Multiple sequence alignment - TraesCS4D01G273800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G273800 chr4D 100.000 2149 0 0 1 2149 443743355 443741207 0.000000e+00 3969
1 TraesCS4D01G273800 chr4D 100.000 214 0 0 2408 2621 443740948 443740735 1.890000e-106 396
2 TraesCS4D01G273800 chr4D 86.232 276 34 3 352 624 498774531 498774805 1.970000e-76 296
3 TraesCS4D01G273800 chr4B 95.625 1417 45 7 641 2054 553339226 553337824 0.000000e+00 2257
4 TraesCS4D01G273800 chr4B 89.685 349 27 5 1 342 553339574 553339228 1.110000e-118 436
5 TraesCS4D01G273800 chr4B 83.333 228 18 9 2408 2619 553337530 553337307 2.660000e-45 193
6 TraesCS4D01G273800 chr4B 91.358 81 6 1 2061 2140 553337655 553337575 2.760000e-20 110
7 TraesCS4D01G273800 chr4A 91.247 1508 53 21 649 2128 24105750 24107206 0.000000e+00 1980
8 TraesCS4D01G273800 chr4A 89.767 215 14 6 2408 2621 24107250 24107457 4.300000e-68 268
9 TraesCS4D01G273800 chr3D 86.159 289 35 2 353 639 415715954 415715669 9.110000e-80 307
10 TraesCS4D01G273800 chr3D 83.630 281 40 5 352 629 94642480 94642757 2.590000e-65 259
11 TraesCS4D01G273800 chr7B 85.159 283 36 5 353 633 607190896 607190618 4.270000e-73 285
12 TraesCS4D01G273800 chr7B 83.333 288 36 11 352 634 667195743 667195463 3.350000e-64 255
13 TraesCS4D01G273800 chr7D 84.965 286 36 5 352 633 602823975 602823693 1.540000e-72 283
14 TraesCS4D01G273800 chr7D 83.916 286 41 3 352 635 169916873 169917155 4.300000e-68 268
15 TraesCS4D01G273800 chr3A 84.838 277 35 6 352 624 618001809 618001536 3.320000e-69 272
16 TraesCS4D01G273800 chr5A 83.557 298 35 11 345 635 476341033 476341323 1.550000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G273800 chr4D 443740735 443743355 2620 True 2182.5 3969 100.00000 1 2621 2 chr4D.!!$R1 2620
1 TraesCS4D01G273800 chr4B 553337307 553339574 2267 True 749.0 2257 90.00025 1 2619 4 chr4B.!!$R1 2618
2 TraesCS4D01G273800 chr4A 24105750 24107457 1707 False 1124.0 1980 90.50700 649 2621 2 chr4A.!!$F1 1972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 436 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.0 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1668 0.25064 AAGTGTTGAGCTCTGCAGGG 60.251 55.0 15.13 12.7 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.902684 GGATATAAGGATCATCATGAATGACTT 57.097 33.333 0.00 7.61 47.00 3.01
36 37 7.747155 AAGGATCATCATGAATGACTTCATC 57.253 36.000 0.00 0.00 46.83 2.92
65 66 2.490902 GGCCTTCCCCCAAACCTATATG 60.491 54.545 0.00 0.00 0.00 1.78
80 81 6.959606 ACCTATATGTTTGCAGGAGGATAT 57.040 37.500 0.00 0.00 32.25 1.63
83 84 7.667219 ACCTATATGTTTGCAGGAGGATATTTG 59.333 37.037 0.00 0.00 32.25 2.32
118 119 4.832248 CACTTGGATTACCTACAGAGCAA 58.168 43.478 0.00 0.00 37.04 3.91
134 135 3.386402 AGAGCAACTACTATGGAGGCTTC 59.614 47.826 0.00 0.00 0.00 3.86
176 177 7.492020 GCATTCAAATAATTGACATGGCAGTTA 59.508 33.333 17.81 17.81 45.01 2.24
210 211 7.254227 TGTTGTACAGAACATTTTGTACCTC 57.746 36.000 17.88 12.81 45.64 3.85
213 214 9.048446 GTTGTACAGAACATTTTGTACCTCTTA 57.952 33.333 17.88 2.21 45.64 2.10
241 245 7.024171 TGAAAATCGATAAAAATACGCAGCAA 58.976 30.769 0.00 0.00 0.00 3.91
246 250 5.120986 TCGATAAAAATACGCAGCAAAGTCA 59.879 36.000 0.00 0.00 0.00 3.41
270 274 6.976934 TGCAGTTTCCCTTAAGAAAAATCT 57.023 33.333 3.36 2.52 37.49 2.40
284 288 9.953565 TTAAGAAAAATCTAATCCTCCTCGAAA 57.046 29.630 0.00 0.00 0.00 3.46
313 321 8.503428 AGACAATCTAATCTATGAACCTGGAT 57.497 34.615 0.00 0.00 0.00 3.41
331 339 9.981114 AACCTGGATAATCTTTTAGTTTTGTTG 57.019 29.630 0.00 0.00 0.00 3.33
348 356 8.141909 AGTTTTGTTGGATAAGAAAAGTAAGGC 58.858 33.333 0.00 0.00 39.50 4.35
349 357 7.589958 TTTGTTGGATAAGAAAAGTAAGGCA 57.410 32.000 0.00 0.00 0.00 4.75
350 358 7.775053 TTGTTGGATAAGAAAAGTAAGGCAT 57.225 32.000 0.00 0.00 0.00 4.40
351 359 7.391148 TGTTGGATAAGAAAAGTAAGGCATC 57.609 36.000 0.00 0.00 0.00 3.91
352 360 6.093495 TGTTGGATAAGAAAAGTAAGGCATCG 59.907 38.462 0.00 0.00 0.00 3.84
353 361 5.984725 TGGATAAGAAAAGTAAGGCATCGA 58.015 37.500 0.00 0.00 0.00 3.59
354 362 6.411376 TGGATAAGAAAAGTAAGGCATCGAA 58.589 36.000 0.00 0.00 0.00 3.71
355 363 6.315393 TGGATAAGAAAAGTAAGGCATCGAAC 59.685 38.462 0.00 0.00 0.00 3.95
356 364 6.238402 GGATAAGAAAAGTAAGGCATCGAACC 60.238 42.308 0.00 0.00 0.00 3.62
357 365 4.015872 AGAAAAGTAAGGCATCGAACCA 57.984 40.909 10.20 0.00 0.00 3.67
358 366 4.394729 AGAAAAGTAAGGCATCGAACCAA 58.605 39.130 10.20 0.00 0.00 3.67
359 367 4.215613 AGAAAAGTAAGGCATCGAACCAAC 59.784 41.667 10.20 7.65 0.00 3.77
360 368 2.109425 AGTAAGGCATCGAACCAACC 57.891 50.000 10.20 0.00 0.00 3.77
361 369 1.628846 AGTAAGGCATCGAACCAACCT 59.371 47.619 10.20 0.50 0.00 3.50
362 370 1.737793 GTAAGGCATCGAACCAACCTG 59.262 52.381 10.20 0.00 0.00 4.00
363 371 0.110486 AAGGCATCGAACCAACCTGT 59.890 50.000 10.20 0.00 0.00 4.00
364 372 0.606401 AGGCATCGAACCAACCTGTG 60.606 55.000 10.20 0.00 0.00 3.66
378 386 3.524095 ACCTGTGGTTGGATGATTTGA 57.476 42.857 0.00 0.00 27.29 2.69
379 387 3.424703 ACCTGTGGTTGGATGATTTGAG 58.575 45.455 0.00 0.00 27.29 3.02
380 388 2.756760 CCTGTGGTTGGATGATTTGAGG 59.243 50.000 0.00 0.00 0.00 3.86
381 389 2.756760 CTGTGGTTGGATGATTTGAGGG 59.243 50.000 0.00 0.00 0.00 4.30
382 390 2.378208 TGTGGTTGGATGATTTGAGGGA 59.622 45.455 0.00 0.00 0.00 4.20
383 391 3.019564 GTGGTTGGATGATTTGAGGGAG 58.980 50.000 0.00 0.00 0.00 4.30
384 392 2.649312 TGGTTGGATGATTTGAGGGAGT 59.351 45.455 0.00 0.00 0.00 3.85
385 393 3.019564 GGTTGGATGATTTGAGGGAGTG 58.980 50.000 0.00 0.00 0.00 3.51
386 394 3.562176 GGTTGGATGATTTGAGGGAGTGT 60.562 47.826 0.00 0.00 0.00 3.55
