>input_sequence_63191
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-----------------ATGTCGATCGCAAGATTCAGCTGTACTACTCACCTAGCCACCCTACACACGCTCGGAGCAACG
CGGCAGATAACCAGACGCCTTCTCGCCAAGATGAGCCAGGGGCAGCAGAGGAGGCCGTCGTCCGATCAAGCCCAGGCGGG
CGGCGGCGGGCAGGGCCAGGGACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCCGGCCGTGACCGGCGGCCTCG
CGGAGAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCGGCCGAGAACCTCGTGTTCGGGGAGACGATCAAGGGC
GGGCCGGCGGCAGCCATGCAGTCCGCGGCCATGCGCAACGAGCGCATGGGCGTCGTCGGCCACGACCAGGCCACGGACGC
CACCACCGAGCAGGGCGTCTCCGTGTCCGAGACCCGCATCCCCGGCGGGCGCATCGTCACCGAGTTCGTCGCCGGGCAGG
CCGTCGGCCAGTACCTCGCGCCGGATGATGCCGCCGATGCAGGCGGAGCCGGTGGCGACGACACGAAGATAACGATCGGC
GAGGCGCTGGAGGCGGCAGGTTACGCGGCAGGAGGCAGGCCGGTGGAGCGCAGCGACGCGGCGGCCATCCAGGCGGCCGA
AGTGCGAGCCACCGGGCTGGACGTCAATATCCCCGGGGGCCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACGCCT
GGGCCGCGCGCGACGATGAGAAGGCCAAGCTCGGCGACGTGCTCTCGGTATGTCTCTAGCATGTCATGCACATCGATGCT
ACCAGTACACGTATCCTTGAATCCAT-GATGTTACTGACGAC------------GATGGTCGACCCGCGTGCATGCAGAA
TGCGCCGGCAAAGCTG------------------------------------GTCGCGGACAAGGAGGTGGAGGCCGACG
ACGCGGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGACGACAAGACGGTGAGGCCGGGAGGGATAGCAGCGTCCGTG
GCTGCGGCGGCGCGGCTCAACAAGCAGGGCGCATAG--------------------------------------------
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>chr4D_1_TraesCS4D01G273900
TATATTGTACGGATGAATATTACGTGATACCATGACTTGTATGCTTCCAAGATACCAATTTGAAGAGGTCAAATTTAAAT
CCATTTTTTATGAATGTTTACAAT-CATGTGCCTACAATCCCTAGAAATTTCGGATCAAAATTCGAAGTACACAAAGAAA
AAAAACAAATTCAA--------CATAATAGTATCAATAAAGACAAATGCATGAGTAGTGTCAAAACCTGAGTGCGGCTAT
TTGGCTCACAAGCTCATCTACTCTCGACATGAACAGTAAATTCAAAACAAATATTAGAAAACTTAAAAAAGTCCATTTTT
TGCATGAAT---GATGTTTCGGTGCGTGAGGTCCGCTTCAAATTTCAATTCAGTTGGACATCTAAGTAGCTCTCAACAAA
AAAGACAACATGTACTGTTGTGACCCAATTTGTAGAGCTACTCAGATGTTCAAATAAACTGAAATACCGAAGCATCGTTC
ATACATTTT-----TTTTTCTGATTTTAGATTTTT-TTGAATTTACTGTTCACTGGGG-CAGATGAGTCCGGACTCATAA
ATGAATATTCGGTGAAAACCTACACTATTTACATCCGTTTATATATT--TTTGTTTCTTTATGTGTGCTTTGATTTTGAT
CTGAA-TTTCTTAGGACATGTAGACATATGCCTTGTGAACATCCTCAATTTTTTCGGAATTTTTCAAAACATTTATGTTT
GACGTTTTAAGATCGGTATCATGAGAGCATATAAAAGGTAGTATCACACGATATTTTTCATATATTATAGTAGTAGTGTA
TTAAG-----------------------------------AAAAAACAAGCGCCACCGCTTTGCTGACCACGCGCGCGCC
ACTCCATGTTGCCTCCGCCGTCCAACCCTCCACCGCTTCTTCGGGCGCCGCCTGGCGGCAAAGCCACGACGCGCCTCCCC
TGCTTCGCCTCCACGTCTCCGCCCTCTCCCACACCTGTCTCCCTGTGAGCACTCGCGCACGCCCTATATAACCACCATAT
CCACGCATGATCCATCCATGTCGATCGCAAGATTCAGCTGTACTACTCACCTAGCCACCCTACACACGCTCGGAGCAACG
CGGCAGATAACCAGACGCCTTCTCGCCAAGATGAGCCAGGGGCAGCAGAGGAGGCCGTCGTCCGATCAAGCCCAGGCGGG
CGGCGGCGGGCAGGGCCAGGGACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCCGGCCGTGACCGGCGGCCTCG
CGGAGAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCGGCCGAGAACCTCGTGTTCGGGGAGACGATCAAGGGC
GGGCCGGCGGCAGCCATGCAGTCCGCGGCCATGCGCAACGAGCGCATGGGCGTCGTCGGCCACGACCAGGCCACGGACGC
CACCACCGAGCAGGGCGTCTCCGTGTCCGAGACCCGCATCCCCGGCGGGCGCATCGTCACCGAGTTCGTCGCCGGGCAGG
CCGTCGGCCAGTACCTCGCGCCGGATGATGCCGCCGATGCAGGCGGAGCCGGTGGCGACGACACGAAGATAACGATCGGC
GAGGCGCTGGAGGCGGCAGGTTACGCGGCAGGAGGCAGGCCGGTGGAGCGCAGCGACGCGGCGGCCATCCAGGCGGCCGA
AGTGCGAGCCACCGGGCTGGACGTCAATATCCCCGGGGGCCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACGCCT
GGGCCGCGCGCGACGATGAGAAGGCCAAGCTCGGCGACGTGCTCTCGGTATGTCTCTAGCATGTCATGCACATCGATGCT
ACCAGTACACGTATCCTTGAATCCAT-GATGTTACTGACGAC------------GATGGTCGACCCGCGTGCATGCAGAA
TGCGCCGGCAAAGCTG------------------------------------GTCGCGGACAAGGAGGTGGAGGCCGACG
ACGCGGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGACGACAAGACGGTGAGGCCGGGAGGGATAGCAGCGTCCGTG
GCTGCGGCGGCGCGGCTCAACAAGCAGGGCGCATAGGCAGGCCTCTGCCTTGCGCGTACGTACGCGGCGTGT--------
GCCAGTGGTTTGCGGGTGCAGGCCGCCGGCTGCTTGAGTTTAGCGTGCCCTTTTGCTTGAAGCGTCACTCTCCTTCGTAC
CAGCGTCTAGTTCTCGTACTTCTAGCTTTACCCGCGTCTTAGTTTCCGTAGTTCTAGTGCTTTTAGCTTAGTTGAAGTGT
T-CTTGTGCTTCTAGCTT--GGTTGAAGTCGAGTCTTA--AAACTTTTTGTAAAAATGT---ATAATTCCACTGCTATCT
CAAGTCTTAAA-CTTCTTGTAAAAATGTTATTTCACCAAATCGGAGGAGTACCTTTTTTCCATTTCCCTTATTTGCTCGA
GAACAAAAAAGTGCAAATTTCCATTTCCCTTATTTCCTCGAGAACAAGAAAGTGCAAATTGCAAAATAAGAAAATGTTAC
ATGCATACAAATAGTGAGTGTAATTGCAGTGTATTATACGACAAAAAACGGGAAATGTGATTAAGCTGTTCAATACGGGT
TCTGATTACGGTGTTTAGTTTGCTCCTTTAATTAGCTGCTGCGGGGCTGCAGTTGGCGATAATCCTAGATCCGAGGCAAC
TCGATCCAAAGACCCGCTAGGGTTCCCCCCAGCGGCCGAGGTGCACCCCGACCCGTCCCGCTAGCCCGCCCCTTCCCCCC
AGTGTCGTCTCCATGAGCGGGCCGGCGCGTGCACCCTGACCCGTCCCGCTAGCCCTCTCCCCCTTCCCACACACCCTCCC
TTCGGGGCCTCCCCGAGCGGGCCGGCGCGTGCACCCTGACCCGTCTCGCTAGCCCTCTCCTCTTTCCCCACCCCCTCCCT
TCCCCGTACCCCCCGCGTCGCTTCCCTGAGCGAGGCGACCGTGGGCTCCCCTTCCCGCCTCCCCCAGCGCCTCCCCCTTC
TAATCCCCTCCCGCCGTCGCTGGCGTAGGCCATCGGGCCTTGCTCGTGTGGTGCCCGCGGCGGCGGCCCGGTTTTTCTCC
CGCGCGACGCTGC
>chr4B_1
TATATTGTACGGATGAATATTAGGTGACACCATGACTTGTATGCTTCCATGATACCAATTTTAAAAGGTCAAATTAAAAT
CCCTTTTTTATGAATGTTTACAACACATGTGTCTACAATCCCTAGAAATTTCGGATTAAAATTCGAAGTACACAAAGAGA
AACAACAAAAAAAAAAATTCGGCATAATAGTATAAATAAAGACAAATGCATGAATAGTATCAAAACCTGAGTGCGGCTAT
TTGGCTCACAAACTCATCTGCTCTCGCTGTGAACAGTAAATTCGAATCAAATACTAGAAAACTTTAAAAAATTCTAATTT
TTTTCCATGGAAGATGTTTCAGTGTGTGATGTCCGCTCCAAATTTCAGTTCATCCGAACATCTGAGTAGTTCGCAGCAAA
GAAGACAA---------------------------AGCTACTCAAATGTCCAAATAAGTTGAAATACTCAAGCATCATAA
TATAAAGAATAAGATTTTTCTCATTTTAAATTTTACTTAAATTTACTGTTCACTATGTACAGATGAGTCCGGACGCAGAA
ATGAATATTCGGACAAAACCTGTACTAATTACATCCGTTTATATATATATTTGTTTCTTTATGTGTACTTTGAATTTTGA
TGTGATTTTCTTAGGACATGTAGACATATGCCTTGTGAACATCCTCAATTAAATACATGCCATGTAAGC-----------
-------------------------------------------------------------AAATTTTTCTTAGAATGTG
