Multiple sequence alignment - TraesCS4D01G263400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G263400 chr4D 100.000 2909 0 0 1 2909 434273510 434276418 0.000000e+00 5373
1 TraesCS4D01G263400 chr4B 94.238 1857 75 15 841 2685 533499464 533501300 0.000000e+00 2808
2 TraesCS4D01G263400 chr4B 82.353 255 29 10 167 408 533498792 533499043 1.060000e-49 207
3 TraesCS4D01G263400 chr4B 87.821 156 6 3 1 143 533498438 533498593 1.390000e-38 171
4 TraesCS4D01G263400 chr4A 97.098 1585 44 2 390 1972 35626003 35627587 0.000000e+00 2671
5 TraesCS4D01G263400 chr4A 92.927 919 47 6 2008 2909 35627584 35628501 0.000000e+00 1321
6 TraesCS4D01G263400 chr4A 86.857 175 11 3 4 166 35625506 35625680 4.950000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G263400 chr4D 434273510 434276418 2908 False 5373.000000 5373 100.000000 1 2909 1 chr4D.!!$F1 2908
1 TraesCS4D01G263400 chr4B 533498438 533501300 2862 False 1062.000000 2808 88.137333 1 2685 3 chr4B.!!$F1 2684
2 TraesCS4D01G263400 chr4A 35625506 35628501 2995 False 1392.333333 2671 92.294000 4 2909 3 chr4A.!!$F1 2905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 706 0.379669 CAACCAAGCGAGGATGATGC 59.620 55.0 4.39 0.00 33.63 3.91 F
1412 1922 0.737219 GAGGTGGATGACTTGCATGC 59.263 55.0 11.82 11.82 44.74 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2238 0.321122 GAACTGTCAGGACCCTGCAG 60.321 60.0 25.09 25.09 45.08 4.41 R
2247 2761 0.543883 TCTGCTTGCAGGAGTCCTCT 60.544 55.0 20.62 0.00 35.01 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 121 6.096282 TCCACCAGCTTAAACCTTTATTATGC 59.904 38.462 0.00 0.00 35.06 3.14
119 134 7.167535 ACCTTTATTATGCTGGCAAATGTTTT 58.832 30.769 0.00 0.00 0.00 2.43
143 158 3.808466 TCGAGAACTGCTATTGATGCT 57.192 42.857 0.00 0.00 0.00 3.79
224 554 3.845178 TGCTGTGTCACCTTAGATAACG 58.155 45.455 0.00 0.00 0.00 3.18
236 566 6.750963 CACCTTAGATAACGTGAAGTCCTTAC 59.249 42.308 0.00 0.00 0.00 2.34
242 572 7.215085 AGATAACGTGAAGTCCTTACTGTTTT 58.785 34.615 0.00 0.00 35.62 2.43
243 573 5.479716 AACGTGAAGTCCTTACTGTTTTG 57.520 39.130 0.00 0.00 35.62 2.44
248 578 5.971792 GTGAAGTCCTTACTGTTTTGCTTTC 59.028 40.000 0.00 0.00 35.62 2.62
250 580 4.448210 AGTCCTTACTGTTTTGCTTTCGA 58.552 39.130 0.00 0.00 33.57 3.71
256 586 6.577427 CCTTACTGTTTTGCTTTCGATGTTAC 59.423 38.462 0.00 0.00 0.00 2.50
269 599 3.129813 TCGATGTTACTGAGTTATGCCGT 59.870 43.478 0.00 0.00 0.00 5.68
