Multiple sequence alignment - TraesCS4D01G273900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G273900 chr4D 100.000 3010 0 0 1 3010 444049285 444046276 0.000000e+00 5559.0
1 TraesCS4D01G273900 chr4D 92.754 69 4 1 2692 2760 444046514 444046447 6.870000e-17 99.0
2 TraesCS4D01G273900 chr4D 92.754 69 4 1 2772 2839 444046594 444046526 6.870000e-17 99.0
3 TraesCS4D01G273900 chr4A 94.033 1676 79 11 753 2409 24022395 24024068 0.000000e+00 2521.0
4 TraesCS4D01G273900 chr4A 91.263 847 60 6 1048 1881 24030831 24031676 0.000000e+00 1142.0
5 TraesCS4D01G273900 chr4A 86.957 437 32 4 1845 2281 24031676 24032087 4.540000e-128 468.0
6 TraesCS4D01G273900 chr4A 86.517 356 34 5 1 352 24016501 24016846 2.190000e-101 379.0
7 TraesCS4D01G273900 chr4A 85.981 107 6 1 893 999 24030734 24030831 4.100000e-19 106.0
8 TraesCS4D01G273900 chr4A 85.484 62 7 2 343 402 24016914 24016853 2.510000e-06 63.9
9 TraesCS4D01G273900 chr4A 100.000 29 0 0 259 287 4284402 4284374 2.000000e-03 54.7
10 TraesCS4D01G273900 chr4B 95.075 1604 63 9 784 2376 553610335 553608737 0.000000e+00 2510.0
11 TraesCS4D01G273900 chr4B 82.920 685 78 21 1 668 553611076 553610414 5.590000e-162 580.0
12 TraesCS4D01G273900 chr5D 81.548 168 22 6 542 708 399247066 399247225 2.440000e-26 130.0
13 TraesCS4D01G273900 chr5D 80.451 133 22 4 269 399 404503193 404503063 6.870000e-17 99.0
14 TraesCS4D01G273900 chr2B 86.364 88 12 0 309 396 762850881 762850968 2.470000e-16 97.1
15 TraesCS4D01G273900 chr2A 84.444 90 14 0 307 396 753262779 753262868 4.130000e-14 89.8
16 TraesCS4D01G273900 chr6D 86.364 66 9 0 331 396 452848162 452848097 4.160000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G273900 chr4D 444046276 444049285 3009 True 1919 5559 95.169333 1 3010 3 chr4D.!!$R1 3009
1 TraesCS4D01G273900 chr4A 24022395 24024068 1673 False 2521 2521 94.033000 753 2409 1 chr4A.!!$F2 1656
2 TraesCS4D01G273900 chr4A 24030734 24032087 1353 False 572 1142 88.067000 893 2281 3 chr4A.!!$F3 1388
3 TraesCS4D01G273900 chr4B 553608737 553611076 2339 True 1545 2510 88.997500 1 2376 2 chr4B.!!$R1 2375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 252 0.099436 GCGGCTATTTGGCTCACAAG 59.901 55.0 0.0 0.0 40.82 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 2258 0.893447 ACGCGGGTAAAGCTAGAAGT 59.107 50.0 12.47 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.032960 ACCATGACTTGTATGCTTCCAA 57.967 40.909 0.00 0.00 0.00 3.53
61 62 7.099266 TGTATGCTTCCAAGATACCAATTTG 57.901 36.000 0.00 0.00 0.00 2.32
64 65 6.271488 TGCTTCCAAGATACCAATTTGAAG 57.729 37.500 0.00 0.00 0.00 3.02
135 137 6.651225 CCTACAATCCCTAGAAATTTCGGATC 59.349 42.308 20.04 0.00 32.05 3.36
157 159 8.073768 GGATCAAAATTCGAAGTACACAAAGAA 58.926 33.333 3.35 0.00 0.00 2.52
209 219 8.453320 TCAATAAAGACAAATGCATGAGTAGTG 58.547 33.333 0.00 0.00 0.00 2.74
242 252 0.099436 GCGGCTATTTGGCTCACAAG 59.901 55.000 0.00 0.00 40.82 3.16
257 267 3.610911 TCACAAGCTCATCTACTCTCGA 58.389 45.455 0.00 0.00 0.00 4.04
258 268 3.375610 TCACAAGCTCATCTACTCTCGAC 59.624 47.826 0.00 0.00 0.00 4.20
259 269 3.127721 CACAAGCTCATCTACTCTCGACA 59.872 47.826 0.00 0.00 0.00 4.35
274 284 6.455647 ACTCTCGACATGAACAGTAAATTCA 58.544 36.000 0.00 0.00 40.25 2.57
277 287 8.148807 TCTCGACATGAACAGTAAATTCAAAA 57.851 30.769 0.00 0.00 39.43 2.44
332 345 2.187707 GCATGAATGATGTTTCGGTGC 58.812 47.619 0.00 0.00 34.75 5.01
337 350 1.078709 ATGATGTTTCGGTGCGTGAG 58.921 50.000 0.00 0.00 0.00 3.51
355 368 3.004315 GTGAGGTCCGCTTCAAATTTCAA 59.996 43.478 0.00 0.00 32.39 2.69
360 373 4.622740 GGTCCGCTTCAAATTTCAATTCAG 59.377 41.667 0.00 0.00 0.00 3.02
361 374 5.222631 GTCCGCTTCAAATTTCAATTCAGT 58.777 37.500 0.00 0.00 0.00 3.41
362 375 5.691754 GTCCGCTTCAAATTTCAATTCAGTT 59.308 36.000 0.00 0.00 0.00 3.16
364 377 5.107375 CCGCTTCAAATTTCAATTCAGTTGG 60.107 40.000 0.00 0.00 38.39 3.77
371 384 9.076781 TCAAATTTCAATTCAGTTGGACATCTA 57.923 29.630 0.00 0.00 38.39 1.98
377 390 6.818644 TCAATTCAGTTGGACATCTAAGTAGC 59.181 38.462 0.00 0.00 38.39 3.58
380 393 5.265191 TCAGTTGGACATCTAAGTAGCTCT 58.735 41.667 0.00 0.00 0.00 4.09
383 396 5.717178 AGTTGGACATCTAAGTAGCTCTCAA 59.283 40.000 0.00 0.00 0.00 3.02
388 401 6.874134 GGACATCTAAGTAGCTCTCAACAAAA 59.126 38.462 0.00 0.00 0.00 2.44
414 427 3.569194 AACATGTACTGTTGTGACCCA 57.431 42.857 0.00 0.00 46.37 4.51
415 428 3.569194 ACATGTACTGTTGTGACCCAA 57.431 42.857 0.00 0.00 32.90 4.12
416 429 4.098914 ACATGTACTGTTGTGACCCAAT 57.901 40.909 0.00 0.00 32.90 3.16
417 430 4.469657 ACATGTACTGTTGTGACCCAATT 58.530 39.130 0.00 0.00 32.90 2.32
418 431 4.892934 ACATGTACTGTTGTGACCCAATTT 59.107 37.500 0.00 0.00 32.90 1.82
419 432 4.909696 TGTACTGTTGTGACCCAATTTG 57.090 40.909 0.00 0.00 35.02 2.32
420 433 4.274147 TGTACTGTTGTGACCCAATTTGT 58.726 39.130 0.00 0.00 35.02 2.83
421 434 5.437946 TGTACTGTTGTGACCCAATTTGTA 58.562 37.500 0.00 0.00 35.02 2.41
422 435 5.529430 TGTACTGTTGTGACCCAATTTGTAG 59.471 40.000 0.00 0.00 35.02 2.74
432 445 5.091261 ACCCAATTTGTAGAGCTACTCAG 57.909 43.478 8.91 0.00 37.00 3.35
437 450 6.820656 CCAATTTGTAGAGCTACTCAGATGTT 59.179 38.462 8.91 0.00 37.00 2.71
445 458 9.587772 GTAGAGCTACTCAGATGTTCAAATAAA 57.412 33.333 0.50 0.00 32.06 1.40
446 459 8.485976 AGAGCTACTCAGATGTTCAAATAAAC 57.514 34.615 0.00 0.00 32.06 2.01
456 469 9.277565 CAGATGTTCAAATAAACTGAAATACCG 57.722 33.333 0.00 0.00 34.68 4.02
519 538 5.782893 TTTGAATTTACTGTTCACTGGGG 57.217 39.130 0.00 0.00 35.47 4.96
535 555 2.060980 GGGCAGATGAGTCCGGACT 61.061 63.158 36.89 36.89 45.84 3.85
553 573 5.932303 CCGGACTCATAAATGAATATTCGGT 59.068 40.000 10.80 0.00 36.18 4.69
554 574 6.128553 CCGGACTCATAAATGAATATTCGGTG 60.129 42.308 10.80 5.31 36.18 4.94
568 588 8.262227 TGAATATTCGGTGAAAACCTACACTAT 58.738 33.333 10.80 0.00 37.22 2.12
612 634 8.715191 TTTTGTTTCTTTATGTGTGCTTTGAT 57.285 26.923 0.00 0.00 0.00 2.57
616 638 8.602328 TGTTTCTTTATGTGTGCTTTGATTTTG 58.398 29.630 0.00 0.00 0.00 2.44
617 639 8.816144 GTTTCTTTATGTGTGCTTTGATTTTGA 58.184 29.630 0.00 0.00 0.00 2.69
618 640 9.545105 TTTCTTTATGTGTGCTTTGATTTTGAT 57.455 25.926 0.00 0.00 0.00 2.57
619 641 8.746922 TCTTTATGTGTGCTTTGATTTTGATC 57.253 30.769 0.00 0.00 0.00 2.92
620 642 8.579006 TCTTTATGTGTGCTTTGATTTTGATCT 58.421 29.630 0.00 0.00 0.00 2.75
621 643 8.523523 TTTATGTGTGCTTTGATTTTGATCTG 57.476 30.769 0.00 0.00 0.00 2.90
622 644 5.771153 TGTGTGCTTTGATTTTGATCTGA 57.229 34.783 0.00 0.00 0.00 3.27
668 691 3.896888 TGCCTTGTGAACATCCTCAATTT 59.103 39.130 0.00 0.00 0.00 1.82
669 692 4.344679 TGCCTTGTGAACATCCTCAATTTT 59.655 37.500 0.00 0.00 0.00 1.82
670 693 5.163322 TGCCTTGTGAACATCCTCAATTTTT 60.163 36.000 0.00 0.00 0.00 1.94
712 735 9.325150 ACATTTATGTTTGACGTTTTAAGATCG 57.675 29.630 0.00 0.00 37.90 3.69
713 736 8.785101 CATTTATGTTTGACGTTTTAAGATCGG 58.215 33.333 0.00 0.00 0.00 4.18
714 737 5.934935 ATGTTTGACGTTTTAAGATCGGT 57.065 34.783 0.00 0.00 0.00 4.69
715 738 8.531622 TTATGTTTGACGTTTTAAGATCGGTA 57.468 30.769 0.00 0.00 0.00 4.02
716 739 7.605410 ATGTTTGACGTTTTAAGATCGGTAT 57.395 32.000 0.00 0.00 0.00 2.73
717 740 7.052565 TGTTTGACGTTTTAAGATCGGTATC 57.947 36.000 0.00 0.00 0.00 2.24
