Multiple sequence alignment - TraesCS4D01G273700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G273700 chr4D 100.000 3515 0 0 1 3515 443731288 443734802 0.000000e+00 6492.0
1 TraesCS4D01G273700 chr4A 89.978 2325 167 29 987 3269 24161134 24158834 0.000000e+00 2942.0
2 TraesCS4D01G273700 chr4A 97.222 180 5 0 1 180 24161464 24161285 4.410000e-79 305.0
3 TraesCS4D01G273700 chr4A 85.657 251 17 7 3265 3515 24158474 24158243 2.710000e-61 246.0
4 TraesCS4D01G273700 chr4B 93.051 1252 73 5 886 2137 553256921 553258158 0.000000e+00 1818.0
5 TraesCS4D01G273700 chr4B 95.812 382 16 0 1 382 553256063 553256444 4.990000e-173 617.0
6 TraesCS4D01G273700 chr4B 94.894 235 9 3 3220 3454 553258191 553258422 7.170000e-97 364.0
7 TraesCS4D01G273700 chr5A 76.526 426 79 10 1618 2040 4121518 4121925 2.750000e-51 213.0
8 TraesCS4D01G273700 chr5A 80.374 107 21 0 1598 1704 688937575 688937681 8.090000e-12 82.4
9 TraesCS4D01G273700 chr6B 79.757 247 48 2 1585 1830 707248788 707249033 1.000000e-40 178.0
10 TraesCS4D01G273700 chr6B 75.986 279 64 1 11 289 707329039 707328764 1.320000e-29 141.0
11 TraesCS4D01G273700 chr6B 75.735 272 63 1 18 289 707242880 707243148 2.200000e-27 134.0
12 TraesCS4D01G273700 chr6A 76.471 289 61 4 3 289 610516941 610516658 2.190000e-32 150.0
13 TraesCS4D01G273700 chr6A 76.838 272 60 1 18 289 610521683 610521415 2.190000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G273700 chr4D 443731288 443734802 3514 False 6492.000000 6492 100.000000 1 3515 1 chr4D.!!$F1 3514
1 TraesCS4D01G273700 chr4A 24158243 24161464 3221 True 1164.333333 2942 90.952333 1 3515 3 chr4A.!!$R1 3514
2 TraesCS4D01G273700 chr4B 553256063 553258422 2359 False 933.000000 1818 94.585667 1 3454 3 chr4B.!!$F1 3453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 684 0.038744 ACACCCTCAAAGCAGGATGG 59.961 55.0 0.00 0.0 35.2 3.51 F
788 858 0.114954 TGGCCAGGCAGAATTTTCCT 59.885 50.0 15.19 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 2512 0.108207 CATCTTAGGAGCTGCCCCAG 59.892 60.0 2.14 0.0 37.37 4.45 R
2777 2866 0.525761 AAACAAACATATGCGCGGCT 59.474 45.0 8.83 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.309950 GCCGAGTCCCACAACCGT 62.310 66.667 0.00 0.00 0.00 4.83
190 191 1.237285 GCTTTGTGCGGACCATGTCT 61.237 55.000 4.04 0.00 32.47 3.41
205 206 4.155733 TCTGCCCGCCACCGTATG 62.156 66.667 0.00 0.00 0.00 2.39
314 315 2.592861 GCACCATCCCCGATGCTC 60.593 66.667 0.00 0.00 38.59 4.26
358 359 2.206536 GGAGGAGGAGGATCTGCGG 61.207 68.421 0.00 0.00 33.73 5.69
380 381 0.039437 ACGTGAGTTGCTCTACGGTG 60.039 55.000 17.84 0.00 46.40 4.94
381 382 0.240145 CGTGAGTTGCTCTACGGTGA 59.760 55.000 10.78 0.00 34.25 4.02
382 383 1.335597 CGTGAGTTGCTCTACGGTGAA 60.336 52.381 10.78 0.00 34.25 3.18
383 384 2.059541 GTGAGTTGCTCTACGGTGAAC 58.940 52.381 0.00 0.00 0.00 3.18
384 385 1.000506 TGAGTTGCTCTACGGTGAACC 59.999 52.381 0.00 0.00 0.00 3.62
385 386 1.000506 GAGTTGCTCTACGGTGAACCA 59.999 52.381 0.00 0.00 35.14 3.67
386 387 1.145803 GTTGCTCTACGGTGAACCAC 58.854 55.000 0.00 0.00 35.14 4.16
394 395 2.826702 GGTGAACCACCGGACACT 59.173 61.111 9.46 0.00 44.95 3.55
395 396 2.051941 GGTGAACCACCGGACACTA 58.948 57.895 9.46 0.00 44.95 2.74
396 397 0.611714 GGTGAACCACCGGACACTAT 59.388 55.000 9.46 0.00 44.95 2.12
397 398 1.826720 GGTGAACCACCGGACACTATA 59.173 52.381 9.46 0.00 44.95 1.31
406 407 2.512896 ACCGGACACTATAGAGGAGGAA 59.487 50.000 9.46 0.00 0.00 3.36
408 409 3.570550 CCGGACACTATAGAGGAGGAAAG 59.429 52.174 6.78 0.00 0.00 2.62
419 420 1.202940 AGGAGGAAAGCAACAAGGTCC 60.203 52.381 0.00 0.00 0.00 4.46
421 422 1.882623 GAGGAAAGCAACAAGGTCCTG 59.117 52.381 0.00 0.00 38.85 3.86
422 423 1.494721 AGGAAAGCAACAAGGTCCTGA 59.505 47.619 0.00 0.00 37.33 3.86
430 431 2.874701 CAACAAGGTCCTGAAGTGTCTG 59.125 50.000 0.00 0.00 0.00 3.51
432 433 1.071385 CAAGGTCCTGAAGTGTCTGCT 59.929 52.381 0.00 0.00 0.00 4.24
433 434 1.428869 AGGTCCTGAAGTGTCTGCTT 58.571 50.000 0.00 0.00 0.00 3.91
434 435 1.771255 AGGTCCTGAAGTGTCTGCTTT 59.229 47.619 0.00 0.00 0.00 3.51
436 437 3.067833 GGTCCTGAAGTGTCTGCTTTAC 58.932 50.000 0.00 0.00 0.00 2.01
437 438 3.494398 GGTCCTGAAGTGTCTGCTTTACA 60.494 47.826 0.00 0.00 0.00 2.41
439 440 4.574828 GTCCTGAAGTGTCTGCTTTACAAA 59.425 41.667 0.00 0.00 0.00 2.83
440 441 4.816385 TCCTGAAGTGTCTGCTTTACAAAG 59.184 41.667 0.00 0.00 39.03 2.77
442 443 5.296780 CCTGAAGTGTCTGCTTTACAAAGAA 59.703 40.000 5.89 0.00 38.28 2.52
443 444 6.016777 CCTGAAGTGTCTGCTTTACAAAGAAT 60.017 38.462 5.89 0.00 38.28 2.40
444 445 7.333528 TGAAGTGTCTGCTTTACAAAGAATT 57.666 32.000 5.89 0.00 38.28 2.17
445 446 7.771183 TGAAGTGTCTGCTTTACAAAGAATTT 58.229 30.769 5.89 0.00 40.26 1.82
461 462 6.519679 AAGAATTTGTTCATGATGCTAGCA 57.480 33.333 21.85 21.85 0.00 3.49
462 463 6.710597 AGAATTTGTTCATGATGCTAGCAT 57.289 33.333 29.97 29.97 39.69 3.79
463 464 7.108841 AGAATTTGTTCATGATGCTAGCATT 57.891 32.000 30.08 13.80 36.70 3.56
464 465 6.978659 AGAATTTGTTCATGATGCTAGCATTG 59.021 34.615 30.08 24.13 36.70 2.82
465 466 5.900865 TTTGTTCATGATGCTAGCATTGA 57.099 34.783 30.08 25.87 36.70 2.57
466 467 5.900865 TTGTTCATGATGCTAGCATTGAA 57.099 34.783 28.80 28.80 36.70 2.69
467 468 5.900865 TGTTCATGATGCTAGCATTGAAA 57.099 34.783 31.87 23.03 35.94 2.69
468 469 5.886992 TGTTCATGATGCTAGCATTGAAAG 58.113 37.500 31.87 20.91 35.94 2.62
469 470 5.416639 TGTTCATGATGCTAGCATTGAAAGT 59.583 36.000 31.87 14.00 35.94 2.66
470 471 5.746307 TCATGATGCTAGCATTGAAAGTC 57.254 39.130 30.08 17.24 36.70 3.01
471 472 5.187687 TCATGATGCTAGCATTGAAAGTCA 58.812 37.500 30.08 22.06 36.70 3.41
472 473 5.648960 TCATGATGCTAGCATTGAAAGTCAA 59.351 36.000 30.08 7.04 41.09 3.18
473 474 5.963176 TGATGCTAGCATTGAAAGTCAAA 57.037 34.783 30.08 0.18 40.12 2.69
474 475 5.946298 TGATGCTAGCATTGAAAGTCAAAG 58.054 37.500 30.08 0.00 40.12 2.77
483 484 7.969387 GCATTGAAAGTCAAAGCGATTATAA 57.031 32.000 2.83 0.00 40.49 0.98
484 485 7.821735 GCATTGAAAGTCAAAGCGATTATAAC 58.178 34.615 2.83 0.00 40.49 1.89
485 486 7.484641 GCATTGAAAGTCAAAGCGATTATAACA 59.515 33.333 2.83 0.00 40.49 2.41
486 487 9.340695 CATTGAAAGTCAAAGCGATTATAACAA 57.659 29.630 0.00 0.00 40.12 2.83
487 488 8.948853 TTGAAAGTCAAAGCGATTATAACAAG 57.051 30.769 0.00 0.00 32.71 3.16
488 489 8.317891 TGAAAGTCAAAGCGATTATAACAAGA 57.682 30.769 0.00 0.00 0.00 3.02
489 490 8.443160 TGAAAGTCAAAGCGATTATAACAAGAG 58.557 33.333 0.00 0.00 0.00 2.85
490 491 6.910536 AGTCAAAGCGATTATAACAAGAGG 57.089 37.500 0.00 0.00 0.00 3.69
491 492 6.640518 AGTCAAAGCGATTATAACAAGAGGA 58.359 36.000 0.00 0.00 0.00 3.71
492 493 7.103641 AGTCAAAGCGATTATAACAAGAGGAA 58.896 34.615 0.00 0.00 0.00 3.36
493 494 7.278868 AGTCAAAGCGATTATAACAAGAGGAAG 59.721 37.037 0.00 0.00 0.00 3.46
