATGTTCTGTT
TTTCCTCTTGCAGGACATCTGCGACGTATGTCCTGAGAAGTTGCCAAACTATGAGGCCAAGCTGAAGAATTTCTTTGAAG
AGCACTTGCATACTGATGAAGAGATACGCTATTG-TCTTGAGGGCAGTGGTA--C--------GCCTTCTTTATCTTTTT
GGGGGCATTTTGGATGAGAAAGCTATAAACTGTTTTATTTCCAGTAATAATCATGGTGGCATTGTTTTTT----------
--------------------------------------------------------------------AACCTGCTTTAC
CTACTTGTTTTCTT--ATGTTGTCCAGGATACTTTGATGTGAGGGACCAAAACGAACAGTGGATCCGTATAGCAGTTAAG
AAAGGTGGCATGATTGTTTTGCCTGCAGGAATGTATCACCGCTTTACATTGGATAGTGACAACTACATCAA-GGTATC-T
TTAACTTTCTTCTTTTGCTCCCAGCATGAAGTGTTGGTCTCCTTAAAACTTGCATATACTGAATGAATTAAAATGACTGA
ACTCCGTATTCTTTTGTCAAGTTGCCTGTAATTTACTTCTGTGAATGAATTAGTAATAGCTTTCAATAATTTGAATTCGA
CAACAGTACTGTTACTTATCTTTAGTCTCACTGCACATAATTCTAAATACGTAGTTATTTTTTTTTCGTTTTTATTTAGA
ACAATTACTGCTCTGTCTTGTACCATCTTTGTGAAGTTAACTACCAGCCGAG--TCCTTTCATTGATCATAGATTCATAT
CATAAAGAATTAAAGATCTTTTCCTTTTCCATACTCCACGCAATAAGGAACATCATTCT-AATACGGACATCTGAAACTT
ATATTTTGCTTACTATGTTGTGCAGGCAATGCGGCTCTTTGTGGGAGAGCCTATCTGGACGCCATACAACCGTCCCCATG
ACCATCTCCCAGCTAGGTACTTTCCAGGGTCTTCAGATCTCTTCCTTGCCTTT--------ATTTCCCTTATAACCACCC
ACTATTCTCCC--TTGTTCTTGCCTGATGTAACCGCGGCATGATTTCAGAAAGGAGTATGTCGACAAGATTATCAACAGA
GGTGGGAACCAAACTGTTGAAGCTCGTTGA--------------------------------------------------
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>chr4D_1_TraesCS4D01G276400
TATTTTGTGGTGCAAGATGTTCATGTGCGCGATGTCCGTGCAAAATTTGGACATTCGACGAGCTTGTGACAAAAAAAATC
GAATATTTGA-----------GAAATTTTGAAAACATCATTGTTCACACCCAATTTTATC-TTTTTGCTACGAGCACCTC
GAATGTCCAAACACTCCAAAAAATATGGCAAACACCACACATTTGAGCATCTTGCATAAAAAATG-ATCAGATTCTTTTT
ACTTTTTCTACTATTTTATTTTATTTTTACAATTCATCGGTGTAGATAAGCCCGAC--ACCGAATTAAATTAGTGGGAAA
TGACTA---------------------------------------GAGCACGAGGCATCACCGCACCAGTACAA------
--------------------------------------------------------------------------------
--------------------------------GTACAAGGAGGCATGCAGCATGGCGTCCATGCATGCGGCTAGATGACG
TGTACCCTTTGAGCGGTTCATCCTGT------CCAACGTG--------------AAAAAAAATGTCCACGTGCATCGAAC
CGGACAATAGGCCAGCCCACAC-TGCCCATGCCATCACGTTTCATGCAGCGGGAGAATATTTTACGGGGACATGGCAAAT
TTCGCATCCAACCCGCCGGTAGCCGAGAATTACAACCTTGATCAGGGAAAATCCTTGCAAACCGGATATTTTGAAGAAGA
ATCTTGCAGACAA-CCTTTTCTTTTCTTGACAAAAGAACACAATGAAA----------ATCAATCGTTGAAGATGGCTCC
AAGAAGTTTACCACACACACAGACGGAAAAACCGACCAAGACCTAGAACAAGAAGCCGCGTTTCACTTTTCTTCATCGAA
ATAACACCCGAAATAATAAGGCCGAAAATATTGACCGCAGAGAAAAAAATACATAGCAGGGG-CCTACATCGAAATTGAG
CAAATCTCAGTGTCCTTATCCGCAAAAGCCCAGAGTCGCGTTAAGCCAAAGCGGTTCATAAGAAACGCACATCCACCTCC
CCTGTTTCTCCAGCTTCGAGGTTTTCCAGGGAG----AGGAAGGAAGGCAGAGAGAGCAGGGCGCTTGAGACTGCAAGAG
GCCGCCGCCATGGAGAACGAGTTCCAGGTACGGGGATCCCTCCTTCCCAGTCCAACTTCGCGCTCCTGTTTCTGCCCTAG
GATTTAGAGGGGTCGCTGCGTCTAGAAA-GCGGAAGATTCCTTCGTTTCGAGGCGCGATTCGTGAAGGTTTTCCTTGATT
TTGATCTGCTCAGCACGAGGGTTTGGGTAGGAATAGGCGATTGAAGCCTACGCATAGTCGAACGCAG-GAAGAAGGTGGG
ATTGGGATTTCCTCCCTCCAGAGATTGGGGGTCAGCAGATTTTAGGATGGAGACCATACATGTTGGAGTGTACACTTTAG
ATT-----GCTAGATTAGATGTATGCAACTTCAATTAATCGGTTTTCCGGCTCAGATTTGAAACTGGGAGATTTCAGATG
TGTAGCATGAGTTGCTCATCTGTCTTCCATTCCCCTGTTGGAGTATACCAGTACCCACAGATCACAGATGGACATATTGA