718 741 6.645827 TGTTTGACGTTTTAAGATCGGTATCA 59.354 34.615 0.00 0.00 34.28 2.15
719 742 7.332430 TGTTTGACGTTTTAAGATCGGTATCAT 59.668 33.333 0.00 0.00 34.28 2.45
720 743 6.822073 TGACGTTTTAAGATCGGTATCATG 57.178 37.500 0.00 0.00 34.28 3.07
721 744 6.566141 TGACGTTTTAAGATCGGTATCATGA 58.434 36.000 0.00 0.00 34.28 3.07
722 745 6.695713 TGACGTTTTAAGATCGGTATCATGAG 59.304 38.462 0.09 0.00 34.28 2.90
723 746 6.802608 ACGTTTTAAGATCGGTATCATGAGA 58.197 36.000 0.09 0.00 34.28 3.27
724 747 6.918569 ACGTTTTAAGATCGGTATCATGAGAG 59.081 38.462 0.09 0.00 34.28 3.20
725 748 6.129062 CGTTTTAAGATCGGTATCATGAGAGC 60.129 42.308 9.47 9.47 34.28 4.09
726 749 6.405278 TTTAAGATCGGTATCATGAGAGCA 57.595 37.500 18.68 7.14 34.28 4.26
727 750 6.596309 TTAAGATCGGTATCATGAGAGCAT 57.404 37.500 18.68 11.17 34.28 3.79
728 751 7.703058 TTAAGATCGGTATCATGAGAGCATA 57.297 36.000 18.68 7.13 34.28 3.14
729 752 6.788598 AAGATCGGTATCATGAGAGCATAT 57.211 37.500 18.68 11.33 34.28 1.78
730 753 7.888250 AAGATCGGTATCATGAGAGCATATA 57.112 36.000 18.68 2.43 34.28 0.86
731 754 7.888250 AGATCGGTATCATGAGAGCATATAA 57.112 36.000 18.68 0.18 34.28 0.98
732 755 8.298729 AGATCGGTATCATGAGAGCATATAAA 57.701 34.615 18.68 0.00 34.28 1.40
733 756 8.753133 AGATCGGTATCATGAGAGCATATAAAA 58.247 33.333 18.68 0.00 34.28 1.52
734 757 8.939201 ATCGGTATCATGAGAGCATATAAAAG 57.061 34.615 18.68 1.07 32.27 2.27
735 758 7.323420 TCGGTATCATGAGAGCATATAAAAGG 58.677 38.462 18.68 0.41 32.27 3.11
736 759 7.039011 TCGGTATCATGAGAGCATATAAAAGGT 60.039 37.037 18.68 0.00 32.27 3.50
737 760 8.251026 CGGTATCATGAGAGCATATAAAAGGTA 58.749 37.037 18.68 0.00 32.27 3.08
738 761 9.593134 GGTATCATGAGAGCATATAAAAGGTAG 57.407 37.037 14.37 0.00 32.27 3.18
745 768 9.143155 TGAGAGCATATAAAAGGTAGTATCACA 57.857 33.333 0.00 0.00 0.00 3.58
746 769 9.413048 GAGAGCATATAAAAGGTAGTATCACAC 57.587 37.037 0.00 0.00 0.00 3.82
747 770 8.082852 AGAGCATATAAAAGGTAGTATCACACG 58.917 37.037 0.00 0.00 0.00 4.49
748 771 7.948357 AGCATATAAAAGGTAGTATCACACGA 58.052 34.615 0.00 0.00 0.00 4.35
749 772 8.585881 AGCATATAAAAGGTAGTATCACACGAT 58.414 33.333 0.00 0.00 35.50 3.73
750 773 9.850628 GCATATAAAAGGTAGTATCACACGATA 57.149 33.333 0.00 0.00 32.73 2.92
862 920 2.750350 CAACCCTCCACCGCTTCT 59.250 61.111 0.00 0.00 0.00 2.85
1536 1594 0.560240 GCGACGACACGAAGATAACG 59.440 55.000 0.00 0.00 35.09 3.18
2102 2217 0.313987 GTTTAGCGTGCCCTTTTGCT 59.686 50.000 0.00 0.00 41.32 3.91
2108 2223 0.940991 CGTGCCCTTTTGCTTGAAGC 60.941 55.000 10.84 10.84 42.82 3.86
2143 2258 2.105006 ACCAGCGTCTAGTTCTCGTA 57.895 50.000 0.00 0.00 0.00 3.43
2233 2351 2.413453 GCTTCTAGCTTGGTTGAAGTCG 59.587 50.000 19.08 3.08 38.45 4.18
2385 2509 6.389830 AAAAAGTGCAAATTTCCATTTCCC 57.610 33.333 0.00 0.00 30.03 3.97
2387 2511 4.980339 AGTGCAAATTTCCATTTCCCTT 57.020 36.364 0.00 0.00 29.41 3.95
2388 2512 6.432403 AAGTGCAAATTTCCATTTCCCTTA 57.568 33.333 0.00 0.00 29.41 2.69
2389 2513 6.625532 AGTGCAAATTTCCATTTCCCTTAT 57.374 33.333 0.00 0.00 29.41 1.73
2395 2519 7.280876 GCAAATTTCCATTTCCCTTATTTCCTC 59.719 37.037 0.00 0.00 29.41 3.71
2404 2528 5.086104 TCCCTTATTTCCTCGAGAACAAG 57.914 43.478 15.71 5.96 32.95 3.16
2409 2533 6.651225 CCTTATTTCCTCGAGAACAAGAAAGT 59.349 38.462 15.71 7.41 32.95 2.66
2410 2534 5.931441 ATTTCCTCGAGAACAAGAAAGTG 57.069 39.130 15.71 0.00 32.95 3.16
2411 2535 2.755650 TCCTCGAGAACAAGAAAGTGC 58.244 47.619 15.71 0.00 0.00 4.40
2412 2536 2.102420 TCCTCGAGAACAAGAAAGTGCA 59.898 45.455 15.71 0.00 0.00 4.57
2413 2537 2.872245 CCTCGAGAACAAGAAAGTGCAA 59.128 45.455 15.71 0.00 0.00 4.08
2414 2538 3.312421 CCTCGAGAACAAGAAAGTGCAAA 59.688 43.478 15.71 0.00 0.00 3.68
2415 2539 4.023707 CCTCGAGAACAAGAAAGTGCAAAT 60.024 41.667 15.71 0.00 0.00 2.32
2416 2540 5.499139 TCGAGAACAAGAAAGTGCAAATT 57.501 34.783 0.00 0.00 0.00 1.82
2417 2541 5.273170 TCGAGAACAAGAAAGTGCAAATTG 58.727 37.500 0.00 0.00 0.00 2.32
2418 2542 4.085415 CGAGAACAAGAAAGTGCAAATTGC 60.085 41.667 11.58 11.58 45.29 3.56
2441 2565 8.599055 TGCAAAATAAGAAAATGTTACATGCA 57.401 26.923 0.00 0.00 0.00 3.96
2442 2566 9.217278 TGCAAAATAAGAAAATGTTACATGCAT 57.783 25.926 0.00 0.00 0.00 3.96
2455 2579 8.737168 ATGTTACATGCATACAAATAGTGAGT 57.263 30.769 0.00 0.00 0.00 3.41
2456 2580 7.973601 TGTTACATGCATACAAATAGTGAGTG 58.026 34.615 0.00 0.00 0.00 3.51
2457 2581 7.606073 TGTTACATGCATACAAATAGTGAGTGT 59.394 33.333 0.00 0.00 0.00 3.55
2458 2582 9.093970 GTTACATGCATACAAATAGTGAGTGTA 57.906 33.333 0.00 0.00 32.58 2.90
2459 2583 9.660180 TTACATGCATACAAATAGTGAGTGTAA 57.340 29.630 0.00 0.00 31.85 2.41
2460 2584 8.737168 ACATGCATACAAATAGTGAGTGTAAT 57.263 30.769 0.00 0.00 31.85 1.89
2461 2585 9.177608 ACATGCATACAAATAGTGAGTGTAATT 57.822 29.630 0.00 0.00 31.85 1.40
2462 2586 9.442033 CATGCATACAAATAGTGAGTGTAATTG 57.558 33.333 0.00 0.00 31.85 2.32
2463 2587 7.471721 TGCATACAAATAGTGAGTGTAATTGC 58.528 34.615 0.00 0.00 35.65 3.56
2464 2588 7.120432 TGCATACAAATAGTGAGTGTAATTGCA 59.880 33.333 7.05 7.05 39.55 4.08
2465 2589 7.641411 GCATACAAATAGTGAGTGTAATTGCAG 59.359 37.037 0.00 0.00 35.38 4.41
2466 2590 8.668353 CATACAAATAGTGAGTGTAATTGCAGT 58.332 33.333 3.26 3.26 31.85 4.40
2467 2591 6.902341 ACAAATAGTGAGTGTAATTGCAGTG 58.098 36.000 8.74 0.00 0.00 3.66
2468 2592 6.486657 ACAAATAGTGAGTGTAATTGCAGTGT 59.513 34.615 8.74 0.00 0.00 3.55
2469 2593 7.659799 ACAAATAGTGAGTGTAATTGCAGTGTA 59.340 33.333 8.74 0.00 0.00 2.90
2470 2594 8.668353 CAAATAGTGAGTGTAATTGCAGTGTAT 58.332 33.333 8.74 1.10 0.00 2.29
2471 2595 8.792830 AATAGTGAGTGTAATTGCAGTGTATT 57.207 30.769 8.74 6.52 0.00 1.89
2472 2596 9.884636 AATAGTGAGTGTAATTGCAGTGTATTA 57.115 29.630 8.74 0.37 0.00 0.98
2475 2599 9.314321 AGTGAGTGTAATTGCAGTGTATTATAC 57.686 33.333 8.74 13.84 32.04 1.47
2476 2600 8.266682 GTGAGTGTAATTGCAGTGTATTATACG 58.733 37.037 8.74 0.00 35.07 3.06
2477 2601 8.192110 TGAGTGTAATTGCAGTGTATTATACGA 58.808 33.333 8.74 8.23 35.07 3.43
2478 2602 8.348983 AGTGTAATTGCAGTGTATTATACGAC 57.651 34.615 2.77 0.00 35.07 4.34
2479 2603 7.977293 AGTGTAATTGCAGTGTATTATACGACA 59.023 33.333 2.77 5.60 35.07 4.35
2480 2604 8.597227 GTGTAATTGCAGTGTATTATACGACAA 58.403 33.333 0.00 0.87 0.00 3.18
2481 2605 9.152595 TGTAATTGCAGTGTATTATACGACAAA 57.847 29.630 0.00 0.00 0.00 2.83
2482 2606 9.976255 GTAATTGCAGTGTATTATACGACAAAA 57.024 29.630 0.00 0.00 0.00 2.44
2503 2627 5.722021 AAAACGGGAAATGTGATTAAGCT 57.278 34.783 0.00 0.00 0.00 3.74
2504 2628 4.701956 AACGGGAAATGTGATTAAGCTG 57.298 40.909 0.00 0.00 0.00 4.24
2505 2629 3.686016 ACGGGAAATGTGATTAAGCTGT 58.314 40.909 0.00 0.00 0.00 4.40
2506 2630 4.079253 ACGGGAAATGTGATTAAGCTGTT 58.921 39.130 0.00 0.00 0.00 3.16
2507 2631 4.156008 ACGGGAAATGTGATTAAGCTGTTC 59.844 41.667 0.00 0.00 0.00 3.18
2508 2632 4.155826 CGGGAAATGTGATTAAGCTGTTCA 59.844 41.667 0.00 0.00 0.00 3.18
2509 2633 5.335583 CGGGAAATGTGATTAAGCTGTTCAA 60.336 40.000 0.00 0.00 0.00 2.69
2510 2634 6.625740 CGGGAAATGTGATTAAGCTGTTCAAT 60.626 38.462 0.00 0.00 0.00 2.57
2511 2635 7.415095 CGGGAAATGTGATTAAGCTGTTCAATA 60.415 37.037 0.00 0.00 0.00 1.90
2512 2636 7.702348 GGGAAATGTGATTAAGCTGTTCAATAC 59.298 37.037 0.00 0.00 0.00 1.89
