>input_sequence_49467
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-----------------------------ATGAAGTGCTACCACGATACCTTTGCACTGCAGCTGTTCCTTCATCTACTC
TATGTCAATCCCCACAGGGCTACGGCGGAACTGGAAACCCTATGCCGTGTCCTAGAGGAGAACAGAAACAATACTGCTAA
GATGCTGCTTATGGTCTGCTACAACGAGCTCCCTAGCCATCACAAGAGCTGCTTGATGTACCTATCAATCTTTCCTCAAG
GACACATAATCATGAGAGCTGATCTGCTGAGGAGATGGGTCTGTGAAGGACTGATAACCAAAAGAAGCGCAGGGACGAGC
ACGCTGCATGATCAGGCCGAGCGCATCTTCGACTCACTGGTCACTCGAGGCTTTATATGTCCAGGAGAAATCAGCTCTGC
AGGCAAGATTAAGAGCTTTACATTGAATTCTATTGTTCATGACTTCATCGTTACAGATGTAGGCTTCGTGGATACATCAT
CACGGCCTGAGCTAGCTCACCGCTTCTCCATCAACAGTGGGGTAGCAATACAGGAAGAACCTCTTTCTGAGTCTGATTCT
GATCCATCCGGCCATGGCATCTTAACTACAATTGAGTCTCTGACTGAATCTGATCAATGGCAGTTTCTGAAGGTGCTGGA
TCTTCGAGGCTGCAAAGGGCTGCAGAAGAAGCATCTAAACAGTAT------TTGCAAAATACTGCTGCTCAAGTACTTGA
GCCTCAGGAACACAGATGTCGCTGAACTGCCGAAGGACATTGAGAAGTTGCAGTGCCTGCAGACATTGGATATCCGGCAG
ACAGCGGTACGGGTACTTGCCACAAAATCTGTTGTGCTTCCAATGCTAAAGCATCTGCTTGCTGGGAAGAGAGACTCTCC
GACTCCAAACAATGACTCTGAATCTGATACTGATAGGTTTGAAGAGTCGTTTGCGGCGGTGCGCCTTCCCAGGAGCATCC
GAAGAATGGAAAAACTTGAGGTGCTCTCCCATGTTGAAGTTGCCCACAGTGATGATCTGACTGACGTCGGCAAGCTGCTA
CGTCTTAGAAAGCTTGGGGTGATTCTCCAGGGTAAGAAAGAAGAATTGGAACTTCTGTTCCAGCAGATCGAAAAATTGAA
GGGTTGCCTCCGCTCCCTGTCAATCCAGATGGACCAGCACACAAAAAGCGAGGGCGAATTGCCCTCACC-------TCCA
AAAAATCTTCAGAGCCTGAACATCCGCAGCATCACAGGTGGGCTTTACCTGTGGATTGCAGGGCATGACCAACTCACCAA
GGTAACACTGAGCGAGACCGGCCTTGGGGAAGAGGCTCTACGCATCCTTGGCCAGCTTAGGATCCTGCGCTGCCTCAGGC
TTCGACGCAAGTCTTACGTCGAGAGCCAACTCAAATTCAAAAAAGAAGAATTCAAGAGCCTCAAGTCTCTAGTTGTCGAG
GGCAGTGACATCACCAGCATCACCTTTGAGACTGGGGCAGCTCCTAAGATGGAGATGATTTTCTGGTCTTTTGTCTCCAT
GGAAATTCCTTCTGGACTTAATCGCCTA-CCAAGTTGA------------------------------------------
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>chr4D_1_TraesCS4D01G273700
TGCACCTTGCCGAGTCCCACAACCGTGACAACCAGGTCCGGGCGTGGATGAAGCAAGTGGCTGGCCTCAGCCGCGACTGC
GAGGGCAACGTCGAGCTCTACGTCCAGTACGTCGGAGGTGCTGGCCCCGGCGCCAGAAAGGGCGTCCTGGGCTCCTTGCT
CCGGATGCTCCGCTTTGTGCGGACCATGTCTGCCCGCCACCGTATGGCGACGCGGATCCGGGAGCTCAAGGTCCGGGCCC
GTGACGTTGGCGACAGGCGGGAGAGGTATGGCGTCACTGTCCCGCCGGCACCATCTCGCACCATCCCCGATGCTCCGGCT
CCACAGCCCGGCGGACAGGAGGAGGAGGAGGATCTGCGGAGACGTGAGTTGCTCTACGGTGAACCACCGGACACTATAGA
GGAGGAAAGCAACAAGGTCCTGAAGTGTCTGCTTTACAAAGAATTTGTTCATGATGCTAGCATTGAAAGTCAAAGCGATT
ATAACAAGAGGAAGTACAGGTTGATCTGTATTGAAGGAGAAGGTAGCGTGGGGAAGACAACTATCGCACAGAAGGTATAC