GATGGAAAAACCTTCAGTAATGTGAACGTAAAGCTTTTAGCAAACCTGCTTTAAATAGTCATACTTTTTGTAGCATGAAA
TGATCATTGATGGTAATACTCCTTGTTTATTAGAGAGTTCTGCACTATCACTGTCACATACAAATCTTTCCACCCTTCTT
CTGGTGATAATAGTAAGTAAGTAGAAAAGGCCTCTTCAAACTTGCTGGCACTTGGGTGCTTGATGTAGTCTCATACAACA
ACTGTATGAATACTGGTTTAGCCATTTCCCCTTACATCCACTTGTTGTAGAGTTGTTGTTCCAGGGGCAGGATGAAGCTT
GTCAAATGTCAATCTGTCTAGTGCGTTGTAAATTACGTTGATTTTGCAACTAAGTCGGCTGCTGTTACGAGAAATTCCAT
TAT-TGCTGAGGCTGCGGCTACCACTGCATAGTCAGAAGAGAAGTTGTAAATCACATGGTCTGTAAGAATGTAGACCTGT
ACCACACGCCAAATCCTCTGTATCTATCTATGTGTTACCCCT------------CCCC------------CAGCCAAATG
GCAAGGCTATTTTACAGGAGTAAAAATTTATGATCTGTAGACTTCTGCAGCTAGTTATGCTGAAGGAAGATCCATGTAAA
CCATTGTAGA--------TGCTTAAAGCTAATTCATGTTATAATTAGCTTCCTGCATAACTATAATACAATATCTTTTGC
ATGGCCATTGCTTACTTAGGATGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAGGACCAGAGGC
TCCCTCACCACCGTGAGCCCAAAGAGTTCATTCCTCTTGCCAAACTTTCAGGTCTGTGCATTTGCTGCTCAAATCATTTG
CTGCTCAAATCATTTGCTCTAGTAGTATAGTTTTGTTTTTGAACTGTAGTAAAACTAGTGCTGGTAAACCTGCTGGATGC
TAAAAACTGTGCATATTTTCAATGCTCAGAATTAGGTGTTGTAAGCTGGAACCTGAATGCTGATAACTGGGAGAAAGACG
AGAATCTCAAGAAAATCCGTGAGGCCAGGGGATACTCCTATGTGGTTTGTCATTGATC-CCTTTTTGGCTACTTACTGTT
CCGTGTTTCCATTTTGGTTGTCAAAGCTTAAAATGTATGCAAGTAGTAGAAACAATCAAATATGACAGACATGTTCTGTT
TTTCCTCTTGCAGGACATCTGCGACGTATGTCCTGAGAAGTTGCCAAACTATGAGGCCAAGCTGAAGAATTTCTTTGAAG
AGCACTTGCATACTGATGAAGAGATACGCTATTG-TCTTGAGGGCAGTGGTA--C--------GCCTTCTTTATCTTTTT
GGGGGCATTTTGGATGAGAAAGCTATAAACTGTTTTATTTCCAGTAATAATCATGGTGGCATTGTTTTTT----------
--------------------------------------------------------------------AACCTGCTTTAC
CTACTTGTTTTCTT--ATGTTGTCCAGGATACTTTGATGTGAGGGACCAAAACGAACAGTGGATCCGTATAGCAGTTAAG
AAAGGTGGCATGATTGTTTTGCCTGCAGGAATGTATCACCGCTTTACATTGGATAGTGACAACTACATCAA-GGTATC-T
TTAACTTTCTTCTTTTGCTCCCAGCATGAAGTGTTGGTCTCCTTAAAACTTGCATATACTGAATGAATTAAAATGACTGA
ACTCCGTATTCTTTTGTCAAGTTGCCTGTAATTTACTTCTGTGAATGAATTAGTAATAGCTTTCAATAATTTGAATTCGA
CAACAGTACTGTTACTTATCTTTAGTCTCACTGCACATAATTCTAAATACGTAGTTATTTTTTTTTCGTTTTTATTTAGA
ACAATTACTGCTCTGTCTTGTACCATCTTTGTGAAGTTAACTACCAGCCGAG--TCCTTTCATTGATCATAGATTCATAT
CATAAAGAATTAAAGATCTTTTCCTTTTCCATACTCCACGCAATAAGGAACATCATTCT-AATACGGACATCTGAAACTT
ATATTTTGCTTACTATGTTGTGCAGGCAATGCGGCTCTTTGTGGGAGAGCCTATCTGGACGCCATACAACCGTCCCCATG
ACCATCTCCCAGCTAGGTACTTTCCAGGGTCTTCAGATCTCTTCCTTGCCTTT--------ATTTCCCTTATAACCACCC
ACTATTCTCCC--TTGTTCTTGCCTGATGTAACCGCGGCATGATTTCAGAAAGGAGTATGTCGACAAGATTATCAACAGA
GGTGGGAACCAAACTGTTGAAGCTCGTTGATGGCTTCTACAGTGTTCGGCAGCGAGCGGAGTCTTCTGTATGTATCTACA
TATCACACCAAAAG-TTACCGAATAAGATGTGTGTGATTGGCTTTCGCCGTGTACTCGTACCAGCATCGATCATGTATCA
GTTGTGTGGTTAGTTTGCGCCATACCCGCTCGAAAATCTTTGCT-GAAACTTCTTCGCCTGGCGATGATGCCTACATTGA
ATAAT-AATGATCCAGTGTCAGCAACGGTGTAACGAAAACAGATGCATGTTCGTCTAAATCTGTGGGAAATGTTGCGTGA
TAATTGCTGAAAG-CATGCCTGTGTTCATGATCAATCCCC-TACCTGATCTCGCGTTAATACTTTTCGTGTCTCACCTG-
CTGACCTTGTGTCCTTGTCCCGTCGTATTCAGAGGGACTACTAAATCTTTGC-AATTGTACTGTGAT----AAGTTAGTT
TGTCCACACGTCTATAAACACTCTTATTGCTGTGGGC--TGTACGGAGAAGGGAAGCTGCTAGAGCAAATTGTACTGTGA