TTATGTTACTTGCTAAGTTACTTCCATTCTGAGCAGCCTAAAAAAACAAGCGCCACCGCTTTGCTGTCCACGCGCGCGCC
ACTCCACGCTGCCTCCGCCGTCCAACCCTCCACCGCCTCCTCGCGCGCCACCTGGCGGCAAAGCCACGACGCGCCTCCCC
TGCTTCGCCTCCACGTCTCCGCCCACTCCCACACCTGTCTCCCTGTGGGCAGTCGCGCACGCCTTATATAATG--CATAT
CCACACACGGTCCCTCCATGTCGATCGCAAGATTCAGCTGTACTACTCACCTAGCCACCCTACACACGCTCGGAGCAACG
CGGCAGATAACCAGACGCCTTCTCGGCAAGATGAGCCAGGGGCAACAGAGGAGGCCGTCGTCAGACCAAGCCCAGGCGGG
CGGCGGCGGGCAGGGCCAGGGACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCCGGCCGTGACCGGCGGCCTCG
CGGAGAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCGGCCGAGAACCTCGTTTTCGGGGAGACGATCAAGGGC
GGGCCGGCGGCAGCCATGCAGTCCGCGGCCATGCGGAACGAGCGCATGGGCCTCGTCGGCCACGACCAGGCCACGGACGC
CACCGCCGAGCAGGGTGTCTCCGTGTCCGAGACCCGCGTCCCCGGCGGGCGTATCGTCACCGAGTTCGTCGCCGGGCAGG
CCGTGGGCCAGTACCTCGCGCCGGATGATGCCGCCGATGCAGGCGGAGCCGGTGGCGACGACACGAAGATAACTATCGGC
GAGGCGCTGGAGGCGGCAGGTTACTCGGCCGGAGGCAGGCCGGTGGAGCGCAGCGACGCGGCGGCCATCCAGGCGGCCGA
AGTGCGGGCCACCGGGCTGGACGTCAATATCCCTGGTGGCCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACGCCT
GGGCCGCGCGCGACGATGAGAAGGCCAAGCTCGGCGACGTGCTCTCGGTATGTCTCTAGCATGTCATGCACATCGATGCT
ACCAGTACACGTATCCTTGAATCCAT-GATGTTACTGACGAC------------GATGGTCGACCCGCGTGCATGCAGAA
TGCGACGGCGAAGCTG------------------------------------GTTGCGGACAAGGAGGTGGAGGCCGACG
ACGCGGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGATGACAAGACGGTGAGGCCGGGAGGGATAGCAGCGTCCGTG
GCTGCGGCGGCGCGGCTCAACAAGCAGGGCGCATAGGCAGGCCTCTGCCGTGCGCGTACGTACGCGGCGTGTCCGCGTGT
GCGAGTGGTTTGCGGGTGCAGGCCGCCGGCTGCTCGAGTTTAGCGTGCCCTTTTGCAAGAAGTGTCAGTGTCCTTCGTAC
CAGCGTCTAGTTCTCGTGCTTCTAGCTTTACCCGCGTCTTAGTTTCCGTAGTTCTAGTGCTTTTAGCTTAATA-AAGTGT
T-CTTGTGCTTCTAGCTTTTGGTTGAAGTCAAGTCTTA--GAACTTGTTGTAAAAATGTG---TAATTCCGCTGCTATCT
CTAGTTTTAAAACTTCTTGTAAAAATGTTATTCCGCCAAATCGGAGGAGTACCCTTTTCC--TTTCCCTTATTTCCTCGA
GAACAAAGAAGCACAAATT-------------------------------------------------------------
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>chr4A_753
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------------------------------------------------------TTTTCATATATTTTACTAGTAGTGTG
TTAAG-----------------------------------AAAAAACAAGCGCCACCGCTTTGCAGACCACGCGCGCGCC
ACTCCACGCTGCCTCCGCCGTCCAACCCTCCACCGCTTCCTCGCGCGCCACCTCACGGCAAAGCCGCGACGCGCCTCCCC
TCCTTCGCCTCCACGTCTCCGCCCTCTCCCACACCTGTCTCCCTGTGAGCACCCACCCACGCCGTATATAACCACCATAC
CCACGCATGATCCATCCATGTCGATCGCAAGATTCAGCTGTACTACTCACCTAGCCACCCTACACACGCTCGGGGCAACG
CGGCAGATAACCAGACGCCTTCTCGCCAAGATGAGCCAGGGGCAGCAGAGGAGGCCGTCGTCCGACCAAGCCCAGGCGGG
CGGCGGCGGGCAGGGCCAGGGACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCCGGCCGTGACCGGCGGCCTCG
CGCAGAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCAGCCGAGAACCTCGTGTTCGGGGAGACGATAAAGGGC
GGCCCGGCGGCCACCATGCAGTCCGCGGCCATGCGCAACGAGCGCATGGGCGTGGTCGGCCACGACCAGGCCACGGACGC