GAGCACACTTCCGTGGTGAGGTCCTTCGACCACATGGTCTGGATCAACATTGTAAAGTCGTACAGGCAATATTCTGAGCT
TCGCAGGGAGATACTACAACAACTACACCCTCAAAGCAGGATGGTCAGTTTGTGGAAGGATGACAAGGAATCACAAAATA
GCGAGCTTCTGTTTGGTAAAAGCATTCTAGTCATTCTGGATGCCGTCGGTGGCCAGGCAGAAT-----------------
----------------------------------------------------TTTCCTGTGAAATAAACCGTGACTTTAG
GCATTATGATGTCTGCGCTAATAGTGCTCTAATAATGACCGGAAATTACTTTGGTGACTGGATTGGTGATGATGCAGGAT
TTCATACCAAAAAATTCCGTTGTGAAACACGTCCAATTTTTTTTAGGACAAGAGCATTGGACCTTGCAAAGTGTGAAGTT
TTTTTAGGACAAGAGTATTGGCCGTTTTAATGAAGTGCTACCACGATACCTTTGCACTGCAGCTGTTCCTTCATCTACTC
TATGTCAATCCCCACAGGGCTACGGCGGAACTGGAAACCCTATGCCGTGTCCTAGAGGAGAACAGAAACAATACTGCTAA
GATGCTGCTTATGGTCTGCTACAACGAGCTCCCTAGCCATCACAAGAGCTGCTTGATGTACCTATCAATCTTTCCTCAAG
GACACATAATCATGAGAGCTGATCTGCTGAGGAGATGGGTCTGTGAAGGACTGATAACCAAAAGAAGCGCAGGGACGAGC
ACGCTGCATGATCAGGCCGAGCGCATCTTCGACTCACTGGTCACTCGAGGCTTTATATGTCCAGGAGAAATCAGCTCTGC
AGGCAAGATTAAGAGCTTTACATTGAATTCTATTGTTCATGACTTCATCGTTACAGATGTAGGCTTCGTGGATACATCAT
CACGGCCTGAGCTAGCTCACCGCTTCTCCATCAACAGTGGGGTAGCAATACAGGAAGAACCTCTTTCTGAGTCTGATTCT
GATCCATCCGGCCATGGCATCTTAACTACAATTGAGTCTCTGACTGAATCTGATCAATGGCAGTTTCTGAAGGTGCTGGA
TCTTCGAGGCTGCAAAGGGCTGCAGAAGAAGCATCTAAACAGTAT------TTGCAAAATACTGCTGCTCAAGTACTTGA
GCCTCAGGAACACAGATGTCGCTGAACTGCCGAAGGACATTGAGAAGTTGCAGTGCCTGCAGACATTGGATATCCGGCAG
ACAGCGGTACGGGTACTTGCCACAAAATCTGTTGTGCTTCCAATGCTAAAGCATCTGCTTGCTGGGAAGAGAGACTCTCC
GACTCCAAACAATGACTCTGAATCTGATACTGATAGGTTTGAAGAGTCGTTTGCGGCGGTGCGCCTTCCCAGGAGCATCC
GAAGAATGGAAAAACTTGAGGTGCTCTCCCATGTTGAAGTTGCCCACAGTGATGATCTGACTGACGTCGGCAAGCTGCTA
CGTCTTAGAAAGCTTGGGGTGATTCTCCAGGGTAAGAAAGAAGAATTGGAACTTCTGTTCCAGCAGATCGAAAAATTGAA
GGGTTGCCTCCGCTCCCTGTCAATCCAGATGGACCAGCACACAAAAAGCGAGGGCGAATTGCCCTCACC-------TCCA
AAAAATCTTCAGAGCCTGAACATCCGCAGCATCACAGGTGGGCTTTACCTGTGGATTGCAGGGCATGACCAACTCACCAA
GGTAACACTGAGCGAGACCGGCCTTGGGGAAGAGGCTCTACGCATCCTTGGCCAGCTTAGGATCCTGCGCTGCCTCAGGC
TTCGACGCAAGTCTTACGTCGAGAGCCAACTCAAATTCAAAAAAGAAGAATTCAAGAGCCTCAAGTCTCTAGTTGTCGAG
GGCAGTGACATCACCAGCATCACCTTTGAGACTGGGGCAGCTCCTAAGATGGAGATGATTTTCTGGTCTTTTGTCTCCAT
GGAAATTCCTTCTGGACTTAATCGCCTA-CCAAGTTGAAGAAGCTTGAACTCAAAGGTGACAGCTGCGACATAGACTCGC
TGAGAGAAGGAATTGAATATCATGCCAACCATCCTGAACTGATGTACAATGGACAGCTGCAACACTATTAAGCTGGAACT
GCAGCTGCAAGTGCTGCCTCAACTCCGTCTCCGTGAGCAATCGATCAATTACTCTCCATCACACGAAGGTCAAGTTGATA
CATCA-----ATTTATCCTTGAATAAAGTTGCAGCTGAAGAAGATTCTGGCCCTCTTCTTCCAGCAGCCGCGCATATGTT