2513 2637 7.429340 GGAAATGTGATTAAGCTGTTCAATACG 59.571 37.037 0.00 0.00 0.00 3.06
2514 2638 5.794687 TGTGATTAAGCTGTTCAATACGG 57.205 39.130 0.00 0.00 36.13 4.02
2515 2639 4.634004 TGTGATTAAGCTGTTCAATACGGG 59.366 41.667 0.00 0.00 33.46 5.28
2516 2640 4.634443 GTGATTAAGCTGTTCAATACGGGT 59.366 41.667 0.00 0.00 45.55 5.28
2520 2644 2.699954 AGCTGTTCAATACGGGTTCTG 58.300 47.619 0.00 0.00 40.93 3.02
2521 2645 2.301870 AGCTGTTCAATACGGGTTCTGA 59.698 45.455 0.00 0.00 40.93 3.27
2522 2646 3.055094 AGCTGTTCAATACGGGTTCTGAT 60.055 43.478 0.00 0.00 40.93 2.90
2523 2647 3.689649 GCTGTTCAATACGGGTTCTGATT 59.310 43.478 0.00 0.00 33.46 2.57
2524 2648 4.873827 GCTGTTCAATACGGGTTCTGATTA 59.126 41.667 0.00 0.00 33.46 1.75
2525 2649 5.220605 GCTGTTCAATACGGGTTCTGATTAC 60.221 44.000 0.00 0.00 33.46 1.89
2526 2650 4.865925 TGTTCAATACGGGTTCTGATTACG 59.134 41.667 0.00 0.00 0.00 3.18
2527 2651 4.049546 TCAATACGGGTTCTGATTACGG 57.950 45.455 0.00 0.00 0.00 4.02
2528 2652 3.448301 TCAATACGGGTTCTGATTACGGT 59.552 43.478 0.00 0.00 0.00 4.83
2529 2653 2.945447 TACGGGTTCTGATTACGGTG 57.055 50.000 0.00 0.00 0.00 4.94
2530 2654 0.971386 ACGGGTTCTGATTACGGTGT 59.029 50.000 0.00 0.00 0.00 4.16
2531 2655 1.345415 ACGGGTTCTGATTACGGTGTT 59.655 47.619 0.00 0.00 0.00 3.32
2532 2656 2.224354 ACGGGTTCTGATTACGGTGTTT 60.224 45.455 0.00 0.00 0.00 2.83
2533 2657 3.006752 ACGGGTTCTGATTACGGTGTTTA 59.993 43.478 0.00 0.00 0.00 2.01
2534 2658 3.615496 CGGGTTCTGATTACGGTGTTTAG 59.385 47.826 0.00 0.00 0.00 1.85
2535 2659 4.572909 GGGTTCTGATTACGGTGTTTAGT 58.427 43.478 0.00 0.00 0.00 2.24
2536 2660 4.999311 GGGTTCTGATTACGGTGTTTAGTT 59.001 41.667 0.00 0.00 0.00 2.24
2537 2661 5.471116 GGGTTCTGATTACGGTGTTTAGTTT 59.529 40.000 0.00 0.00 0.00 2.66
2538 2662 6.368213 GGTTCTGATTACGGTGTTTAGTTTG 58.632 40.000 0.00 0.00 0.00 2.93
2539 2663 5.600908 TCTGATTACGGTGTTTAGTTTGC 57.399 39.130 0.00 0.00 0.00 3.68
2540 2664 5.302360 TCTGATTACGGTGTTTAGTTTGCT 58.698 37.500 0.00 0.00 0.00 3.91
2541 2665 5.407387 TCTGATTACGGTGTTTAGTTTGCTC 59.593 40.000 0.00 0.00 0.00 4.26
2542 2666 4.453136 TGATTACGGTGTTTAGTTTGCTCC 59.547 41.667 0.00 0.00 0.00 4.70
2543 2667 2.632987 ACGGTGTTTAGTTTGCTCCT 57.367 45.000 0.00 0.00 0.00 3.69
2544 2668 2.927028 ACGGTGTTTAGTTTGCTCCTT 58.073 42.857 0.00 0.00 0.00 3.36
2545 2669 3.284617 ACGGTGTTTAGTTTGCTCCTTT 58.715 40.909 0.00 0.00 0.00 3.11
2546 2670 4.453751 ACGGTGTTTAGTTTGCTCCTTTA 58.546 39.130 0.00 0.00 0.00 1.85
2547 2671 4.883006 ACGGTGTTTAGTTTGCTCCTTTAA 59.117 37.500 0.00 0.00 0.00 1.52
2548 2672 5.533528 ACGGTGTTTAGTTTGCTCCTTTAAT 59.466 36.000 0.00 0.00 0.00 1.40
2549 2673 6.040054 ACGGTGTTTAGTTTGCTCCTTTAATT 59.960 34.615 0.00 0.00 0.00 1.40
2550 2674 7.229106 ACGGTGTTTAGTTTGCTCCTTTAATTA 59.771 33.333 0.00 0.00 0.00 1.40
2551 2675 7.749126 CGGTGTTTAGTTTGCTCCTTTAATTAG 59.251 37.037 0.00 0.00 0.00 1.73
2552 2676 7.541091 GGTGTTTAGTTTGCTCCTTTAATTAGC 59.459 37.037 0.00 0.00 36.77 3.09
2553 2677 8.297426 GTGTTTAGTTTGCTCCTTTAATTAGCT 58.703 33.333 0.00 0.00 37.16 3.32
2554 2678 8.296713 TGTTTAGTTTGCTCCTTTAATTAGCTG 58.703 33.333 0.00 0.00 37.16 4.24
2555 2679 5.316327 AGTTTGCTCCTTTAATTAGCTGC 57.684 39.130 0.00 0.00 37.16 5.25
2556 2680 5.012893 AGTTTGCTCCTTTAATTAGCTGCT 58.987 37.500 7.57 7.57 37.16 4.24
2557 2681 4.970662 TTGCTCCTTTAATTAGCTGCTG 57.029 40.909 13.43 0.00 37.16 4.41
2558 2682 2.684881 TGCTCCTTTAATTAGCTGCTGC 59.315 45.455 13.43 7.62 37.16 5.25
2559 2683 2.286654 GCTCCTTTAATTAGCTGCTGCG 60.287 50.000 13.43 0.00 45.42 5.18
2560 2684 2.288666 TCCTTTAATTAGCTGCTGCGG 58.711 47.619 13.43 3.55 45.42 5.69
2561 2685 1.334869 CCTTTAATTAGCTGCTGCGGG 59.665 52.381 13.43 0.00 45.42 6.13
2562 2686 1.334869 CTTTAATTAGCTGCTGCGGGG 59.665 52.381 13.43 0.00 45.42 5.73
2563 2687 1.101049 TTAATTAGCTGCTGCGGGGC 61.101 55.000 13.43 7.25 45.42 5.80
2564 2688 1.983119 TAATTAGCTGCTGCGGGGCT 61.983 55.000 13.43 14.08 45.42 5.19
2565 2689 4.783621 TTAGCTGCTGCGGGGCTG 62.784 66.667 13.43 0.00 45.42 4.85
2585 2709 3.386768 GCAGTTGGCGATAATCCTAGA 57.613 47.619 0.00 0.00 0.00 2.43
2586 2710 3.931578 GCAGTTGGCGATAATCCTAGAT 58.068 45.455 0.00 0.00 0.00 1.98
2587 2711 3.929610 GCAGTTGGCGATAATCCTAGATC 59.070 47.826 0.00 0.00 0.00 2.75
2588 2712 4.499183 CAGTTGGCGATAATCCTAGATCC 58.501 47.826 0.00 0.00 0.00 3.36
2589 2713 3.193691 AGTTGGCGATAATCCTAGATCCG 59.806 47.826 0.00 0.00 0.00 4.18
2590 2714 3.081710 TGGCGATAATCCTAGATCCGA 57.918 47.619 0.00 0.00 0.00 4.55
2591 2715 3.017442 TGGCGATAATCCTAGATCCGAG 58.983 50.000 0.00 0.00 0.00 4.63
2592 2716 2.359531 GGCGATAATCCTAGATCCGAGG 59.640 54.545 5.09 5.09 35.17 4.63
2593 2717 2.223618 GCGATAATCCTAGATCCGAGGC 60.224 54.545 6.42 0.00 33.73 4.70
2594 2718 3.017442 CGATAATCCTAGATCCGAGGCA 58.983 50.000 6.42 0.00 33.73 4.75
2595 2719 3.444034 CGATAATCCTAGATCCGAGGCAA 59.556 47.826 6.42 0.00 33.73 4.52
2596 2720 4.675671 CGATAATCCTAGATCCGAGGCAAC 60.676 50.000 6.42 0.00 33.73 4.17
2610 2734 1.087501 GGCAACTCGATCCAAAGACC 58.912 55.000 0.00 0.00 0.00 3.85
2611 2735 1.087501 GCAACTCGATCCAAAGACCC 58.912 55.000 0.00 0.00 0.00 4.46
2612 2736 1.359848 CAACTCGATCCAAAGACCCG 58.640 55.000 0.00 0.00 0.00 5.28
2613 2737 0.391263 AACTCGATCCAAAGACCCGC 60.391 55.000 0.00 0.00 0.00 6.13
2614 2738 1.258445 ACTCGATCCAAAGACCCGCT 61.258 55.000 0.00 0.00 0.00 5.52
2615 2739 0.744874 CTCGATCCAAAGACCCGCTA 59.255 55.000 0.00 0.00 0.00 4.26
2616 2740 0.744874 TCGATCCAAAGACCCGCTAG 59.255 55.000 0.00 0.00 0.00 3.42
2617 2741 0.249489 CGATCCAAAGACCCGCTAGG 60.249 60.000 0.00 0.00 43.78 3.02
2689 2813 2.603473 CCCCCAGTGTCGTCTCCA 60.603 66.667 0.00 0.00 0.00 3.86
2690 2814 1.990060 CCCCCAGTGTCGTCTCCAT 60.990 63.158 0.00 0.00 0.00 3.41
2691 2815 1.219124 CCCCAGTGTCGTCTCCATG 59.781 63.158 0.00 0.00 0.00 3.66
2692 2816 1.257750 CCCCAGTGTCGTCTCCATGA 61.258 60.000 0.00 0.00 0.00 3.07
2693 2817 0.174389 CCCAGTGTCGTCTCCATGAG 59.826 60.000 0.00 0.00 0.00 2.90
2694 2818 0.459237 CCAGTGTCGTCTCCATGAGC 60.459 60.000 0.00 0.00 0.00 4.26
2695 2819 0.799917 CAGTGTCGTCTCCATGAGCG 60.800 60.000 0.00 0.00 33.22 5.03
2696 2820 1.517257 GTGTCGTCTCCATGAGCGG 60.517 63.158 0.00 0.00 32.96 5.52
2697 2821 2.105128 GTCGTCTCCATGAGCGGG 59.895 66.667 0.00 0.00 32.96 6.13
2698 2822 3.838271 TCGTCTCCATGAGCGGGC 61.838 66.667 0.00 0.00 32.96 6.13
2699 2823 4.899239 CGTCTCCATGAGCGGGCC 62.899 72.222 0.00 0.00 0.00 5.80
2700 2824 4.899239 GTCTCCATGAGCGGGCCG 62.899 72.222 24.35 24.35 0.00 6.13
2722 2846 4.699522 GTGCACCCTGACCCGTCC 62.700 72.222 5.22 0.00 0.00 4.79
2728 2852 3.528370 CCTGACCCGTCCCGCTAG 61.528 72.222 0.00 0.00 0.00 3.42
2729 2853 4.208686 CTGACCCGTCCCGCTAGC 62.209 72.222 4.06 4.06 0.00 3.42
2735 2859 3.597728 CGTCCCGCTAGCCCTCTC 61.598 72.222 9.66 0.00 0.00 3.20
2736 2860 3.228017 GTCCCGCTAGCCCTCTCC 61.228 72.222 9.66 0.00 0.00 3.71
2737 2861 4.541648 TCCCGCTAGCCCTCTCCC 62.542 72.222 9.66 0.00 0.00 4.30
2740 2864 4.548513 CGCTAGCCCTCTCCCCCT 62.549 72.222 9.66 0.00 0.00 4.79
2741 2865 2.040359 GCTAGCCCTCTCCCCCTT 60.040 66.667 2.29 0.00 0.00 3.95
2742 2866 2.144078 GCTAGCCCTCTCCCCCTTC 61.144 68.421 2.29 0.00 0.00 3.46