387 395 3.354948 TGGATGATTTGAGGGAGTGTG 57.645 47.619 0.00 0.00 0.00 3.82
388 396 2.912295 TGGATGATTTGAGGGAGTGTGA 59.088 45.455 0.00 0.00 0.00 3.58
389 397 3.524789 TGGATGATTTGAGGGAGTGTGAT 59.475 43.478 0.00 0.00 0.00 3.06
390 398 4.721274 TGGATGATTTGAGGGAGTGTGATA 59.279 41.667 0.00 0.00 0.00 2.15
391 399 5.370584 TGGATGATTTGAGGGAGTGTGATAT 59.629 40.000 0.00 0.00 0.00 1.63
392 400 5.936956 GGATGATTTGAGGGAGTGTGATATC 59.063 44.000 0.00 0.00 0.00 1.63
393 401 5.296151 TGATTTGAGGGAGTGTGATATCC 57.704 43.478 0.00 0.00 34.64 2.59
400 408 1.903183 GGAGTGTGATATCCCTAGCCC 59.097 57.143 0.00 0.00 0.00 5.19
401 409 2.609747 GAGTGTGATATCCCTAGCCCA 58.390 52.381 0.00 0.00 0.00 5.36
402 410 2.300437 GAGTGTGATATCCCTAGCCCAC 59.700 54.545 0.00 0.00 0.00 4.61
403 411 1.348036 GTGTGATATCCCTAGCCCACC 59.652 57.143 0.00 0.00 0.00 4.61
404 412 1.061735 TGTGATATCCCTAGCCCACCA 60.062 52.381 0.00 0.00 0.00 4.17
405 413 1.625818 GTGATATCCCTAGCCCACCAG 59.374 57.143 0.00 0.00 0.00 4.00
406 414 1.280457 GATATCCCTAGCCCACCAGG 58.720 60.000 0.00 0.00 39.47 4.45
422 430 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
423 431 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
424 432 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
425 433 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
426 434 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
427 435 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
428 436 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
429 437 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
430 438 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
431 439 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
432 440 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
433 441 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
434 442 2.288666 TCCTGGTGCTCGCATTTATTC 58.711 47.619 0.00 0.00 0.00 1.75
435 443 1.334869 CCTGGTGCTCGCATTTATTCC 59.665 52.381 0.00 0.00 0.00 3.01
436 444 2.292267 CTGGTGCTCGCATTTATTCCT 58.708 47.619 0.00 0.00 0.00 3.36
437 445 2.016318 TGGTGCTCGCATTTATTCCTG 58.984 47.619 0.00 0.00 0.00 3.86
438 446 1.334869 GGTGCTCGCATTTATTCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
439 447 2.288666 GTGCTCGCATTTATTCCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
440 448 2.880890 GTGCTCGCATTTATTCCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
441 449 3.316308 GTGCTCGCATTTATTCCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
442 450 3.953612 TGCTCGCATTTATTCCTGGATTT 59.046 39.130 0.00 0.00 0.00 2.17
443 451 5.008613 GTGCTCGCATTTATTCCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
444 452 5.769662 TGCTCGCATTTATTCCTGGATTTAT 59.230 36.000 0.00 0.00 0.00 1.40
445 453 6.265196 TGCTCGCATTTATTCCTGGATTTATT 59.735 34.615 0.00 0.00 0.00 1.40
446 454 7.147976 GCTCGCATTTATTCCTGGATTTATTT 58.852 34.615 0.00 0.00 0.00 1.40
447 455 7.653311 GCTCGCATTTATTCCTGGATTTATTTT 59.347 33.333 0.00 0.00 0.00 1.82
450 458 9.410556 CGCATTTATTCCTGGATTTATTTTAGG 57.589 33.333 0.00 0.00 0.00 2.69
457 465 7.817418 TCCTGGATTTATTTTAGGATTTCCG 57.183 36.000 0.00 0.00 42.08 4.30
458 466 6.775629 TCCTGGATTTATTTTAGGATTTCCGG 59.224 38.462 0.00 0.00 42.08 5.14
459 467 6.399639 TGGATTTATTTTAGGATTTCCGGC 57.600 37.500 0.00 0.00 42.08 6.13
460 468 6.133356 TGGATTTATTTTAGGATTTCCGGCT 58.867 36.000 0.00 0.00 42.08 5.52
461 469 7.291566 TGGATTTATTTTAGGATTTCCGGCTA 58.708 34.615 0.00 0.00 42.08 3.93
462 470 7.947890 TGGATTTATTTTAGGATTTCCGGCTAT 59.052 33.333 0.00 0.00 42.08 2.97
463 471 9.457436 GGATTTATTTTAGGATTTCCGGCTATA 57.543 33.333 0.00 0.00 42.08 1.31
466 474 6.759497 ATTTTAGGATTTCCGGCTATATGC 57.241 37.500 0.00 0.00 42.08 3.14
467 475 4.901197 TTAGGATTTCCGGCTATATGCA 57.099 40.909 0.00 0.00 45.15 3.96
468 476 5.435686 TTAGGATTTCCGGCTATATGCAT 57.564 39.130 3.79 3.79 45.15 3.96
469 477 4.307032 AGGATTTCCGGCTATATGCATT 57.693 40.909 3.54 0.00 45.15 3.56
470 478 4.265073 AGGATTTCCGGCTATATGCATTC 58.735 43.478 3.54 0.00 45.15 2.67
471 479 4.009675 GGATTTCCGGCTATATGCATTCA 58.990 43.478 3.54 0.00 45.15 2.57
472 480 4.095483 GGATTTCCGGCTATATGCATTCAG 59.905 45.833 3.54 3.50 45.15 3.02
473 481 3.769739 TTCCGGCTATATGCATTCAGT 57.230 42.857 3.54 0.00 45.15 3.41
474 482 3.044235 TCCGGCTATATGCATTCAGTG 57.956 47.619 3.54 0.15 45.15 3.66
475 483 2.079158 CCGGCTATATGCATTCAGTGG 58.921 52.381 3.54 5.52 45.15 4.00
476 484 2.079158 CGGCTATATGCATTCAGTGGG 58.921 52.381 3.54 0.00 45.15 4.61
477 485 2.289631 CGGCTATATGCATTCAGTGGGA 60.290 50.000 3.54 0.00 45.15 4.37
478 486 3.341823 GGCTATATGCATTCAGTGGGAG 58.658 50.000 3.54 0.00 45.15 4.30
479 487 3.341823 GCTATATGCATTCAGTGGGAGG 58.658 50.000 3.54 0.00 42.31 4.30
480 488 3.008375 GCTATATGCATTCAGTGGGAGGA 59.992 47.826 3.54 0.00 42.31 3.71
481 489 3.784511 ATATGCATTCAGTGGGAGGAG 57.215 47.619 3.54 0.00 0.00 3.69
482 490 1.588239 ATGCATTCAGTGGGAGGAGA 58.412 50.000 0.00 0.00 0.00 3.71
483 491 0.615331 TGCATTCAGTGGGAGGAGAC 59.385 55.000 0.00 0.00 0.00 3.36
484 492 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
485 493 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
486 494 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
487 495 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
499 507 2.863153 ACGTTCCCGTCGACTACG 59.137 61.111 14.70 18.15 46.28 3.51
512 520 4.092771 TCGACTACGAGGTGATTTCAAG 57.907 45.455 0.00 0.00 43.81 3.02
513 521 3.754850 TCGACTACGAGGTGATTTCAAGA 59.245 43.478 0.00 0.00 43.81 3.02
514 522 4.398358 TCGACTACGAGGTGATTTCAAGAT 59.602 41.667 0.00 0.00 43.81 2.40