TGTTTGCCGTTCATTTTCATGTATTTGTGTTTGCTTTGATTTCCTATTATCGCTGGACCTGTATTTTGTTATGTGCACGT
GTTACCCATATCGCATGATTTGTTTATGGCTTGGTATATGATTTGTGTGTAACTCTGCTACTACTATCTTTGATCATGCT
TGTCATGAGTGAGTGAACAATTATATATGCATTTGTACTT------CCTGGTTATCCGGTGATGGAATCTGTGTGCTGTG
TACAAGTTGATGGGAGAAAATACCAAGGATTGGTTATCTGAAG-TATTGCAGGCCCTT-ATAGATATCTCACTGTTTC--
-----------GTGGCCAGAACTATGGTCAATACTCTGCATCCTTTTGCTCTGTGCGTTTCCTTTTCAGCACACCAGTGT
GGCCTCAGTGGTCAGATCGACCTCACCCATTTCTTTTTGATTGAATTGAGACAAGGGGCCTCCCATTGATTTCCACTAGA
GAAACTACAGCAG-------------------------------------------------------------------
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---------------------------------------------------------CACATGTTATTTGAAACAAGTTA
ACGTGAGACAATCTGCACAAAAGGAACAGGGTGGCA----CAGCACAGCTCGAGCTGAGCTCTGAGTGCGAAACTGTTTT
CTGGGTGTCCAATGCCCGCTTGCCACGGGCGTCAACGGCGGAGATGGACCGAGTTTGAGTTTGCGATGGCACGGCCGCGA
CGGCGCCGGCGCCGGCGGCAGGTCATGCAGGAGGGCGCAGACGATTTGGAGCAGAGAATAGGAGGACTCGTG
>chr4A_1
TGCACCTTGCCGAGTCCCACAACCGCGACAGCCAGGTCCGGGCATGGATGAAGCAAGTGGCTGGCCTCAGCCGCGACTGC
GAGGGCAACGTCGAGCTCTACGCCCAGTACGTCGGAGGTGCTGGCCCTGGCGCCAGAAAGGGCGTCCTGGGCTCCTTGCT
CCGGATGCTCCGCTTTGTGC------------------------------------------------------------
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-------------------------------------------------------------------ACGGAAGGTGTAC
GAGCACCCGTACGTGGTGAGCAAGTTCGACCACATGATCTGGGTCAACAATGGAGGGCTCAACAGAGAATATCACGAGGT
ATGTAAGGAGATACTAGAACAACTACAACA------CAAGTTCCCTAGATCATACGAAAGCAT-----------------
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---------------TATTGGCAGTTTTAACCAAGTGCTACCACAGCACCCTTGCAGCGAAGCTCTTCCTTCATCTACTC
TATGTCAATCCCCACAGGGCTACAGCGGAACTGGAAACCCTATGCCGTGTCCTAGAGGAGAACAGAAACAATACTGCTAA
GACGATGCTTATGGTCTGCTACAACGAGCTCCCTAGTCGTCACAAGAGCTGCTTGATGTACCT-TCAATCTTTCCTCAAG
GCCACATAACCATGAGAGCTGATCTGCTGAGGAGGTGGGTCTGTGAAGGACTGATAACCAAAAGAAGCGCAGGGACGAGC
ACGCTGCATGATCAGGCCGAGCGCATCTTCGACTCACTGGTCACTCGAGGGTTCATATGTCCAGGAGAAATCAGTGATGC
AGGAAAGATCCAGAGCTTTACATTGAATCCTGTTGTTCATGAGTTCATCACTACAGATGTAGGCTTCGTCGATACATCAT
CACGGCCTGAGCTAGCTCACCGCTTCTCCACCAACAGTGGGGTAGCAATACAGGAAGAATCTCCTTCTGAA------TCC
GATCCATCCGGCCATGGCATCTTAACTACCATTGAGTCTCTGTCTGAATCTGCTCAATGGCAGTTTCTGAAGGTGCTGGA
TCTTCGAGGCTGCAAAGGGCTGCAGAAGAAGCATCTAAACAGTGTTTGCAATTGCAAGATACTGCTGCTCAAGTACCTGA
GCCTCAGGAACACAGATGTCGTTGAACTGCCGAAGGACATTGAGAAGTTGCAGTGCCTGCAGACATTGGATATCCGGCAG