2743 2867 1.460497 CTAGCCCTCTCCCCCTTCC 60.460 68.421 0.00 0.00 0.00 3.46
2744 2868 2.974435 CTAGCCCTCTCCCCCTTCCC 62.974 70.000 0.00 0.00 0.00 3.97
2745 2869 4.760220 GCCCTCTCCCCCTTCCCA 62.760 72.222 0.00 0.00 0.00 4.37
2746 2870 2.692741 CCCTCTCCCCCTTCCCAC 60.693 72.222 0.00 0.00 0.00 4.61
2747 2871 2.124996 CCTCTCCCCCTTCCCACA 59.875 66.667 0.00 0.00 0.00 4.17
2748 2872 2.301738 CCTCTCCCCCTTCCCACAC 61.302 68.421 0.00 0.00 0.00 3.82
2749 2873 1.538876 CTCTCCCCCTTCCCACACA 60.539 63.158 0.00 0.00 0.00 3.72
2750 2874 1.842381 CTCTCCCCCTTCCCACACAC 61.842 65.000 0.00 0.00 0.00 3.82
2751 2875 2.856988 TCCCCCTTCCCACACACC 60.857 66.667 0.00 0.00 0.00 4.16
2752 2876 3.979497 CCCCCTTCCCACACACCC 61.979 72.222 0.00 0.00 0.00 4.61
2753 2877 2.858974 CCCCTTCCCACACACCCT 60.859 66.667 0.00 0.00 0.00 4.34
2754 2878 2.757077 CCCTTCCCACACACCCTC 59.243 66.667 0.00 0.00 0.00 4.30
2755 2879 2.757077 CCTTCCCACACACCCTCC 59.243 66.667 0.00 0.00 0.00 4.30
2756 2880 2.757077 CTTCCCACACACCCTCCC 59.243 66.667 0.00 0.00 0.00 4.30
2757 2881 1.847968 CTTCCCACACACCCTCCCT 60.848 63.158 0.00 0.00 0.00 4.20
2758 2882 1.386772 TTCCCACACACCCTCCCTT 60.387 57.895 0.00 0.00 0.00 3.95
2759 2883 1.423794 TTCCCACACACCCTCCCTTC 61.424 60.000 0.00 0.00 0.00 3.46
2760 2884 2.347490 CCACACACCCTCCCTTCG 59.653 66.667 0.00 0.00 0.00 3.79
2761 2885 2.347490 CACACACCCTCCCTTCGG 59.653 66.667 0.00 0.00 0.00 4.30
2802 2926 3.626924 GTGCACCCTGACCCGTCT 61.627 66.667 5.22 0.00 0.00 4.18
2803 2927 3.311110 TGCACCCTGACCCGTCTC 61.311 66.667 0.00 0.00 0.00 3.36
2804 2928 4.436998 GCACCCTGACCCGTCTCG 62.437 72.222 0.00 0.00 0.00 4.04
2805 2929 4.436998 CACCCTGACCCGTCTCGC 62.437 72.222 0.00 0.00 0.00 5.03
2806 2930 4.680537 ACCCTGACCCGTCTCGCT 62.681 66.667 0.00 0.00 0.00 4.93
2807 2931 2.439701 CCCTGACCCGTCTCGCTA 60.440 66.667 0.00 0.00 0.00 4.26
2808 2932 2.482333 CCCTGACCCGTCTCGCTAG 61.482 68.421 0.00 0.00 0.00 3.42
2809 2933 2.409651 CTGACCCGTCTCGCTAGC 59.590 66.667 4.06 4.06 0.00 3.42
2810 2934 3.127352 CTGACCCGTCTCGCTAGCC 62.127 68.421 9.66 0.00 0.00 3.93
2811 2935 3.902086 GACCCGTCTCGCTAGCCC 61.902 72.222 9.66 0.00 0.00 5.19
2812 2936 4.444081 ACCCGTCTCGCTAGCCCT 62.444 66.667 9.66 0.00 0.00 5.19
2813 2937 3.597728 CCCGTCTCGCTAGCCCTC 61.598 72.222 9.66 0.00 0.00 4.30
2814 2938 2.517402 CCGTCTCGCTAGCCCTCT 60.517 66.667 9.66 0.00 0.00 3.69
2815 2939 2.548295 CCGTCTCGCTAGCCCTCTC 61.548 68.421 9.66 0.00 0.00 3.20
2816 2940 2.548295 CGTCTCGCTAGCCCTCTCC 61.548 68.421 9.66 0.00 0.00 3.71
2817 2941 1.152839 GTCTCGCTAGCCCTCTCCT 60.153 63.158 9.66 0.00 0.00 3.69
2818 2942 1.149627 TCTCGCTAGCCCTCTCCTC 59.850 63.158 9.66 0.00 0.00 3.71
2819 2943 1.150536 CTCGCTAGCCCTCTCCTCT 59.849 63.158 9.66 0.00 0.00 3.69
2820 2944 0.467290 CTCGCTAGCCCTCTCCTCTT 60.467 60.000 9.66 0.00 0.00 2.85
2821 2945 0.033011 TCGCTAGCCCTCTCCTCTTT 60.033 55.000 9.66 0.00 0.00 2.52
2822 2946 0.387565 CGCTAGCCCTCTCCTCTTTC 59.612 60.000 9.66 0.00 0.00 2.62
2823 2947 0.756294 GCTAGCCCTCTCCTCTTTCC 59.244 60.000 2.29 0.00 0.00 3.13
2824 2948 1.419381 CTAGCCCTCTCCTCTTTCCC 58.581 60.000 0.00 0.00 0.00 3.97
2825 2949 0.031010 TAGCCCTCTCCTCTTTCCCC 60.031 60.000 0.00 0.00 0.00 4.81
2826 2950 1.616628 GCCCTCTCCTCTTTCCCCA 60.617 63.158 0.00 0.00 0.00 4.96
2827 2951 1.916206 GCCCTCTCCTCTTTCCCCAC 61.916 65.000 0.00 0.00 0.00 4.61
2828 2952 1.275421 CCCTCTCCTCTTTCCCCACC 61.275 65.000 0.00 0.00 0.00 4.61
2829 2953 1.275421 CCTCTCCTCTTTCCCCACCC 61.275 65.000 0.00 0.00 0.00 4.61
2830 2954 1.229853 TCTCCTCTTTCCCCACCCC 60.230 63.158 0.00 0.00 0.00 4.95
2831 2955 2.204244 TCCTCTTTCCCCACCCCC 60.204 66.667 0.00 0.00 0.00 5.40
2832 2956 2.204306 CCTCTTTCCCCACCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
2833 2957 2.309504 CCTCTTTCCCCACCCCCTC 61.310 68.421 0.00 0.00 0.00 4.30
2834 2958 2.204244 TCTTTCCCCACCCCCTCC 60.204 66.667 0.00 0.00 0.00 4.30
2835 2959 3.347590 CTTTCCCCACCCCCTCCC 61.348 72.222 0.00 0.00 0.00 4.30
2836 2960 3.895600 TTTCCCCACCCCCTCCCT 61.896 66.667 0.00 0.00 0.00 4.20
2837 2961 3.468458 TTTCCCCACCCCCTCCCTT 62.468 63.158 0.00 0.00 0.00 3.95
2838 2962 3.902927 TTCCCCACCCCCTCCCTTC 62.903 68.421 0.00 0.00 0.00 3.46
2844 2968 4.098235 CCCCCTCCCTTCCCCGTA 62.098 72.222 0.00 0.00 0.00 4.02
2845 2969 2.767073 CCCCTCCCTTCCCCGTAC 60.767 72.222 0.00 0.00 0.00 3.67
2846 2970 2.767073 CCCTCCCTTCCCCGTACC 60.767 72.222 0.00 0.00 0.00 3.34
2847 2971 2.767073 CCTCCCTTCCCCGTACCC 60.767 72.222 0.00 0.00 0.00 3.69
2848 2972 2.767073 CTCCCTTCCCCGTACCCC 60.767 72.222 0.00 0.00 0.00 4.95
2849 2973 4.419900 TCCCTTCCCCGTACCCCC 62.420 72.222 0.00 0.00 0.00 5.40
2874 2998 3.452786 CTTCCCTGAGCGAGGCGA 61.453 66.667 0.00 0.00 41.19 5.54
2875 2999 3.708220 CTTCCCTGAGCGAGGCGAC 62.708 68.421 0.00 0.00 41.19 5.19
2890 3014 4.097361 GACCGTGGGCTCCCCTTC 62.097 72.222 1.89 0.00 45.70 3.46
2918 3042 2.764128 CAGCGCCTCCCCCTTCTA 60.764 66.667 2.29 0.00 0.00 2.10
2919 3043 2.040606 AGCGCCTCCCCCTTCTAA 59.959 61.111 2.29 0.00 0.00 2.10
2920 3044 1.384643 AGCGCCTCCCCCTTCTAAT 60.385 57.895 2.29 0.00 0.00 1.73
2921 3045 1.071642 GCGCCTCCCCCTTCTAATC 59.928 63.158 0.00 0.00 0.00 1.75
2922 3046 1.755384 CGCCTCCCCCTTCTAATCC 59.245 63.158 0.00 0.00 0.00 3.01
2923 3047 1.769716 CGCCTCCCCCTTCTAATCCC 61.770 65.000 0.00 0.00 0.00 3.85
2924 3048 1.427895 GCCTCCCCCTTCTAATCCCC 61.428 65.000 0.00 0.00 0.00 4.81
2925 3049 0.272235 CCTCCCCCTTCTAATCCCCT 59.728 60.000 0.00 0.00 0.00 4.79
2926 3050 1.735926 CTCCCCCTTCTAATCCCCTC 58.264 60.000 0.00 0.00 0.00 4.30
2927 3051 0.271005 TCCCCCTTCTAATCCCCTCC 59.729 60.000 0.00 0.00 0.00 4.30
2928 3052 0.772517 CCCCCTTCTAATCCCCTCCC 60.773 65.000 0.00 0.00 0.00 4.30
2929 3053 1.128188 CCCCTTCTAATCCCCTCCCG 61.128 65.000 0.00 0.00 0.00 5.14
2930 3054 1.755384 CCTTCTAATCCCCTCCCGC 59.245 63.158 0.00 0.00 0.00 6.13
2931 3055 1.755384 CTTCTAATCCCCTCCCGCC 59.245 63.158 0.00 0.00 0.00 6.13
2932 3056 2.100879 CTTCTAATCCCCTCCCGCCG 62.101 65.000 0.00 0.00 0.00 6.46
2933 3057 2.842936 CTAATCCCCTCCCGCCGT 60.843 66.667 0.00 0.00 0.00 5.68
2934 3058 2.841044 TAATCCCCTCCCGCCGTC 60.841 66.667 0.00 0.00 0.00 4.79
2968 3092 4.643387 GGGCCTTGCTCGTGTGGT 62.643 66.667 0.84 0.00 0.00 4.16
2969 3093 3.357079 GGCCTTGCTCGTGTGGTG 61.357 66.667 0.00 0.00 0.00 4.17
2970 3094 4.030452 GCCTTGCTCGTGTGGTGC 62.030 66.667 0.00 0.00 35.72 5.01
2971 3095 3.357079 CCTTGCTCGTGTGGTGCC 61.357 66.667 0.00 0.00 34.26 5.01
2972 3096 3.357079 CTTGCTCGTGTGGTGCCC 61.357 66.667 0.00 0.00 34.26 5.36
2995 3119 3.744719 GGCGGCCCGGTTTTTCTC 61.745 66.667 8.12 0.00 0.00 2.87
2996 3120 3.744719 GCGGCCCGGTTTTTCTCC 61.745 66.667 4.77 0.00 0.00 3.71
2997 3121 3.060000 CGGCCCGGTTTTTCTCCC 61.060 66.667 0.00 0.00 0.00 4.30
2998 3122 3.060000 GGCCCGGTTTTTCTCCCG 61.060 66.667 0.00 0.00 43.82 5.14
2999 3123 3.744719 GCCCGGTTTTTCTCCCGC 61.745 66.667 0.00 0.00 42.87 6.13
3000 3124 3.428282 CCCGGTTTTTCTCCCGCG 61.428 66.667 0.00 0.00 42.87 6.46
3001 3125 4.097863 CCGGTTTTTCTCCCGCGC 62.098 66.667 0.00 0.00 42.87 6.86
3002 3126 4.439472 CGGTTTTTCTCCCGCGCG 62.439 66.667 25.67 25.67 37.43 6.86
3003 3127 3.045492 GGTTTTTCTCCCGCGCGA 61.045 61.111 34.63 11.99 0.00 5.87