494 495 7.064728 GTCAAAGCGATTATAACAAGAGGAAGT 59.935 37.037 0.00 0.00 0.00 3.01
495 496 8.255206 TCAAAGCGATTATAACAAGAGGAAGTA 58.745 33.333 0.00 0.00 0.00 2.24
496 497 8.328864 CAAAGCGATTATAACAAGAGGAAGTAC 58.671 37.037 0.00 0.00 0.00 2.73
497 498 7.108841 AGCGATTATAACAAGAGGAAGTACA 57.891 36.000 0.00 0.00 0.00 2.90
498 499 7.203910 AGCGATTATAACAAGAGGAAGTACAG 58.796 38.462 0.00 0.00 0.00 2.74
499 500 6.421202 GCGATTATAACAAGAGGAAGTACAGG 59.579 42.308 0.00 0.00 0.00 4.00
520 521 6.013379 ACAGGTTGATCTGTATTGAAGGAGAA 60.013 38.462 0.00 0.00 45.18 2.87
539 540 0.834687 AGGTAGCGTGGGGAAGACAA 60.835 55.000 0.00 0.00 0.00 3.18
540 541 0.672711 GGTAGCGTGGGGAAGACAAC 60.673 60.000 0.00 0.00 0.00 3.32
549 550 1.066430 GGGGAAGACAACTATCGCACA 60.066 52.381 0.00 0.00 0.00 4.57
556 557 3.762288 AGACAACTATCGCACAGAAGGTA 59.238 43.478 0.00 0.00 0.00 3.08
566 567 2.416836 GCACAGAAGGTATACGAGCACA 60.417 50.000 0.00 0.00 0.00 4.57
580 581 1.961277 GCACACTTCCGTGGTGAGG 60.961 63.158 6.65 1.20 45.50 3.86
581 582 1.445942 CACACTTCCGTGGTGAGGT 59.554 57.895 6.65 0.00 45.50 3.85
582 583 0.600255 CACACTTCCGTGGTGAGGTC 60.600 60.000 6.65 0.00 45.50 3.85
583 584 1.004918 CACTTCCGTGGTGAGGTCC 60.005 63.158 0.00 0.00 37.50 4.46
609 610 3.008835 CCACATGGTCTGGATCAACAT 57.991 47.619 0.00 0.00 0.00 2.71
612 613 3.760151 CACATGGTCTGGATCAACATTGT 59.240 43.478 0.00 0.00 0.00 2.71
614 615 5.415389 CACATGGTCTGGATCAACATTGTAA 59.585 40.000 0.00 0.00 0.00 2.41
615 616 6.009589 ACATGGTCTGGATCAACATTGTAAA 58.990 36.000 0.00 0.00 0.00 2.01
617 618 5.630121 TGGTCTGGATCAACATTGTAAAGT 58.370 37.500 0.00 0.00 0.00 2.66
618 619 5.705441 TGGTCTGGATCAACATTGTAAAGTC 59.295 40.000 0.00 0.00 0.00 3.01
620 621 5.408604 GTCTGGATCAACATTGTAAAGTCGT 59.591 40.000 0.00 0.00 0.00 4.34
625 626 6.183360 GGATCAACATTGTAAAGTCGTACAGG 60.183 42.308 0.00 0.00 35.47 4.00
626 627 4.449743 TCAACATTGTAAAGTCGTACAGGC 59.550 41.667 0.00 0.00 35.47 4.85
632 633 7.335924 ACATTGTAAAGTCGTACAGGCAATATT 59.664 33.333 0.00 0.00 35.47 1.28
633 634 6.897259 TGTAAAGTCGTACAGGCAATATTC 57.103 37.500 0.00 0.00 30.48 1.75
634 635 6.636705 TGTAAAGTCGTACAGGCAATATTCT 58.363 36.000 0.00 0.00 30.48 2.40
638 639 3.491267 GTCGTACAGGCAATATTCTGAGC 59.509 47.826 10.31 0.00 35.20 4.26
640 641 4.122776 CGTACAGGCAATATTCTGAGCTT 58.877 43.478 10.31 0.00 35.20 3.74
643 644 2.032204 CAGGCAATATTCTGAGCTTCGC 60.032 50.000 0.00 0.00 33.11 4.70
645 646 2.032204 GGCAATATTCTGAGCTTCGCAG 60.032 50.000 0.00 0.00 32.70 5.18
656 657 1.957877 AGCTTCGCAGGGAGATACTAC 59.042 52.381 0.00 0.00 0.00 2.73
667 668 6.331061 CAGGGAGATACTACAACAACTACAC 58.669 44.000 0.00 0.00 0.00 2.90
669 670 5.394993 GGGAGATACTACAACAACTACACCC 60.395 48.000 0.00 0.00 0.00 4.61
670 671 5.421374 GGAGATACTACAACAACTACACCCT 59.579 44.000 0.00 0.00 0.00 4.34
671 672 6.405619 GGAGATACTACAACAACTACACCCTC 60.406 46.154 0.00 0.00 0.00 4.30
672 673 6.014647 AGATACTACAACAACTACACCCTCA 58.985 40.000 0.00 0.00 0.00 3.86
673 674 6.495872 AGATACTACAACAACTACACCCTCAA 59.504 38.462 0.00 0.00 0.00 3.02
674 675 5.362105 ACTACAACAACTACACCCTCAAA 57.638 39.130 0.00 0.00 0.00 2.69
675 676 5.365619 ACTACAACAACTACACCCTCAAAG 58.634 41.667 0.00 0.00 0.00 2.77
678 679 2.851195 ACAACTACACCCTCAAAGCAG 58.149 47.619 0.00 0.00 0.00 4.24
683 684 0.038744 ACACCCTCAAAGCAGGATGG 59.961 55.000 0.00 0.00 35.20 3.51
695 696 1.545428 GCAGGATGGTCAGTTTGTGGA 60.545 52.381 0.00 0.00 35.86 4.02
697 698 2.816087 CAGGATGGTCAGTTTGTGGAAG 59.184 50.000 0.00 0.00 0.00 3.46
698 699 2.162681 GGATGGTCAGTTTGTGGAAGG 58.837 52.381 0.00 0.00 0.00 3.46
699 700 2.224769 GGATGGTCAGTTTGTGGAAGGA 60.225 50.000 0.00 0.00 0.00 3.36
702 703 2.441375 TGGTCAGTTTGTGGAAGGATGA 59.559 45.455 0.00 0.00 0.00 2.92
707 708 3.254166 CAGTTTGTGGAAGGATGACAAGG 59.746 47.826 0.00 0.00 31.50 3.61
709 710 3.874383 TTGTGGAAGGATGACAAGGAA 57.126 42.857 0.00 0.00 0.00 3.36
713 714 3.691609 GTGGAAGGATGACAAGGAATCAC 59.308 47.826 0.00 0.00 0.00 3.06
714 715 3.330405 TGGAAGGATGACAAGGAATCACA 59.670 43.478 0.00 0.00 0.00 3.58
717 718 5.243730 GGAAGGATGACAAGGAATCACAAAA 59.756 40.000 0.00 0.00 0.00 2.44
719 720 7.122650 GGAAGGATGACAAGGAATCACAAAATA 59.877 37.037 0.00 0.00 0.00 1.40
720 721 7.636150 AGGATGACAAGGAATCACAAAATAG 57.364 36.000 0.00 0.00 0.00 1.73
721 722 6.096001 AGGATGACAAGGAATCACAAAATAGC 59.904 38.462 0.00 0.00 0.00 2.97
725 726 4.142600 ACAAGGAATCACAAAATAGCGAGC 60.143 41.667 0.00 0.00 0.00 5.03
726 727 3.878778 AGGAATCACAAAATAGCGAGCT 58.121 40.909 2.25 2.25 0.00 4.09
728 729 4.333926 AGGAATCACAAAATAGCGAGCTTC 59.666 41.667 1.86 0.00 0.00 3.86
732 733 4.065088 TCACAAAATAGCGAGCTTCTGTT 58.935 39.130 1.86 0.00 0.00 3.16
733 734 4.515191 TCACAAAATAGCGAGCTTCTGTTT 59.485 37.500 1.86 6.05 0.00 2.83
735 736 4.161333 CAAAATAGCGAGCTTCTGTTTGG 58.839 43.478 1.86 6.02 0.00 3.28
737 738 3.887621 ATAGCGAGCTTCTGTTTGGTA 57.112 42.857 1.86 0.00 0.00 3.25
738 739 2.543777 AGCGAGCTTCTGTTTGGTAA 57.456 45.000 0.00 0.00 0.00 2.85
741 742 3.251004 AGCGAGCTTCTGTTTGGTAAAAG 59.749 43.478 0.00 0.00 0.00 2.27
743 744 3.003275 CGAGCTTCTGTTTGGTAAAAGCA 59.997 43.478 7.98 0.00 43.65 3.91
749 750 6.803807 GCTTCTGTTTGGTAAAAGCATTCTAG 59.196 38.462 0.00 0.00 41.46 2.43
752 753 6.995686 TCTGTTTGGTAAAAGCATTCTAGTCA 59.004 34.615 0.00 0.00 0.00 3.41
757 758 7.615582 TGGTAAAAGCATTCTAGTCATTCTG 57.384 36.000 0.00 0.00 0.00 3.02
762 763 4.387598 AGCATTCTAGTCATTCTGGATGC 58.612 43.478 0.00 0.00 37.85 3.91
763 764 3.501445 GCATTCTAGTCATTCTGGATGCC 59.499 47.826 0.00 0.00 35.02 4.40
767 768 0.179100 AGTCATTCTGGATGCCGTCG 60.179 55.000 0.00 0.00 35.64 5.12
768 769 1.143838 TCATTCTGGATGCCGTCGG 59.856 57.895 6.99 6.99 35.64 4.79
771 772 2.593468 ATTCTGGATGCCGTCGGTGG 62.593 60.000 13.94 0.00 0.00 4.61
781 782 4.329545 GTCGGTGGCCAGGCAGAA 62.330 66.667 15.19 0.00 0.00 3.02
782 783 3.329889 TCGGTGGCCAGGCAGAAT 61.330 61.111 15.19 0.00 0.00 2.40
788 858 0.114954 TGGCCAGGCAGAATTTTCCT 59.885 50.000 15.19 0.00 0.00 3.36
789 859 0.533951 GGCCAGGCAGAATTTTCCTG 59.466 55.000 15.19 12.15 45.24 3.86
792 862 2.517959 CCAGGCAGAATTTTCCTGTGA 58.482 47.619 15.76 0.00 44.41 3.58
794 864 3.321682 CCAGGCAGAATTTTCCTGTGAAA 59.678 43.478 15.76 0.00 44.41 2.69
797 867 6.295236 CCAGGCAGAATTTTCCTGTGAAATAA 60.295 38.462 15.76 0.00 44.41 1.40
800 870 6.368791 GGCAGAATTTTCCTGTGAAATAAACC 59.631 38.462 0.00 0.00 40.08 3.27
809 879 6.289834 TCCTGTGAAATAAACCGTGACTTTA 58.710 36.000 0.00 0.00 0.00 1.85
811 881 6.348213 CCTGTGAAATAAACCGTGACTTTAGG 60.348 42.308 0.00 0.00 0.00 2.69
813 883 5.049267 GTGAAATAAACCGTGACTTTAGGCA 60.049 40.000 0.00 0.00 0.00 4.75
814 884 5.708230 TGAAATAAACCGTGACTTTAGGCAT 59.292 36.000 0.00 0.00 0.00 4.40