ACAGCGGTACGGGTACTTGCCACAAAATCTGTTATGCTTCCAATGCTAAAGCATCTGCTTGCTGGGAAGAGAGACTCTCC
GACTCCAAGCAAC------GACTCTGATACTGATAGGTTCGAAGAGTCGTTTGCGGCGGTGCACCTTCCCAGGAGCATCC
GAAGAATGGAAAAACTCGAGGTGCTCTCCCATGTTGAAGTTGCCCACAGTGATGATCTGACTGATGTTGGCAAGCTGCTA
CGTCTCAGAAAGCTTGGGGTGATTCTCCAGGGTAAGAAAGAAGAACTGGAACTTCTGATCCAGCAGGTTGAAAAATTGTG
TGGTTGCCTCCGCTCCCTGTCAATCCAGATGGACCAGCAGACGAAAAGCGAGGGCGAATTGCCCTCACCAGTCACCTCCA
AGAAATCTCCAGAGCCTGAACATCCACGGCATCACAGGTGGGCTTTACCTGTGGATTGCAGGGCATGATCAACTCACTAA
GATAACACTGAGTGAGACCGGCCTTGGGGAAGAGGCGCTAAGCATCCTTGGCCAGCTTAGCATCTTGCGCTGCCTCAGGC
TTCGACGCAAGTCTTACATCGAGAGCCAACTCAAGTTCAAGGTAGGAGAGTTTAAGAGCCTCAAGTCTCTAGTTGTCGAG
GGCAGCAACATCACCAGCATCACCTTTGAGGTTGGGGCAGCTCCTAAGCTTGAGCTGATCGTCTGCTCATTTGTCTCCAT
GGAAATTCCTTCTGGACTTAATCGCCTTCCCAAGTTGAAGAAGCTTTTACTCAAAGGTGACATCTGCGACATAGACTCAG
TCAAAGAAGAAATTAAAGAGCATCCCAACCATCCTGAACTGAAGTACAATGGACAGCTGCAACGCTATGAAGCTGGAACT
GCATCTGCAAGTGCTGCCTCAACTCCGT------GAGCAATCGATCAACCACTATCCATCACACAAAGCTCAAGCCGATA
CATCTGGTTCATTTATCCCTGAATAAAGGTGCAGCTGAAGAAGATTGTGGACCTCTTCTTCCGGCTGCCATG--TATGTT
TGTTTGCCGTTCTTCTGCATGTGTGTTTGTTTGCTTTGATTTTCTATTATCGCTGGACCTGGATTTTGTTATGTGCATGC
CTTAGCCGTATCGCATGGTTTATTTATGGCTTGGTATATGATTTGTGTGGAACTCTGCTACTACTATCTTTGATCATGCT
TGTCATGAGTCAGCAACTCTGCTACTGCTATCTTTGATCATGCTTGCCTGGTTATCTGGTGATGGAATCTGTGTGCCGTG
TACAAGTTGGTGGGAGAAAACACCAAGGATTGGTTATCTGAAATTATTGCAGGTCCTGAATGGACATCTCACTGTTTCTC
ACTGCTGCCTCGTGGCTAGAATTATGGTC-ATACTCTGCATCCTTTTGCTCTGTGCGTTTCCTTTTCAGCACACCAGTGT
GGCCTCAGTGGTAAGATCAACCTCACCTTTGTCTTTTTGATTGAATTGAGACAAGGGGCTTCCCATTGGTTTCCACTAGA
GAAACTACAGCACCACATTGTCAGTACTATGGAAGTGGCAAAGGTGCAGGCAAGACAGGGGAGACGCAAAGAAGGCGCGG
CGAAAGCGTAAAGTCATCGCGGGAGCGTTTGAATTCGAATGTGTGCGTGACGAGCCGTGAGCCTTGTAATGGTGTGGGCC
GTGGGCCGTGTGGGTGCGGGCGTCACTCGCGAGTATATAAGCGAGGTGTGTCGTTGTGGATAGGTATCGAATATTTGAAA
TGAAATATCCTGAGCCACAGGCTCCTCTTCCTTCTCTCGCTGTCTTCTCCTAGCTTCTCACCTCTCTGCTAGCCTCTGAG
ATCCTACCCTACCCTTCCTCGCCGCCGGCGAACTCTTACCACCCCTAGGTCGTGACACACATGTTCTTTGGAACAAGTTG
ACACCAGACAATCTGCACAAAAGGAACAGGGCGGCG----CAGC-----TCGAGCTGAGTTCTGAGTGCGAAACTGTTTT
CTAGGTGTCCAATGCCGCTGGCCAC--GGCGTCAACGGCAGAGATGGACCGAGTTTG------CGACGGCACGGCCACGA
------CGGCGCCGGCGGCAGGTCATCCAGGAGGGTGCGGACGATTTGGAGCAGAGAATAGGAGGACTTGTG
>chr4B_1
TGCACCTTGCCGAGTCCCACAACCGCGACAACCAGGTCCGGGCGTGGATGAAGCAAGTGGCTGGCCTCAGCCGCGACTGC
GAGGGCAACGTCGAGCTGTACATCCAGTACGTCGGAGGTGCTGGTCCCGGCGCCAGAAAGGGCGTCCTGGGCTCCTTGCT