515 523 4.500837 CGACTACGAGGTGATTTCAAGATG 59.499 45.833 0.00 0.00 42.66 2.90
516 524 5.651530 GACTACGAGGTGATTTCAAGATGA 58.348 41.667 0.00 0.00 0.00 2.92
517 525 6.227298 ACTACGAGGTGATTTCAAGATGAT 57.773 37.500 0.00 0.00 0.00 2.45
518 526 7.348080 ACTACGAGGTGATTTCAAGATGATA 57.652 36.000 0.00 0.00 0.00 2.15
519 527 7.957002 ACTACGAGGTGATTTCAAGATGATAT 58.043 34.615 0.00 0.00 0.00 1.63
520 528 7.869937 ACTACGAGGTGATTTCAAGATGATATG 59.130 37.037 0.00 0.00 0.00 1.78
521 529 5.468072 ACGAGGTGATTTCAAGATGATATGC 59.532 40.000 0.00 0.00 0.00 3.14
522 530 5.106791 CGAGGTGATTTCAAGATGATATGCC 60.107 44.000 0.00 0.00 0.00 4.40
523 531 5.698104 AGGTGATTTCAAGATGATATGCCA 58.302 37.500 0.00 0.00 0.00 4.92
524 532 5.768662 AGGTGATTTCAAGATGATATGCCAG 59.231 40.000 0.00 0.00 0.00 4.85
525 533 5.458891 GTGATTTCAAGATGATATGCCAGC 58.541 41.667 0.00 0.00 0.00 4.85
526 534 5.241064 GTGATTTCAAGATGATATGCCAGCT 59.759 40.000 0.00 0.00 33.74 4.24
527 535 5.472478 TGATTTCAAGATGATATGCCAGCTC 59.528 40.000 0.00 0.00 30.67 4.09
528 536 4.426736 TTCAAGATGATATGCCAGCTCA 57.573 40.909 0.00 0.00 30.67 4.26
529 537 4.004196 TCAAGATGATATGCCAGCTCAG 57.996 45.455 0.00 0.00 30.67 3.35
530 538 3.390311 TCAAGATGATATGCCAGCTCAGT 59.610 43.478 0.00 0.00 30.67 3.41
531 539 3.681593 AGATGATATGCCAGCTCAGTC 57.318 47.619 0.00 0.00 0.00 3.51
532 540 3.241156 AGATGATATGCCAGCTCAGTCT 58.759 45.455 0.00 0.00 0.00 3.24
533 541 3.647113 AGATGATATGCCAGCTCAGTCTT 59.353 43.478 0.00 0.00 0.00 3.01
534 542 3.920231 TGATATGCCAGCTCAGTCTTT 57.080 42.857 0.00 0.00 0.00 2.52
535 543 3.801698 TGATATGCCAGCTCAGTCTTTC 58.198 45.455 0.00 0.00 0.00 2.62
536 544 2.299993 TATGCCAGCTCAGTCTTTCG 57.700 50.000 0.00 0.00 0.00 3.46
537 545 0.610174 ATGCCAGCTCAGTCTTTCGA 59.390 50.000 0.00 0.00 0.00 3.71
538 546 0.392706 TGCCAGCTCAGTCTTTCGAA 59.607 50.000 0.00 0.00 0.00 3.71
539 547 1.202639 TGCCAGCTCAGTCTTTCGAAA 60.203 47.619 10.71 10.71 0.00 3.46
540 548 1.462670 GCCAGCTCAGTCTTTCGAAAG 59.537 52.381 28.26 28.26 37.36 2.62
541 549 2.760374 CCAGCTCAGTCTTTCGAAAGT 58.240 47.619 31.29 15.24 37.31 2.66
542 550 2.478134 CCAGCTCAGTCTTTCGAAAGTG 59.522 50.000 31.29 24.31 37.31 3.16
543 551 2.096516 CAGCTCAGTCTTTCGAAAGTGC 60.097 50.000 31.29 25.65 37.31 4.40
544 552 2.139118 GCTCAGTCTTTCGAAAGTGCT 58.861 47.619 31.29 26.32 37.31 4.40
545 553 2.156697 GCTCAGTCTTTCGAAAGTGCTC 59.843 50.000 31.29 20.92 37.31 4.26
546 554 3.384668 CTCAGTCTTTCGAAAGTGCTCA 58.615 45.455 31.29 18.90 37.31 4.26
547 555 3.384668 TCAGTCTTTCGAAAGTGCTCAG 58.615 45.455 31.29 20.02 37.31 3.35
548 556 3.068165 TCAGTCTTTCGAAAGTGCTCAGA 59.932 43.478 31.29 21.43 37.31 3.27
549 557 3.428198 CAGTCTTTCGAAAGTGCTCAGAG 59.572 47.826 31.29 16.91 37.31 3.35
550 558 2.734079 GTCTTTCGAAAGTGCTCAGAGG 59.266 50.000 31.29 8.65 37.31 3.69
551 559 2.072298 CTTTCGAAAGTGCTCAGAGGG 58.928 52.381 26.36 0.70 0.00 4.30
552 560 0.321671 TTCGAAAGTGCTCAGAGGGG 59.678 55.000 0.00 0.00 0.00 4.79
553 561 0.832135 TCGAAAGTGCTCAGAGGGGT 60.832 55.000 0.00 0.00 0.00 4.95
554 562 0.895530 CGAAAGTGCTCAGAGGGGTA 59.104 55.000 0.00 0.00 0.00 3.69
555 563 1.134965 CGAAAGTGCTCAGAGGGGTAG 60.135 57.143 0.00 0.00 0.00 3.18
556 564 1.208293 GAAAGTGCTCAGAGGGGTAGG 59.792 57.143 0.00 0.00 0.00 3.18
557 565 0.413832 AAGTGCTCAGAGGGGTAGGA 59.586 55.000 0.00 0.00 0.00 2.94
558 566 0.639392 AGTGCTCAGAGGGGTAGGAT 59.361 55.000 0.00 0.00 0.00 3.24
559 567 0.755686 GTGCTCAGAGGGGTAGGATG 59.244 60.000 0.00 0.00 0.00 3.51
560 568 0.339859 TGCTCAGAGGGGTAGGATGT 59.660 55.000 0.00 0.00 0.00 3.06
561 569 0.755686 GCTCAGAGGGGTAGGATGTG 59.244 60.000 0.00 0.00 0.00 3.21
562 570 0.755686 CTCAGAGGGGTAGGATGTGC 59.244 60.000 0.00 0.00 0.00 4.57
563 571 1.043116 TCAGAGGGGTAGGATGTGCG 61.043 60.000 0.00 0.00 0.00 5.34
564 572 1.001760 AGAGGGGTAGGATGTGCGT 59.998 57.895 0.00 0.00 0.00 5.24
565 573 1.144057 GAGGGGTAGGATGTGCGTG 59.856 63.158 0.00 0.00 0.00 5.34
566 574 1.612442 AGGGGTAGGATGTGCGTGT 60.612 57.895 0.00 0.00 0.00 4.49
567 575 1.449601 GGGGTAGGATGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
568 576 1.295423 GGGTAGGATGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
569 577 1.019278 GGGTAGGATGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
570 578 1.635663 GGTAGGATGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
571 579 0.948623 GTAGGATGTGCGTGTGTGCA 60.949 55.000 0.00 0.00 43.95 4.57
577 585 4.345337 TGCGTGTGTGCATTCGTA 57.655 50.000 0.00 0.00 40.62 3.43
578 586 2.149555 TGCGTGTGTGCATTCGTAG 58.850 52.632 0.00 0.00 40.62 3.51
579 587 1.288419 TGCGTGTGTGCATTCGTAGG 61.288 55.000 0.00 0.00 40.62 3.18
580 588 1.966493 GCGTGTGTGCATTCGTAGGG 61.966 60.000 0.00 0.00 34.15 3.53
581 589 1.358725 CGTGTGTGCATTCGTAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
582 590 0.321298 GTGTGTGCATTCGTAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
583 591 0.321210 TGTGTGCATTCGTAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
584 592 0.036765 GTGTGCATTCGTAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
585 593 0.687920 TGTGCATTCGTAGGGGTGAA 59.312 50.000 0.00 0.00 0.00 3.18
586 594 1.280710 TGTGCATTCGTAGGGGTGAAT 59.719 47.619 0.00 0.00 0.00 2.57
587 595 1.670811 GTGCATTCGTAGGGGTGAATG 59.329 52.381 9.87 9.87 37.89 2.67
588 596 1.280710 TGCATTCGTAGGGGTGAATGT 59.719 47.619 14.30 0.00 37.36 2.71
589 597 2.502130 TGCATTCGTAGGGGTGAATGTA 59.498 45.455 14.30 8.70 37.36 2.29
590 598 3.135712 TGCATTCGTAGGGGTGAATGTAT 59.864 43.478 14.30 0.00 37.36 2.29