GTTGTACTATGAGAGTGACTGAACATGTTTCTGTCCATTCCTAGAGCCGACTTCCGGCACTGGTTTCCGGTCCCCTCCGT
TGAGAACAGTTCCCAAGCATACTCCCATGAACTATCATCATCATGTCTCTTGAGGCTGTTTGGTTTGATGCCAATATTTG
GCATGCCGATGTGTTGACCGAGTCTAAAAT-TTTAGCTATTAATTCGTTGGCTACCAAATTTCCTTGCCAATATCTAGAA
AAGTCGCCAACTTTTACCAATTGTTAACTTGGCAAAATGCCAAATCTTGACACCAAACCAAGTTCTGGGGTTCTTCAAAT
GTCTGCGGACACGTCTGGGCGTGTCCGTGGACATCCGACTAGACGGACATCATCCAACCATATCCTTCAAATAAGGCGGA
CACTTAGACATCCAGCCGGGCGTACATCATCCAATCGTATCCCTTAAATAAGGCGGACACGAGACATCGAGCCGGGCGTA
CATC
>chr4B_1
TATTCTGTGGTGCAAGATGTTCATGTGTGTGATGCGCGTGCAAAATTTGGACATTCAAGGACCTTGTGGCAAAAAAAAGT
TATTTTTGA----ATGTCTGGGAAATTTTGAAAACATCATTGTTCACACCCAATTTTATGTTTTTTGCCACCAGCACTTC
GAATGTCCAAACACTCCAAAAATATGCAAAAACATCACACATTAGAGCATCTTGCATAAAAAAATCATCAGATTTTTTTT
ACCTTTTCTGCTATTTTATTTTATTTTTACTATTCACTGGTGTAGATAAGCCCGAC--ACCGAATTGAATTACTGAGGAA
TGA------------------------------------CTACATGAGCACGAGGCACCACCGCACCAGTACAAGTACAA
GGAGGCATGCTTGTTGGTTAGCAAACTCCCCAAAGGAGATTAGTATTATTATTTCAAACGATTGTAAGGCCCTGATTGAT
TAAATGATATGCTTTCCCCCGCAAAAGAAAAAGTACAAGGAGGCATGCAGCATGGCGTCCATGCATGCTGCTAGATGACG
TGTA-CCCTTGAGCGGTTCAGCCTGT------TCATCCTCTCCAAAGGGAAATAAAAAAAAATGTCCACGTGCATCGAAC
CGGACAATAGGCCAGCC--CAC-TGCCCATGCCATCACGTTTCATGCAGCGGGGGAATATTTTACGGGGACATCGCAAAT
TTCGCATCTAACCCACCGGTAGCCGAGAATTACAACCTTGAACAGGGAAAATCCTTGCAAGCC--ATATTTTGAAGAAGA
ATCATGCAGACAA-CCTTTTCTTTTCTTGACAAAAAAACCACAAATCCACAATGAATCATCAATCGTTGAAGATGGCTAC
ATGAAGTTTACTACACACACAGACAGAAAAACCGACCAGGACCTAGAACAAGAAGCCGTGTTTCACTTTTCTTCATCGGA
ACAACACCCGAAATAA---GGCCGAAAATATTGACCTCGGAGAAAAAAAATACATGGCAGTGTCCTACATCGAAATTGAG
CAAACCTCAGTGTCCTTATCGGTAAAAGCTTCGAGTCGCGTTAATCCAAAGCGGTTCATAAGAAACGCACATCCGCCTCC
CCTGTTTCTCCAGCTTCGAGGTATTCCAACCAGA-------------GCAGAGAGAGCAGGGCGCGAGAGGCTGCAAGCG
GCCGCCGCCATGGAGAACGAGTTCCAGGTACGGGGATCCCTCCTTCCCAGTCCTATTTCGAGCTCGTGTTTCGGCCCTAG
GATTTAGAGGGGTCGCTGCGTCTAGAAA-GAGAAAGATTCCTTCGTTTCGGGGCGCGATTCGTCAAGGTTTTCCTTGATT
TTGATCTGCTCGGTACAAGGGTTTGGGTAGGAATAGGCGATTGAAGTGTATGTATAGTCGAACGCAA-GAAGAA---GGG
ACTGGGATTTCCTCCCACCAGAGATTGGGGGTTAGCAGATTTTAGGATGGAGACCATACATGTGAAT-------CTTCAG
ATTACTAGACTAGATTAGATGTATGCT-CTTCAATTAATCGATTTTCCGGCCCAGATTTGAAACTTGGAGA-TTCAGATG
TGTAGCATGAGTTGCTCATCAGTCTTCC-TTCCCCTGTTGGAGTATACCAGTACCCACAC-------ATGAACATATTGA
AATGGAAAAACCTTCAGTGATGTGAACGTAAAGCTTTTAGCAAAGCTGCTTTAAATAGTCATA-----------------
--------------------------------GAGAGTTCTGCACCAGCACTGTAACATACAAGTCTTTCCACCCGAGAT
AC-----TAGTAGTAAGTAGGGAGG-AAGGCCTCTTCAAACTTGCTGGCACTTGGGTGTTTGATGTAGTCTCATACAAGA
ACTGTATGAATACTGGTTTAGCCATTTCCCATTACATCCACTTGTTGTAGAGTTGTTGTTCCAGGTGCAGGATGAAGCTT
GTCAATTGTCAATCTGTCTAGTGCGTTGTAAATTACATTGATTTTGCAACCAAGTCGGCTGCTGTTACGAGAAATTCCAT
TAT-TGCTGAGGCTGCGACTACCACTGCATAGACAGAAGAGAAGTAGTAAATCACATGGTCTGTAAGAACATAGACCTGT
ACCACACGCCAAATCCTCTGTATCTATCTATGTGTTACCCCT------------CCCCCAACCCCACCCCCACCCAAAAC
GCAAGGCTGTTTTACAGGAGTAAAAACTTATGATCTGTAGACTTCTGCAGCTAGGTGTACTGAAGGAAGGTCCATGTAAA
CCATTGTACTCATACAGTTGTTTACAGCTAATTCATGTTATAATTAACTTCCTGCATAATTATAATACAATATCT-----
----------CTTACTTAGGATGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAGGAGGACCAGAGGC
TTCCTCATCACCGTGAGCCCAAAGAGTTCATTCCTCTTGCCAAACTTTCAGGTCTGTGCATTTGCTGCTCAAATCA----
------------CTTACTCTTGTCTG----------TTTTGAACTGTAGTCAAA-TAGTGCTGGTAAACCTGCTGGATGC
TAAAAATTGTGCATATTATAAATGCCCAGAATTGGGTGTTGTAAGCTGGAACCTGAATGCTGATGACTGGGAGAAAGACG
AGAATCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTATGTGGTTTGTCATCGATC-C-TTTTTGGCTACTTACTGTT
GTGTGTTCCCATTTTGATTGGC-AAGCGTAAAACGTGTGCAAGTAGTAGAAACAAACATGTGTGACAGACATATTCTGTT
TTCCCTCTTGCAGGACATTTGCGACGTATGTCCAGAGAAGTTGCCAAACTATGAGGCCAAGCTGAAGAACTTCTTTGAAG
AGCACTTGCATACTGATGAAGAGATACGCTATTG-TCTCGAGGGCAGTGGTAGGC--------GCCTTCTTTATCTTTTT
TGAGGCATTTTGGATGAGAAAGCTATAAACTGTTTTATTTCCAGTAATAATCATGGTGACATTCCTTTTTTAACGCGATT
TACCTATTTGTTTTCTTATATTGTCCAGGATACTTTGATGTGAGGGATTATGGTGACATTCCTTTTTTAACGCGATTTAC
CTATTTGTTTTCTT--ATATTGTCCAGGATACTTTGATGTGAGGGACCAAAACGAACAGTGGATCCGTATAGCAGTTAAG
AAAGGTGGCATGATTGTTTTGCCTGCAGGAATGTATCACCGCTTTACATTGGATAGTGACAACTACATCAA-GGTATCTT
TTAACTTTCTGCTTTTGCTCCCACCATGAAGTGTTGGTCTCCTTAAGACTTGTATATACTGAATGAATTAAAATGACTGA
ACTCTGTATTAC---------TTGCGTGTAATTTACTTTTGTGAATGAATCAGTGATAGCTTTCAATAATTTCAATTCGA
CAACAGT---GTTACTTATCTTTAGTCTCACTGCACGTAATTCGAAAC----AGTACTTATCTTTTTAGTTTTTACAACA
ACATTTACTGCTGTGTCTTGTACCATCTCTGTGAAGTTAACTACCAGCCGAGAGTCCTTTCATTGATCATATATTCATAT
CATAAAGA--------TCTTTTCCTTTTCCGTACTCCACCCAATAAGGAACATCATTCTAAATATGGACCTCTGAAACTT
ATGTTTTTCTTACTATGTTGTGCAGGCAATGCGGCTCTTTGTGGGAGAGCCTATCTGGACGCCATACAATCGTCCCCATG
ACCATCTCCCAGCCAGGTACTTTCCAGAGTCTTCAGTTCTCTTCTCTGCGTTCATTACTCCATTTCCCTTATAATCTCCC
ACTATTCTCCCCCTTGCTCTTACCGGATGTGACTGCA-CATGATTTCAGAAAGGAGTACGTCGACAAGATTATCAACAGA
GGTGGGAACCAAACCGTCGAAGCTCGTTGACGGCTTCT--AGTGTTCGGCAGCGAGCGT-GTCTTCTGTATGTATCTACA
TATCACACCAAAAG-TTACTGAATAAGA--TGTGTGATTGGCTTTCGCCGTGTGCTCGTACCAGCATCGATCCTGTATCA
CTTGTGTGGTTAGTTTGCAACATACCCGTTCGAAAATCTTTGCT-GAAACTTCTTCGCCTGGCGATGATGCCTGTATTGA
ATAAT-AATGATCCAGTGTCAGCAATGGTGTGACGAAAACATATTCATGTTCGTCTAAATCCCTGAGAAATGCTGCGTAA
TAATTGCTGAAAGCCATGCCTGTGTTCATGATCAATCCCC-TACCTGATCTCGCGTTAATACGTTTCGTGTCTCACCTG-
C--------TGACCTTGTCCCGTCGTATTCAGAGGGACTACTAAATCTTGGC-AATTGTACTGTGAT----AAGTTAGTT
TGTCCACACGTCTATAAACACTCTTATTGCTGTGGGC--TGTACGGAGAAGGGAAGCTGCTAGAGCAAATTGTACTGTGA
GTTGTACTATGAGAGTGACTGAACATGTTTCTGTCCATTCCTAGAGCCGACTTCCGGCACTGGTTTCCGGTCCCCTCCGT
CAAGAACAGCTGCCAAATGTACTCCAATGAACTATCATCATCATGTCTCTTGAGGCTGTTTGGTTTGGTGCCAATATTTG
GCATGTCAATGTGTTGACCAAGTCTAAAAA-CTTAGCTATCAATTCGTTGGCTGCCAAATTTTCTGGCCAATCTCTAGAA
AAGTCGCCAACTTCTACCAATTGTTGGCTTGCCAAAATGCCAAATATTGGCATCAAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>chr4A_4
TTTGA--TGTTGCAAGATGTTCATGTGCGTGATGCCCGTGCCAAA---GGACATCCCAGGAGCCCGTTGCAAAAAAAAGA
AGATATTTTTCGGATGTCTGGGAAATTTTGAAAACATCACTATTCATACCCAAAATTATCTTTTTTGCCACAAGCACCTC
GAATGTCCAAACACTCCAAAACT---CAAAAACATCACACATTTGAGCATCTTGCATAAAAAACAATACAG-TTTCTTTT
ATTTTTTCTACTATTTT----TAATTTTAGTGTTCACCGGATGTATATAAGTCCCAGAACCGAATTAAATTATGATGGAG
AAATGACTCCTTCCCCCTGCTGTCCCGCGCGAGACACGCCTACATGAGCACAGAGGCACCG-------------------
--------------------------------------------------------------------------------