TCGGATGCTTCGCTTTGTGCGGACCATGTCCGCCCGCCACCGTATCGCGACGCGGATCCGGGAGCTCAAGGTCCGGGCCC
GTGACGTTGGCGACAGGCGGGAGAGGTATGGCGTCACTGTCCCGCCGGCACCATCTCGCACCATCCCCGATGCTTCGGCT
CCGCAGCCGGGCGGACCTGAGGAGGAGGAGGATCTGCGAAGACGTGAGTTGCTCTGTGGT------------------GA
GGAGGACATCAACAAGGTCATTGAGTGTCTCCCCCAAGAGAAC-------------------------------------
--------------------TTGATCTGTATTGAAGGAGAGGGTAGCGTGGGGAAGACAGATATCGCACGGAAGGTGTTC
AATCACCCTTCCGTGGTGACAAATATCCGCCACAGGGTTTGGGTCAACAATGGAGGGCTGAACAGAGAATATCACGAGGT
ACGTAAGGAGATACTAGAACAACTACAACA------CAAGATGAAGAGCTTGAGGGAAATTGGCAAGCACTCAAGAATTT
CTGAGTATATGTCAGATGGAAACGTTCTAATCGTTCTTGATGGTGTCAATGACCAACCAAAGGACTACAGTTCCCTAAGT
TGTTCTGAACTCGAAGCATTTACATACAATGCAGTACCTCTGAGTGTTCATCTTTCCGCTGGATTATACAGTGACTTTCG
TCGGAGAGATGTTTATG------------TAATAATGACCGGAAATCACTTTTATAATGACCACATACGCA---CAGGAT
ATTATGCCAAAAAGTTCCGGTGTGAAACTCGTCCGAATTTTTTCAGAAACAGAGCATTGGGCCTTGCCAAGTGTGAAGGT
TCTGCT--------GTATTGGCAGTTTTAACCAAGTGCTACCACGGCACCCTTGCAGCGCACCTGTTCCTTTGTCTACTG
TATGTCAATCCTCGCAGGGCTACGGCGGAACTGGAAACCTTATGCCGTGTCCTAGAGGAGAGCAGAAACAATACTGATAA
GACGATACTTATGGTCTGCTACAACGAGCTCCCTGGTCATCACAAGAGCTGCTTGATGTGCCTATCAATCTTTCCTCAAG
GACACATAATCATGAAAGCTGATCTGCTGAGGAGATGGGTCTCTGAAGGACTGATAACCAAAAGAAGCGTTGGGACGAGC
ACGCTGCATGATCAGGCCGAGCGCATCTCTGACTCACTGGTCACTCGAGGCTTTATATGTCCTGGAGAAATCAGCTCTGC
AGGCAAGATTAAGAGCTTTACATTGAATTCCATTGTTCATGATTTCATCGTTACAGATGTAGGCTTCGTGGATACATCAT
CACGGCCTGAGCTAGCTCACCGCTTCTCCATCAACAGTGGGGTAGCAATACAGGAAGAATCTCTTTCTGAGTCTGATTCC
GATCCATCCGGCCATGGCATCTTAACTACAATTGAGTCTCTGGCCGAATCTGGTCAATGGCAGTTTCTGAAGGTGCTGGA
TCTTCGAGGCTGCAAAGGGTTGAAGAAGAAGCATCTAAACAGTAT------TTGCAAGATACTGCTGCTCAAGTATTTGA
GCCTCAGGAATACAGATGTCGCTGAACTGCCGAAGGACATTGAGAAGTTGCAGTGCCTGCAGACATTGGATATCCGGCAG
ACGGCGGTACGGGTACTTGCCACAAAATCTGTTGTGCTTCCAATGCTAAAGCATCTGCTTGCTGGGAAGAGAGACTCTCC
GACTCCAAGCAAC------GACTCTGATACTGATAGGTTCGAAGAGTCGTTTGCGGTGGTGCGCCTTCCCAGGAGCATCC
GAAGAATGGAAAAACTTGAGGTGCTCTCCCATGTTGAAGTTGCCCATAGTGACGATCTGACTGACGTCGGCAAGCTGCTA
CGTCTTAGAAAGCTTGGGGTGATTCTCCAGGGTAAGAAAGAAGAACTGGAACTTCTGTTCCAGCAGGTTGAAAAATTGTA
TGGTTGCCTCCGCTCCCTGTCAATCCAGATGGACCAGCAGACGAAAAGCGAG----------------------------
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------AGTGGTAAGATCGGCCTCACCTTGGATTGCTC----------AGACAAGGGGCCTCCCATTGATTCCCACTAGA
GAAACTACAGCAG-------------------------------------------------------------------