3004 3128 2.172659 GTTTTTCTCCCGCGCGAC 59.827 61.111 34.63 15.35 0.00 5.19
3005 3129 3.408020 TTTTTCTCCCGCGCGACG 61.408 61.111 34.63 21.08 43.15 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.371786 AGCATACAAGTCATGGTATCACG 58.628 43.478 0.00 0.00 32.57 4.35
27 28 4.835284 TGGAAGCATACAAGTCATGGTA 57.165 40.909 0.00 0.00 33.16 3.25
103 104 3.653164 TCTAGGGATTGTAGGCACATGA 58.347 45.455 0.00 0.00 33.76 3.07
110 112 5.925509 TCCGAAATTTCTAGGGATTGTAGG 58.074 41.667 15.92 5.49 0.00 3.18
184 194 8.239314 ACACTACTCATGCATTTGTCTTTATTG 58.761 33.333 0.00 0.00 0.00 1.90
204 214 2.221055 CGCACTCAGGTTTTGACACTAC 59.779 50.000 0.00 0.00 0.00 2.73
209 219 1.166531 AGCCGCACTCAGGTTTTGAC 61.167 55.000 0.00 0.00 0.00 3.18
242 252 4.201960 TGTTCATGTCGAGAGTAGATGAGC 60.202 45.833 0.00 0.00 0.00 4.26
250 260 6.455647 TGAATTTACTGTTCATGTCGAGAGT 58.544 36.000 0.00 0.00 31.07 3.24
307 317 5.177142 CACCGAAACATCATTCATGCAAAAA 59.823 36.000 0.00 0.00 35.65 1.94
312 322 2.187707 GCACCGAAACATCATTCATGC 58.812 47.619 0.00 0.00 35.65 4.06
313 323 2.159531 ACGCACCGAAACATCATTCATG 60.160 45.455 0.00 0.00 38.64 3.07
314 324 2.083774 ACGCACCGAAACATCATTCAT 58.916 42.857 0.00 0.00 0.00 2.57
315 325 1.196581 CACGCACCGAAACATCATTCA 59.803 47.619 0.00 0.00 0.00 2.57
316 326 1.463056 TCACGCACCGAAACATCATTC 59.537 47.619 0.00 0.00 0.00 2.67
318 328 1.078709 CTCACGCACCGAAACATCAT 58.921 50.000 0.00 0.00 0.00 2.45
319 329 0.948623 CCTCACGCACCGAAACATCA 60.949 55.000 0.00 0.00 0.00 3.07
332 345 1.156736 AATTTGAAGCGGACCTCACG 58.843 50.000 0.00 0.00 0.00 4.35
337 350 4.555262 TGAATTGAAATTTGAAGCGGACC 58.445 39.130 0.00 0.00 0.00 4.46
345 358 7.954835 AGATGTCCAACTGAATTGAAATTTGA 58.045 30.769 0.00 0.00 41.23 2.69
355 368 6.382570 AGAGCTACTTAGATGTCCAACTGAAT 59.617 38.462 0.00 0.00 0.00 2.57
360 373 5.584253 TGAGAGCTACTTAGATGTCCAAC 57.416 43.478 0.00 0.00 31.79 3.77
361 374 5.480422 TGTTGAGAGCTACTTAGATGTCCAA 59.520 40.000 0.00 0.00 31.79 3.53
362 375 5.016831 TGTTGAGAGCTACTTAGATGTCCA 58.983 41.667 0.00 0.00 31.79 4.02
364 377 7.891183 TTTTGTTGAGAGCTACTTAGATGTC 57.109 36.000 0.00 0.00 33.22 3.06
396 409 5.221224 ACAAATTGGGTCACAACAGTACATG 60.221 40.000 0.00 0.00 42.94 3.21
397 410 4.892934 ACAAATTGGGTCACAACAGTACAT 59.107 37.500 0.00 0.00 42.94 2.29
398 411 4.274147 ACAAATTGGGTCACAACAGTACA 58.726 39.130 0.00 0.00 42.94 2.90
399 412 4.911514 ACAAATTGGGTCACAACAGTAC 57.088 40.909 0.00 0.00 42.94 2.73
400 413 5.931294 TCTACAAATTGGGTCACAACAGTA 58.069 37.500 0.00 0.00 42.94 2.74
401 414 4.787551 TCTACAAATTGGGTCACAACAGT 58.212 39.130 0.00 0.00 42.94 3.55
402 415 4.320494 GCTCTACAAATTGGGTCACAACAG 60.320 45.833 0.00 0.00 42.94 3.16
403 416 3.568007 GCTCTACAAATTGGGTCACAACA 59.432 43.478 0.00 0.00 42.94 3.33
404 417 3.821033 AGCTCTACAAATTGGGTCACAAC 59.179 43.478 0.00 0.00 42.94 3.32
405 418 4.098914 AGCTCTACAAATTGGGTCACAA 57.901 40.909 0.00 0.00 44.54 3.33
406 419 3.788227 AGCTCTACAAATTGGGTCACA 57.212 42.857 0.00 0.00 0.00 3.58
407 420 4.833390 AGTAGCTCTACAAATTGGGTCAC 58.167 43.478 9.44 0.00 38.48 3.67
408 421 4.530553 TGAGTAGCTCTACAAATTGGGTCA 59.469 41.667 9.44 0.00 38.48 4.02
409 422 5.086104 TGAGTAGCTCTACAAATTGGGTC 57.914 43.478 9.44 0.00 38.48 4.46
410 423 4.777896 TCTGAGTAGCTCTACAAATTGGGT 59.222 41.667 9.44 0.00 38.48 4.51
411 424 5.344743 TCTGAGTAGCTCTACAAATTGGG 57.655 43.478 9.44 0.00 38.48 4.12
412 425 6.344500 ACATCTGAGTAGCTCTACAAATTGG 58.656 40.000 9.44 0.00 38.48 3.16
413 426 7.547019 TGAACATCTGAGTAGCTCTACAAATTG 59.453 37.037 9.44 0.00 38.48 2.32
414 427 7.615403 TGAACATCTGAGTAGCTCTACAAATT 58.385 34.615 9.44 0.00 38.48 1.82
415 428 7.175347 TGAACATCTGAGTAGCTCTACAAAT 57.825 36.000 9.44 0.00 38.48 2.32
416 429 6.590234 TGAACATCTGAGTAGCTCTACAAA 57.410 37.500 9.44 0.00 38.48 2.83
417 430 6.590234 TTGAACATCTGAGTAGCTCTACAA 57.410 37.500 9.44 0.00 38.48 2.41
418 431 6.590234 TTTGAACATCTGAGTAGCTCTACA 57.410 37.500 9.44 0.00 38.48 2.74
419 432 9.587772 TTTATTTGAACATCTGAGTAGCTCTAC 57.412 33.333 0.00 0.00 36.35 2.59
420 433 9.587772 GTTTATTTGAACATCTGAGTAGCTCTA 57.412 33.333 0.00 0.00 0.00 2.43
421 434 8.317679 AGTTTATTTGAACATCTGAGTAGCTCT 58.682 33.333 0.00 0.00 31.94 4.09
422 435 8.386606 CAGTTTATTTGAACATCTGAGTAGCTC 58.613 37.037 0.00 0.00 31.94 4.09
432 445 9.834628 TTCGGTATTTCAGTTTATTTGAACATC 57.165 29.630 0.00 0.00 34.50 3.06
437 450 7.441890 TGCTTCGGTATTTCAGTTTATTTGA 57.558 32.000 0.00 0.00 0.00 2.69
445 458 3.596214 AACGATGCTTCGGTATTTCAGT 58.404 40.909 23.79 0.00 45.30 3.41
497 515 4.038642 GCCCCAGTGAACAGTAAATTCAAA 59.961 41.667 0.00 0.00 37.80 2.69
500 519 3.153919 TGCCCCAGTGAACAGTAAATTC 58.846 45.455 0.00 0.00 0.00 2.17
516 535 2.764128 TCCGGACTCATCTGCCCC 60.764 66.667 0.00 0.00 0.00 5.80
517 536 2.060980 AGTCCGGACTCATCTGCCC 61.061 63.158 31.69 1.79 36.92 5.36
553 573 7.388437 ACGGATGTAAATAGTGTAGGTTTTCA 58.612 34.615 0.00 0.00 0.00 2.69
554 574 7.838771 ACGGATGTAAATAGTGTAGGTTTTC 57.161 36.000 0.00 0.00 0.00 2.29
587 607 8.715191 ATCAAAGCACACATAAAGAAACAAAA 57.285 26.923 0.00 0.00 0.00 2.44
612 634 9.300681 ACATGTCCTAAGAAATTCAGATCAAAA 57.699 29.630 0.00 0.00 0.00 2.44
616 638 9.255304 GTCTACATGTCCTAAGAAATTCAGATC 57.745 37.037 0.00 0.00 0.00 2.75
617 639 8.762645 TGTCTACATGTCCTAAGAAATTCAGAT 58.237 33.333 0.00 0.00 0.00 2.90
618 640 8.134202 TGTCTACATGTCCTAAGAAATTCAGA 57.866 34.615 0.00 0.00 0.00 3.27
619 641 8.954950 ATGTCTACATGTCCTAAGAAATTCAG 57.045 34.615 0.00 0.00 34.83 3.02
622 644 9.277783 GCATATGTCTACATGTCCTAAGAAATT 57.722 33.333 0.00 0.00 37.15 1.82
686 709 9.325150 CGATCTTAAAACGTCAAACATAAATGT 57.675 29.630 0.00 0.00 44.20 2.71
687 710 8.785101 CCGATCTTAAAACGTCAAACATAAATG 58.215 33.333 0.00 0.00 0.00 2.32
688 711 8.508875 ACCGATCTTAAAACGTCAAACATAAAT 58.491 29.630 0.00 0.00 0.00 1.40
689 712 7.863666 ACCGATCTTAAAACGTCAAACATAAA 58.136 30.769 0.00 0.00 0.00 1.40
690 713 7.424227 ACCGATCTTAAAACGTCAAACATAA 57.576 32.000 0.00 0.00 0.00 1.90
691 714 8.706492 ATACCGATCTTAAAACGTCAAACATA 57.294 30.769 0.00 0.00 0.00 2.29
692 715 5.934935 ACCGATCTTAAAACGTCAAACAT 57.065 34.783 0.00 0.00 0.00 2.71
693 716 6.645827 TGATACCGATCTTAAAACGTCAAACA 59.354 34.615 0.00 0.00 32.79 2.83
694 717 7.052565 TGATACCGATCTTAAAACGTCAAAC 57.947 36.000 0.00 0.00 32.79 2.93
695 718 7.546316 TCATGATACCGATCTTAAAACGTCAAA 59.454 33.333 0.00 0.00 32.79 2.69
696 719 7.036829 TCATGATACCGATCTTAAAACGTCAA 58.963 34.615 0.00 0.00 32.79 3.18
697 720 6.566141 TCATGATACCGATCTTAAAACGTCA 58.434 36.000 0.00 0.00 32.79 4.35
698 721 6.916387 TCTCATGATACCGATCTTAAAACGTC 59.084 38.462 0.00 0.00 32.79 4.34
699 722 6.802608 TCTCATGATACCGATCTTAAAACGT 58.197 36.000 0.00 0.00 32.79 3.99
700 723 6.129062 GCTCTCATGATACCGATCTTAAAACG 60.129 42.308 0.00 0.00 32.79 3.60
701 724 6.701841 TGCTCTCATGATACCGATCTTAAAAC 59.298 38.462 0.00 0.00 32.79 2.43
702 725 6.816136 TGCTCTCATGATACCGATCTTAAAA 58.184 36.000 0.00 0.00 32.79 1.52
703 726 6.405278 TGCTCTCATGATACCGATCTTAAA 57.595 37.500 0.00 0.00 32.79 1.52
704 727 6.596309 ATGCTCTCATGATACCGATCTTAA 57.404 37.500 0.00 0.00 32.79 1.85