287 620 2.268298 CGTGTTACCACTAGCCATCAC 58.732 52.381 0.00 0.00 39.55 3.06
289 622 1.287425 GTTACCACTAGCCATCACGC 58.713 55.000 0.00 0.00 0.00 5.34
291 624 2.061509 TACCACTAGCCATCACGCTA 57.938 50.000 0.00 0.00 40.39 4.26
295 628 2.820197 CCACTAGCCATCACGCTATCTA 59.180 50.000 0.00 0.00 40.49 1.98
304 637 4.202161 CCATCACGCTATCTAAGAGGTTGT 60.202 45.833 0.00 0.00 0.00 3.32
308 641 5.035443 CACGCTATCTAAGAGGTTGTACAC 58.965 45.833 0.00 0.00 0.00 2.90
316 657 7.218228 TCTAAGAGGTTGTACACGAAATGTA 57.782 36.000 0.00 0.00 43.19 2.29
322 663 5.637810 AGGTTGTACACGAAATGTAGTGATG 59.362 40.000 2.80 0.00 44.65 3.07
325 666 7.277098 GGTTGTACACGAAATGTAGTGATGTAT 59.723 37.037 2.80 0.00 44.65 2.29
354 695 2.959030 AGTCTTCCCTTTTCAACCAAGC 59.041 45.455 0.00 0.00 0.00 4.01
357 698 1.604604 TCCCTTTTCAACCAAGCGAG 58.395 50.000 0.00 0.00 0.00 5.03
362 703 2.559698 TTTCAACCAAGCGAGGATGA 57.440 45.000 6.38 6.38 38.51 2.92
363 704 2.787473 TTCAACCAAGCGAGGATGAT 57.213 45.000 10.35 0.00 39.75 2.45
364 705 2.028420 TCAACCAAGCGAGGATGATG 57.972 50.000 6.38 0.64 35.78 3.07
365 706 0.379669 CAACCAAGCGAGGATGATGC 59.620 55.000 4.39 0.00 33.63 3.91
374 715 2.487934 CGAGGATGATGCCCAAGTTAG 58.512 52.381 0.00 0.00 0.00 2.34
375 716 2.158900 CGAGGATGATGCCCAAGTTAGT 60.159 50.000 0.00 0.00 0.00 2.24
376 717 3.069586 CGAGGATGATGCCCAAGTTAGTA 59.930 47.826 0.00 0.00 0.00 1.82
382 723 3.265737 TGATGCCCAAGTTAGTATGTGGT 59.734 43.478 0.00 0.00 0.00 4.16
389 730 6.235664 CCCAAGTTAGTATGTGGTTAACAGT 58.764 40.000 8.10 0.00 43.64 3.55
391 732 6.708949 CCAAGTTAGTATGTGGTTAACAGTGT 59.291 38.462 8.10 0.00 43.64 3.55
404 745 5.220796 GGTTAACAGTGTTGAAGTCTTCCAC 60.221 44.000 18.90 9.72 0.00 4.02
432 773 6.372659 TCAACTGAATGCTAAAATGGTCTCTC 59.627 38.462 0.00 0.00 0.00 3.20
440 781 6.115446 TGCTAAAATGGTCTCTCGATGAAAT 58.885 36.000 0.00 0.00 0.00 2.17
453 794 6.216569 TCTCGATGAAATGGCTAACTGTATC 58.783 40.000 0.00 0.00 0.00 2.24
455 796 5.985530 TCGATGAAATGGCTAACTGTATCTG 59.014 40.000 0.00 0.00 0.00 2.90
486 827 8.637099 TGACTCCATCTCATGTATCTTTCTTAG 58.363 37.037 0.00 0.00 0.00 2.18
523 864 7.086230 TGTGGTTTCGAAGCTTAGTTTAAAA 57.914 32.000 11.94 0.00 0.00 1.52
587 929 3.477210 AACACCTTGTTCTCTCACTCC 57.523 47.619 0.00 0.00 35.27 3.85
610 952 1.165270 GGGTTTCTCCATGTCAACGG 58.835 55.000 0.00 0.00 38.11 4.44
637 979 6.187727 TCTGAATTTTCTCTAACCACCTGT 57.812 37.500 0.00 0.00 0.00 4.00