--------------------------------GTACAAGGAGGCATGCAGCATGGCGTCCATGCATGCGGCTAGATGACG
CGTA-CCCTTGAGCGGTTCAGCCTGCTCGTCCTCTTCCTCTCCAAGGGAAAC----AAAAAATGTCCACGTGCATCGAAC
CGGACAATAGGCCAGCC--CACCTGCCGATGCCATCACGTTTCATGCAGCGGGGGAATATTTTACGGGGACACGGCAAAT
TTCGCATCTAACCCACCGGTAGCCGAGAATTACAACCTCGAACAGGGAAAACCCTTGCAAGCCGGATATTTCGAAGAAGA
ATCATGCAGACAAACCTTTTCATCTTTTGACAAAAGAACCACAATGAAGCATCA-------AATCGTTGAAGATGGCCAC
AAGAAGTTTACTATACACACA----GAAAAATCGACCAAGGCCCAGAACAAGAAGCCGTGTTTCACTTTTCTTCATCGGA
ACAACACCCGAAATAA---TGCCGAAAATATTGACCGTAGAGAAAAATACACGGT--AGGGG-CCTACATCGAAATTGAG
CAAATCTCAGTGCACTTATCCGCAAAAGCCCCGAGTCGCGTTAATCCAAAGCGGTTCATAAGAAACGCACACCCACCTCC
CCTGTTTCTCCAGCTTCGAGGTTTTCCGGCGTGAGGAAGGAAGGAAGGCAGCGAGAGCAGGGCGCGGGAGACTGCGAGAG
GCTGCCGCCATGGAGAACGAGTTCCAGGTACGGGGG--------TCCCAGTCCTATTTCGAGCTCGCGTTTCTGCCCTAG
GATTTAGAGGGGTCGCTGCGTCTAGAAAAGAGGAAGATTCCTTCGTTTCGGGGCGCGATTCGTCAAGGTTTTCCTTGATT
TTGATCGGCTCGGTACAAGGGTTTGGGTAGGAATAGGCGATTGAAGCGTATGTATAGTCGAGCGAAAAGAAGAT---GGG
ACTGGGATTTCCTCATTCCAGAGATTGGGGGTCAGCAGATTTTAGGATGGAGACCATACATGTGAAT-------CTTCAG
ATT-----ACTAGATTAGATGTGTGCT-CTTCAATTAATCTATTTTCCGGGTTAGATTCAAAACTGGGAGA-TTCAGATG
TGTAGCATGAGTTGCTCATCAGTCTTCC-TTCCCCTGTTGGAGTATACCAGTACCCACAGATCACGGATGGACATATTGA
GATGGAAAAACCTTCAGTAATGTGAACGTAAAGCTTTTAGTAGAGCTGCTTTAAATAGTCATACTTCTCATGGCATGAAA
TTGGCATTGATGTTATTAGTCCTTGTTTATTAGAGAGTTCTGCACTAGCACTTTCACATACAAATATTTCCACCCTTCTT
CTGGTGATAATAGTTAGTAAGTAGAAAAGGCCTCTTCAAACTTGCTGGCACTTGGGTGCTTGATGTAGTCTCATACAACA
ACTGTATGAATACTGGTTTAGCCATTTCCCCTTACATCCACTTGTTGTAGAGTTGTTGTTCCAGGGGCTGGATGAAGGTT
GTCAAATGTCAATCTGTCTATTGCGTTGTAAATTATGTTGATTTTGCAACCAAGTAGGCTGTTGTTACGAGAAATTCCAT
TAAATGCTGAGGCTGCGGCTACCA-----------GAAGAGAAGCAGTAAATCACATAATCTGTAAGAATGTAGACCTGT
ACCACACGCCAAATCCTCTGTATCTATCTATGTGTTATCCCTCCCCCACCCTCACCCC------------CACCCAAATG
GCAAGGCTGTTTTACAGGAGTAAAAATTTATGATCTGTAGACATCTGCAGCTAGGTGTACTGAAGGAAGGTCCATGTAAA
CCATTGTAGA--------TTTTTACAGCTAATTCATGTTATAATTAACTTCCTGCATAATTATAATACAATATC-TTTGC
ATGGCCATTGCTTACTTAGGATGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAGGATCAGAGGC
TTCCTCACCACCGTGAGCCCAAAGAGTTCATTCCTCTTGCCAAACTTTCAGGTCTGTGCATTCGCTGCTCAAATAA----
------------TTTGCTCTAGTAGTATAGTTT-GTTTTTGAACTGTAGTAAAACTAGTGCTGGTAAACCTGCTGGATGC
TAAAAATTGTGCATATTTTCAATGCTCAGAATTAGGTGTTGTAAGCTGGAACCTAAATGCTGATAACTGGGAGAAAGACG
AGAATCTCAAGAAAATCCGTGAGGCCAGGGGATACTCCTATGTGGTTTGTCATTGATCCC-TTTTTGGCTACTTACTGTT
CTGTGTTTCCATTTTGGTTGTCAAAGCTTAAAATGTATGCAAGTAGTAGAAGCAATCAAATGTGACAGACATGTTCTGTT
TTTCCTCTTGCAGGACATCTGCGACGTATGTCCTGAGAAATTGCCAAACTATGAGGCCAAGCTGAAGAATTTCTTTGAAG
AGCACTTGCATACTGATGAGGAGATACGCTATTG-TCTTGAGGGCAGTGGTA--C--------GCCTTCTTTATCTTTTT
TGGGGCATTTTGGATGAGAAAGCTATAAAGTGTTTTATTTCCAGTAATAATCATGGTGGCATTGTTTTTTT---------
-------------------------------------------------------------------TAACCTGCTTTAC
CTATTTGTTTTCTT--ATCTTGTCCAGGATACTTTGATGTGAGGGACCAAAATGAACAGTGGATCCGTATAGCAGTTAAG
AAAGGTGGCATGATTGTTTTGCCTGCAGGAATGTATCACCGCTTTACATTGGATAGTGACAACTACATCAA-GGTAT--T