591 599 3.498397 GCATTCGTAGGGGTGAATGTATG 59.502 47.826 14.30 0.00 37.36 2.39
592 600 2.902705 TCGTAGGGGTGAATGTATGC 57.097 50.000 0.00 0.00 0.00 3.14
593 601 2.112190 TCGTAGGGGTGAATGTATGCA 58.888 47.619 0.00 0.00 0.00 3.96
594 602 2.159014 TCGTAGGGGTGAATGTATGCAC 60.159 50.000 0.00 0.00 0.00 4.57
595 603 2.210116 GTAGGGGTGAATGTATGCACG 58.790 52.381 0.00 0.00 35.91 5.34
596 604 0.618458 AGGGGTGAATGTATGCACGT 59.382 50.000 0.00 0.00 35.91 4.49
597 605 0.732571 GGGGTGAATGTATGCACGTG 59.267 55.000 12.28 12.28 35.91 4.49
598 606 1.448985 GGGTGAATGTATGCACGTGT 58.551 50.000 18.38 0.00 35.91 4.49
599 607 2.623535 GGGTGAATGTATGCACGTGTA 58.376 47.619 18.38 14.09 35.91 2.90
600 608 3.202906 GGGTGAATGTATGCACGTGTAT 58.797 45.455 22.72 22.72 35.91 2.29
601 609 4.373527 GGGTGAATGTATGCACGTGTATA 58.626 43.478 20.58 20.58 35.91 1.47
602 610 4.994852 GGGTGAATGTATGCACGTGTATAT 59.005 41.667 25.81 12.84 35.91 0.86
603 611 5.107104 GGGTGAATGTATGCACGTGTATATG 60.107 44.000 25.81 0.00 35.91 1.78
604 612 5.694458 GGTGAATGTATGCACGTGTATATGA 59.306 40.000 25.81 17.13 35.91 2.15
605 613 6.128822 GGTGAATGTATGCACGTGTATATGAG 60.129 42.308 25.81 0.00 35.91 2.90
606 614 5.405269 TGAATGTATGCACGTGTATATGAGC 59.595 40.000 25.81 15.09 0.00 4.26
607 615 4.584327 TGTATGCACGTGTATATGAGCT 57.416 40.909 25.81 4.38 31.66 4.09
608 616 4.546570 TGTATGCACGTGTATATGAGCTC 58.453 43.478 25.81 14.16 31.66 4.09
609 617 2.119671 TGCACGTGTATATGAGCTCG 57.880 50.000 18.38 0.00 31.66 5.03
610 618 0.778815 GCACGTGTATATGAGCTCGC 59.221 55.000 18.38 0.00 0.00 5.03
611 619 1.045477 CACGTGTATATGAGCTCGCG 58.955 55.000 7.58 0.00 39.24 5.87
612 620 0.661552 ACGTGTATATGAGCTCGCGT 59.338 50.000 9.64 6.42 41.09 6.01
613 621 1.319172 CGTGTATATGAGCTCGCGTC 58.681 55.000 9.64 0.00 0.00 5.19
614 622 1.069838 CGTGTATATGAGCTCGCGTCT 60.070 52.381 9.64 4.43 0.00 4.18
615 623 2.311462 GTGTATATGAGCTCGCGTCTG 58.689 52.381 9.64 0.00 0.00 3.51
616 624 1.947456 TGTATATGAGCTCGCGTCTGT 59.053 47.619 9.64 0.00 0.00 3.41
617 625 3.059120 GTGTATATGAGCTCGCGTCTGTA 60.059 47.826 9.64 1.23 0.00 2.74
618 626 2.690173 ATATGAGCTCGCGTCTGTAC 57.310 50.000 9.64 0.00 0.00 2.90
619 627 1.664873 TATGAGCTCGCGTCTGTACT 58.335 50.000 9.64 0.00 0.00 2.73
620 628 0.099613 ATGAGCTCGCGTCTGTACTG 59.900 55.000 9.64 0.00 0.00 2.74
621 629 1.235281 TGAGCTCGCGTCTGTACTGT 61.235 55.000 9.64 0.00 0.00 3.55
622 630 0.794981 GAGCTCGCGTCTGTACTGTG 60.795 60.000 5.77 0.00 0.00 3.66
623 631 1.081376 GCTCGCGTCTGTACTGTGT 60.081 57.895 5.77 0.00 0.00 3.72
624 632 1.337817 GCTCGCGTCTGTACTGTGTG 61.338 60.000 5.77 0.00 0.00 3.82
625 633 0.237498 CTCGCGTCTGTACTGTGTGA 59.763 55.000 5.77 3.09 0.00 3.58
626 634 0.664224 TCGCGTCTGTACTGTGTGAA 59.336 50.000 5.77 0.00 0.00 3.18
627 635 1.065851 TCGCGTCTGTACTGTGTGAAA 59.934 47.619 5.77 0.00 0.00 2.69
628 636 1.855978 CGCGTCTGTACTGTGTGAAAA 59.144 47.619 0.00 0.00 0.00 2.29
629 637 2.097396 CGCGTCTGTACTGTGTGAAAAG 60.097 50.000 0.00 0.00 0.00 2.27
630 638 3.120792 GCGTCTGTACTGTGTGAAAAGA 58.879 45.455 0.00 0.00 0.00 2.52
631 639 3.554324 GCGTCTGTACTGTGTGAAAAGAA 59.446 43.478 0.00 0.00 0.00 2.52
632 640 4.033587 GCGTCTGTACTGTGTGAAAAGAAA 59.966 41.667 0.00 0.00 0.00 2.52
633 641 5.446741 GCGTCTGTACTGTGTGAAAAGAAAA 60.447 40.000 0.00 0.00 0.00 2.29
634 642 6.539324 CGTCTGTACTGTGTGAAAAGAAAAA 58.461 36.000 0.00 0.00 0.00 1.94
635 643 6.682863 CGTCTGTACTGTGTGAAAAGAAAAAG 59.317 38.462 0.00 0.00 0.00 2.27
636 644 7.527457 GTCTGTACTGTGTGAAAAGAAAAAGT 58.473 34.615 0.00 0.00 0.00 2.66
639 647 9.490663 CTGTACTGTGTGAAAAGAAAAAGTAAG 57.509 33.333 0.00 0.00 0.00 2.34
668 677 3.242870 GCCTAATCTGAAACCTGCGAATG 60.243 47.826 0.00 0.00 0.00 2.67
727 736 7.500141 TGTTAATTAGGTCGGGGAGTAATTAC 58.500 38.462 7.57 7.57 30.63 1.89
826 835 1.263356 CCTCCTACCAACCTGACGAA 58.737 55.000 0.00 0.00 0.00 3.85
933 943 2.757917 ACTCTCTCCAGCCGAGCC 60.758 66.667 0.00 0.00 38.62 4.70
934 944 2.757508 CTCTCTCCAGCCGAGCCA 60.758 66.667 0.00 0.00 38.62 4.75
935 945 2.283894 TCTCTCCAGCCGAGCCAA 60.284 61.111 0.00 0.00 38.62 4.52
936 946 2.186384 CTCTCCAGCCGAGCCAAG 59.814 66.667 0.00 0.00 38.62 3.61
937 947 4.087892 TCTCCAGCCGAGCCAAGC 62.088 66.667 0.00 0.00 38.62 4.01
938 948 4.093291 CTCCAGCCGAGCCAAGCT 62.093 66.667 0.00 0.00 43.88 3.74
939 949 2.683572 TCCAGCCGAGCCAAGCTA 60.684 61.111 0.00 0.00 39.88 3.32
967 977 2.508436 GAGCCCAAGGAGCTAGCC 59.492 66.667 12.13 2.59 41.75 3.93
1717 1737 1.211969 CAAGATGCTGGTGCTGTGC 59.788 57.895 0.00 0.00 40.48 4.57
1718 1738 1.074423 AAGATGCTGGTGCTGTGCT 59.926 52.632 0.00 0.00 40.48 4.40
1720 1740 2.745100 ATGCTGGTGCTGTGCTCG 60.745 61.111 0.00 0.00 40.48 5.03
1887 1914 5.244178 ACGGGGAATATCTTAGCTTCTACAG 59.756 44.000 0.00 0.00 0.00 2.74
1936 1963 0.661020 CGTTTGTCTTTTCGGCCACT 59.339 50.000 2.24 0.00 0.00 4.00
1939 1966 2.341846 TTGTCTTTTCGGCCACTTCT 57.658 45.000 2.24 0.00 0.00 2.85
1940 1967 3.478857 TTGTCTTTTCGGCCACTTCTA 57.521 42.857 2.24 0.00 0.00 2.10
1970 1997 6.877611 TTTCACTGTGTCCTTTATCTTTCC 57.122 37.500 7.79 0.00 0.00 3.13
2063 2252 3.068560 GCCGTGACCATTACTTTGTACA 58.931 45.455 0.00 0.00 0.00 2.90
2091 2287 4.621068 AATGTGAATACAATGCTGTCGG 57.379 40.909 0.00 0.00 40.84 4.79
2140 2337 0.108709 ATCGCCATTTGCAATTGCGT 60.109 45.000 26.34 11.09 45.06 5.24
2141 2338 0.319383 TCGCCATTTGCAATTGCGTT 60.319 45.000 26.34 9.63 45.06 4.84
2142 2339 0.179245 CGCCATTTGCAATTGCGTTG 60.179 50.000 24.58 19.70 45.83 4.10
2496 2714 0.469494 TGTCACTCACACACATGGCT 59.531 50.000 0.00 0.00 0.00 4.75
2506 2724 0.397941 ACACATGGCTGCTGTACTGT 59.602 50.000 0.00 0.00 0.00 3.55