815 885 6.207810 TGAAATAAACCGTGACTTTAGGCATT 59.792 34.615 0.00 0.00 0.00 3.56
816 886 7.390996 TGAAATAAACCGTGACTTTAGGCATTA 59.609 33.333 0.00 0.00 0.00 1.90
817 887 7.875327 AATAAACCGTGACTTTAGGCATTAT 57.125 32.000 0.00 0.00 0.00 1.28
823 893 5.050091 CCGTGACTTTAGGCATTATGATGTC 60.050 44.000 0.00 0.00 38.17 3.06
828 898 1.233019 AGGCATTATGATGTCTGCGC 58.767 50.000 3.43 0.00 46.14 6.09
829 899 1.202734 AGGCATTATGATGTCTGCGCT 60.203 47.619 9.73 0.00 46.14 5.92
830 900 2.037641 AGGCATTATGATGTCTGCGCTA 59.962 45.455 9.73 0.00 46.14 4.26
831 901 2.807967 GGCATTATGATGTCTGCGCTAA 59.192 45.455 9.73 0.00 35.00 3.09
832 902 3.438087 GGCATTATGATGTCTGCGCTAAT 59.562 43.478 9.73 0.00 35.00 1.73
833 903 4.631377 GGCATTATGATGTCTGCGCTAATA 59.369 41.667 9.73 0.00 35.00 0.98
834 904 5.220548 GGCATTATGATGTCTGCGCTAATAG 60.221 44.000 9.73 0.00 35.00 1.73
835 905 5.349817 GCATTATGATGTCTGCGCTAATAGT 59.650 40.000 9.73 0.00 35.63 2.12
836 906 6.671641 GCATTATGATGTCTGCGCTAATAGTG 60.672 42.308 9.73 0.00 35.63 2.74
837 907 9.911857 GCATTATGATGTCTGCGCTAATAGTGC 62.912 44.444 18.03 18.03 42.29 4.40
857 927 6.357367 AGTGCTCTAATAATGACCGGAAATT 58.643 36.000 9.46 10.13 0.00 1.82
864 934 9.116067 TCTAATAATGACCGGAAATTACTTTGG 57.884 33.333 9.46 6.39 0.00 3.28
866 936 5.385509 AATGACCGGAAATTACTTTGGTG 57.614 39.130 9.46 0.00 0.00 4.17
868 938 3.816523 TGACCGGAAATTACTTTGGTGAC 59.183 43.478 9.46 0.00 0.00 3.67
869 939 4.070009 GACCGGAAATTACTTTGGTGACT 58.930 43.478 9.46 0.00 0.00 3.41
870 940 3.818773 ACCGGAAATTACTTTGGTGACTG 59.181 43.478 9.46 0.00 0.00 3.51
871 941 3.190535 CCGGAAATTACTTTGGTGACTGG 59.809 47.826 0.00 0.00 0.00 4.00
872 942 4.069304 CGGAAATTACTTTGGTGACTGGA 58.931 43.478 0.00 0.00 0.00 3.86
873 943 4.700213 CGGAAATTACTTTGGTGACTGGAT 59.300 41.667 0.00 0.00 0.00 3.41
874 944 5.183140 CGGAAATTACTTTGGTGACTGGATT 59.817 40.000 0.00 0.00 0.00 3.01
875 945 6.389906 GGAAATTACTTTGGTGACTGGATTG 58.610 40.000 0.00 0.00 0.00 2.67
876 946 5.982890 AATTACTTTGGTGACTGGATTGG 57.017 39.130 0.00 0.00 0.00 3.16
877 947 4.447138 TTACTTTGGTGACTGGATTGGT 57.553 40.909 0.00 0.00 0.00 3.67
878 948 2.586425 ACTTTGGTGACTGGATTGGTG 58.414 47.619 0.00 0.00 0.00 4.17
879 949 2.174639 ACTTTGGTGACTGGATTGGTGA 59.825 45.455 0.00 0.00 0.00 4.02
880 950 3.181429 ACTTTGGTGACTGGATTGGTGAT 60.181 43.478 0.00 0.00 0.00 3.06
881 951 2.495155 TGGTGACTGGATTGGTGATG 57.505 50.000 0.00 0.00 0.00 3.07
882 952 1.984424 TGGTGACTGGATTGGTGATGA 59.016 47.619 0.00 0.00 0.00 2.92
883 953 2.577563 TGGTGACTGGATTGGTGATGAT 59.422 45.455 0.00 0.00 0.00 2.45
884 954 2.947652 GGTGACTGGATTGGTGATGATG 59.052 50.000 0.00 0.00 0.00 3.07
891 961 3.228453 GGATTGGTGATGATGCAGGATT 58.772 45.455 0.00 0.00 0.00 3.01
893 963 4.261909 GGATTGGTGATGATGCAGGATTTC 60.262 45.833 0.00 0.00 0.00 2.17
896 966 5.051409 TGGTGATGATGCAGGATTTCATA 57.949 39.130 0.00 0.00 30.48 2.15
958 1028 1.250328 CAAGAGCATTGGACCTTGCA 58.750 50.000 18.38 0.00 41.35 4.08
969 1039 2.024414 GGACCTTGCAAAGTGTGAAGT 58.976 47.619 5.18 0.00 44.25 3.01
972 1042 4.494484 GACCTTGCAAAGTGTGAAGTTTT 58.506 39.130 5.18 0.00 44.25 2.43
1001 1071 5.124936 GGACAAGAGTATTGGCCGTTTTAAT 59.875 40.000 6.63 0.00 37.92 1.40
1002 1072 5.949735 ACAAGAGTATTGGCCGTTTTAATG 58.050 37.500 2.04 0.00 0.00 1.90
1016 1086 4.150980 CGTTTTAATGAAGTGCTACCACGA 59.849 41.667 0.00 0.00 46.62 4.35
1017 1087 5.163893 CGTTTTAATGAAGTGCTACCACGAT 60.164 40.000 0.00 0.00 46.62 3.73
1021 1091 2.453521 TGAAGTGCTACCACGATACCT 58.546 47.619 0.00 0.00 46.62 3.08
1027 1097 1.664151 GCTACCACGATACCTTTGCAC 59.336 52.381 0.00 0.00 0.00 4.57
1028 1098 2.677037 GCTACCACGATACCTTTGCACT 60.677 50.000 0.00 0.00 0.00 4.40
1133 1203 7.550906 GGAGAACAGAAACAATACTGCTAAGAT 59.449 37.037 0.00 0.00 37.61 2.40
1135 1205 6.428385 ACAGAAACAATACTGCTAAGATGC 57.572 37.500 0.00 0.00 37.61 3.91
1510 1580 3.054655 TGGGGTAGCAATACAGGAAGAAC 60.055 47.826 0.00 0.00 0.00 3.01
1530 1600 5.779771 AGAACCTCTTTCTGAGTCTGATTCT 59.220 40.000 0.01 3.54 43.45 2.40
1573 1643 7.761704 GCATCTTAACTACAATTGAGTCTCTGA 59.238 37.037 13.59 8.33 0.00 3.27
1583 1653 6.014755 ACAATTGAGTCTCTGACTGAATCTGA 60.015 38.462 13.59 0.00 43.45 3.27
1662 1738 7.885297 AGAAGCATCTAAACAGTATTTGCAAA 58.115 30.769 15.44 15.44 32.88 3.68
1853 1929 2.040545 AGAGAGACTCTCCGACTCCAAA 59.959 50.000 25.70 0.00 44.42 3.28
1857 1933 2.900546 AGACTCTCCGACTCCAAACAAT 59.099 45.455 0.00 0.00 0.00 2.71
1858 1934 2.996621 GACTCTCCGACTCCAAACAATG 59.003 50.000 0.00 0.00 0.00 2.82
1859 1935 2.632996 ACTCTCCGACTCCAAACAATGA 59.367 45.455 0.00 0.00 0.00 2.57
1860 1936 2.996621 CTCTCCGACTCCAAACAATGAC 59.003 50.000 0.00 0.00 0.00 3.06
1861 1937 2.632996 TCTCCGACTCCAAACAATGACT 59.367 45.455 0.00 0.00 0.00 3.41
1862 1938 2.996621 CTCCGACTCCAAACAATGACTC 59.003 50.000 0.00 0.00 0.00 3.36
1863 1939 2.632996 TCCGACTCCAAACAATGACTCT 59.367 45.455 0.00 0.00 0.00 3.24
1866 1942 4.058124 CGACTCCAAACAATGACTCTGAA 58.942 43.478 0.00 0.00 0.00 3.02
1884 1960 8.546083 ACTCTGAATCTGATACTGATAGGTTT 57.454 34.615 0.00 0.00 0.00 3.27
2050 2126 6.704056 TTCTCCAGGGTAAGAAAGAAGAAT 57.296 37.500 0.00 0.00 0.00 2.40
2083 2159 4.518590 TGTTCCAGCAGATCGAAAAATTGA 59.481 37.500 0.00 0.00 0.00 2.57
2085 2161 5.300969 TCCAGCAGATCGAAAAATTGAAG 57.699 39.130 0.00 0.00 0.00 3.02
2127 2203 1.126948 TCCAGATGGACCAGCACACA 61.127 55.000 13.21 0.00 39.78 3.72
2159 2242 1.886222 CGAATTGCCCTCACCTCCAAA 60.886 52.381 0.00 0.00 0.00 3.28
2183 2266 1.205655 TCTTCAGAGCCTGAACATCCG 59.794 52.381 12.03 4.83 44.27 4.18
2185 2268 1.078918 CAGAGCCTGAACATCCGCA 60.079 57.895 0.00 0.00 32.44 5.69
2226 2309 0.966875 TGTGGATTGCAGGGCATGAC 60.967 55.000 1.99 0.00 38.76 3.06
2235 2318 0.962356 CAGGGCATGACCAACTCACC 60.962 60.000 22.78 0.00 42.05 4.02
2239 2322 0.883833 GCATGACCAACTCACCAAGG 59.116 55.000 0.00 0.00 0.00 3.61
2250 2333 2.224305 ACTCACCAAGGTAACACTGAGC 60.224 50.000 0.00 0.00 41.41 4.26
2278 2361 0.833949 CCTTGGGGAAGAGGCTCTAC 59.166 60.000 19.07 13.71 33.58 2.59
2298 2381 1.105759 GCATCCTTGGCCAGCTTAGG 61.106 60.000 14.24 14.24 0.00 2.69
2302 2385 0.179006 CCTTGGCCAGCTTAGGATCC 60.179 60.000 15.16 2.48 0.00 3.36
2352 2435 0.387929 ACGTCGAGAGCCAACTCAAA 59.612 50.000 0.00 0.00 46.09 2.69
2358 2441 4.024048 GTCGAGAGCCAACTCAAATTCAAA 60.024 41.667 0.00 0.00 46.09 2.69
2359 2442 4.578516 TCGAGAGCCAACTCAAATTCAAAA 59.421 37.500 0.00 0.00 46.09 2.44
2360 2443 5.067153 TCGAGAGCCAACTCAAATTCAAAAA 59.933 36.000 0.00 0.00 46.09 1.94
2403 2486 1.178276 CTCTAGTTGTCGAGGGCAGT 58.822 55.000 0.00 0.00 0.00 4.40
2404 2487 0.888619 TCTAGTTGTCGAGGGCAGTG 59.111 55.000 0.00 0.00 0.00 3.66
2428 2511 1.699083 TCACCAGCATCACCTTTGAGA 59.301 47.619 0.00 0.00 34.35 3.27
