>input_sequence_73846
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-------------------------------------------------ATGCTGGGCTGCTTCTCCCGGCTCCGGCGGC
CGGCCTCTGCCGCGGCGGGGGCGCCGGCCCCCGTGCAGCCGCCCGACGAGGCGTCCACGTCGGCCGCGTCGACCTCCACC
CCGGCGACCTCCCCGCGCTCGTCCTCCTCTTCCGCCCGCTTCAAGAACGCGTGCCTCCGGGACGGCGGCAGGGGCGGGGA
CGCCGA------CGTCGCGAAGGAGTGCCCGCCGCTGTCGCCCGCGCTCGCCGTGGACTCCGGGCTGTCGTCGGCCATCG
CGTCCCGGCGGTTCTTCCTCGCCTCCCCGGGCCGGTCCAACTCCATCGTGGACTCGTCGGCGGCGCACGCGGCCGCCGTG
CTGGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACCTACTCCCCGGACCCGCACGCCGACTTCCTGCGGTCCATGGAGGA
GATGTCGGCGGCGCTGCGGCTGGACGCGCGGCGGCGCGGCGACAGGGCGCGCCTCCACGAGCTGCTGCTCTGCTACCTGG
CGCTCAACGACAAGCGCGCGCACCGGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCCTCACCGCCACCGACGAC
CTCGACGCCGACGACGAGCAGCACGGCAGCATGTAG--------------------------------------------
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>chr4D_1_TraesCS4D01G273800
TTCTTGGGATATAAGGATCATCATGAATGACTTCATCTTTTAAAGGCCTTCCCCCAAACCTATATGTTTGCAGGAGGATA
TTTGAAAAAAGAGATGCACTTGGATTACCTACAGAGCAACTACTATGGAGGCTTCCAAGGATGGGTTGATGCATTCAAAT
AATTGACATGGCAGTTATCATAGTTTTGTTGTACAGAACATTTTGTACCTCTTA---TTTGAAAATCGATAAAAATACGC
AGCAAAGTCATGCAGTTTCCCTTAAGAAAAATCTAATCCTCCTCGAAAAAAAGA----CAATCTAATCTATGAACCTGGA
TAATCTTTTAGTTTTGTTGGATAAGAAAAGTAAGGCATCGAACCAACCTGTGGTTGGATGATTTGAGGGAGTGTGATATC
CCTAGCCCACCAGGGTTCAAATCCTGGTGCTCGCATTTATTCCTGGATTTATTTTAGGATTTCCGGCTATATGCATTCAG
TGGGAGGAGACGTTCCCGTCGACTACGAGGTGATTTCAAGATGATATGCCAGCTCAGTCTTTCGAAAGTGCTCAGAGGGG
TAGGATGTGCGTGTGTGCATTCGTAGGGGTGAATGTATGCACGTGTATATGAGCTCGCGTCTGTACTGTGTGAAAAGAAA
AAGTAAGGGCAAAGCCTAATCT-GAAACCTGCGAATGATCCCTGCATGAGGAAGCCGCATCTACTCCACCTGTTAATTAG
GTCGGGGAGTAATTACACCCCTTCTCTTCTCGGACAAACTAGTGTCCCCTTGTCAGCTCTGCACTGAACTCAATACGTCC
AATAATAGGTGAGCCCCTCCTACCAACCTGACGAAGCGCCACTCACTTCACTTCACTTCCCCTATAAACTCCCCGCAGCA
TCCACCACGCTCTCACTCCATTCACCGCGCACAACCACCTCCCC-ACTCTCTCCAGCCGAGCCAAGCTAGCTAGAGAGCG
AGCCCAAGGAGCTAGCCGAGCCCGCTTCGAGGCAAGAATTCAAAGCGCCATGCTGGGCTGCTTCTCCCGGCTCCGGCGGC
CGGCCTCTGCCGCGGCGGGGGCGCCGGCCCCCGTGCAGCCGCCCGACGAGGCGTCCACGTCGGCCGCGTCGACCTCCACC
CCGGCGACCTCCCCGCGCTCGTCCTCCTCTTCCGCCCGCTTCAAGAACGCGTGCCTCCGGGACGGCGGCAGGGGCGGGGA
CGCCGA------CGTCGCGAAGGAGTGCCCGCCGCTGTCGCCCGCGCTCGCCGTGGACTCCGGGCTGTCGTCGGCCATCG
CGTCCCGGCGGTTCTTCCTCGCCTCCCCGGGCCGGTCCAACTCCATCGTGGACTCGTCGGCGGCGCACGCGGCCGCCGTG
CTGGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACCTACTCCCCGGACCCGCACGCCGACTTCCTGCGGTCCATGGAGGA
GATGTCGGCGGCGCTGCGGCTGGACGCGCGGCGGCGCGGCGACAGGGCGCGCCTCCACGAGCTGCTGCTCTGCTACCTGG
CGCTCAACGACAAGCGCGCGCACCGGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCCTCACCGCCACCGACGAC
CTCGACGCCGACGACGAGCAGCACGGCAGCATGTAGCAGCTGCGTCGACGTGCCTGCCTG--TGCCTCCCTGCAGAGCTC