2510 2728 2.274437 CATGGCTGCTGTACTGTACTG 58.726 52.381 17.98 17.68 0.00 2.74
2512 2730 2.521126 TGGCTGCTGTACTGTACTGTA 58.479 47.619 21.03 17.20 0.00 2.74
2514 2732 2.492484 GGCTGCTGTACTGTACTGTACT 59.508 50.000 30.96 5.78 42.22 2.73
2517 2735 4.558898 GCTGCTGTACTGTACTGTACTGTT 60.559 45.833 31.45 15.98 42.22 3.16
2519 2737 4.235360 GCTGTACTGTACTGTACTGTTGG 58.765 47.826 31.45 19.89 42.22 3.77
2520 2738 4.022589 GCTGTACTGTACTGTACTGTTGGA 60.023 45.833 31.45 18.04 42.22 3.53
2521 2739 5.336531 GCTGTACTGTACTGTACTGTTGGAT 60.337 44.000 31.45 11.33 42.22 3.41
2522 2740 6.020971 TGTACTGTACTGTACTGTTGGATG 57.979 41.667 30.96 8.62 42.22 3.51
2523 2741 4.537135 ACTGTACTGTACTGTTGGATGG 57.463 45.455 20.48 0.01 37.54 3.51
2524 2742 4.157246 ACTGTACTGTACTGTTGGATGGA 58.843 43.478 20.48 0.00 37.54 3.41
2525 2743 4.777896 ACTGTACTGTACTGTTGGATGGAT 59.222 41.667 20.48 0.30 37.54 3.41
2576 2794 1.353103 CCATCACGCGCCAATCTTC 59.647 57.895 5.73 0.00 0.00 2.87
2583 2802 0.873743 CGCGCCAATCTTCTCCTCTC 60.874 60.000 0.00 0.00 0.00 3.20
2596 2815 1.332375 CTCCTCTCGTTCGAGATCACC 59.668 57.143 22.11 0.00 40.07 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.565670 GGGGGAAGGCCTTTAAAAGATGA 60.566 47.826 21.54 0.00 0.00 2.92
36 37 2.319025 TGGGGGAAGGCCTTTAAAAG 57.681 50.000 21.54 0.00 0.00 2.27
99 100 5.720041 AGTAGTTGCTCTGTAGGTAATCCAA 59.280 40.000 0.00 0.00 35.89 3.53
134 135 1.784358 ATGCATCAACCCATCCTTGG 58.216 50.000 0.00 0.00 43.23 3.61
213 214 8.531530 GCTGCGTATTTTTATCGATTTTCAAAT 58.468 29.630 1.71 6.18 0.00 2.32
222 226 5.120986 TGACTTTGCTGCGTATTTTTATCGA 59.879 36.000 0.00 0.00 0.00 3.59
224 228 6.291269 GCATGACTTTGCTGCGTATTTTTATC 60.291 38.462 0.00 0.00 39.57 1.75
238 242 1.615392 AGGGAAACTGCATGACTTTGC 59.385 47.619 0.00 0.00 43.07 3.68
241 245 4.985538 TCTTAAGGGAAACTGCATGACTT 58.014 39.130 1.85 0.00 0.00 3.01
246 250 7.544804 AGATTTTTCTTAAGGGAAACTGCAT 57.455 32.000 1.85 0.00 35.31 3.96
252 256 9.475620 GGAGGATTAGATTTTTCTTAAGGGAAA 57.524 33.333 1.85 4.81 33.98 3.13
328 336 6.315393 TCGATGCCTTACTTTTCTTATCCAAC 59.685 38.462 0.00 0.00 0.00 3.77
331 339 6.238402 GGTTCGATGCCTTACTTTTCTTATCC 60.238 42.308 0.00 0.00 0.00 2.59
334 342 5.553123 TGGTTCGATGCCTTACTTTTCTTA 58.447 37.500 7.85 0.00 0.00 2.10
340 348 2.039879 AGGTTGGTTCGATGCCTTACTT 59.960 45.455 7.85 1.40 0.00 2.24
341 349 1.628846 AGGTTGGTTCGATGCCTTACT 59.371 47.619 7.85 1.51 0.00 2.24
342 350 1.737793 CAGGTTGGTTCGATGCCTTAC 59.262 52.381 7.85 6.14 0.00 2.34
343 351 1.349688 ACAGGTTGGTTCGATGCCTTA 59.650 47.619 7.85 0.00 0.00 2.69
344 352 0.110486 ACAGGTTGGTTCGATGCCTT 59.890 50.000 7.85 0.00 0.00 4.35
345 353 0.606401 CACAGGTTGGTTCGATGCCT 60.606 55.000 7.85 0.00 0.00 4.75
346 354 1.586154 CCACAGGTTGGTTCGATGCC 61.586 60.000 0.00 0.00 41.10 4.40
347 355 1.875963 CCACAGGTTGGTTCGATGC 59.124 57.895 0.00 0.00 41.10 3.91
358 366 3.424703 CTCAAATCATCCAACCACAGGT 58.575 45.455 0.00 0.00 37.65 4.00
359 367 2.756760 CCTCAAATCATCCAACCACAGG 59.243 50.000 0.00 0.00 0.00 4.00
360 368 2.756760 CCCTCAAATCATCCAACCACAG 59.243 50.000 0.00 0.00 0.00 3.66
361 369 2.378208 TCCCTCAAATCATCCAACCACA 59.622 45.455 0.00 0.00 0.00 4.17
362 370 3.019564 CTCCCTCAAATCATCCAACCAC 58.980 50.000 0.00 0.00 0.00 4.16
363 371 2.649312 ACTCCCTCAAATCATCCAACCA 59.351 45.455 0.00 0.00 0.00 3.67
364 372 3.019564 CACTCCCTCAAATCATCCAACC 58.980 50.000 0.00 0.00 0.00 3.77
365 373 3.441572 CACACTCCCTCAAATCATCCAAC 59.558 47.826 0.00 0.00 0.00 3.77
366 374 3.330405 TCACACTCCCTCAAATCATCCAA 59.670 43.478 0.00 0.00 0.00 3.53
367 375 2.912295 TCACACTCCCTCAAATCATCCA 59.088 45.455 0.00 0.00 0.00 3.41
368 376 3.634397 TCACACTCCCTCAAATCATCC 57.366 47.619 0.00 0.00 0.00 3.51
369 377 5.936956 GGATATCACACTCCCTCAAATCATC 59.063 44.000 4.83 0.00 0.00 2.92
370 378 5.222007 GGGATATCACACTCCCTCAAATCAT 60.222 44.000 4.83 0.00 46.55 2.45
371 379 4.103153 GGGATATCACACTCCCTCAAATCA 59.897 45.833 4.83 0.00 46.55 2.57
372 380 4.646572 GGGATATCACACTCCCTCAAATC 58.353 47.826 4.83 0.00 46.55 2.17
373 381 4.713792 GGGATATCACACTCCCTCAAAT 57.286 45.455 4.83 0.00 46.55 2.32
380 388 1.903183 GGGCTAGGGATATCACACTCC 59.097 57.143 7.92 4.41 0.00 3.85
381 389 2.300437 GTGGGCTAGGGATATCACACTC 59.700 54.545 7.92 0.00 0.00 3.51
382 390 2.330216 GTGGGCTAGGGATATCACACT 58.670 52.381 7.92 3.55 0.00 3.55
383 391 1.348036 GGTGGGCTAGGGATATCACAC 59.652 57.143 7.92 0.00 0.00 3.82
384 392 1.061735 TGGTGGGCTAGGGATATCACA 60.062 52.381 7.92 0.00 0.00 3.58
385 393 1.625818 CTGGTGGGCTAGGGATATCAC 59.374 57.143 4.83 0.00 0.00 3.06
386 394 1.485019 CCTGGTGGGCTAGGGATATCA 60.485 57.143 4.83 0.00 39.43 2.15
387 395 1.280457 CCTGGTGGGCTAGGGATATC 58.720 60.000 0.00 0.00 39.43 1.63
388 396 3.502086 CCTGGTGGGCTAGGGATAT 57.498 57.895 0.00 0.00 39.43 1.63
399 407 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
404 412 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
405 413 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
406 414 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
407 415 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
408 416 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
409 417 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
410 418 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
411 419 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
412 420 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
413 421 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
414 422 2.288666 GAATAAATGCGAGCACCAGGA 58.711 47.619 0.00 0.00 0.00 3.86