2429 2512 1.808945 CACCAGCATCACCTTTGAGAC 59.191 52.381 0.00 0.00 34.35 3.36
2446 2529 0.978146 GACTGGGGCAGCTCCTAAGA 60.978 60.000 14.13 0.00 34.37 2.10
2448 2531 0.108207 CTGGGGCAGCTCCTAAGATG 59.892 60.000 14.13 0.00 41.94 2.90
2463 2546 6.835174 TCCTAAGATGGAGATGATTTTCTGG 58.165 40.000 0.00 0.00 0.00 3.86
2466 2549 5.972327 AGATGGAGATGATTTTCTGGTCT 57.028 39.130 0.00 0.00 0.00 3.85
2505 2588 3.638860 TCCTTCTGGACTTAATCGCCTA 58.361 45.455 0.00 0.00 37.46 3.93
2523 2607 3.057946 GCCTACCAAGTTGAAGAAGCTTG 60.058 47.826 2.10 0.00 39.26 4.01
2524 2608 4.389374 CCTACCAAGTTGAAGAAGCTTGA 58.611 43.478 2.10 0.00 41.31 3.02
2539 2623 3.209410 AGCTTGAACTCAAAGGTGACAG 58.791 45.455 0.00 0.00 35.15 3.51
2555 2639 0.099613 ACAGCTGCGACATAGACTCG 59.900 55.000 15.27 0.00 0.00 4.18
2574 2658 4.478206 TCGCTGAGAGAAGGAATTGAAT 57.522 40.909 0.00 0.00 0.00 2.57
2576 2660 6.166984 TCGCTGAGAGAAGGAATTGAATAT 57.833 37.500 0.00 0.00 0.00 1.28
2580 2664 7.360185 CGCTGAGAGAAGGAATTGAATATCATG 60.360 40.741 0.00 0.00 0.00 3.07
2599 2683 1.355381 TGCCAACCATCCTGAACTGAT 59.645 47.619 0.00 0.00 0.00 2.90
2620 2704 1.879380 GTACAATGGACAGCTGCAACA 59.121 47.619 15.27 10.92 0.00 3.33
2625 2709 2.566833 TGGACAGCTGCAACACTATT 57.433 45.000 15.27 0.00 0.00 1.73
2665 2749 2.029844 GTGCTGCCTCAACTCCGTC 61.030 63.158 0.00 0.00 0.00 4.79
2666 2750 2.210013 TGCTGCCTCAACTCCGTCT 61.210 57.895 0.00 0.00 0.00 4.18
2667 2751 1.446966 GCTGCCTCAACTCCGTCTC 60.447 63.158 0.00 0.00 0.00 3.36
2668 2752 1.216710 CTGCCTCAACTCCGTCTCC 59.783 63.158 0.00 0.00 0.00 3.71
2669 2753 2.182030 GCCTCAACTCCGTCTCCG 59.818 66.667 0.00 0.00 0.00 4.63
2670 2754 2.637383 GCCTCAACTCCGTCTCCGT 61.637 63.158 0.00 0.00 0.00 4.69
2685 2769 2.101415 TCTCCGTGAGCAATCGATCAAT 59.899 45.455 0.00 0.00 39.75 2.57
2686 2770 2.868583 CTCCGTGAGCAATCGATCAATT 59.131 45.455 0.00 0.00 39.75 2.32
2690 2774 4.084849 CCGTGAGCAATCGATCAATTACTC 60.085 45.833 0.00 0.30 39.75 2.59
2701 2785 4.442403 CGATCAATTACTCTCCATCACACG 59.558 45.833 0.00 0.00 0.00 4.49
2705 2789 3.868757 TTACTCTCCATCACACGAAGG 57.131 47.619 0.00 0.00 0.00 3.46
2711 2795 1.691976 TCCATCACACGAAGGTCAAGT 59.308 47.619 0.00 0.00 31.64 3.16
2712 2796 2.104111 TCCATCACACGAAGGTCAAGTT 59.896 45.455 0.00 0.00 31.64 2.66
2721 2805 4.929211 CACGAAGGTCAAGTTGATACATCA 59.071 41.667 9.18 0.00 34.44 3.07
2758 2847 4.762956 AAGTTGCAGCTGAAGAAGATTC 57.237 40.909 20.43 0.00 0.00 2.52
2762 2851 1.401199 GCAGCTGAAGAAGATTCTGGC 59.599 52.381 20.43 2.28 37.65 4.85
2774 2863 1.561542 GATTCTGGCCCTCTTCTTCCA 59.438 52.381 0.00 0.00 0.00 3.53
2777 2866 1.845627 CTGGCCCTCTTCTTCCAGCA 61.846 60.000 0.00 0.00 39.53 4.41
2781 2870 1.449246 CCTCTTCTTCCAGCAGCCG 60.449 63.158 0.00 0.00 0.00 5.52
2782 2871 2.046892 TCTTCTTCCAGCAGCCGC 60.047 61.111 0.00 0.00 38.99 6.53
2804 2893 3.312828 GCATATGTTTGTTTGCCGTTCA 58.687 40.909 4.29 0.00 0.00 3.18
2806 2895 4.388469 GCATATGTTTGTTTGCCGTTCATT 59.612 37.500 4.29 0.00 0.00 2.57
2808 2897 6.565623 GCATATGTTTGTTTGCCGTTCATTTT 60.566 34.615 4.29 0.00 0.00 1.82
2814 2903 5.188327 TGTTTGCCGTTCATTTTCATGTA 57.812 34.783 0.00 0.00 0.00 2.29
2816 2905 6.219473 TGTTTGCCGTTCATTTTCATGTATT 58.781 32.000 0.00 0.00 0.00 1.89
2818 2907 6.702972 TTGCCGTTCATTTTCATGTATTTG 57.297 33.333 0.00 0.00 0.00 2.32
2834 2923 8.763356 TCATGTATTTGTGTTTGCTTTGATTTC 58.237 29.630 0.00 0.00 0.00 2.17
2853 2942 2.958818 TCCTATTATCGCTGGACCTGT 58.041 47.619 0.00 0.00 0.00 4.00
2869 2958 5.048364 TGGACCTGTATTTTGTTATGTGCAC 60.048 40.000 10.75 10.75 0.00 4.57
2871 2960 4.517453 ACCTGTATTTTGTTATGTGCACGT 59.483 37.500 17.19 17.19 0.00 4.49
2872 2961 4.851014 CCTGTATTTTGTTATGTGCACGTG 59.149 41.667 21.92 12.28 0.00 4.49
2876 2965 6.851837 TGTATTTTGTTATGTGCACGTGTTAC 59.148 34.615 21.92 16.55 0.00 2.50
2879 2968 2.144730 GTTATGTGCACGTGTTACCCA 58.855 47.619 21.92 2.76 0.00 4.51
2889 2978 2.101750 ACGTGTTACCCATATCGCATGA 59.898 45.455 0.00 0.00 0.00 3.07
2893 2982 5.451908 GTGTTACCCATATCGCATGATTTG 58.548 41.667 0.00 0.00 35.99 2.32
2921 3010 5.260424 TGGCTTGGTATATGATTTGTGTGT 58.740 37.500 0.00 0.00 0.00 3.72
2968 3057 3.473923 TGCTTGTCATGAGTGAGTGAA 57.526 42.857 0.00 0.00 34.36 3.18
2969 3058 3.133691 TGCTTGTCATGAGTGAGTGAAC 58.866 45.455 0.00 0.00 34.36 3.18
2970 3059 3.133691 GCTTGTCATGAGTGAGTGAACA 58.866 45.455 0.00 0.00 34.36 3.18
2971 3060 3.561310 GCTTGTCATGAGTGAGTGAACAA 59.439 43.478 0.00 0.00 34.36 2.83
2972 3061 4.214971 GCTTGTCATGAGTGAGTGAACAAT 59.785 41.667 0.00 0.00 34.36 2.71
2973 3062 5.278169 GCTTGTCATGAGTGAGTGAACAATT 60.278 40.000 0.00 0.00 34.36 2.32
2974 3063 6.073058 GCTTGTCATGAGTGAGTGAACAATTA 60.073 38.462 0.00 0.00 34.36 1.40
2975 3064 7.361542 GCTTGTCATGAGTGAGTGAACAATTAT 60.362 37.037 0.00 0.00 34.36 1.28
2976 3065 9.154847 CTTGTCATGAGTGAGTGAACAATTATA 57.845 33.333 0.00 0.00 34.36 0.98
2982 3071 9.783081 ATGAGTGAGTGAACAATTATATATGCA 57.217 29.630 0.00 0.00 0.00 3.96
2983 3072 9.783081 TGAGTGAGTGAACAATTATATATGCAT 57.217 29.630 3.79 3.79 0.00 3.96
3002 3097 4.947388 TGCATTTGTACTTCCTGGTTATCC 59.053 41.667 0.00 0.00 0.00 2.59
3022 3117 1.676916 CGGTGATGGAATCTGTGTGCT 60.677 52.381 0.00 0.00 45.81 4.40
3035 3130 2.935849 CTGTGTGCTGTGTACAAGTTGA 59.064 45.455 10.54 0.00 28.81 3.18
3046 3141 6.068010 TGTGTACAAGTTGATGGGAGAAAAT 58.932 36.000 10.54 0.00 0.00 1.82
3078 3174 4.199310 TGGTTATCTGAAGTATTGCAGGC 58.801 43.478 0.00 0.00 33.05 4.85
3082 3178 1.635487 TCTGAAGTATTGCAGGCCCTT 59.365 47.619 0.00 0.00 33.05 3.95
3085 3182 4.658435 TCTGAAGTATTGCAGGCCCTTATA 59.342 41.667 0.00 0.00 33.05 0.98
3088 3185 5.310594 TGAAGTATTGCAGGCCCTTATAGAT 59.689 40.000 0.00 0.00 0.00 1.98
3107 3217 2.380084 TATCTCACTGTTTCGTGGCC 57.620 50.000 0.00 0.00 35.63 5.36
3112 3222 0.307760 CACTGTTTCGTGGCCAGAAC 59.692 55.000 5.11 12.66 0.00 3.01
3183 3293 1.302033 CAGTGTGGCCTCAGTGGTC 60.302 63.158 27.82 9.10 41.87 4.02
3199 3309 2.579878 GTCAGATCGACCTCACCCA 58.420 57.895 6.47 0.00 38.85 4.51
3201 3311 1.482593 GTCAGATCGACCTCACCCATT 59.517 52.381 6.47 0.00 38.85 3.16
3272 3746 4.641396 AGAAACTACAGCAGCACATGTTA 58.359 39.130 0.00 0.00 0.00 2.41
3290 3764 9.015577 CACATGTTATTTGAAACAAGTTAACGT 57.984 29.630 0.00 0.00 42.33 3.99
3379 3857 0.541764 TTTCTGGGTGTCCAATGCCC 60.542 55.000 0.00 0.00 43.51 5.36
3380 3858 2.751436 CTGGGTGTCCAATGCCCG 60.751 66.667 0.00 0.00 45.19 6.13
3382 3860 4.740822 GGGTGTCCAATGCCCGCT 62.741 66.667 0.00 0.00 32.16 5.52
3383 3861 2.676471 GGTGTCCAATGCCCGCTT 60.676 61.111 0.00 0.00 0.00 4.68
3384 3862 2.568090 GTGTCCAATGCCCGCTTG 59.432 61.111 0.00 0.00 0.00 4.01
3386 3864 4.133796 GTCCAATGCCCGCTTGCC 62.134 66.667 0.00 0.00 0.00 4.52
3387 3865 4.675161 TCCAATGCCCGCTTGCCA 62.675 61.111 0.00 0.00 0.00 4.92