AACACTTTCGTCCATTTCTCATAT--TTTTTTGGGGTGCAAGATGCTGGTGCTGTGCTCGTCAGTTCCCAGCAGACAGGC
CATGCATCTGATCTGACTGTAAAAAATTATGTTCGTGTGCAATTTCGCGGC---AAAAGCCGCTTTGTACCTTTGTGTGG
GCGTTG----CTTTTGCTCTTTATGAAAGGCGTGAGCGTGCTGGCGAAGACGGGGAATATCTTAGCTTCTACAGTTGCAC
CGCTTTGTTTCTTTGTGTAATTGCGTTTGTCTTTTCGGCCACTTCTACGCTCTTTTCACTGTGTCCTTTATCTTTCCGTT
GGGGCATCTGAAGGCTAGTTTGGTACACTAAATAGAGTGTGCGCACAGGCCATGTCAGGCATGGTTATGCCGTGACCATT
ACTTTG--------------------------------------------------------------------------
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--------TACA-------GTAGTAAATGTGAATACAATGCTGTCGGTTTTC-ACTCTTGGACCGAGTAATTTTGGGATC
GCCATTTGCAATTGCGTTGCGCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGCAGGACGCAATAATAAACAGACGCCGTGCAAA
ACCAACCGCCGCCGTACGCGCATAGGCTCACTCTGTCACTCAC---------------------ACACATGGCTGCTGTA
CTGTACTGTACTGTTGGATGGATGGATAGATCGTGGACGCGTGGTAAACCAGTAACCATCACGCGCCAATCTTC-TCCTC
TCGTTCGAGATCACCCGGCCGTCCGAAATTAAGATGATT
>chr4B_1
TTCTTGGGCTATATGGTTCACCAGGAATGACTCCATATTTTAAAGGCCTTCCCCCAAACCTATATTTTTGCGGGAGGATA
-TTTAAAAAAGAGATGCAC-TGGATTACCTACAGAGCAGCTACTATGGAGGCTTTCAAGCATGGGTTGATGCATTCAAAT
AATTGACATGGCAGTTGTCATAGTTTTGTTGTACAGAACATTTTGTACCTATTTTTGTTTGAAAACCAATAAAAATACGC
AACAGAGTCGTGCAGCTTCCCTTAAGAAAAATCCAATCCTCCTCGAACAAAAAAAAGGCAATCTAATCTATGAACCTGGA
CAATCTTTTAGTTTTCTTAGACAAGAA-----------------------------------------------------
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----AATGGCAAAGCCTAATCTAGAAACCTGCGAATAATCCCTGCATGAGGAAGCCGCATCTACTCCACCTGTTAATTAG
GTCGGGGAGTAATTATACCCCTTCTCTTCTCGGACAAACTAATGTACCCTTGTCAGCTCTGCACTGAACTCAATACGTCC
AATAATAGGTGAGCCCCTCCTACCTACCTGACGAGGCGCCACTCACTTCACTTCACTTCCCCTATAAACTCCCCGCAGCA
TCCACCACGCTCTCACTCCATTCACCGCGCACAACCACCTCCCC-GCTCTCTCCAGCCGAGCTG-----GCTAGAGAGCG
AGCCCAAGGAGCTAGCTGAGCCCGCTTCGAGGCAAGAATTCAAAGCGCCATGCTGGGCTGCTTCTCCCGGCTCCGGCGGC
CGTCCTCTGCCGCGCCAGGGGCGCCGGCGCCCGTGCAGCCGCCCGACGAGGCGTCCACGTCGGCCGCGTCGACCTCCACC
CCGGCGACCTCCCCGCGCTCGTCCTCCTCCTCCGCCCGCTTCAAGAACGCGTGCCTCCGGGACGGCGGCAGGGGCGGGGA
CGCCGA------CGTCGCGAAGGAGTGCCCGC---TGTCGTCCGCGCTCGCCGTGGACTCCGGGCTGTCGTCGGCCATCG
CGTCGCGGCGGTTCTTCCTCGCCTCCCCGGGCCGGTCCAACTCCATCGTGGACTCGTCGGCGGCGCACGCGGCGGCCGTC
CTGGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACCTACTCCCCGGACCCGCACGCCGACTTCCTGCGGTCCATGGAGGA
GATGTCGGCGGCGCTGCGGCTGGACGCGCGGCGGCGCGGCGACAGGGCGCGCCTCCACGAGCTGCTGCTCTGCTACCTCG
CTCTCAACGACAAGCGCGCGCACCGCTACATCGTCAGCGCCTTCACCGACCTCCTCCTCCGCCTCACCGCCACCGACGAC
CTCGACGCCGACGA---GCAGCACGGCAGCATGTAGCAGCTGCGTCGACGTGCCTGCCTGCCTGCCTGCCTGCGGAGCTC
AACACGTTCGTCCATTTCTCATAT--TTTTTTGGGGTGCAAGATGCTGGTGCTGTGTGC-TCAGTTCCCAGCAGACAGGC
CATGCATCTGATCTGACTGTAAAAAAAATTGTTCGTGTGCAATTTCGTGGC---AAAAGCCGCTTTGTACCTTTGTGTGG
GCGTTG----CTTTTGCTCTTTATGAAAGGCGTGAGCGTGCTAGCGAAGACGGGGAATATCTTAGCTTCTACAATTGCAC