415 423 1.334869 GGAATAAATGCGAGCACCAGG 59.665 52.381 0.00 0.00 0.00 4.45
416 424 2.032550 CAGGAATAAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
417 425 2.016318 CAGGAATAAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
418 426 1.334869 CCAGGAATAAATGCGAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
419 427 2.288666 TCCAGGAATAAATGCGAGCAC 58.711 47.619 0.00 0.00 0.00 4.40
420 428 2.708216 TCCAGGAATAAATGCGAGCA 57.292 45.000 0.00 0.00 0.00 4.26
421 429 4.574599 AAATCCAGGAATAAATGCGAGC 57.425 40.909 0.00 0.00 0.00 5.03
424 432 9.410556 CCTAAAATAAATCCAGGAATAAATGCG 57.589 33.333 0.00 0.00 0.00 4.73
431 439 8.860088 CGGAAATCCTAAAATAAATCCAGGAAT 58.140 33.333 0.00 0.00 38.82 3.01
432 440 7.286775 CCGGAAATCCTAAAATAAATCCAGGAA 59.713 37.037 0.00 0.00 38.82 3.36
433 441 6.775629 CCGGAAATCCTAAAATAAATCCAGGA 59.224 38.462 0.00 0.00 39.63 3.86
434 442 6.516693 GCCGGAAATCCTAAAATAAATCCAGG 60.517 42.308 5.05 0.00 0.00 4.45
435 443 6.265422 AGCCGGAAATCCTAAAATAAATCCAG 59.735 38.462 5.05 0.00 0.00 3.86
436 444 6.133356 AGCCGGAAATCCTAAAATAAATCCA 58.867 36.000 5.05 0.00 0.00 3.41
437 445 6.650427 AGCCGGAAATCCTAAAATAAATCC 57.350 37.500 5.05 0.00 0.00 3.01
440 448 8.736244 GCATATAGCCGGAAATCCTAAAATAAA 58.264 33.333 5.05 0.00 37.23 1.40
441 449 7.885922 TGCATATAGCCGGAAATCCTAAAATAA 59.114 33.333 5.05 0.00 44.83 1.40
442 450 7.398829 TGCATATAGCCGGAAATCCTAAAATA 58.601 34.615 5.05 0.00 44.83 1.40
443 451 6.245408 TGCATATAGCCGGAAATCCTAAAAT 58.755 36.000 5.05 0.00 44.83 1.82
444 452 5.626142 TGCATATAGCCGGAAATCCTAAAA 58.374 37.500 5.05 0.00 44.83 1.52
445 453 5.235850 TGCATATAGCCGGAAATCCTAAA 57.764 39.130 5.05 0.00 44.83 1.85
446 454 4.901197 TGCATATAGCCGGAAATCCTAA 57.099 40.909 5.05 0.00 44.83 2.69
447 455 5.045942 TGAATGCATATAGCCGGAAATCCTA 60.046 40.000 5.05 0.00 44.83 2.94
448 456 4.263462 TGAATGCATATAGCCGGAAATCCT 60.263 41.667 5.05 0.00 44.83 3.24
449 457 4.009675 TGAATGCATATAGCCGGAAATCC 58.990 43.478 5.05 0.00 44.83 3.01
450 458 4.697352 ACTGAATGCATATAGCCGGAAATC 59.303 41.667 5.05 0.00 44.83 2.17
451 459 4.456911 CACTGAATGCATATAGCCGGAAAT 59.543 41.667 5.05 0.00 44.83 2.17
452 460 3.814842 CACTGAATGCATATAGCCGGAAA 59.185 43.478 5.05 0.00 44.83 3.13
453 461 3.402110 CACTGAATGCATATAGCCGGAA 58.598 45.455 5.05 0.00 44.83 4.30
454 462 2.289631 CCACTGAATGCATATAGCCGGA 60.290 50.000 5.05 0.00 44.83 5.14
455 463 2.079158 CCACTGAATGCATATAGCCGG 58.921 52.381 0.00 0.00 44.83 6.13
456 464 2.079158 CCCACTGAATGCATATAGCCG 58.921 52.381 0.00 0.00 44.83 5.52
457 465 3.341823 CTCCCACTGAATGCATATAGCC 58.658 50.000 0.00 0.00 44.83 3.93
458 466 3.008375 TCCTCCCACTGAATGCATATAGC 59.992 47.826 0.00 0.00 45.96 2.97
459 467 4.529769 TCTCCTCCCACTGAATGCATATAG 59.470 45.833 0.00 3.95 0.00 1.31
460 468 4.284490 GTCTCCTCCCACTGAATGCATATA 59.716 45.833 0.00 0.00 0.00 0.86
461 469 3.072184 GTCTCCTCCCACTGAATGCATAT 59.928 47.826 0.00 0.00 0.00 1.78
462 470 2.435805 GTCTCCTCCCACTGAATGCATA 59.564 50.000 0.00 0.00 0.00 3.14
463 471 1.211457 GTCTCCTCCCACTGAATGCAT 59.789 52.381 0.00 0.00 0.00 3.96
464 472 0.615331 GTCTCCTCCCACTGAATGCA 59.385 55.000 0.00 0.00 0.00 3.96
465 473 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
466 474 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
467 475 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
468 476 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
469 477 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
470 478 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
471 479 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
490 498 3.482722 TGAAATCACCTCGTAGTCGAC 57.517 47.619 7.70 7.70 41.35 4.20
491 499 3.754850 TCTTGAAATCACCTCGTAGTCGA 59.245 43.478 0.00 0.00 44.12 4.20
492 500 4.092771 TCTTGAAATCACCTCGTAGTCG 57.907 45.455 0.00 0.00 38.55 4.18
493 501 5.651530 TCATCTTGAAATCACCTCGTAGTC 58.348 41.667 0.00 0.00 0.00 2.59
494 502 5.661056 TCATCTTGAAATCACCTCGTAGT 57.339 39.130 0.00 0.00 0.00 2.73
495 503 7.148672 GCATATCATCTTGAAATCACCTCGTAG 60.149 40.741 0.00 0.00 0.00 3.51
496 504 6.646653 GCATATCATCTTGAAATCACCTCGTA 59.353 38.462 0.00 0.00 0.00 3.43
497 505 5.468072 GCATATCATCTTGAAATCACCTCGT 59.532 40.000 0.00 0.00 0.00 4.18
498 506 5.106791 GGCATATCATCTTGAAATCACCTCG 60.107 44.000 0.00 0.00 0.00 4.63
499 507 5.766670 TGGCATATCATCTTGAAATCACCTC 59.233 40.000 0.00 0.00 0.00 3.85
500 508 5.698104 TGGCATATCATCTTGAAATCACCT 58.302 37.500 0.00 0.00 0.00 4.00
501 509 5.564259 GCTGGCATATCATCTTGAAATCACC 60.564 44.000 0.00 0.00 0.00 4.02
502 510 5.241064 AGCTGGCATATCATCTTGAAATCAC 59.759 40.000 0.00 0.00 0.00 3.06
503 511 5.382616 AGCTGGCATATCATCTTGAAATCA 58.617 37.500 0.00 0.00 0.00 2.57
504 512 5.472478 TGAGCTGGCATATCATCTTGAAATC 59.528 40.000 0.00 0.00 0.00 2.17
505 513 5.382616 TGAGCTGGCATATCATCTTGAAAT 58.617 37.500 0.00 0.00 0.00 2.17
506 514 4.784177 TGAGCTGGCATATCATCTTGAAA 58.216 39.130 0.00 0.00 0.00 2.69
507 515 4.141551 ACTGAGCTGGCATATCATCTTGAA 60.142 41.667 0.00 0.00 0.00 2.69
508 516 3.390311 ACTGAGCTGGCATATCATCTTGA 59.610 43.478 0.00 0.00 0.00 3.02
509 517 3.741249 ACTGAGCTGGCATATCATCTTG 58.259 45.455 0.00 0.00 0.00 3.02
510 518 3.647113 AGACTGAGCTGGCATATCATCTT 59.353 43.478 0.00 0.00 0.00 2.40
511 519 3.241156 AGACTGAGCTGGCATATCATCT 58.759 45.455 0.00 5.63 0.00 2.90
512 520 3.681593 AGACTGAGCTGGCATATCATC 57.318 47.619 0.00 3.89 0.00 2.92
513 521 4.387598 GAAAGACTGAGCTGGCATATCAT 58.612 43.478 0.00 0.00 0.00 2.45
514 522 3.739209 CGAAAGACTGAGCTGGCATATCA 60.739 47.826 0.00 0.00 0.00 2.15