3388 3866 4.440127 CCAATGCCCGCTTGCCAC 62.440 66.667 0.00 0.00 0.00 5.01
3389 3867 4.781959 CAATGCCCGCTTGCCACG 62.782 66.667 0.00 0.00 0.00 4.94
3425 3903 3.403038 AGATGGACCGAGTTTGAGTTTG 58.597 45.455 0.00 0.00 0.00 2.93
3429 3907 1.798813 GACCGAGTTTGAGTTTGCGAT 59.201 47.619 0.00 0.00 0.00 4.58
3478 3956 2.124403 CAGGTCATGCAGGAGGGC 60.124 66.667 0.00 0.00 0.00 5.19
3481 3959 4.783621 GTCATGCAGGAGGGCGCA 62.784 66.667 10.83 0.00 43.45 6.09
3511 3989 2.890945 GGAGCAGAGAATAGGAGGACTC 59.109 54.545 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.948719 GCCCGGACCTGGTTGTCA 61.949 66.667 0.73 0.00 36.97 3.58
336 337 0.859760 CAGATCCTCCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
337 338 0.831711 GCAGATCCTCCTCCTCCTCC 60.832 65.000 0.00 0.00 0.00 4.30
358 359 1.466024 CCGTAGAGCAACTCACGTCTC 60.466 57.143 14.09 0.00 35.21 3.36
380 381 2.361438 CCTCTATAGTGTCCGGTGGTTC 59.639 54.545 0.00 0.00 0.00 3.62
381 382 2.024655 TCCTCTATAGTGTCCGGTGGTT 60.025 50.000 0.00 0.00 0.00 3.67
382 383 1.567649 TCCTCTATAGTGTCCGGTGGT 59.432 52.381 0.00 0.00 0.00 4.16
383 384 2.231529 CTCCTCTATAGTGTCCGGTGG 58.768 57.143 0.00 0.00 0.00 4.61
384 385 2.158652 TCCTCCTCTATAGTGTCCGGTG 60.159 54.545 0.00 0.00 0.00 4.94
385 386 2.133520 TCCTCCTCTATAGTGTCCGGT 58.866 52.381 0.00 0.00 0.00 5.28
386 387 2.953284 TCCTCCTCTATAGTGTCCGG 57.047 55.000 0.00 0.00 0.00 5.14
387 388 3.004944 GCTTTCCTCCTCTATAGTGTCCG 59.995 52.174 0.00 0.00 0.00 4.79
388 389 3.961408 TGCTTTCCTCCTCTATAGTGTCC 59.039 47.826 0.00 0.00 0.00 4.02
389 390 5.105310 TGTTGCTTTCCTCCTCTATAGTGTC 60.105 44.000 0.00 0.00 0.00 3.67
390 391 4.777896 TGTTGCTTTCCTCCTCTATAGTGT 59.222 41.667 0.00 0.00 0.00 3.55
391 392 5.344743 TGTTGCTTTCCTCCTCTATAGTG 57.655 43.478 0.00 0.00 0.00 2.74
392 393 5.104735 CCTTGTTGCTTTCCTCCTCTATAGT 60.105 44.000 0.00 0.00 0.00 2.12
393 394 5.104735 ACCTTGTTGCTTTCCTCCTCTATAG 60.105 44.000 0.00 0.00 0.00 1.31
394 395 4.783227 ACCTTGTTGCTTTCCTCCTCTATA 59.217 41.667 0.00 0.00 0.00 1.31
395 396 3.589288 ACCTTGTTGCTTTCCTCCTCTAT 59.411 43.478 0.00 0.00 0.00 1.98
396 397 2.979678 ACCTTGTTGCTTTCCTCCTCTA 59.020 45.455 0.00 0.00 0.00 2.43
397 398 1.777272 ACCTTGTTGCTTTCCTCCTCT 59.223 47.619 0.00 0.00 0.00 3.69
406 407 2.301346 CACTTCAGGACCTTGTTGCTT 58.699 47.619 0.00 0.00 0.00 3.91
408 409 1.604278 GACACTTCAGGACCTTGTTGC 59.396 52.381 0.00 0.00 0.00 4.17
419 420 5.991328 TCTTTGTAAAGCAGACACTTCAG 57.009 39.130 0.00 0.00 35.99 3.02
421 422 8.054510 CAAATTCTTTGTAAAGCAGACACTTC 57.945 34.615 0.00 0.00 35.99 3.01
422 423 7.992180 CAAATTCTTTGTAAAGCAGACACTT 57.008 32.000 0.00 0.00 35.99 3.16
436 437 6.809689 TGCTAGCATCATGAACAAATTCTTTG 59.190 34.615 14.93 0.00 45.95 2.77
437 438 6.927416 TGCTAGCATCATGAACAAATTCTTT 58.073 32.000 14.93 0.00 35.69 2.52
439 440 6.710597 ATGCTAGCATCATGAACAAATTCT 57.289 33.333 24.67 0.00 31.59 2.40
440 441 6.976349 TCAATGCTAGCATCATGAACAAATTC 59.024 34.615 29.67 0.00 35.31 2.17
442 443 6.459670 TCAATGCTAGCATCATGAACAAAT 57.540 33.333 29.67 8.01 35.31 2.32
443 444 5.900865 TCAATGCTAGCATCATGAACAAA 57.099 34.783 29.67 7.10 35.31 2.83
444 445 5.900865 TTCAATGCTAGCATCATGAACAA 57.099 34.783 28.80 15.60 35.31 2.83
445 446 5.416639 ACTTTCAATGCTAGCATCATGAACA 59.583 36.000 30.91 23.15 34.72 3.18
446 447 5.888105 ACTTTCAATGCTAGCATCATGAAC 58.112 37.500 30.91 0.00 34.72 3.18
447 448 5.648960 TGACTTTCAATGCTAGCATCATGAA 59.351 36.000 28.80 28.80 35.31 2.57
448 449 5.187687 TGACTTTCAATGCTAGCATCATGA 58.812 37.500 29.67 25.64 35.31 3.07
449 450 5.494632 TGACTTTCAATGCTAGCATCATG 57.505 39.130 29.67 23.89 35.31 3.07
450 451 6.519679 TTTGACTTTCAATGCTAGCATCAT 57.480 33.333 29.67 13.39 36.11 2.45
451 452 5.946298 CTTTGACTTTCAATGCTAGCATCA 58.054 37.500 29.67 19.29 36.11 3.07
460 461 8.894409 TGTTATAATCGCTTTGACTTTCAATG 57.106 30.769 0.00 0.00 36.11 2.82
461 462 9.559958 CTTGTTATAATCGCTTTGACTTTCAAT 57.440 29.630 0.00 0.00 36.11 2.57
462 463 8.779303 TCTTGTTATAATCGCTTTGACTTTCAA 58.221 29.630 0.00 0.00 34.03 2.69
463 464 8.317891 TCTTGTTATAATCGCTTTGACTTTCA 57.682 30.769 0.00 0.00 0.00 2.69
464 465 7.905493 CCTCTTGTTATAATCGCTTTGACTTTC 59.095 37.037 0.00 0.00 0.00 2.62
465 466 7.606456 TCCTCTTGTTATAATCGCTTTGACTTT 59.394 33.333 0.00 0.00 0.00 2.66
466 467 7.103641 TCCTCTTGTTATAATCGCTTTGACTT 58.896 34.615 0.00 0.00 0.00 3.01
467 468 6.640518 TCCTCTTGTTATAATCGCTTTGACT 58.359 36.000 0.00 0.00 0.00 3.41
468 469 6.903883 TCCTCTTGTTATAATCGCTTTGAC 57.096 37.500 0.00 0.00 0.00 3.18
469 470 7.103641 ACTTCCTCTTGTTATAATCGCTTTGA 58.896 34.615 0.00 0.00 0.00 2.69
470 471 7.308782 ACTTCCTCTTGTTATAATCGCTTTG 57.691 36.000 0.00 0.00 0.00 2.77
471 472 8.038944 TGTACTTCCTCTTGTTATAATCGCTTT 58.961 33.333 0.00 0.00 0.00 3.51
472 473 7.553334 TGTACTTCCTCTTGTTATAATCGCTT 58.447 34.615 0.00 0.00 0.00 4.68
473 474 7.108841 TGTACTTCCTCTTGTTATAATCGCT 57.891 36.000 0.00 0.00 0.00 4.93
474 475 6.421202 CCTGTACTTCCTCTTGTTATAATCGC 59.579 42.308 0.00 0.00 0.00 4.58
475 476 7.490000 ACCTGTACTTCCTCTTGTTATAATCG 58.510 38.462 0.00 0.00 0.00 3.34
476 477 9.099454 CAACCTGTACTTCCTCTTGTTATAATC 57.901 37.037 0.00 0.00 0.00 1.75
477 478 8.822805 TCAACCTGTACTTCCTCTTGTTATAAT 58.177 33.333 0.00 0.00 0.00 1.28
478 479 8.197592 TCAACCTGTACTTCCTCTTGTTATAA 57.802 34.615 0.00 0.00 0.00 0.98
479 480 7.786046 TCAACCTGTACTTCCTCTTGTTATA 57.214 36.000 0.00 0.00 0.00 0.98
480 481 6.681729 TCAACCTGTACTTCCTCTTGTTAT 57.318 37.500 0.00 0.00 0.00 1.89
481 482 6.497259 AGATCAACCTGTACTTCCTCTTGTTA 59.503 38.462 0.00 0.00 0.00 2.41
482 483 5.308237 AGATCAACCTGTACTTCCTCTTGTT 59.692 40.000 0.00 0.00 0.00 2.83
483 484 4.841246 AGATCAACCTGTACTTCCTCTTGT 59.159 41.667 0.00 0.00 0.00 3.16
484 485 5.174395 CAGATCAACCTGTACTTCCTCTTG 58.826 45.833 0.00 0.00 0.00 3.02
485 486 4.841246 ACAGATCAACCTGTACTTCCTCTT 59.159 41.667 0.00 0.00 44.82 2.85
486 487 4.421131 ACAGATCAACCTGTACTTCCTCT 58.579 43.478 0.00 0.00 44.82 3.69
487 488 4.810191 ACAGATCAACCTGTACTTCCTC 57.190 45.455 0.00 0.00 44.82 3.71
496 497 5.982356 TCTCCTTCAATACAGATCAACCTG 58.018 41.667 0.00 0.00 39.93 4.00
497 498 6.352565 CCTTCTCCTTCAATACAGATCAACCT 60.353 42.308 0.00 0.00 0.00 3.50
498 499 5.819901 CCTTCTCCTTCAATACAGATCAACC 59.180 44.000 0.00 0.00 0.00 3.77
499 500 6.410540 ACCTTCTCCTTCAATACAGATCAAC 58.589 40.000 0.00 0.00 0.00 3.18
520 521 0.834687 TTGTCTTCCCCACGCTACCT 60.835 55.000 0.00 0.00 0.00 3.08
539 540 4.132336 TCGTATACCTTCTGTGCGATAGT 58.868 43.478 0.00 0.00 39.35 2.12
540 541 4.713806 CTCGTATACCTTCTGTGCGATAG 58.286 47.826 0.00 0.00 0.00 2.08
549 550 3.130693 GGAAGTGTGCTCGTATACCTTCT 59.869 47.826 12.52 0.00 31.08 2.85
602 603 5.121768 GCCTGTACGACTTTACAATGTTGAT 59.878 40.000 0.00 0.00 31.52 2.57