CGCTTTGCTTCTTTGTGTAATTGCGTTTGTCTTTTCGGCCACCTCCCTGCTCTTTTCACTGTGTCCTTTATCTTTCTGTT
GCGGCATCTGAAGGCTAGTTTAG--CACTAAATAGAGTGTGCGCACAGGTCATGTCAGACAAGGTTATGCCGTGACCGTT
TATACTCCCTCGGTCTCTAAATATAAGTCTTTTTAGAGATTTCAATAAGAGACTACATACGGAGCAACATAAGTGAATCT
ACACTCTAACATATATCTATATATATATCTATATTTAATTTGCATTGATATCTTTAAGAAAAACTTATATTTAGGAACGG
AGGTAATATACT-------GTAGTAAATGTGAATACAGCTCTGTCGTTTTTTTACTCTTGGACCGAGTAATTTTGGGATC
GCCATTTGCAATTGCGCCACGCACCTTGAGACGGGCGAGAGAGA--GGGGGTCTTCGGATCC------------------
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-------------------------------------------AGCAGCAGGACGCAATAATAAACAGACGCCGTGCAAA
ACCAACCGCCGCCGTACGCGCATAGCCTCACTCTGTCACTCACACGGGCAGCTCTGCCCTGCTCACACATGGCCGCTGTA
CTGAACTATTCCGCCGAC-----GGATAGATCGTGGACGCGTGGTAAACCAGTAACCATCACGCACCAATCTTT-TCCTC
TTGTTCGAGAGGAC----CCGTCCGAAATTAAGAAGA--
>chr4A_649
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---------------CTAATCTAGGAACCTGCGAATAATCCCTGCATGAGGAAGCCGCATCTACTCCGCCTGTTAATTAG
GCCGGGGAGTAAC--TACCCCTTCTCTTCTCGGACAAACTAGTGTCCCTTTGTCAGCTCTGCACTGAACTCAATACGTCC
AATTATAGGTGAGCCCCTCCTACCAACCTGACGAGGCGCCACTCACTTCACTCCACTTCCCCTATAAACTCCCCGCAGCA
TCCACCACGCTCTCCCTCCATTCACCGCGCACAACCACCTCCCCCACTCTCTCCAGCCAAGCTG-----GCTAGAGAGCG
AGCCCAGGGAGCTAGCTGAGCCCGCTTCGAGGCAAGAATTCAAAGCGCCATGCTGGGCTGCTTCTCCCGGCTCCGGCGGC
CGGCCTCCGCCGCGGCCGGGGCGCCGGCTCCCGTGCAGCCGCCCGACGAGGCGTCCACGTCGGCCTCCACACCGGA----
-----GACCTCCCCGCGCTCGTCCTCCTCCTCCGCCCGCTTCAAGAGCGCGTGCCTCCGGGACGGCGGCAGGGGCGGGGA
CGTGGATGTGACCGTCGCGAAGGAGTGCCCGCCGCTGTCGTCCATGCTCGCCGTGGACTCCGGGCTGTCGTCGGCCATCG
CGTCCCGGCGGTTCTTCCTCGCCTCCCCGGGCCGGTCCAACTCCATCGTGGACTCGTCGGCGGCGCACGCGGCCGCCGTG
CTGGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACCTACTCCCCGGACCCGCACGCCGACTTCCTGCGGTCCATGGAGGA
GATGTCGGCGGCGCTGCGGCTGGACGCGCGGCGGCGCGGCGACCGGGCGCGCCTCCACGAGCTGCTGCTCTGCTACCTGG
CGCTCAACGACAAGCGCGCGCACCGGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCCTCACCGCCACCGACGAC
CTCGACGCCGACGACGAGCAGCACAGCAGCATGTAGCAGCCGCGCCGACGTGCCTGCCTGCCTGCCTGCCTGCAGAGCTC
AACACTTTCGTCCATTATTTCTCATATTTTTTCGGGTGCAAGATGCTGGTGCTGTGTGC-TCAGTTCCCAGCAGACAGGC
CATGCATCTGATCTGACTGTAAAAAGAATTGTTCGTGTGCAATTTCGCGGCAAAAAAAGCCGCTTTGTACCTTTGTGTGG
GCGTTGGCTGCTTTTGCCCTTTATGAAAGGCGTGAGCGTGCTAGCGAAGACGGGGAATATCTTAGCTTCCACAATTGCAC
CGCTTTGTTTCTTTGTGTAATTGCGTTTGTCTTTTCAGCCACCTCCCCGCGCTTTCA-------CCTTTAGCTTTGTGTT
GGGGCATCTGAAGGCTAGTTTGGTA-------------------------CATGTCAGGCATGGTTATGCCGTGACCATT
GCTTTG--------------------------------------------------------------------------
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--------TACGTAGACACGTAGTAAATGTGAATGCAATTCTGTCATTTTACT-CTCTTGGACCGAGTAATTTTGGGATC
GCCACA---------------CACCTTGAGACGGGCGAGAGGGGGGGGGGGTCTTCGGATCC------------------