515 523 2.799412 CGAAAGACTGAGCTGGCATATC 59.201 50.000 0.00 0.00 0.00 1.63
516 524 2.432146 TCGAAAGACTGAGCTGGCATAT 59.568 45.455 0.00 0.00 33.31 1.78
517 525 1.824852 TCGAAAGACTGAGCTGGCATA 59.175 47.619 0.00 0.00 33.31 3.14
518 526 0.610174 TCGAAAGACTGAGCTGGCAT 59.390 50.000 0.00 0.00 33.31 4.40
519 527 0.392706 TTCGAAAGACTGAGCTGGCA 59.607 50.000 0.00 0.00 41.84 4.92
520 528 1.462670 CTTTCGAAAGACTGAGCTGGC 59.537 52.381 29.89 0.00 41.84 4.85
521 529 2.478134 CACTTTCGAAAGACTGAGCTGG 59.522 50.000 37.54 13.75 41.84 4.85
522 530 2.096516 GCACTTTCGAAAGACTGAGCTG 60.097 50.000 37.54 25.29 41.84 4.24
523 531 2.139118 GCACTTTCGAAAGACTGAGCT 58.861 47.619 37.54 15.70 41.84 4.09
524 532 2.139118 AGCACTTTCGAAAGACTGAGC 58.861 47.619 37.54 28.89 41.84 4.26
525 533 3.384668 TGAGCACTTTCGAAAGACTGAG 58.615 45.455 37.54 22.85 41.84 3.35
526 534 3.068165 TCTGAGCACTTTCGAAAGACTGA 59.932 43.478 37.54 26.53 41.84 3.41
527 535 3.384668 TCTGAGCACTTTCGAAAGACTG 58.615 45.455 37.54 27.75 41.84 3.51
528 536 3.553922 CCTCTGAGCACTTTCGAAAGACT 60.554 47.826 37.54 31.56 41.84 3.24
529 537 2.734079 CCTCTGAGCACTTTCGAAAGAC 59.266 50.000 37.54 28.28 41.84 3.01
530 538 2.289072 CCCTCTGAGCACTTTCGAAAGA 60.289 50.000 37.54 18.23 39.31 2.52
531 539 2.072298 CCCTCTGAGCACTTTCGAAAG 58.928 52.381 31.29 31.29 41.73 2.62
532 540 1.270839 CCCCTCTGAGCACTTTCGAAA 60.271 52.381 10.71 10.71 0.00 3.46
533 541 0.321671 CCCCTCTGAGCACTTTCGAA 59.678 55.000 0.00 0.00 0.00 3.71
534 542 0.832135 ACCCCTCTGAGCACTTTCGA 60.832 55.000 0.00 0.00 0.00 3.71
535 543 0.895530 TACCCCTCTGAGCACTTTCG 59.104 55.000 0.00 0.00 0.00 3.46
536 544 1.208293 CCTACCCCTCTGAGCACTTTC 59.792 57.143 0.00 0.00 0.00 2.62
537 545 1.203313 TCCTACCCCTCTGAGCACTTT 60.203 52.381 0.00 0.00 0.00 2.66
538 546 0.413832 TCCTACCCCTCTGAGCACTT 59.586 55.000 0.00 0.00 0.00 3.16
539 547 0.639392 ATCCTACCCCTCTGAGCACT 59.361 55.000 0.00 0.00 0.00 4.40
540 548 0.755686 CATCCTACCCCTCTGAGCAC 59.244 60.000 0.00 0.00 0.00 4.40
541 549 0.339859 ACATCCTACCCCTCTGAGCA 59.660 55.000 0.00 0.00 0.00 4.26
542 550 0.755686 CACATCCTACCCCTCTGAGC 59.244 60.000 0.00 0.00 0.00 4.26
543 551 0.755686 GCACATCCTACCCCTCTGAG 59.244 60.000 0.00 0.00 0.00 3.35
544 552 1.043116 CGCACATCCTACCCCTCTGA 61.043 60.000 0.00 0.00 0.00 3.27
545 553 1.330655 ACGCACATCCTACCCCTCTG 61.331 60.000 0.00 0.00 0.00 3.35
546 554 1.001760 ACGCACATCCTACCCCTCT 59.998 57.895 0.00 0.00 0.00 3.69
547 555 1.144057 CACGCACATCCTACCCCTC 59.856 63.158 0.00 0.00 0.00 4.30
548 556 1.612442 ACACGCACATCCTACCCCT 60.612 57.895 0.00 0.00 0.00 4.79
549 557 1.449601 CACACGCACATCCTACCCC 60.450 63.158 0.00 0.00 0.00 4.95
550 558 1.019278 CACACACGCACATCCTACCC 61.019 60.000 0.00 0.00 0.00 3.69
551 559 1.635663 GCACACACGCACATCCTACC 61.636 60.000 0.00 0.00 0.00 3.18
552 560 0.948623 TGCACACACGCACATCCTAC 60.949 55.000 0.00 0.00 36.86 3.18
553 561 0.036483 ATGCACACACGCACATCCTA 60.036 50.000 0.00 0.00 46.56 2.94
554 562 0.890542 AATGCACACACGCACATCCT 60.891 50.000 0.00 0.00 46.56 3.24
555 563 0.454957 GAATGCACACACGCACATCC 60.455 55.000 0.00 0.00 46.56 3.51
556 564 0.790495 CGAATGCACACACGCACATC 60.790 55.000 0.00 0.00 46.56 3.06
557 565 1.207339 CGAATGCACACACGCACAT 59.793 52.632 0.00 0.00 46.56 3.21
558 566 0.876342 TACGAATGCACACACGCACA 60.876 50.000 0.00 0.00 46.56 4.57
559 567 0.179250 CTACGAATGCACACACGCAC 60.179 55.000 0.00 0.00 46.56 5.34
561 569 1.419922 CCTACGAATGCACACACGC 59.580 57.895 0.00 0.00 0.00 5.34
562 570 1.358725 CCCCTACGAATGCACACACG 61.359 60.000 0.00 0.00 0.00 4.49
563 571 0.321298 ACCCCTACGAATGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
564 572 0.321210 CACCCCTACGAATGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
565 573 0.036765 TCACCCCTACGAATGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
566 574 0.687920 TTCACCCCTACGAATGCACA 59.312 50.000 0.00 0.00 0.00 4.57
567 575 1.670811 CATTCACCCCTACGAATGCAC 59.329 52.381 0.00 0.00 41.33 4.57
568 576 2.036958 CATTCACCCCTACGAATGCA 57.963 50.000 0.00 0.00 41.33 3.96
571 579 3.135712 TGCATACATTCACCCCTACGAAT 59.864 43.478 0.00 0.00 32.04 3.34
572 580 2.502130 TGCATACATTCACCCCTACGAA 59.498 45.455 0.00 0.00 0.00 3.85
573 581 2.112190 TGCATACATTCACCCCTACGA 58.888 47.619 0.00 0.00 0.00 3.43
574 582 2.210116 GTGCATACATTCACCCCTACG 58.790 52.381 0.00 0.00 0.00 3.51
575 583 2.210116 CGTGCATACATTCACCCCTAC 58.790 52.381 0.00 0.00 0.00 3.18
576 584 1.834896 ACGTGCATACATTCACCCCTA 59.165 47.619 0.00 0.00 0.00 3.53
577 585 0.618458 ACGTGCATACATTCACCCCT 59.382 50.000 0.00 0.00 0.00 4.79
578 586 0.732571 CACGTGCATACATTCACCCC 59.267 55.000 0.82 0.00 0.00 4.95
579 587 1.448985 ACACGTGCATACATTCACCC 58.551 50.000 17.22 0.00 0.00 4.61
580 588 5.694458 TCATATACACGTGCATACATTCACC 59.306 40.000 17.22 0.00 0.00 4.02
581 589 6.616471 GCTCATATACACGTGCATACATTCAC 60.616 42.308 17.22 0.00 0.00 3.18
582 590 5.405269 GCTCATATACACGTGCATACATTCA 59.595 40.000 17.22 0.00 0.00 2.57
583 591 5.635280 AGCTCATATACACGTGCATACATTC 59.365 40.000 17.22 3.95 0.00 2.67
584 592 5.541845 AGCTCATATACACGTGCATACATT 58.458 37.500 17.22 0.00 0.00 2.71
585 593 5.139435 AGCTCATATACACGTGCATACAT 57.861 39.130 17.22 4.05 0.00 2.29
586 594 4.546570 GAGCTCATATACACGTGCATACA 58.453 43.478 17.22 2.39 0.00 2.29
587 595 3.604198 CGAGCTCATATACACGTGCATAC 59.396 47.826 17.22 0.67 0.00 2.39
588 596 3.821841 CGAGCTCATATACACGTGCATA 58.178 45.455 17.22 13.68 0.00 3.14
589 597 2.666026 CGAGCTCATATACACGTGCAT 58.334 47.619 17.22 11.52 0.00 3.96
590 598 1.864029 GCGAGCTCATATACACGTGCA 60.864 52.381 17.22 2.06 0.00 4.57