609 610 7.064134 CAGAATATTGCCTGTACGACTTTACAA 59.936 37.037 0.00 0.00 31.52 2.41
612 613 6.869695 TCAGAATATTGCCTGTACGACTTTA 58.130 36.000 0.00 0.00 0.00 1.85
614 615 5.339008 TCAGAATATTGCCTGTACGACTT 57.661 39.130 0.00 0.00 0.00 3.01
615 616 4.737946 GCTCAGAATATTGCCTGTACGACT 60.738 45.833 0.00 0.00 0.00 4.18
617 618 3.384789 AGCTCAGAATATTGCCTGTACGA 59.615 43.478 0.00 0.00 0.00 3.43
618 619 3.722147 AGCTCAGAATATTGCCTGTACG 58.278 45.455 0.00 0.00 0.00 3.67
620 621 4.371786 CGAAGCTCAGAATATTGCCTGTA 58.628 43.478 0.00 0.00 0.00 2.74
638 639 3.130516 TGTTGTAGTATCTCCCTGCGAAG 59.869 47.826 0.00 0.00 0.00 3.79
640 641 2.730382 TGTTGTAGTATCTCCCTGCGA 58.270 47.619 0.00 0.00 0.00 5.10
643 644 6.331061 GTGTAGTTGTTGTAGTATCTCCCTG 58.669 44.000 0.00 0.00 0.00 4.45
645 646 5.394993 GGGTGTAGTTGTTGTAGTATCTCCC 60.395 48.000 0.00 0.00 0.00 4.30
656 657 2.948979 TGCTTTGAGGGTGTAGTTGTTG 59.051 45.455 0.00 0.00 0.00 3.33
667 668 0.329261 TGACCATCCTGCTTTGAGGG 59.671 55.000 0.00 0.00 39.53 4.30
669 670 2.486472 ACTGACCATCCTGCTTTGAG 57.514 50.000 0.00 0.00 0.00 3.02
670 671 2.886523 CAAACTGACCATCCTGCTTTGA 59.113 45.455 0.00 0.00 0.00 2.69
671 672 2.624838 ACAAACTGACCATCCTGCTTTG 59.375 45.455 0.00 0.00 0.00 2.77
672 673 2.624838 CACAAACTGACCATCCTGCTTT 59.375 45.455 0.00 0.00 0.00 3.51
673 674 2.233271 CACAAACTGACCATCCTGCTT 58.767 47.619 0.00 0.00 0.00 3.91
674 675 1.546323 CCACAAACTGACCATCCTGCT 60.546 52.381 0.00 0.00 0.00 4.24
675 676 0.883833 CCACAAACTGACCATCCTGC 59.116 55.000 0.00 0.00 0.00 4.85
678 679 2.162681 CCTTCCACAAACTGACCATCC 58.837 52.381 0.00 0.00 0.00 3.51
683 684 3.476552 TGTCATCCTTCCACAAACTGAC 58.523 45.455 0.00 0.00 33.79 3.51
684 685 3.855255 TGTCATCCTTCCACAAACTGA 57.145 42.857 0.00 0.00 0.00 3.41
685 686 3.254166 CCTTGTCATCCTTCCACAAACTG 59.746 47.826 0.00 0.00 29.78 3.16
688 689 3.874383 TCCTTGTCATCCTTCCACAAA 57.126 42.857 0.00 0.00 29.78 2.83
695 696 6.923199 ATTTTGTGATTCCTTGTCATCCTT 57.077 33.333 0.00 0.00 0.00 3.36
697 698 6.268566 GCTATTTTGTGATTCCTTGTCATCC 58.731 40.000 0.00 0.00 0.00 3.51
698 699 5.967674 CGCTATTTTGTGATTCCTTGTCATC 59.032 40.000 0.00 0.00 0.00 2.92
699 700 5.647658 TCGCTATTTTGTGATTCCTTGTCAT 59.352 36.000 0.00 0.00 0.00 3.06
702 703 4.142600 GCTCGCTATTTTGTGATTCCTTGT 60.143 41.667 0.00 0.00 0.00 3.16
707 708 5.163814 ACAGAAGCTCGCTATTTTGTGATTC 60.164 40.000 0.00 0.00 0.00 2.52
709 710 4.256920 ACAGAAGCTCGCTATTTTGTGAT 58.743 39.130 0.00 0.00 0.00 3.06
713 714 4.161333 CCAAACAGAAGCTCGCTATTTTG 58.839 43.478 11.84 11.84 0.00 2.44
714 715 3.821033 ACCAAACAGAAGCTCGCTATTTT 59.179 39.130 0.00 0.00 0.00 1.82
717 718 2.770164 ACCAAACAGAAGCTCGCTAT 57.230 45.000 0.00 0.00 0.00 2.97
719 720 2.543777 TTACCAAACAGAAGCTCGCT 57.456 45.000 0.00 0.00 0.00 4.93
720 721 3.555518 CTTTTACCAAACAGAAGCTCGC 58.444 45.455 0.00 0.00 0.00 5.03
721 722 3.003275 TGCTTTTACCAAACAGAAGCTCG 59.997 43.478 7.74 0.00 42.30 5.03
725 726 7.875971 ACTAGAATGCTTTTACCAAACAGAAG 58.124 34.615 0.00 0.00 0.00 2.85
726 727 7.500892 TGACTAGAATGCTTTTACCAAACAGAA 59.499 33.333 0.00 0.00 0.00 3.02
728 729 7.202016 TGACTAGAATGCTTTTACCAAACAG 57.798 36.000 0.00 0.00 0.00 3.16
732 733 7.121168 CCAGAATGACTAGAATGCTTTTACCAA 59.879 37.037 0.00 0.00 39.69 3.67
733 734 6.599244 CCAGAATGACTAGAATGCTTTTACCA 59.401 38.462 0.00 0.00 39.69 3.25
735 736 7.849804 TCCAGAATGACTAGAATGCTTTTAC 57.150 36.000 0.00 0.00 39.69 2.01
737 738 6.183360 GCATCCAGAATGACTAGAATGCTTTT 60.183 38.462 0.00 0.00 39.69 2.27
738 739 5.298777 GCATCCAGAATGACTAGAATGCTTT 59.701 40.000 0.00 0.00 39.69 3.51
741 742 3.501445 GGCATCCAGAATGACTAGAATGC 59.499 47.826 0.00 0.00 40.60 3.56
743 744 3.389329 ACGGCATCCAGAATGACTAGAAT 59.611 43.478 0.00 0.00 41.74 2.40
749 750 1.154205 CCGACGGCATCCAGAATGAC 61.154 60.000 0.00 0.00 39.69 3.06
752 753 1.153369 CACCGACGGCATCCAGAAT 60.153 57.895 15.39 0.00 0.00 2.40
767 768 0.247460 GAAAATTCTGCCTGGCCACC 59.753 55.000 17.53 0.00 0.00 4.61
768 769 0.247460 GGAAAATTCTGCCTGGCCAC 59.753 55.000 17.53 0.00 0.00 5.01
775 776 6.368791 GGTTTATTTCACAGGAAAATTCTGCC 59.631 38.462 0.00 0.00 45.52 4.85
776 777 6.089417 CGGTTTATTTCACAGGAAAATTCTGC 59.911 38.462 0.00 0.00 45.52 4.26
779 780 7.114388 GTCACGGTTTATTTCACAGGAAAATTC 59.886 37.037 0.00 0.00 45.52 2.17
781 782 6.264518 AGTCACGGTTTATTTCACAGGAAAAT 59.735 34.615 0.00 0.00 45.52 1.82
782 783 5.591067 AGTCACGGTTTATTTCACAGGAAAA 59.409 36.000 0.00 0.00 45.52 2.29
788 858 5.049267 GCCTAAAGTCACGGTTTATTTCACA 60.049 40.000 0.00 0.00 0.00 3.58
789 859 5.049267 TGCCTAAAGTCACGGTTTATTTCAC 60.049 40.000 0.00 0.00 0.00 3.18
792 862 6.584185 AATGCCTAAAGTCACGGTTTATTT 57.416 33.333 0.00 0.00 0.00 1.40
794 864 7.051623 TCATAATGCCTAAAGTCACGGTTTAT 58.948 34.615 0.00 0.00 0.00 1.40
797 867 4.839121 TCATAATGCCTAAAGTCACGGTT 58.161 39.130 0.00 0.00 0.00 4.44
800 870 5.755375 AGACATCATAATGCCTAAAGTCACG 59.245 40.000 0.00 0.00 36.26 4.35
809 879 1.202734 AGCGCAGACATCATAATGCCT 60.203 47.619 11.47 0.00 36.26 4.75
811 881 4.675190 ATTAGCGCAGACATCATAATGC 57.325 40.909 11.47 0.00 36.26 3.56
813 883 5.349817 GCACTATTAGCGCAGACATCATAAT 59.650 40.000 11.47 4.81 0.00 1.28
814 884 4.686091 GCACTATTAGCGCAGACATCATAA 59.314 41.667 11.47 0.00 0.00 1.90
815 885 4.021981 AGCACTATTAGCGCAGACATCATA 60.022 41.667 11.47 0.00 37.01 2.15
816 886 3.062763 GCACTATTAGCGCAGACATCAT 58.937 45.455 11.47 0.00 0.00 2.45
817 887 2.101415 AGCACTATTAGCGCAGACATCA 59.899 45.455 11.47 0.00 37.01 3.07
823 893 6.808704 TCATTATTAGAGCACTATTAGCGCAG 59.191 38.462 11.47 0.00 37.01 5.18
825 895 6.035112 GGTCATTATTAGAGCACTATTAGCGC 59.965 42.308 0.00 0.00 37.01 5.92
826 896 6.251589 CGGTCATTATTAGAGCACTATTAGCG 59.748 42.308 0.00 0.00 37.01 4.26
828 898 7.827701 TCCGGTCATTATTAGAGCACTATTAG 58.172 38.462 0.00 0.00 33.29 1.73
829 899 7.770366 TCCGGTCATTATTAGAGCACTATTA 57.230 36.000 0.00 0.00 33.29 0.98
830 900 6.665992 TCCGGTCATTATTAGAGCACTATT 57.334 37.500 0.00 0.00 33.29 1.73
831 901 6.665992 TTCCGGTCATTATTAGAGCACTAT 57.334 37.500 0.00 0.00 33.29 2.12
832 902 6.474140 TTTCCGGTCATTATTAGAGCACTA 57.526 37.500 0.00 0.00 33.29 2.74
833 903 5.353394 TTTCCGGTCATTATTAGAGCACT 57.647 39.130 0.00 0.00 33.29 4.40
834 904 6.619801 AATTTCCGGTCATTATTAGAGCAC 57.380 37.500 0.00 0.00 33.29 4.40
835 905 7.506114 AGTAATTTCCGGTCATTATTAGAGCA 58.494 34.615 0.00 0.00 33.29 4.26
836 906 7.964604 AGTAATTTCCGGTCATTATTAGAGC 57.035 36.000 0.00 0.00 0.00 4.09
838 908 9.116067 CCAAAGTAATTTCCGGTCATTATTAGA 57.884 33.333 0.00 0.00 0.00 2.10
839 909 8.899771 ACCAAAGTAATTTCCGGTCATTATTAG 58.100 33.333 0.00 0.15 0.00 1.73
857 927 3.392947 TCACCAATCCAGTCACCAAAGTA 59.607 43.478 0.00 0.00 0.00 2.24