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-------------------------------------------AGCAGCGGGACGCAATAATAAACAGACGCCGTGCAAA
ACCAACCGCCGCCGTACGCGCATAGGCTCACTCTGTCACTCACAC-----------------------ATGGCCGCTGTA
CTCAACTATTCCGTCGAC-----GGATAGATCGCGGACGCGTGGTAAACCAGTAACCATCACGCGCCAATCTTTTTCCTC
TGGTTCGAGATCACGCGGCCGGCCGAAATTAAGAGGATT
>SNPs
--------S----S--S---S--S--------S---S----------------------------S-----S--------
S--S---------------S------------------S---------------S----S--------------------
----------------S---------------------------------S--S-----------S-S------------
-S--S----S-----S-----------------S-------------S----S---------------------------
S--------------S--S--S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS--S-----------------------------S-------------------------------------------
---------------S----------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------SSSSSSS-----------
----------------S---------------------------------------------------------------
----------------S-----------S---------------------------------------------------
-----------------------------S--------------------------------------------------
----------------------------------------S---------------------------------------
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-------------------------------------------------------------------S------------
--------------------------------------------------------SS-S--------------------
--------------------------SSS---------------------------------------------------
------------------------------------------S------------------------------S------
------------------------------------------S--SS-----------------------------S---
-------------------------------------------------S------------------------------
S-------------------------------------------------------------------------------
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-----------S---------------------------S------S---------------------------------
----------------SSS---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
-------------------------------------------------------------------------S------
---S---S-S-S--S-SSSSSSS--------------------------------------------------S------
-S------------S-------------------S----
>forward_436
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----------------TCAAATCCTGGTGCTCGCAT--------------------------------------------
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>reverse_1668
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-------------------------------------------------------------------CCCTGCAGAGCTC
AACACTT-------------------------------------------------------------------------
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