TTAACTTTCTGCTTTTGCTCCCACCATGAAGTGTTGGTCTCCTTAAAACTTGCATATACTAAATGAACTAAAATGACTGA
AGTCCTTATTCTTTTGTCAAGTTGCGTGTAATTTACTTTTGTGAATGAATTGGTAATAGATTTCAATAATTTGAATTCGA
CAACAGT---GTTACTTATCTTTAGTCTCACTGCACGTAATTCTAAATAC---GTAGTTTTCTTTTTAGTTTTTACAACA
ACATTTACTGCTGTGTCTTGTACCATCTCTGTGAAGTTAACTACCAGCG--GAGTCCTTTCATTGATCATATATTCATAT
CATAAAGA--------TCTTTCCCTTTTCCGTACTCCACCCAATAAGGAACATCATTCTAA-TATGGACCTCTGAAACTT
ATGTTTTTCTTACTATGTTGTGCAGGCAATGCGGCTCTTTGTGGGAGAGCCTATCTGGACGCCTTACAATCGTCCCCATG
ACCATCTCCCAGCTAGGTACTTTCCAGAGTCTTCACTTCTCTTCTTTGCGTTCATTACTCCATTTCCCTTATAACCTCCC
ACTATTCTCCC--TTGCTCTTACCTGATGTGACTGCA-CATGATTTCAGAAAGGAGTATGTCGACAAGATTATCAACAGA
GGTGGGAACCAAACCGTCGAAGCTCGTTGATGGCTCCTACAGTGTTCGGCAGCGAGT-GAGTCTTCTGTATGTATCTACA
TATCACACCAAAAGGTTACCGAATAAGA--TGTGTGATTGGCTTTCGCCGTGTACCCATACCAGCATCGATCCTGTATCA
CTTGTGTGGT-AGTTTGCACAAAACCTGCTTGAAAATGTTTCATGGAAACTTCTTTGCCTGGCGATGATGCCTGTATTGA
ATAATAAATGATTCAGTGTCAACAACGGCGTAATGAAAACGGATTCATGTCCATCCAAATCCCTGAGAAATGTTGCGCAA
TTATTGCTGAAAGCTATACTTGTGTTCTTGATCAATCCCCCTACCAGATCTTGCGTTAATACCTTTCCTGCTTCACATGG
C--------TGACCTTGTCCCGTCGTATTCAGAGAGACGACTAAATCTTGGCAAATTGTACTGTGATTGCCAAGTTTGTT
TGTCCGCAATTCTGTGAACACTCGTACTGTTACTGTGGTTGTACGGAGAAGGGAAGCTGCTAGAGCAAATTGTACTGTCA
GTTGTACTATGAGTATGACTGAACATGTTCCTGTCCATTTCTAGAGCCGACTTCCGGCACTGGTTTCCGGTCCCCTCCGT
CAAGAACAGTTCCCAAGCATACTCCCATGAACTATCATCATCATGTCTCTTGAGGCTGTTTGGTTTGGTGCCAATATTTG
GCATGCCAGTGTGTTGACCAAGTCTAAAAAATTTAGCTATCAATTCGTCGGCTACCAAATTTTCTCGCCAATCTCTAGAA
AAGTCGCCAACTTTTACCAATTTTTGGCTTGCCAAAATGGCAAAT-----------------------------------
--------------------------------------------------------------------------------
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----
>chr6A_2555
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----GTTTCCATTTTGATTGTCAAAGCATAAAACGTATGCAAGTAGTAGAAGCAATCAAGCGTGACAGACCTGTTTTGTT
TTTCCTCTAGCAGGACATCCGCGACGTATATCCCAAGAAGTTGCCAAACTACAAGGCCAAGCTGAAAAATTTCTTTGAAG
AGCACTTGTGTACTGACGAAGAGATACACTTTTTTTCTTGAGGGCAGTGGTAGACTGGTAGGTGCCTTCTTTATCCTTTT
TTGGCATTTTAA-ATGAGAAAGCCATAAACCGTTATATTTCCAGTGATAATCACGG------------------------
-------------------------------------------------------------------TAACATGCTTTAC
CAAATTG-TTTTTTTAATGTTGTCAAGGTTACTTTGATGCGAGGGACCAAAATGAAGAGTGGATCTATATAGCAGTGAAG
GAAGGGGGCATGATTGTTTTGCCTGCAGGAATGTATCATGGATTCACGTTGGACAATGACAACTACATCAAAGGTATC-T
TTTAATTTCTTCTTCAGCCCCCACCATG-AGTGTTGGCCTCCTTAAAACTTGTATATACTAAATGAATAAAACTGAGTGG
ACTATGTATTCTTTTC------TGAATGTAATTTACTTTTGTGAGTGAATTAGTGATAACTT------------------
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----
>chr5B_2557
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------TTCCATTTTGATTGTCAAAGCATAAAACATTTGCAAGTAGTAGAAGCAATCAAGCGTGACAGACCTGTTTTGTT
TTTCCTCTAGCAGGACATCCGCGACGTATATCCCAAGAAGTTGCCAAACTACAAGGCCAAGCTGAAAAATTTCTTTGAAG
AGCACTTGCATACTGACGAAGAGATACGCTATTT-TCTTGAGGGCAGTGGTAGACTGGTAGGTGCCTTCTTTATCCTTTT
TTGGCATTCTAA-ATGAGAAAGCCATAAACCGTTATATTTCCAGTGATAATCACGG------------------------
-------------------------------------------------------------------TAACATGCTTTAC