591 599 0.778815 GCGAGCTCATATACACGTGC 59.221 55.000 17.22 0.00 0.00 5.34
592 600 1.045477 CGCGAGCTCATATACACGTG 58.955 55.000 15.48 15.48 0.00 4.49
593 601 0.661552 ACGCGAGCTCATATACACGT 59.338 50.000 15.93 8.21 0.00 4.49
594 602 1.069838 AGACGCGAGCTCATATACACG 60.070 52.381 15.93 7.60 0.00 4.49
595 603 2.287069 ACAGACGCGAGCTCATATACAC 60.287 50.000 15.93 0.00 0.00 2.90
596 604 1.947456 ACAGACGCGAGCTCATATACA 59.053 47.619 15.93 0.00 0.00 2.29
597 605 2.690173 ACAGACGCGAGCTCATATAC 57.310 50.000 15.93 0.77 0.00 1.47
598 606 3.186613 CAGTACAGACGCGAGCTCATATA 59.813 47.826 15.93 0.00 0.00 0.86
599 607 2.031595 CAGTACAGACGCGAGCTCATAT 60.032 50.000 15.93 0.00 0.00 1.78
600 608 1.330829 CAGTACAGACGCGAGCTCATA 59.669 52.381 15.93 1.77 0.00 2.15
601 609 0.099613 CAGTACAGACGCGAGCTCAT 59.900 55.000 15.93 0.00 0.00 2.90
602 610 1.235281 ACAGTACAGACGCGAGCTCA 61.235 55.000 15.93 0.00 0.00 4.26
603 611 0.794981 CACAGTACAGACGCGAGCTC 60.795 60.000 15.93 2.73 0.00 4.09
604 612 1.210413 CACAGTACAGACGCGAGCT 59.790 57.895 15.93 6.80 0.00 4.09
605 613 1.081376 ACACAGTACAGACGCGAGC 60.081 57.895 15.93 3.96 0.00 5.03
606 614 0.237498 TCACACAGTACAGACGCGAG 59.763 55.000 15.93 4.52 0.00 5.03
607 615 0.664224 TTCACACAGTACAGACGCGA 59.336 50.000 15.93 0.00 0.00 5.87
608 616 1.483316 TTTCACACAGTACAGACGCG 58.517 50.000 3.53 3.53 0.00 6.01
609 617 3.120792 TCTTTTCACACAGTACAGACGC 58.879 45.455 0.00 0.00 0.00 5.19
610 618 5.712217 TTTCTTTTCACACAGTACAGACG 57.288 39.130 0.00 0.00 0.00 4.18
611 619 7.527457 ACTTTTTCTTTTCACACAGTACAGAC 58.473 34.615 0.00 0.00 0.00 3.51
612 620 7.681939 ACTTTTTCTTTTCACACAGTACAGA 57.318 32.000 0.00 0.00 0.00 3.41
613 621 9.490663 CTTACTTTTTCTTTTCACACAGTACAG 57.509 33.333 0.00 0.00 0.00 2.74
614 622 8.455682 CCTTACTTTTTCTTTTCACACAGTACA 58.544 33.333 0.00 0.00 0.00 2.90
615 623 7.913821 CCCTTACTTTTTCTTTTCACACAGTAC 59.086 37.037 0.00 0.00 0.00 2.73
616 624 7.415877 GCCCTTACTTTTTCTTTTCACACAGTA 60.416 37.037 0.00 0.00 0.00 2.74
617 625 6.627287 GCCCTTACTTTTTCTTTTCACACAGT 60.627 38.462 0.00 0.00 0.00 3.55
618 626 5.748630 GCCCTTACTTTTTCTTTTCACACAG 59.251 40.000 0.00 0.00 0.00 3.66
619 627 5.186021 TGCCCTTACTTTTTCTTTTCACACA 59.814 36.000 0.00 0.00 0.00 3.72
620 628 5.656480 TGCCCTTACTTTTTCTTTTCACAC 58.344 37.500 0.00 0.00 0.00 3.82
621 629 5.923733 TGCCCTTACTTTTTCTTTTCACA 57.076 34.783 0.00 0.00 0.00 3.58
622 630 6.238103 GCTTTGCCCTTACTTTTTCTTTTCAC 60.238 38.462 0.00 0.00 0.00 3.18
623 631 5.815222 GCTTTGCCCTTACTTTTTCTTTTCA 59.185 36.000 0.00 0.00 0.00 2.69
624 632 5.236478 GGCTTTGCCCTTACTTTTTCTTTTC 59.764 40.000 0.00 0.00 44.06 2.29
625 633 5.123227 GGCTTTGCCCTTACTTTTTCTTTT 58.877 37.500 0.00 0.00 44.06 2.27
626 634 4.703897 GGCTTTGCCCTTACTTTTTCTTT 58.296 39.130 0.00 0.00 44.06 2.52
627 635 4.336889 GGCTTTGCCCTTACTTTTTCTT 57.663 40.909 0.00 0.00 44.06 2.52
668 677 0.536915 GGCTTCCTCATGCAGGGATC 60.537 60.000 0.00 0.00 43.67 3.36
727 736 0.533032 GTCCGAGAAGAGAAGGGGTG 59.467 60.000 0.00 0.00 0.00 4.61
826 835 0.601311 GAAGTGAAGTGAGTGGCGCT 60.601 55.000 7.64 0.00 39.53 5.92
1140 1150 1.964373 GTTCTTGAAGCGGGCGGAA 60.964 57.895 0.00 0.00 0.00 4.30
1650 1668 0.250640 AAGTGTTGAGCTCTGCAGGG 60.251 55.000 15.13 12.70 0.00 4.45
1717 1737 0.389166 GTCTGCTGGGAACTGACGAG 60.389 60.000 0.00 0.00 0.00 4.18
1718 1738 1.112916 TGTCTGCTGGGAACTGACGA 61.113 55.000 0.00 0.00 38.43 4.20
1720 1740 0.321122 CCTGTCTGCTGGGAACTGAC 60.321 60.000 0.00 0.00 36.75 3.51
1767 1787 3.230355 GCGAAATTGCACACGAACATAA 58.770 40.909 0.00 0.00 34.15 1.90
1768 1788 2.723314 CGCGAAATTGCACACGAACATA 60.723 45.455 0.00 0.00 34.15 2.29
1769 1789 1.685302 GCGAAATTGCACACGAACAT 58.315 45.000 0.00 0.00 34.15 2.71
1856 1883 0.680061 AGATATTCCCCGTCTTCGCC 59.320 55.000 0.00 0.00 35.54 5.54
1887 1914 1.921243 AAGAAACAAAGCGGTGCAAC 58.079 45.000 0.00 0.00 0.00 4.17
1936 1963 4.049186 GACACAGTGAAAAGAGCGTAGAA 58.951 43.478 7.81 0.00 0.00 2.10
1939 1966 2.364324 AGGACACAGTGAAAAGAGCGTA 59.636 45.455 7.81 0.00 0.00 4.42
1940 1967 1.139058 AGGACACAGTGAAAAGAGCGT 59.861 47.619 7.81 0.00 0.00 5.07
1970 1997 2.409870 GCCTTCAGATGCCCCAACG 61.410 63.158 0.00 0.00 0.00 4.10
2063 2252 8.792830 ACAGCATTGTATTCACATTTACTACT 57.207 30.769 0.00 0.00 35.25 2.57
2084 2280 1.264288 CCAAGAGTGAAAACCGACAGC 59.736 52.381 0.00 0.00 0.00 4.40
2091 2287 2.835027 ACTCGGTCCAAGAGTGAAAAC 58.165 47.619 0.00 0.00 46.12 2.43
2496 2714 4.261867 CCAACAGTACAGTACAGTACAGCA 60.262 45.833 25.01 0.00 45.25 4.41
2506 2724 4.358214 TCCATCCATCCAACAGTACAGTA 58.642 43.478 0.00 0.00 0.00 2.74
2510 2728 5.808366 TCTATCCATCCATCCAACAGTAC 57.192 43.478 0.00 0.00 0.00 2.73
2512 2730 4.020751 CGATCTATCCATCCATCCAACAGT 60.021 45.833 0.00 0.00 0.00 3.55
2514 2732 3.903714 ACGATCTATCCATCCATCCAACA 59.096 43.478 0.00 0.00 0.00 3.33
2517 2735 2.833943 CCACGATCTATCCATCCATCCA 59.166 50.000 0.00 0.00 0.00 3.41
2519 2737 3.428180 CGTCCACGATCTATCCATCCATC 60.428 52.174 0.00 0.00 43.02 3.51
2520 2738 2.493675 CGTCCACGATCTATCCATCCAT 59.506 50.000 0.00 0.00 43.02 3.41
2521 2739 1.886542 CGTCCACGATCTATCCATCCA 59.113 52.381 0.00 0.00 43.02 3.41
2522 2740 1.402984 GCGTCCACGATCTATCCATCC 60.403 57.143 2.58 0.00 43.02 3.51
2523 2741 1.729472 CGCGTCCACGATCTATCCATC 60.729 57.143 2.58 0.00 43.02 3.51
2524 2742 0.241213 CGCGTCCACGATCTATCCAT 59.759 55.000 2.58 0.00 43.02 3.41
2525 2743 1.099295 ACGCGTCCACGATCTATCCA 61.099 55.000 5.58 0.00 43.02 3.41
2583 2802 2.582498 GCCGGGTGATCTCGAACG 60.582 66.667 2.18 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.