793 1142 5.565637 GCCTTTTCTTTCTTGGGACTGATTC 60.566 44.000 0.00 0.00 0.00 2.52
803 1152 2.280628 GGGACTGATTCGCTAGGTTTG 58.719 52.381 0.00 0.00 34.27 2.93
822 1171 3.140325 TGTGGGCTGAGAAAAAGTAGG 57.860 47.619 0.00 0.00 0.00 3.18
883 1383 4.454728 TGGATGGTTGCTTATCTTTTGC 57.545 40.909 0.00 0.00 0.00 3.68
939 1439 7.504238 TGACTTCTAATATTGTTGGTGTTGGTT 59.496 33.333 0.00 0.00 0.00 3.67
947 1447 6.877611 ATTGTTGGTGTTGGTTAAGTAGAG 57.122 37.500 0.00 0.00 0.00 2.43
956 1456 6.964934 GTGTTGGTTAAGTAGAGTTTGTGTTG 59.035 38.462 0.00 0.00 0.00 3.33
1350 1860 6.660887 TTTCAGTTTGATTTTTCTGGCAAC 57.339 33.333 0.00 0.00 0.00 4.17
1404 1914 6.702282 GCAACTACTATAAAGAGGTGGATGAC 59.298 42.308 0.00 0.00 0.00 3.06
1411 1921 2.414994 AGAGGTGGATGACTTGCATG 57.585 50.000 0.00 0.00 37.34 4.06
1412 1922 0.737219 GAGGTGGATGACTTGCATGC 59.263 55.000 11.82 11.82 44.74 4.06
1721 2231 4.109766 CAAAGTGCATGCATGTCTATTGG 58.890 43.478 25.64 11.30 0.00 3.16
1728 2238 2.930950 TGCATGTCTATTGGCCCTAAC 58.069 47.619 0.00 0.00 0.00 2.34
1749 2259 0.326264 GCAGGGTCCTGACAGTTCAT 59.674 55.000 20.22 0.00 46.30 2.57
1885 2395 4.399303 GGCTTGAGTTGGCTAACATTGTAT 59.601 41.667 15.86 0.00 39.30 2.29
1911 2421 6.040278 TGAAATTTGTTACATCTGGCTGACAA 59.960 34.615 0.00 0.00 0.00 3.18
1994 2505 2.916716 CGTTGCCATCAATTTCTTTCCG 59.083 45.455 0.00 0.00 34.29 4.30
2000 2511 4.107622 CCATCAATTTCTTTCCGACATGC 58.892 43.478 0.00 0.00 0.00 4.06
2020 2531 7.996385 ACATGCTACAAAATTACCCTATCAAC 58.004 34.615 0.00 0.00 0.00 3.18
2125 2636 3.370104 TGGTGTTTCTGTTTCATTGGGT 58.630 40.909 0.00 0.00 0.00 4.51
2168 2682 7.406031 TCTCTGTAGAACTAACACTATTGGG 57.594 40.000 0.00 0.00 0.00 4.12
2184 2698 7.499232 ACACTATTGGGTATCACTATTTTCTGC 59.501 37.037 0.00 0.00 0.00 4.26
2247 2761 3.118038 GGTCTTACTGGGTGCCATTGATA 60.118 47.826 0.00 0.00 30.82 2.15
2520 3034 2.111384 TGATCCCACTAGAGCTGAACC 58.889 52.381 0.00 0.00 0.00 3.62
2533 3047 6.581171 AGAGCTGAACCCTTTAAAATTCTG 57.419 37.500 0.00 7.86 0.00 3.02
2549 3063 5.824904 AATTCTGTGTCATGTAATGCTCC 57.175 39.130 0.00 0.00 46.21 4.70
2563 3077 2.645838 TGCTCCTTTCTGCAGACTTT 57.354 45.000 18.03 0.00 34.84 2.66
2675 3191 4.212636 GCAGTTAAAGAAGTACCGAGCAAA 59.787 41.667 0.00 0.00 0.00 3.68
2676 3192 5.106673 GCAGTTAAAGAAGTACCGAGCAAAT 60.107 40.000 0.00 0.00 0.00 2.32
2712 3228 6.898041 TGTGCTATGTTGATGTCTTGTTTAC 58.102 36.000 0.00 0.00 0.00 2.01