CAAATTGTTTTTTTTAATGTTGTCAAGGATACTTTGATGCGAGGGACCAAAATGAAGAGTGGATCTGTATAGCAGTGAAG
GAAGGGGGCATGATTGTTTTGCCTGCAGGAATGTATCACGGATTCACATTGGATAATGACAACTACATCAAAGGTATA-T
TTTAATTTCTTCTTCTGCCCCCACCATG-AGTGTTGGCCTCCTTAAAACTTGTATATACTAAATGAATAGAACTGAGTGG
ACTATGTATTCTTTTC------TGCATGTAATTTACTTTTGTGAGTGAATTAGTGATAACTTCAAT--------------
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----
>SNPs
----S------------------------S----S---------------------S-S---------S---------SS
S-------SS----------------------------------------------------------S--S--------
----------------------SSSSSSS-----S----------------------------SS---------S-----
------------------------------S-----S-----------------------------------S--S-S--
---SS----------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S--S------------S-----------S--S-S-S----------------------------------------
-----------------SS----------------------------------S--------------------------
--------S-----S--------------------------S------------------S-------------------
---S-----------------------------------SSS-SSS--------------------------------S-
-----------S------------S---------------------------------S-------------------S-
-S--------------SSS------------------------------S--SSS-S-----------------------
-------------------------------S------------S-----------------------------------
-----------------------------S-----------------------------------SS-------------
-----------------------------------------------------S-S----S----S--------------
------------------------------S-------------------S------------S----------------
-----------S-S--S------------------------------S--S-S-------------S-------SSS---
-S-------------------------------------------------------------SSSSSSSSSSS---S--
--------S-----------------SS-------------S-----------------------------S--------
--------------------S-------S------------------------------------S--------------
--------------------------------------------S---------------------S-SS-S--------
-SSS--------S--S--S----------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------S------------S----------------------------------
------------------------------------------------------------------------S-------
--------S---------------------------------------------S-S-S----------S----------
--------------------S---S---------------------S------------S--------------------
--------------------------------------------------------------------------------
-S--------------------------------------------------------------------------SSSS
SSSSSSSSSSSS---------------------S----------------------------------------------
------S-------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-S-----------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
-------------------------S------------S-----------------------------------------
-------SSS--------------------------S-------------SS---SS----S----SSS----SSSS-S-
---S--------S---------------S------------------------------------------S--------