705 728 7.888250 ATATGCTCTCATGATACCGATCTTA 57.112 36.000 0.00 0.00 34.22 2.10
706 729 6.788598 ATATGCTCTCATGATACCGATCTT 57.211 37.500 0.00 0.00 34.22 2.40
707 730 7.888250 TTATATGCTCTCATGATACCGATCT 57.112 36.000 0.00 0.00 34.22 2.75
708 731 8.932945 TTTTATATGCTCTCATGATACCGATC 57.067 34.615 0.00 0.00 34.22 3.69
709 732 7.984050 CCTTTTATATGCTCTCATGATACCGAT 59.016 37.037 0.00 0.00 34.22 4.18
710 733 7.039011 ACCTTTTATATGCTCTCATGATACCGA 60.039 37.037 0.00 0.00 34.22 4.69
711 734 7.099764 ACCTTTTATATGCTCTCATGATACCG 58.900 38.462 0.00 0.00 34.22 4.02
712 735 9.593134 CTACCTTTTATATGCTCTCATGATACC 57.407 37.037 0.00 0.00 34.22 2.73
719 742 9.143155 TGTGATACTACCTTTTATATGCTCTCA 57.857 33.333 0.00 0.00 0.00 3.27
720 743 9.413048 GTGTGATACTACCTTTTATATGCTCTC 57.587 37.037 0.00 0.00 0.00 3.20
721 744 8.082852 CGTGTGATACTACCTTTTATATGCTCT 58.917 37.037 0.00 0.00 0.00 4.09
722 745 8.080417 TCGTGTGATACTACCTTTTATATGCTC 58.920 37.037 0.00 0.00 0.00 4.26
723 746 7.948357 TCGTGTGATACTACCTTTTATATGCT 58.052 34.615 0.00 0.00 0.00 3.79
724 747 8.758633 ATCGTGTGATACTACCTTTTATATGC 57.241 34.615 0.00 0.00 31.44 3.14
731 754 9.661563 TGAAAAATATCGTGTGATACTACCTTT 57.338 29.630 0.00 0.00 39.81 3.11
732 755 9.832445 ATGAAAAATATCGTGTGATACTACCTT 57.168 29.630 0.00 0.00 39.81 3.50
966 1024 5.972935 TGCGTGGATATGGTGGTTATATAG 58.027 41.667 0.00 0.00 0.00 1.31
1859 1930 1.961277 CTTGTCCGCGACCAGCTTT 60.961 57.895 8.23 0.00 45.59 3.51
1868 1975 3.649277 CTCCACCTCCTTGTCCGCG 62.649 68.421 0.00 0.00 0.00 6.46
2080 2195 1.606668 CAAAAGGGCACGCTAAACTCA 59.393 47.619 0.00 0.00 0.00 3.41
2102 2217 1.335964 CGAAGGAGAGTGACGCTTCAA 60.336 52.381 0.00 0.00 31.90 2.69
2108 2223 1.130749 CTGGTACGAAGGAGAGTGACG 59.869 57.143 0.00 0.00 0.00 4.35
2143 2258 0.893447 ACGCGGGTAAAGCTAGAAGT 59.107 50.000 12.47 0.00 0.00 3.01
2337 2461 5.123820 TGTTCTCGAGCAAATAAGGGAAATG 59.876 40.000 7.81 0.00 0.00 2.32
2377 2501 5.036117 TCTCGAGGAAATAAGGGAAATGG 57.964 43.478 13.56 0.00 0.00 3.16
2385 2509 7.513968 CACTTTCTTGTTCTCGAGGAAATAAG 58.486 38.462 13.56 13.70 35.51 1.73
2387 2511 5.408604 GCACTTTCTTGTTCTCGAGGAAATA 59.591 40.000 13.56 0.00 35.51 1.40
2388 2512 4.214332 GCACTTTCTTGTTCTCGAGGAAAT 59.786 41.667 13.56 2.34 35.51 2.17
2389 2513 3.560068 GCACTTTCTTGTTCTCGAGGAAA 59.440 43.478 13.56 12.36 35.51 3.13
2395 2519 4.085415 GCAATTTGCACTTTCTTGTTCTCG 60.085 41.667 16.35 0.00 44.26 4.04
2415 2539 9.049523 TGCATGTAACATTTTCTTATTTTGCAA 57.950 25.926 0.00 0.00 31.64 4.08
2416 2540 8.599055 TGCATGTAACATTTTCTTATTTTGCA 57.401 26.923 0.00 0.00 0.00 4.08
2429 2553 9.177608 ACTCACTATTTGTATGCATGTAACATT 57.822 29.630 10.16 0.00 0.00 2.71
2430 2554 8.615211 CACTCACTATTTGTATGCATGTAACAT 58.385 33.333 10.16 0.00 0.00 2.71
2431 2555 7.606073 ACACTCACTATTTGTATGCATGTAACA 59.394 33.333 10.16 2.61 0.00 2.41
2432 2556 7.974675 ACACTCACTATTTGTATGCATGTAAC 58.025 34.615 10.16 0.00 0.00 2.50
2433 2557 9.660180 TTACACTCACTATTTGTATGCATGTAA 57.340 29.630 10.16 2.59 0.00 2.41
2434 2558 9.830975 ATTACACTCACTATTTGTATGCATGTA 57.169 29.630 10.16 0.00 0.00 2.29
2435 2559 8.737168 ATTACACTCACTATTTGTATGCATGT 57.263 30.769 10.16 0.00 0.00 3.21
2436 2560 9.442033 CAATTACACTCACTATTTGTATGCATG 57.558 33.333 10.16 0.00 0.00 4.06
2437 2561 8.131100 GCAATTACACTCACTATTTGTATGCAT 58.869 33.333 3.79 3.79 34.24 3.96
2438 2562 7.120432 TGCAATTACACTCACTATTTGTATGCA 59.880 33.333 0.00 0.00 38.48 3.96
2439 2563 7.471721 TGCAATTACACTCACTATTTGTATGC 58.528 34.615 0.00 0.00 34.48 3.14
2440 2564 8.668353 ACTGCAATTACACTCACTATTTGTATG 58.332 33.333 0.00 0.00 0.00 2.39
2441 2565 8.668353 CACTGCAATTACACTCACTATTTGTAT 58.332 33.333 0.00 0.00 0.00 2.29
2442 2566 7.659799 ACACTGCAATTACACTCACTATTTGTA 59.340 33.333 0.00 0.00 0.00 2.41
2443 2567 6.486657 ACACTGCAATTACACTCACTATTTGT 59.513 34.615 0.00 0.00 0.00 2.83
2444 2568 6.902341 ACACTGCAATTACACTCACTATTTG 58.098 36.000 0.00 0.00 0.00 2.32
2445 2569 8.792830 ATACACTGCAATTACACTCACTATTT 57.207 30.769 0.00 0.00 0.00 1.40
2446 2570 8.792830 AATACACTGCAATTACACTCACTATT 57.207 30.769 0.00 0.00 0.00 1.73
2449 2573 9.314321 GTATAATACACTGCAATTACACTCACT 57.686 33.333 0.00 0.00 0.00 3.41
2450 2574 8.266682 CGTATAATACACTGCAATTACACTCAC 58.733 37.037 0.00 0.00 0.00 3.51
2451 2575 8.192110 TCGTATAATACACTGCAATTACACTCA 58.808 33.333 0.00 0.00 0.00 3.41
2452 2576 8.477709 GTCGTATAATACACTGCAATTACACTC 58.522 37.037 0.00 0.00 0.00 3.51
2453 2577 7.977293 TGTCGTATAATACACTGCAATTACACT 59.023 33.333 0.00 0.00 0.00 3.55
2454 2578 8.122306 TGTCGTATAATACACTGCAATTACAC 57.878 34.615 0.00 0.00 0.00 2.90
2455 2579 8.705048 TTGTCGTATAATACACTGCAATTACA 57.295 30.769 0.00 0.00 0.00 2.41
2456 2580 9.976255 TTTTGTCGTATAATACACTGCAATTAC 57.024 29.630 0.00 0.00 0.00 1.89
2480 2604 5.925969 CAGCTTAATCACATTTCCCGTTTTT 59.074 36.000 0.00 0.00 0.00 1.94
2481 2605 5.010617 ACAGCTTAATCACATTTCCCGTTTT 59.989 36.000 0.00 0.00 0.00 2.43
2482 2606 4.522789 ACAGCTTAATCACATTTCCCGTTT 59.477 37.500 0.00 0.00 0.00 3.60
2483 2607 4.079253 ACAGCTTAATCACATTTCCCGTT 58.921 39.130 0.00 0.00 0.00 4.44
2484 2608 3.686016 ACAGCTTAATCACATTTCCCGT 58.314 40.909 0.00 0.00 0.00 5.28
2485 2609 4.155826 TGAACAGCTTAATCACATTTCCCG 59.844 41.667 0.00 0.00 0.00 5.14
2486 2610 5.643379 TGAACAGCTTAATCACATTTCCC 57.357 39.130 0.00 0.00 0.00 3.97
2487 2611 7.429340 CGTATTGAACAGCTTAATCACATTTCC 59.571 37.037 0.00 0.00 0.00 3.13
2488 2612 7.429340 CCGTATTGAACAGCTTAATCACATTTC 59.571 37.037 0.00 0.00 0.00 2.17
2489 2613 7.250569 CCGTATTGAACAGCTTAATCACATTT 58.749 34.615 0.00 0.00 0.00 2.32
2490 2614 6.183360 CCCGTATTGAACAGCTTAATCACATT 60.183 38.462 0.00 0.00 0.00 2.71
2491 2615 5.296780 CCCGTATTGAACAGCTTAATCACAT 59.703 40.000 0.00 0.00 0.00 3.21
2492 2616 4.634004 CCCGTATTGAACAGCTTAATCACA 59.366 41.667 0.00 0.00 0.00 3.58
2493 2617 4.634443 ACCCGTATTGAACAGCTTAATCAC 59.366 41.667 0.00 0.00 0.00 3.06
2494 2618 4.839121 ACCCGTATTGAACAGCTTAATCA 58.161 39.130 0.00 0.00 0.00 2.57
2495 2619 5.585047 AGAACCCGTATTGAACAGCTTAATC 59.415 40.000 0.00 0.00 0.00 1.75
2496 2620 5.354234 CAGAACCCGTATTGAACAGCTTAAT 59.646 40.000 0.00 0.00 0.00 1.40
2497 2621 4.693566 CAGAACCCGTATTGAACAGCTTAA 59.306 41.667 0.00 0.00 0.00 1.85
2498 2622 4.020928 TCAGAACCCGTATTGAACAGCTTA 60.021 41.667 0.00 0.00 0.00 3.09
2499 2623 3.074412 CAGAACCCGTATTGAACAGCTT 58.926 45.455 0.00 0.00 0.00 3.74
2500 2624 2.301870 TCAGAACCCGTATTGAACAGCT 59.698 45.455 0.00 0.00 0.00 4.24
2501 2625 2.695359 TCAGAACCCGTATTGAACAGC 58.305 47.619 0.00 0.00 0.00 4.40
2502 2626 5.005394 CGTAATCAGAACCCGTATTGAACAG 59.995 44.000 0.00 0.00 0.00 3.16
2503 2627 4.865925 CGTAATCAGAACCCGTATTGAACA 59.134 41.667 0.00 0.00 0.00 3.18
2504 2628 4.269363 CCGTAATCAGAACCCGTATTGAAC 59.731 45.833 0.00 0.00 0.00 3.18
2505 2629 4.081531 ACCGTAATCAGAACCCGTATTGAA 60.082 41.667 0.00 0.00 0.00 2.69
2506 2630 3.448301 ACCGTAATCAGAACCCGTATTGA 59.552 43.478 0.00 0.00 0.00 2.57
2507 2631 3.554324 CACCGTAATCAGAACCCGTATTG 59.446 47.826 0.00 0.00 0.00 1.90
2508 2632 3.196254 ACACCGTAATCAGAACCCGTATT 59.804 43.478 0.00 0.00 0.00 1.89
2509 2633 2.762327 ACACCGTAATCAGAACCCGTAT 59.238 45.455 0.00 0.00 0.00 3.06