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---------------------------------------------------------CACATGTTGTTTGAAACAAGTTA
ACGCGAGACAATCTGCACAAAAGGAACAGGGTGGCACACACAGC-----TCGAGCTGAGCTCTGGGTGTGAAACTGTTTT
CTGGGTGTCCAATGCCGCTGGCCAC--GGCGTCAACGGCGGAGATGGATCGAGTTTGAGTTTCCGACGGCACGGCCGCGA
CGGCGCCGGCG-------------------------------------------------------------
>SNPs
-------------------------S------------------------------------------------------
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------------------------------S--------------S----------------------------------
--------------------------------------------------------------------------S-----
--S-----S-------SS--------------------S----------------SS---SSSSSSSSSSSSSSSSSS--
------S-S----------S-SS-------S-SSS-SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------------------S------------------SS--------S------S---
------S-------------SSSS------------------S------S--S-SS-SS-S----SS-----SSS---S-
S--S-S----------S----------S-SSSSSSS--S----SSS--S------S-SSS--S----S-S---SS--S-S
SS---SS-S---SS-S-SS--S-S-----S--S----S----SS---SS--S---SS--S-SS-----------------
---------------------------------------------------------SS--S-S--S--S--------S-
S-SSSSS-----S-SS-SSSSSSSSSSSS-----------------S-----SS-S-SSSSSSSSSSSSSSSSS------
S-S--S-------S-----S--------S-----S-S------S--S-SS----------S------S----------S-
-S-SSSSSSSSSSS--------S-------SS-------------SS---S-----SS----------------------
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--S-S-------------------------------S-------------------------------------------
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------------------------------------------S-------------------------------------
-----------------------------------------------------------S-------------------S
------------------------------------------S---------S---------------------------
---------------------------------------------------------S----------------------
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--------S---SSSSSSS--S-----------------S----------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S--------------------S-S---------S-
S--------------------------------------S--S-------------------------------------
-S------S----------------S-S----------------------------------------S--------S--