863 933 2.787473 TCATCACCAATCCAGTCACC 57.213 50.000 0.00 0.00 0.00 4.02
864 934 2.357009 GCATCATCACCAATCCAGTCAC 59.643 50.000 0.00 0.00 0.00 3.67
866 936 2.617308 CTGCATCATCACCAATCCAGTC 59.383 50.000 0.00 0.00 0.00 3.51
868 938 1.954382 CCTGCATCATCACCAATCCAG 59.046 52.381 0.00 0.00 0.00 3.86
869 939 1.565288 TCCTGCATCATCACCAATCCA 59.435 47.619 0.00 0.00 0.00 3.41
870 940 2.353357 TCCTGCATCATCACCAATCC 57.647 50.000 0.00 0.00 0.00 3.01
871 941 4.340097 TGAAATCCTGCATCATCACCAATC 59.660 41.667 0.00 0.00 0.00 2.67
872 942 4.283337 TGAAATCCTGCATCATCACCAAT 58.717 39.130 0.00 0.00 0.00 3.16
873 943 3.699413 TGAAATCCTGCATCATCACCAA 58.301 40.909 0.00 0.00 0.00 3.67
874 944 3.369242 TGAAATCCTGCATCATCACCA 57.631 42.857 0.00 0.00 0.00 4.17
875 945 4.217118 GGTATGAAATCCTGCATCATCACC 59.783 45.833 3.07 6.58 35.53 4.02
876 946 4.823442 TGGTATGAAATCCTGCATCATCAC 59.177 41.667 3.07 0.00 35.53 3.06
877 947 5.051409 TGGTATGAAATCCTGCATCATCA 57.949 39.130 3.07 0.00 35.53 3.07
878 948 6.395426 TTTGGTATGAAATCCTGCATCATC 57.605 37.500 3.07 0.00 35.53 2.92
879 949 6.795144 TTTTGGTATGAAATCCTGCATCAT 57.205 33.333 5.18 5.18 37.54 2.45
880 950 6.602410 TTTTTGGTATGAAATCCTGCATCA 57.398 33.333 0.00 0.00 0.00 3.07
904 974 1.600485 GGACGTGTTTCACAACGGAAT 59.400 47.619 0.00 0.00 35.40 3.01
934 1004 2.551270 AGGTCCAATGCTCTTGTCCTA 58.449 47.619 0.00 0.00 0.00 2.94
937 1007 1.200948 GCAAGGTCCAATGCTCTTGTC 59.799 52.381 11.37 0.00 39.46 3.18
939 1009 1.250328 TGCAAGGTCCAATGCTCTTG 58.750 50.000 17.53 0.00 42.97 3.02
940 1010 1.999648 TTGCAAGGTCCAATGCTCTT 58.000 45.000 17.53 0.00 42.97 2.85
951 1021 4.535526 AAAACTTCACACTTTGCAAGGT 57.464 36.364 8.63 8.63 0.00 3.50
972 1042 4.258543 CGGCCAATACTCTTGTCCTAAAA 58.741 43.478 2.24 0.00 0.00 1.52
974 1044 2.835764 ACGGCCAATACTCTTGTCCTAA 59.164 45.455 2.24 0.00 0.00 2.69
975 1045 2.463752 ACGGCCAATACTCTTGTCCTA 58.536 47.619 2.24 0.00 0.00 2.94
976 1046 1.276622 ACGGCCAATACTCTTGTCCT 58.723 50.000 2.24 0.00 0.00 3.85
977 1047 2.109425 AACGGCCAATACTCTTGTCC 57.891 50.000 2.24 0.00 0.00 4.02
978 1048 5.616488 TTAAAACGGCCAATACTCTTGTC 57.384 39.130 2.24 0.00 0.00 3.18
979 1049 5.708230 TCATTAAAACGGCCAATACTCTTGT 59.292 36.000 2.24 0.00 0.00 3.16
980 1050 6.189677 TCATTAAAACGGCCAATACTCTTG 57.810 37.500 2.24 0.00 0.00 3.02
981 1051 6.433093 ACTTCATTAAAACGGCCAATACTCTT 59.567 34.615 2.24 0.00 0.00 2.85
982 1052 5.944007 ACTTCATTAAAACGGCCAATACTCT 59.056 36.000 2.24 0.00 0.00 3.24
983 1053 6.027749 CACTTCATTAAAACGGCCAATACTC 58.972 40.000 2.24 0.00 0.00 2.59
984 1054 5.621329 GCACTTCATTAAAACGGCCAATACT 60.621 40.000 2.24 0.00 0.00 2.12
993 1063 4.150980 TCGTGGTAGCACTTCATTAAAACG 59.849 41.667 21.80 5.28 0.00 3.60
1001 1071 2.453521 AGGTATCGTGGTAGCACTTCA 58.546 47.619 21.80 7.04 0.00 3.02
1002 1072 3.521947 AAGGTATCGTGGTAGCACTTC 57.478 47.619 21.80 9.56 0.00 3.01
1016 1086 1.171308 CAGCTGCAGTGCAAAGGTAT 58.829 50.000 20.22 0.00 38.41 2.73
1017 1087 0.179020 ACAGCTGCAGTGCAAAGGTA 60.179 50.000 20.22 0.00 38.41 3.08
1021 1091 0.752743 AGGAACAGCTGCAGTGCAAA 60.753 50.000 20.22 0.00 38.41 3.68
1027 1097 2.110901 AGATGAAGGAACAGCTGCAG 57.889 50.000 15.27 10.11 35.16 4.41
1028 1098 2.568956 AGTAGATGAAGGAACAGCTGCA 59.431 45.455 15.27 2.30 40.28 4.41
1133 1203 1.554617 TGTAGCAGACCATAAGCAGCA 59.445 47.619 0.00 0.00 0.00 4.41
1135 1205 2.604914 CGTTGTAGCAGACCATAAGCAG 59.395 50.000 0.00 0.00 0.00 4.24
1413 1483 4.938080 AGCCTACATCTGTAACGATGAAG 58.062 43.478 7.69 0.00 42.63 3.02
1510 1580 6.275335 GATCAGAATCAGACTCAGAAAGAGG 58.725 44.000 0.00 0.00 39.01 3.69
1530 1600 2.838360 CCATGGCCGGATGGATCA 59.162 61.111 15.64 0.00 45.24 2.92
1573 1643 4.232188 ACTGCCATTGATCAGATTCAGT 57.768 40.909 13.49 13.49 34.57 3.41
1583 1653 3.508793 CACCTTCAGAAACTGCCATTGAT 59.491 43.478 0.00 0.00 0.00 2.57
1662 1738 5.152623 TCAAGTACTTGAGCAGCAGTATT 57.847 39.130 30.07 0.00 43.90 1.89
1853 1929 7.415592 TCAGTATCAGATTCAGAGTCATTGT 57.584 36.000 0.00 0.00 0.00 2.71
1857 1933 7.293828 ACCTATCAGTATCAGATTCAGAGTCA 58.706 38.462 0.00 0.00 0.00 3.41
1858 1934 7.759489 ACCTATCAGTATCAGATTCAGAGTC 57.241 40.000 0.00 0.00 0.00 3.36
1859 1935 8.420222 CAAACCTATCAGTATCAGATTCAGAGT 58.580 37.037 0.00 0.00 0.00 3.24
1860 1936 8.637099 TCAAACCTATCAGTATCAGATTCAGAG 58.363 37.037 0.00 0.00 0.00 3.35
1861 1937 8.539117 TCAAACCTATCAGTATCAGATTCAGA 57.461 34.615 0.00 0.00 0.00 3.27
1862 1938 9.258826 CTTCAAACCTATCAGTATCAGATTCAG 57.741 37.037 0.00 0.00 0.00 3.02
1863 1939 8.981659 TCTTCAAACCTATCAGTATCAGATTCA 58.018 33.333 0.00 0.00 0.00 2.57
1866 1942 8.546083 ACTCTTCAAACCTATCAGTATCAGAT 57.454 34.615 0.00 0.00 0.00 2.90
1884 1960 2.307309 CGCCGCAAACGACTCTTCA 61.307 57.895 0.00 0.00 43.93 3.02
2071 2147 3.578282 AGGCAACCCTTCAATTTTTCGAT 59.422 39.130 0.00 0.00 38.74 3.59
2073 2149 3.317150 GAGGCAACCCTTCAATTTTTCG 58.683 45.455 0.00 0.00 43.12 3.46
2083 2159 4.035102 GGAGCGGAGGCAACCCTT 62.035 66.667 0.00 0.00 43.12 3.95
2124 2200 0.240945 ATTCGCCCTCGCTTTTTGTG 59.759 50.000 0.00 0.00 35.26 3.33
2127 2203 0.388520 GCAATTCGCCCTCGCTTTTT 60.389 50.000 0.00 0.00 35.26 1.94
2166 2249 1.219124 GCGGATGTTCAGGCTCTGA 59.781 57.895 1.25 1.25 38.87 3.27
2183 2266 3.446570 GCCCACCTGTGATGCTGC 61.447 66.667 0.00 0.00 0.00 5.25
2185 2268 0.698238 TAAAGCCCACCTGTGATGCT 59.302 50.000 8.01 8.01 39.16 3.79
2226 2309 2.878406 CAGTGTTACCTTGGTGAGTTGG 59.122 50.000 2.03 0.00 0.00 3.77
2235 2318 2.329379 GTCTCGCTCAGTGTTACCTTG 58.671 52.381 0.00 0.00 0.00 3.61
2239 2322 0.456312 CCGGTCTCGCTCAGTGTTAC 60.456 60.000 0.00 0.00 34.56 2.50
2274 2357 1.522092 CTGGCCAAGGATGCGTAGA 59.478 57.895 7.01 0.00 0.00 2.59
2278 2361 1.442526 CTAAGCTGGCCAAGGATGCG 61.443 60.000 7.01 0.00 0.00 4.73
2298 2381 2.588314 CTGAGGCAGCGCAGGATC 60.588 66.667 11.47 2.62 0.00 3.36
2335 2418 3.067106 TGAATTTGAGTTGGCTCTCGAC 58.933 45.455 5.99 0.00 42.13 4.20
2358 2441 6.548993 ACTTGAGGCTCTTGAATTCTTCTTTT 59.451 34.615 16.72 0.00 0.00 2.27
2359 2442 6.067350 ACTTGAGGCTCTTGAATTCTTCTTT 58.933 36.000 16.72 0.00 0.00 2.52
2360 2443 5.629125 ACTTGAGGCTCTTGAATTCTTCTT 58.371 37.500 16.72 0.00 0.00 2.52
2363 2446 5.012975 AGAGACTTGAGGCTCTTGAATTCTT 59.987 40.000 16.72 0.74 38.26 2.52
2367 2450 5.022787 ACTAGAGACTTGAGGCTCTTGAAT 58.977 41.667 25.32 7.29 41.46 2.57
2370 2453 4.021544 ACAACTAGAGACTTGAGGCTCTTG 60.022 45.833 20.75 20.00 41.46 3.02
2403 2486 0.986527 AGGTGATGCTGGTGATGTCA 59.013 50.000 0.00 0.00 0.00 3.58
2404 2487 2.119801 AAGGTGATGCTGGTGATGTC 57.880 50.000 0.00 0.00 0.00 3.06
2428 2511 0.327000 ATCTTAGGAGCTGCCCCAGT 60.327 55.000 2.14 0.00 37.37 4.00
2429 2512 0.108207 CATCTTAGGAGCTGCCCCAG 59.892 60.000 2.14 0.00 37.37 4.45