CACCGCCGAGCAGGGCGTCTCCGTCTCCGAGACCCGCGTCCCCGGCGGGCGCATCGTCACCGAGTTCGTCGCCGGACAGG
CCGTGGGCCAGTACCTCGCGCCTGATGATGCCGCCGATGCAGGTGAAGCCGGTGGCGACGACACGAAGATAACTATTGGC
GAGGCGCTGGAGGCGGCAGGTTACGCGGCGGGAGGCAGGCCGGTGGAGCGCAGCGACGCAGCGGCCATCCAGGCGGCCGA
AGTGCGAGCCACCGGGCTGGACGTCAATATCCCTGGTGGCCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACGTCT
GGGCCGCGCGAGACGAGGAGAAGGCCAAGCTCGGCGACGTGCTCTCGGTATGTCTGTAGTATGTCCTGCACATCGACGCT
ACCAGTACACATATGCTTGAATCCTTTGATGTTACTGACTGCGATGGTCAACCTGGTGGTCGACCTGCGTGCACGCAGAA
TGCAACGGCGAAGCTG------------------------------------GTTGCGGACAAGGAGGTGGAGGCCGCCG
ACGCGGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGACGACAAGACGGTGAGGCCGGGAGGGATAGCAGCGTCCGTG
GCTGCGGCGGCGCGGCTCAACAAGCAGGGCGCATAGGCAGGCCTCTGCCGTGCGCGTACGTACGCGGCGTGT--------
GCCAGTGGTTTGCGGGTGCAGGCCGCCGGCTGCTCGAGTTTAGCGTGCCCTTTTGCATGAAGTGGCACTCTCCTTCGTAC
CAGCGTCTGGTTCTCGTGCTTCTAGCTTTACCCGCTTCTTAGTTTCAGTAGTTCTAGTGCTTTTAGCTTAGTTGAAGTGT
TTCTTGTGCTTCTAGCTT--GGTTGAAGTCAAGTCTTCTCAAGCTTTTTGTAAAAATGTATAATAATTCCACTGCTATCT
CAAGTCTTAAA-CTTCTTGTAATAATGTTATTTCACCAAATCGGAGGAGTACCTTTTCTTTATTTCCCTTCTTTGCTCGA
GAACAAAAAAGTGCAAATTTTCATTTCCTTA--TTCCTTGAGAACAAAAAAG----------------------------
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>chr4A_893
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---------------------------------------------------------------------CGCGCCTCCCC
TGCTTCGCCTCCACG---------TCTCCCACACCTGTCTCCCTATGAGCACCCACGCACGCCGTATATAACCACCATAA
CCACACATGATCCATC-------------------------------------------------ACGCTCGGGGCAACG
CGGCTGATAACCAGACGCCTTCTCGCTAAGATGAGCCAGGGGCAGCAGAGGAGGCCGTCGTCTGACCAAGCCCAGGCGGA
CGGCGGCGGGCAGAGCCAGGAACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCTGGCCGTGACCGGCGGCCTCG
CGGAGAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCGGCGGAGAACCTCGTGTTCGGGGAGACGATCAAGGGC
GGGCCGGCGGCCACCATGCAGTCCGCGGCCATGCGGAACGAGCGCATGGGCGTCGTCGGCCACGACCAGGCCACGGACGC
CACAGCCGAGCAGGGCGTCACCGTGTCCGAGACCTGCGTCCCCGGCGGACGCATCGTCACCGAGTTCGTCGCCGGGCAGG
TCGTCAGCCAGTACCTCGCGCCGGATGGTGCCGACCCTGCTAGGGGAGCCGCTGGCGACGATACGAAGATGACAATCGGT
GAGGCGCTGGAGGCGGCAGGTTATGCTGCAGGAGACAGGCCGGTGGAGCACAGCGACGCGGCGGCCATCCAGGCGGCCAA
AGTGAGAGCCACCGGGCAGGACGTCTATATCCCCGGGGATCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACCTCT
GGGCCGCGCGCGACGAGGAGAAGGCCAAGCTCGGTGAAGTGCTCTCGGTATGTCTGTAGTATGTCCCGCACATCGACGCT
ACCAGTACACATATGCTTGAATCCTT-GATGTCACTGACGACGATGGTCAACCTGATGGTCGACCTGCGTGCACGCAGAA
TGCGACGGCGAAGCTGGTTGCCCACAAGGAGCGGAATGCGACGGCGAAGCTGGTTGCGGACAAGGAGGTGGAGTCCGACG
ACGCGGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGACGACAAGACGGTGAGGCCGGGAGGGATAGCGGCGTCCGTG
GCTGCGGCCGCGCGGCTCAACAAGCAGGACGCATAGGCAGGCCTCTGCC---------------------GT--------
GCCAGTGGTTTGCGGGTGCCGGCCGCCGGCCGCTCGAGTTTAGCGTGTCCTTTCGCATGAAGGATCACTCTCCTTCGTGC