-S----------S-----------------------S---S-------------------S---S---------------
-----------------S----------------S-----SSS--S---S--S---------------------------
-----SS-----------------------SS----------------S-S---S----SS----S--S-----------
---------------------------S------------------SS--------------S---------------SS
-S-S-----S----S--S-S---S------------------S--------------------S----S-----------
---S------------------------SSSSSS--------------SS---S----------S---S-----SS----
----S-------------S---------S-----------------S---S-----------S--S---SS-SS------
------------S-S-S-----S-S-S---------------S------------------S---------------S-S
S---S--S---------S---S---------------------------S------------------------------
----------S--SS-SSSSSSSSS-SSSSSS--SS-SSS----------------S-------------------S---
---------S----------S---------------------S----------S---S---S--S---------------
----------------S----S-------S--------------------------------------------------
------------S--------------SS-S-------------------------------------------------
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-----------------------------------------------------------------S--------------
---S----------------------------------------SSSSS-------------------------------
----------------SSSSSS-SSSS-----------------------------------S---S-------------
--------------------------S--------S--S-----------------------------S---
>forward_684
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------------------------ACACCCTCAAAGCAGGATGG------------------------------------
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>reverse_2512
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-------------------------------CTGGGGCAGCTCCTAAGATG-----------------------------
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>forward_858
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--------------------------------------TGGCCAGGCAGAATTTTCCT----------------------
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>reverse_2866
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-----------------------------------------------------------------AGCCGCGCATATGTT
TGTTT---------------------------------------------------------------------------
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------------------------------------------------------------------------