2446 2529 6.723052 ACAAAAGACCAGAAAATCATCTCCAT 59.277 34.615 0.00 0.00 0.00 3.41
2448 2531 6.432472 AGACAAAAGACCAGAAAATCATCTCC 59.568 38.462 0.00 0.00 0.00 3.71
2452 2535 6.070656 TGGAGACAAAAGACCAGAAAATCAT 58.929 36.000 0.00 0.00 37.44 2.45
2463 2546 5.478332 AGGAATTTCCATGGAGACAAAAGAC 59.522 40.000 15.53 4.51 39.61 3.01
2466 2549 6.015180 CAGAAGGAATTTCCATGGAGACAAAA 60.015 38.462 15.53 6.39 39.61 2.44
2505 2588 4.273318 AGTTCAAGCTTCTTCAACTTGGT 58.727 39.130 0.00 0.00 40.90 3.67
2523 2607 1.265365 GCAGCTGTCACCTTTGAGTTC 59.735 52.381 16.64 0.00 30.10 3.01
2524 2608 1.312815 GCAGCTGTCACCTTTGAGTT 58.687 50.000 16.64 0.00 30.10 3.01
2555 2639 7.573469 GCATGATATTCAATTCCTTCTCTCAGC 60.573 40.741 0.00 0.00 0.00 4.26
2556 2640 7.094720 GGCATGATATTCAATTCCTTCTCTCAG 60.095 40.741 0.00 0.00 0.00 3.35
2558 2642 6.713903 TGGCATGATATTCAATTCCTTCTCTC 59.286 38.462 0.00 0.00 0.00 3.20
2560 2644 6.889301 TGGCATGATATTCAATTCCTTCTC 57.111 37.500 0.00 0.00 0.00 2.87
2566 2650 6.014840 AGGATGGTTGGCATGATATTCAATTC 60.015 38.462 0.00 0.00 0.00 2.17
2571 2655 4.401022 TCAGGATGGTTGGCATGATATTC 58.599 43.478 0.00 0.00 36.16 1.75
2574 2658 3.202818 AGTTCAGGATGGTTGGCATGATA 59.797 43.478 0.00 0.00 36.16 2.15
2576 2660 1.355381 AGTTCAGGATGGTTGGCATGA 59.645 47.619 0.00 0.00 36.16 3.07
2580 2664 1.747355 CATCAGTTCAGGATGGTTGGC 59.253 52.381 0.00 0.00 38.74 4.52
2599 2683 1.879380 GTTGCAGCTGTCCATTGTACA 59.121 47.619 16.64 0.00 0.00 2.90
2665 2749 1.926561 TTGATCGATTGCTCACGGAG 58.073 50.000 0.00 0.00 0.00 4.63
2666 2750 2.602257 ATTGATCGATTGCTCACGGA 57.398 45.000 0.00 0.00 0.00 4.69
2667 2751 3.804325 AGTAATTGATCGATTGCTCACGG 59.196 43.478 17.86 0.00 27.52 4.94
2668 2752 4.742167 AGAGTAATTGATCGATTGCTCACG 59.258 41.667 35.84 0.00 45.49 4.35
2669 2753 5.176590 GGAGAGTAATTGATCGATTGCTCAC 59.823 44.000 35.84 31.84 45.49 3.51
2670 2754 5.163416 TGGAGAGTAATTGATCGATTGCTCA 60.163 40.000 35.84 23.29 45.49 4.26
2685 2769 3.162666 ACCTTCGTGTGATGGAGAGTAA 58.837 45.455 4.42 0.00 40.94 2.24
2686 2770 2.753452 GACCTTCGTGTGATGGAGAGTA 59.247 50.000 4.42 0.00 40.94 2.59
2690 2774 2.289072 ACTTGACCTTCGTGTGATGGAG 60.289 50.000 4.42 0.00 40.94 3.86
2721 2805 8.534496 AGCTGCAACTTTATTCAAGGATAAATT 58.466 29.630 1.02 0.00 36.72 1.82
2730 2819 6.262944 TCTTCTTCAGCTGCAACTTTATTCAA 59.737 34.615 9.47 0.00 0.00 2.69
2740 2829 3.079578 CCAGAATCTTCTTCAGCTGCAA 58.920 45.455 9.47 3.62 34.74 4.08
2758 2847 3.727032 CTGCTGGAAGAAGAGGGCCAG 62.727 61.905 6.18 0.00 45.09 4.85
2762 2851 1.077858 GGCTGCTGGAAGAAGAGGG 60.078 63.158 0.00 0.00 45.09 4.30
2774 2863 2.114670 AAACATATGCGCGGCTGCT 61.115 52.632 17.03 0.00 39.65 4.24
2777 2866 0.525761 AAACAAACATATGCGCGGCT 59.474 45.000 8.83 0.00 0.00 5.52
2781 2870 0.639756 CGGCAAACAAACATATGCGC 59.360 50.000 0.00 0.00 39.66 6.09
2782 2871 1.975837 ACGGCAAACAAACATATGCG 58.024 45.000 1.58 0.00 39.66 4.73
2784 2873 6.464895 AAATGAACGGCAAACAAACATATG 57.535 33.333 0.00 0.00 0.00 1.78
2785 2874 6.703607 TGAAAATGAACGGCAAACAAACATAT 59.296 30.769 0.00 0.00 0.00 1.78
2804 2893 9.107177 TCAAAGCAAACACAAATACATGAAAAT 57.893 25.926 0.00 0.00 0.00 1.82
2806 2895 8.659925 ATCAAAGCAAACACAAATACATGAAA 57.340 26.923 0.00 0.00 0.00 2.69
2808 2897 8.659925 AAATCAAAGCAAACACAAATACATGA 57.340 26.923 0.00 0.00 0.00 3.07
2814 2903 8.907222 AATAGGAAATCAAAGCAAACACAAAT 57.093 26.923 0.00 0.00 0.00 2.32
2816 2905 9.638239 GATAATAGGAAATCAAAGCAAACACAA 57.362 29.630 0.00 0.00 0.00 3.33
2818 2907 7.044052 GCGATAATAGGAAATCAAAGCAAACAC 60.044 37.037 0.00 0.00 0.00 3.32
2834 2923 5.407407 AATACAGGTCCAGCGATAATAGG 57.593 43.478 0.00 0.00 0.00 2.57
2853 2942 6.372185 GGTAACACGTGCACATAACAAAATA 58.628 36.000 17.22 0.00 0.00 1.40
2869 2958 2.749776 TCATGCGATATGGGTAACACG 58.250 47.619 0.00 0.00 39.74 4.49
2871 2960 5.129634 ACAAATCATGCGATATGGGTAACA 58.870 37.500 0.00 0.00 39.74 2.41
2872 2961 5.689383 ACAAATCATGCGATATGGGTAAC 57.311 39.130 0.00 0.00 0.00 2.50
2876 2965 6.094719 CCATAAACAAATCATGCGATATGGG 58.905 40.000 0.00 0.00 37.96 4.00
2879 2968 6.579666 AGCCATAAACAAATCATGCGATAT 57.420 33.333 0.00 0.00 0.00 1.63
2893 2982 8.413229 ACACAAATCATATACCAAGCCATAAAC 58.587 33.333 0.00 0.00 0.00 2.01
2921 3010 9.628500 TGATCAAAGATAGTAGTAGCAGAGTTA 57.372 33.333 0.00 0.00 0.00 2.24
2972 3061 9.860650 AACCAGGAAGTACAAATGCATATATAA 57.139 29.630 0.00 0.00 0.00 0.98
2975 3064 9.502091 GATAACCAGGAAGTACAAATGCATATA 57.498 33.333 0.00 0.00 0.00 0.86
2976 3065 7.448469 GGATAACCAGGAAGTACAAATGCATAT 59.552 37.037 0.00 0.00 35.97 1.78
2978 3067 5.594317 GGATAACCAGGAAGTACAAATGCAT 59.406 40.000 0.00 0.00 35.97 3.96
2979 3068 4.947388 GGATAACCAGGAAGTACAAATGCA 59.053 41.667 0.00 0.00 35.97 3.96
2980 3069 4.035208 CGGATAACCAGGAAGTACAAATGC 59.965 45.833 0.00 0.00 35.59 3.56
2981 3070 4.574828 CCGGATAACCAGGAAGTACAAATG 59.425 45.833 0.00 0.00 35.59 2.32
2982 3071 4.226620 ACCGGATAACCAGGAAGTACAAAT 59.773 41.667 9.46 0.00 35.17 2.32
2983 3072 3.583966 ACCGGATAACCAGGAAGTACAAA 59.416 43.478 9.46 0.00 35.17 2.83
2986 3075 2.762327 TCACCGGATAACCAGGAAGTAC 59.238 50.000 9.46 0.00 35.17 2.73
2987 3076 3.104519 TCACCGGATAACCAGGAAGTA 57.895 47.619 9.46 0.00 35.17 2.24
2989 3078 2.485479 CCATCACCGGATAACCAGGAAG 60.485 54.545 9.46 0.92 35.17 3.46
2990 3079 1.488812 CCATCACCGGATAACCAGGAA 59.511 52.381 9.46 0.00 35.17 3.36
2991 3080 1.128200 CCATCACCGGATAACCAGGA 58.872 55.000 9.46 0.00 35.17 3.86
3002 3097 0.729116 GCACACAGATTCCATCACCG 59.271 55.000 0.00 0.00 0.00 4.94
3022 3117 4.698201 TTCTCCCATCAACTTGTACACA 57.302 40.909 0.00 0.00 0.00 3.72
3035 3130 5.211201 CCAATCCTTGGTATTTTCTCCCAT 58.789 41.667 0.00 0.00 45.93 4.00
3068 3163 7.130681 AGATATCTATAAGGGCCTGCAATAC 57.869 40.000 6.92 0.00 0.00 1.89
3078 3174 7.810282 CACGAAACAGTGAGATATCTATAAGGG 59.190 40.741 4.89 0.00 44.43 3.95
3082 3178 6.294564 GGCCACGAAACAGTGAGATATCTATA 60.295 42.308 4.89 0.00 44.43 1.31
3085 3182 3.430929 GGCCACGAAACAGTGAGATATCT 60.431 47.826 4.47 4.47 44.43 1.98
3088 3185 1.621317 TGGCCACGAAACAGTGAGATA 59.379 47.619 0.00 0.00 44.43 1.98
3107 3217 5.664457 TGCAGAGTATTGACCATAGTTCTG 58.336 41.667 0.00 0.00 35.33 3.02
3112 3222 5.480642 AGGATGCAGAGTATTGACCATAG 57.519 43.478 0.00 0.00 0.00 2.23
3183 3293 2.169352 AGAAATGGGTGAGGTCGATCTG 59.831 50.000 0.91 0.00 0.00 2.90
3201 3311 7.927629 CCCTTGTCTCAATTCAATCAAAAAGAA 59.072 33.333 0.00 0.00 0.00 2.52
3272 3746 7.079182 TGTCTCACGTTAACTTGTTTCAAAT 57.921 32.000 11.42 0.00 0.00 2.32
3290 3764 3.819368 TCCTTTTGTGCAGATTGTCTCA 58.181 40.909 0.00 0.00 0.00 3.27
3478 3956 0.737367 TCTGCTCCAAATCGTCTGCG 60.737 55.000 0.00 0.00 39.92 5.18
3481 3959 3.902881 ATTCTCTGCTCCAAATCGTCT 57.097 42.857 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.