2510 2634 2.170166 ACACCGTAATCAGAACCCGTA 58.830 47.619 0.00 0.00 0.00 4.02
2511 2635 0.971386 ACACCGTAATCAGAACCCGT 59.029 50.000 0.00 0.00 0.00 5.28
2512 2636 2.088950 AACACCGTAATCAGAACCCG 57.911 50.000 0.00 0.00 0.00 5.28
2513 2637 4.572909 ACTAAACACCGTAATCAGAACCC 58.427 43.478 0.00 0.00 0.00 4.11
2514 2638 6.368213 CAAACTAAACACCGTAATCAGAACC 58.632 40.000 0.00 0.00 0.00 3.62
2515 2639 5.849604 GCAAACTAAACACCGTAATCAGAAC 59.150 40.000 0.00 0.00 0.00 3.01
2516 2640 5.761234 AGCAAACTAAACACCGTAATCAGAA 59.239 36.000 0.00 0.00 0.00 3.02
2517 2641 5.302360 AGCAAACTAAACACCGTAATCAGA 58.698 37.500 0.00 0.00 0.00 3.27
2518 2642 5.390567 GGAGCAAACTAAACACCGTAATCAG 60.391 44.000 0.00 0.00 0.00 2.90
2519 2643 4.453136 GGAGCAAACTAAACACCGTAATCA 59.547 41.667 0.00 0.00 0.00 2.57
2520 2644 4.694037 AGGAGCAAACTAAACACCGTAATC 59.306 41.667 0.00 0.00 0.00 1.75
2521 2645 4.648651 AGGAGCAAACTAAACACCGTAAT 58.351 39.130 0.00 0.00 0.00 1.89
2522 2646 4.075963 AGGAGCAAACTAAACACCGTAA 57.924 40.909 0.00 0.00 0.00 3.18
2523 2647 3.756933 AGGAGCAAACTAAACACCGTA 57.243 42.857 0.00 0.00 0.00 4.02
2524 2648 2.632987 AGGAGCAAACTAAACACCGT 57.367 45.000 0.00 0.00 0.00 4.83
2525 2649 3.982576 AAAGGAGCAAACTAAACACCG 57.017 42.857 0.00 0.00 0.00 4.94
2526 2650 7.541091 GCTAATTAAAGGAGCAAACTAAACACC 59.459 37.037 2.65 0.00 36.20 4.16
2527 2651 8.297426 AGCTAATTAAAGGAGCAAACTAAACAC 58.703 33.333 8.72 0.00 38.73 3.32
2528 2652 8.296713 CAGCTAATTAAAGGAGCAAACTAAACA 58.703 33.333 8.72 0.00 38.73 2.83
2529 2653 7.273598 GCAGCTAATTAAAGGAGCAAACTAAAC 59.726 37.037 8.72 0.00 38.73 2.01
2530 2654 7.176690 AGCAGCTAATTAAAGGAGCAAACTAAA 59.823 33.333 0.00 0.00 38.73 1.85
2531 2655 6.659242 AGCAGCTAATTAAAGGAGCAAACTAA 59.341 34.615 0.00 0.00 38.73 2.24
2532 2656 6.094048 CAGCAGCTAATTAAAGGAGCAAACTA 59.906 38.462 0.00 0.00 38.73 2.24
2533 2657 5.012893 AGCAGCTAATTAAAGGAGCAAACT 58.987 37.500 0.00 1.76 38.73 2.66
2534 2658 5.098211 CAGCAGCTAATTAAAGGAGCAAAC 58.902 41.667 0.00 0.00 38.73 2.93
2535 2659 4.380867 GCAGCAGCTAATTAAAGGAGCAAA 60.381 41.667 0.00 0.00 38.73 3.68
2536 2660 3.129287 GCAGCAGCTAATTAAAGGAGCAA 59.871 43.478 0.00 0.00 38.73 3.91
2537 2661 2.684881 GCAGCAGCTAATTAAAGGAGCA 59.315 45.455 0.00 0.00 38.73 4.26
2538 2662 2.286654 CGCAGCAGCTAATTAAAGGAGC 60.287 50.000 0.00 0.00 39.10 4.70
2539 2663 2.289002 CCGCAGCAGCTAATTAAAGGAG 59.711 50.000 0.00 0.00 39.10 3.69
2540 2664 2.288666 CCGCAGCAGCTAATTAAAGGA 58.711 47.619 0.00 0.00 39.10 3.36
2541 2665 1.334869 CCCGCAGCAGCTAATTAAAGG 59.665 52.381 0.00 0.00 39.10 3.11
2542 2666 1.334869 CCCCGCAGCAGCTAATTAAAG 59.665 52.381 0.00 0.00 39.10 1.85
2543 2667 1.388547 CCCCGCAGCAGCTAATTAAA 58.611 50.000 0.00 0.00 39.10 1.52
2544 2668 1.101049 GCCCCGCAGCAGCTAATTAA 61.101 55.000 0.00 0.00 39.10 1.40
2545 2669 1.525995 GCCCCGCAGCAGCTAATTA 60.526 57.895 0.00 0.00 39.10 1.40
2546 2670 2.830370 GCCCCGCAGCAGCTAATT 60.830 61.111 0.00 0.00 39.10 1.40
2547 2671 3.801997 AGCCCCGCAGCAGCTAAT 61.802 61.111 0.00 0.00 39.10 1.73
2548 2672 4.783621 CAGCCCCGCAGCAGCTAA 62.784 66.667 0.00 0.00 39.10 3.09
2559 2683 3.697439 TATCGCCAACTGCAGCCCC 62.697 63.158 15.27 0.00 41.33 5.80
2560 2684 1.103398 ATTATCGCCAACTGCAGCCC 61.103 55.000 15.27 0.00 41.33 5.19
2561 2685 0.308993 GATTATCGCCAACTGCAGCC 59.691 55.000 15.27 0.00 41.33 4.85
2562 2686 0.308993 GGATTATCGCCAACTGCAGC 59.691 55.000 15.27 0.00 41.33 5.25
2563 2687 1.959042 AGGATTATCGCCAACTGCAG 58.041 50.000 13.48 13.48 41.33 4.41
2564 2688 2.698274 TCTAGGATTATCGCCAACTGCA 59.302 45.455 0.00 0.00 41.33 4.41
2565 2689 3.386768 TCTAGGATTATCGCCAACTGC 57.613 47.619 0.00 0.00 0.00 4.40
2566 2690 4.499183 GGATCTAGGATTATCGCCAACTG 58.501 47.826 0.00 0.00 0.00 3.16
2567 2691 3.193691 CGGATCTAGGATTATCGCCAACT 59.806 47.826 0.00 0.00 0.00 3.16
2568 2692 3.192844 TCGGATCTAGGATTATCGCCAAC 59.807 47.826 0.00 0.00 0.00 3.77
2569 2693 3.427573 TCGGATCTAGGATTATCGCCAA 58.572 45.455 0.00 0.00 0.00 4.52
2570 2694 3.017442 CTCGGATCTAGGATTATCGCCA 58.983 50.000 0.00 0.00 0.00 5.69
2571 2695 2.359531 CCTCGGATCTAGGATTATCGCC 59.640 54.545 8.50 0.00 36.08 5.54
2572 2696 2.223618 GCCTCGGATCTAGGATTATCGC 60.224 54.545 16.14 0.00 36.08 4.58
2573 2697 3.017442 TGCCTCGGATCTAGGATTATCG 58.983 50.000 16.14 0.00 36.08 2.92
2574 2698 4.464597 AGTTGCCTCGGATCTAGGATTATC 59.535 45.833 16.14 2.00 36.08 1.75
2575 2699 4.421131 AGTTGCCTCGGATCTAGGATTAT 58.579 43.478 16.14 0.04 36.08 1.28
2576 2700 3.827302 GAGTTGCCTCGGATCTAGGATTA 59.173 47.826 16.14 2.18 36.08 1.75
2577 2701 2.630580 GAGTTGCCTCGGATCTAGGATT 59.369 50.000 16.14 1.37 36.08 3.01
2578 2702 2.243810 GAGTTGCCTCGGATCTAGGAT 58.756 52.381 16.14 1.87 36.08 3.24
2579 2703 1.693627 GAGTTGCCTCGGATCTAGGA 58.306 55.000 16.14 1.12 36.08 2.94
2589 2713 2.003301 GTCTTTGGATCGAGTTGCCTC 58.997 52.381 0.00 0.00 0.00 4.70
2590 2714 1.339151 GGTCTTTGGATCGAGTTGCCT 60.339 52.381 0.00 0.00 0.00 4.75
2591 2715 1.087501 GGTCTTTGGATCGAGTTGCC 58.912 55.000 0.00 0.00 0.00 4.52
2592 2716 1.087501 GGGTCTTTGGATCGAGTTGC 58.912 55.000 0.00 0.00 0.00 4.17
2593 2717 1.359848 CGGGTCTTTGGATCGAGTTG 58.640 55.000 0.00 0.00 0.00 3.16
2594 2718 0.391263 GCGGGTCTTTGGATCGAGTT 60.391 55.000 0.00 0.00 0.00 3.01
2595 2719 1.218316 GCGGGTCTTTGGATCGAGT 59.782 57.895 0.00 0.00 0.00 4.18
2596 2720 0.744874 TAGCGGGTCTTTGGATCGAG 59.255 55.000 0.00 0.00 0.00 4.04
2597 2721 0.744874 CTAGCGGGTCTTTGGATCGA 59.255 55.000 0.00 0.00 0.00 3.59
2598 2722 0.249489 CCTAGCGGGTCTTTGGATCG 60.249 60.000 0.00 0.00 0.00 3.69
2599 2723 0.106894 CCCTAGCGGGTCTTTGGATC 59.893 60.000 0.00 0.00 46.12 3.36
2600 2724 2.221918 CCCTAGCGGGTCTTTGGAT 58.778 57.895 0.00 0.00 46.12 3.41
2601 2725 3.721868 CCCTAGCGGGTCTTTGGA 58.278 61.111 0.00 0.00 46.12 3.53
2672 2796 1.990060 ATGGAGACGACACTGGGGG 60.990 63.158 0.00 0.00 0.00 5.40
2673 2797 1.219124 CATGGAGACGACACTGGGG 59.781 63.158 0.00 0.00 0.00 4.96
2674 2798 0.174389 CTCATGGAGACGACACTGGG 59.826 60.000 0.00 0.00 0.00 4.45
2675 2799 0.459237 GCTCATGGAGACGACACTGG 60.459 60.000 0.00 0.00 0.00 4.00
2676 2800 0.799917 CGCTCATGGAGACGACACTG 60.800 60.000 0.00 0.00 33.54 3.66
2677 2801 1.508545 CGCTCATGGAGACGACACT 59.491 57.895 0.00 0.00 33.54 3.55
2678 2802 1.517257 CCGCTCATGGAGACGACAC 60.517 63.158 10.21 0.00 33.54 3.67
2679 2803 2.710902 CCCGCTCATGGAGACGACA 61.711 63.158 10.21 0.00 33.54 4.35
2680 2804 2.105128 CCCGCTCATGGAGACGAC 59.895 66.667 10.21 0.00 33.54 4.34
2681 2805 3.838271 GCCCGCTCATGGAGACGA 61.838 66.667 10.21 0.00 33.54 4.20
2682 2806 4.899239 GGCCCGCTCATGGAGACG 62.899 72.222 0.00 0.87 0.00 4.18
2683 2807 4.899239 CGGCCCGCTCATGGAGAC 62.899 72.222 0.00 0.00 0.00 3.36
2705 2829 4.699522 GGACGGGTCAGGGTGCAC 62.700 72.222 8.80 8.80 0.00 4.57
2719 2843 3.228017 GGAGAGGGCTAGCGGGAC 61.228 72.222 9.00 0.00 0.00 4.46
2720 2844 4.541648 GGGAGAGGGCTAGCGGGA 62.542 72.222 9.00 0.00 0.00 5.14
2723 2847 4.548513 AGGGGGAGAGGGCTAGCG 62.549 72.222 9.00 0.00 0.00 4.26
2724 2848 2.040359 AAGGGGGAGAGGGCTAGC 60.040 66.667 6.04 6.04 0.00 3.42
2725 2849 1.460497 GGAAGGGGGAGAGGGCTAG 60.460 68.421 0.00 0.00 0.00 3.42