--------SSSSSSSS--------------S--------S------------------------S----S----------
--S----S-------------------------------------------------------------S----------
---------------------------S--------S-------S----S--S-----------------------S---
----------------S----S--------S--S--SS------------------------------------------
--------------S--S--------------------------------------------------------------
----------------------------SS------------------------------------------S-------
S-----------------S------------------------------------------------------SS-----
--------------------------------------------S----------------SS--S------------S-
--------------------------------------------------------------S-----------------
-SSSSSSSS--S-------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
SS-----------------------------------------------------------------S------------
-------S-----------S---------S----------S---------------------S--S------S-------
-------------------------SS----S-------------S---S--S----SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_596
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------GAGCGGTTCATCCTGTCCAA--------------------------------------------
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----
>reverse_2051
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--------------------------------------------------TAAGTCGGCTGCTGTTACGA----------
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----
>forward_1436
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--------------------------------------------------------AGTCGAACGCAGGAAGAAGG----
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----
>reverse_3041
--------------------------------------------------------------------------------
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GGGGGCATTTTGGATGAGAA------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_1437
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------GTCGAACGCAGGAAGAAGGT---
--------------------------------------------------------------------------------
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----
>reverse_3384
--------------------------------------------------------------------------------
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-----------------------GCATGAAGTGTTGGTCTCCT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_2482
--------------------------------------------------------------------------------
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--------------------------------------------------------------GTGAAGAGGACCAGAGGC
TC------------------------------------------------------------------------------
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----
>reverse_4409
--------------------------------------------------------------------------------
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--------GTGTCCTTGTCCCGTCGTAT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