CAGCATCTAGTTCTCGCGCTTCTAGCA-TACCAGCGTCTTAGTTTCTGTAGTTCTAGTGCTTCTAGCTTAGTTGAAGTG-
TTCTCGTGCTTGTAGCTT--ACTTGAAGTCAAGTCTTA--AA-CTTACTGTAAAAA--TG---TAATTCCACTGCTATCG
CAA-----------------------------------------------------------------------------
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>SNPs
----------------------S----S---------------------S-----------S--S----------S----
--S--------------------S-------S------------------------S---------------------S-
--S------SSS---------------------S-------------------S----S---------------------
-----------S-------S------SSS--------------S--S------S----------S-----S-S-SSS---
-SSSSS-SS-----------S---S----S-------S---------S----SSS-S------S-----S--S--S----
S-------SSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----S-------SS--------SS-------S-SS
SSSS-SSSS------------S------S-----S---S---------------SS-S----------------S--S--
------------SS-------SS----S------------------S-------------------S------S---SSS
SSSS----------------------------------------------SSS-SSSSSSSS-SS--SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S--S---------S
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------S-S------------------------------S---S-----S------------------------------
---------------------------------------------------------------S----------------
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----S--------------------------------S------------------------------------------
-------------------------------------------------------------------------S------
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----S----S--------------------------------------------S-------------------------
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-------------------------------------------------S------------------------------
----------------------------------S---------------------S-----S-----------------
-----------------S--------------------------------------------------------------
------------------------------S-------------------------------------------------
------------------------------------------------------------S-------------------
--------------------S-------S-SSS-----S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_252
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------------------------------------------------------------------------GCGGCTAT
TTGGCTCACAAG--------------------------------------------------------------------
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>reverse_2258
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-----------------ACTTCTAGCTTTACCCGCGT-------------------------------------------
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