2726 2850 2.703430 GGAAGGGGGAGAGGGCTA 59.297 66.667 0.00 0.00 0.00 3.93
2727 2851 4.439901 GGGAAGGGGGAGAGGGCT 62.440 72.222 0.00 0.00 0.00 5.19
2728 2852 4.760220 TGGGAAGGGGGAGAGGGC 62.760 72.222 0.00 0.00 0.00 5.19
2729 2853 2.692741 GTGGGAAGGGGGAGAGGG 60.693 72.222 0.00 0.00 0.00 4.30
2730 2854 2.124996 TGTGGGAAGGGGGAGAGG 59.875 66.667 0.00 0.00 0.00 3.69
2731 2855 1.538876 TGTGTGGGAAGGGGGAGAG 60.539 63.158 0.00 0.00 0.00 3.20
2732 2856 1.846124 GTGTGTGGGAAGGGGGAGA 60.846 63.158 0.00 0.00 0.00 3.71
2733 2857 2.757077 GTGTGTGGGAAGGGGGAG 59.243 66.667 0.00 0.00 0.00 4.30
2734 2858 2.856988 GGTGTGTGGGAAGGGGGA 60.857 66.667 0.00 0.00 0.00 4.81
2735 2859 3.979497 GGGTGTGTGGGAAGGGGG 61.979 72.222 0.00 0.00 0.00 5.40
2736 2860 2.858974 AGGGTGTGTGGGAAGGGG 60.859 66.667 0.00 0.00 0.00 4.79
2737 2861 2.757077 GAGGGTGTGTGGGAAGGG 59.243 66.667 0.00 0.00 0.00 3.95
2738 2862 2.757077 GGAGGGTGTGTGGGAAGG 59.243 66.667 0.00 0.00 0.00 3.46
2739 2863 1.427072 AAGGGAGGGTGTGTGGGAAG 61.427 60.000 0.00 0.00 0.00 3.46
2740 2864 1.386772 AAGGGAGGGTGTGTGGGAA 60.387 57.895 0.00 0.00 0.00 3.97
2741 2865 1.846124 GAAGGGAGGGTGTGTGGGA 60.846 63.158 0.00 0.00 0.00 4.37
2742 2866 2.757077 GAAGGGAGGGTGTGTGGG 59.243 66.667 0.00 0.00 0.00 4.61
2743 2867 2.347490 CGAAGGGAGGGTGTGTGG 59.653 66.667 0.00 0.00 0.00 4.17
2785 2909 3.591254 GAGACGGGTCAGGGTGCAC 62.591 68.421 8.80 8.80 0.00 4.57
2786 2910 3.311110 GAGACGGGTCAGGGTGCA 61.311 66.667 1.17 0.00 0.00 4.57
2787 2911 4.436998 CGAGACGGGTCAGGGTGC 62.437 72.222 1.17 0.00 0.00 5.01
2788 2912 4.436998 GCGAGACGGGTCAGGGTG 62.437 72.222 1.17 0.00 0.00 4.61
2789 2913 3.278072 TAGCGAGACGGGTCAGGGT 62.278 63.158 1.17 0.97 0.00 4.34
2790 2914 2.439701 TAGCGAGACGGGTCAGGG 60.440 66.667 1.17 0.00 0.00 4.45
2791 2915 3.111939 CTAGCGAGACGGGTCAGG 58.888 66.667 1.17 0.00 0.00 3.86
2792 2916 2.409651 GCTAGCGAGACGGGTCAG 59.590 66.667 0.00 0.00 0.00 3.51
2793 2917 3.138798 GGCTAGCGAGACGGGTCA 61.139 66.667 9.00 0.00 0.00 4.02
2794 2918 3.902086 GGGCTAGCGAGACGGGTC 61.902 72.222 9.00 0.00 0.00 4.46
2795 2919 4.444081 AGGGCTAGCGAGACGGGT 62.444 66.667 9.00 0.00 0.00 5.28
2796 2920 3.597728 GAGGGCTAGCGAGACGGG 61.598 72.222 9.00 0.00 0.00 5.28
2797 2921 2.517402 AGAGGGCTAGCGAGACGG 60.517 66.667 9.00 0.00 0.00 4.79
2798 2922 2.548295 GGAGAGGGCTAGCGAGACG 61.548 68.421 9.00 0.00 0.00 4.18
2799 2923 1.152839 AGGAGAGGGCTAGCGAGAC 60.153 63.158 9.00 0.00 0.00 3.36
2800 2924 1.149627 GAGGAGAGGGCTAGCGAGA 59.850 63.158 9.00 0.00 0.00 4.04
2801 2925 0.467290 AAGAGGAGAGGGCTAGCGAG 60.467 60.000 9.00 0.00 0.00 5.03
2802 2926 0.033011 AAAGAGGAGAGGGCTAGCGA 60.033 55.000 9.00 0.00 0.00 4.93
2803 2927 0.387565 GAAAGAGGAGAGGGCTAGCG 59.612 60.000 9.00 0.00 0.00 4.26
2804 2928 0.756294 GGAAAGAGGAGAGGGCTAGC 59.244 60.000 6.04 6.04 0.00 3.42
2805 2929 1.419381 GGGAAAGAGGAGAGGGCTAG 58.581 60.000 0.00 0.00 0.00 3.42
2806 2930 0.031010 GGGGAAAGAGGAGAGGGCTA 60.031 60.000 0.00 0.00 0.00 3.93
2807 2931 1.307430 GGGGAAAGAGGAGAGGGCT 60.307 63.158 0.00 0.00 0.00 5.19
2808 2932 1.616628 TGGGGAAAGAGGAGAGGGC 60.617 63.158 0.00 0.00 0.00 5.19
2809 2933 1.275421 GGTGGGGAAAGAGGAGAGGG 61.275 65.000 0.00 0.00 0.00 4.30
2810 2934 1.275421 GGGTGGGGAAAGAGGAGAGG 61.275 65.000 0.00 0.00 0.00 3.69
2811 2935 1.275421 GGGGTGGGGAAAGAGGAGAG 61.275 65.000 0.00 0.00 0.00 3.20
2812 2936 1.229853 GGGGTGGGGAAAGAGGAGA 60.230 63.158 0.00 0.00 0.00 3.71
2813 2937 2.309504 GGGGGTGGGGAAAGAGGAG 61.310 68.421 0.00 0.00 0.00 3.69
2814 2938 2.204244 GGGGGTGGGGAAAGAGGA 60.204 66.667 0.00 0.00 0.00 3.71
2815 2939 2.204306 AGGGGGTGGGGAAAGAGG 60.204 66.667 0.00 0.00 0.00 3.69
2816 2940 2.309504 GGAGGGGGTGGGGAAAGAG 61.310 68.421 0.00 0.00 0.00 2.85
2817 2941 2.204244 GGAGGGGGTGGGGAAAGA 60.204 66.667 0.00 0.00 0.00 2.52
2818 2942 3.347590 GGGAGGGGGTGGGGAAAG 61.348 72.222 0.00 0.00 0.00 2.62
2819 2943 3.468458 AAGGGAGGGGGTGGGGAAA 62.468 63.158 0.00 0.00 0.00 3.13
2820 2944 3.895600 AAGGGAGGGGGTGGGGAA 61.896 66.667 0.00 0.00 0.00 3.97
2821 2945 4.364686 GAAGGGAGGGGGTGGGGA 62.365 72.222 0.00 0.00 0.00 4.81
2827 2951 4.098235 TACGGGGAAGGGAGGGGG 62.098 72.222 0.00 0.00 0.00 5.40
2828 2952 2.767073 GTACGGGGAAGGGAGGGG 60.767 72.222 0.00 0.00 0.00 4.79
2829 2953 2.767073 GGTACGGGGAAGGGAGGG 60.767 72.222 0.00 0.00 0.00 4.30
2830 2954 2.767073 GGGTACGGGGAAGGGAGG 60.767 72.222 0.00 0.00 0.00 4.30
2831 2955 2.767073 GGGGTACGGGGAAGGGAG 60.767 72.222 0.00 0.00 0.00 4.30
2832 2956 4.419900 GGGGGTACGGGGAAGGGA 62.420 72.222 0.00 0.00 0.00 4.20
2857 2981 3.452786 TCGCCTCGCTCAGGGAAG 61.453 66.667 0.00 0.00 43.70 3.46
2858 2982 3.760035 GTCGCCTCGCTCAGGGAA 61.760 66.667 0.00 0.00 43.70 3.97
2901 3025 1.700042 ATTAGAAGGGGGAGGCGCTG 61.700 60.000 7.64 0.00 0.00 5.18
2902 3026 1.384643 ATTAGAAGGGGGAGGCGCT 60.385 57.895 7.64 0.00 0.00 5.92
2903 3027 1.071642 GATTAGAAGGGGGAGGCGC 59.928 63.158 0.00 0.00 0.00 6.53
2904 3028 1.755384 GGATTAGAAGGGGGAGGCG 59.245 63.158 0.00 0.00 0.00 5.52
2905 3029 1.427895 GGGGATTAGAAGGGGGAGGC 61.428 65.000 0.00 0.00 0.00 4.70
2906 3030 0.272235 AGGGGATTAGAAGGGGGAGG 59.728 60.000 0.00 0.00 0.00 4.30
2907 3031 1.735926 GAGGGGATTAGAAGGGGGAG 58.264 60.000 0.00 0.00 0.00 4.30
2908 3032 0.271005 GGAGGGGATTAGAAGGGGGA 59.729 60.000 0.00 0.00 0.00 4.81
2909 3033 0.772517 GGGAGGGGATTAGAAGGGGG 60.773 65.000 0.00 0.00 0.00 5.40
2910 3034 1.128188 CGGGAGGGGATTAGAAGGGG 61.128 65.000 0.00 0.00 0.00 4.79
2911 3035 1.769716 GCGGGAGGGGATTAGAAGGG 61.770 65.000 0.00 0.00 0.00 3.95
2912 3036 1.755384 GCGGGAGGGGATTAGAAGG 59.245 63.158 0.00 0.00 0.00 3.46
2913 3037 1.755384 GGCGGGAGGGGATTAGAAG 59.245 63.158 0.00 0.00 0.00 2.85
2914 3038 2.138179 CGGCGGGAGGGGATTAGAA 61.138 63.158 0.00 0.00 0.00 2.10
2915 3039 2.523412 CGGCGGGAGGGGATTAGA 60.523 66.667 0.00 0.00 0.00 2.10
2916 3040 2.842936 ACGGCGGGAGGGGATTAG 60.843 66.667 13.24 0.00 0.00 1.73
2917 3041 2.841044 GACGGCGGGAGGGGATTA 60.841 66.667 13.24 0.00 0.00 1.75
2946 3070 4.473520 ACGAGCAAGGCCCGATGG 62.474 66.667 0.00 0.00 0.00 3.51
2947 3071 3.197790 CACGAGCAAGGCCCGATG 61.198 66.667 0.00 0.00 0.00 3.84
2948 3072 3.706373 ACACGAGCAAGGCCCGAT 61.706 61.111 0.00 0.00 0.00 4.18
2949 3073 4.680237 CACACGAGCAAGGCCCGA 62.680 66.667 0.00 0.00 0.00 5.14
2951 3075 4.643387 ACCACACGAGCAAGGCCC 62.643 66.667 0.00 0.00 0.00 5.80
2952 3076 3.357079 CACCACACGAGCAAGGCC 61.357 66.667 0.00 0.00 0.00 5.19
2953 3077 4.030452 GCACCACACGAGCAAGGC 62.030 66.667 0.00 0.00 0.00 4.35
2954 3078 3.357079 GGCACCACACGAGCAAGG 61.357 66.667 0.00 0.00 0.00 3.61
2978 3102 3.744719 GAGAAAAACCGGGCCGCC 61.745 66.667 23.20 0.00 0.00 6.13
2979 3103 3.744719 GGAGAAAAACCGGGCCGC 61.745 66.667 23.20 5.50 0.00 6.53
2980 3104 3.060000 GGGAGAAAAACCGGGCCG 61.060 66.667 21.46 21.46 0.00 6.13
2981 3105 3.060000 CGGGAGAAAAACCGGGCC 61.060 66.667 6.32 0.00 46.08 5.80
2986 3110 3.045492 TCGCGCGGGAGAAAAACC 61.045 61.111 31.69 0.00 0.00 3.27
2987 3111 2.172659 GTCGCGCGGGAGAAAAAC 59.827 61.111 31.69 14.40 0.00 2.43
2988 3112 3.408020 CGTCGCGCGGGAGAAAAA 61.408 61.111 31.69 4.34 36.85 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.