2714 3230 6.797033 GTGCTATGTTGATGTCTTGTTTACAC 59.203 38.462 0.00 0.00 0.00 2.90
2715 3231 6.710295 TGCTATGTTGATGTCTTGTTTACACT 59.290 34.615 0.00 0.00 0.00 3.55
2717 3233 7.535258 GCTATGTTGATGTCTTGTTTACACTTG 59.465 37.037 0.00 0.00 0.00 3.16
2738 3254 2.480802 GAGTTTCTTGAAGGAGCGGAAC 59.519 50.000 0.00 0.00 0.00 3.62
2742 3258 1.416401 TCTTGAAGGAGCGGAACTGTT 59.584 47.619 0.00 0.00 0.00 3.16
2745 3261 0.875059 GAAGGAGCGGAACTGTTTGG 59.125 55.000 0.00 0.00 0.00 3.28
2749 3265 0.321298 GAGCGGAACTGTTTGGCCTA 60.321 55.000 3.32 0.00 0.00 3.93
2758 3274 3.858247 ACTGTTTGGCCTAGATCGTTAC 58.142 45.455 3.32 0.00 0.00 2.50
2760 3276 3.857052 TGTTTGGCCTAGATCGTTACTG 58.143 45.455 3.32 0.00 0.00 2.74
2761 3277 3.195661 GTTTGGCCTAGATCGTTACTGG 58.804 50.000 3.32 0.00 0.00 4.00
2785 3301 3.877874 CAGCAGCTGCAAATTGTCA 57.122 47.368 38.24 0.00 45.16 3.58
2820 3337 0.476771 TGGTTTCCTGTCCCAGAACC 59.523 55.000 7.53 7.53 38.23 3.62
2830 3347 2.093500 TGTCCCAGAACCGATTCATCTG 60.093 50.000 0.00 0.00 40.17 2.90
2865 3382 4.284829 TCATACTGGTTGCACTGATTCA 57.715 40.909 0.00 0.00 0.00 2.57
2866 3383 4.650734 TCATACTGGTTGCACTGATTCAA 58.349 39.130 0.00 0.00 0.00 2.69
2867 3384 4.455533 TCATACTGGTTGCACTGATTCAAC 59.544 41.667 0.00 0.00 41.19 3.18
2868 3385 2.653726 ACTGGTTGCACTGATTCAACA 58.346 42.857 7.31 0.00 43.06 3.33
2869 3386 3.225104 ACTGGTTGCACTGATTCAACAT 58.775 40.909 7.31 0.00 43.06 2.71
2870 3387 4.397420 ACTGGTTGCACTGATTCAACATA 58.603 39.130 7.31 0.00 43.06 2.29
2871 3388 4.456911 ACTGGTTGCACTGATTCAACATAG 59.543 41.667 7.31 7.08 43.06 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 90 5.979517 GCCAGCATAATAAAGGTTTAAGCTG 59.020 40.000 11.60 11.60 44.65 4.24
106 121 4.797471 TCTCGAATGAAAACATTTGCCAG 58.203 39.130 0.00 0.00 0.00 4.85
119 134 4.509230 GCATCAATAGCAGTTCTCGAATGA 59.491 41.667 0.00 0.00 0.00 2.57
143 158 4.794278 ACATGAAATCTTGCAATGCAGA 57.206 36.364 8.31 8.82 40.61 4.26
224 554 5.500645 AAGCAAAACAGTAAGGACTTCAC 57.499 39.130 0.00 0.00 31.73 3.18
236 566 5.747565 TCAGTAACATCGAAAGCAAAACAG 58.252 37.500 0.00 0.00 0.00 3.16
242 572 5.063438 GCATAACTCAGTAACATCGAAAGCA 59.937 40.000 0.00 0.00 0.00 3.91
243 573 5.493735 GCATAACTCAGTAACATCGAAAGC 58.506 41.667 0.00 0.00 0.00 3.51
248 578 3.242944 CACGGCATAACTCAGTAACATCG 59.757 47.826 0.00 0.00 0.00 3.84
250 580 4.202245 ACACGGCATAACTCAGTAACAT 57.798 40.909 0.00 0.00 0.00 2.71
256 586 2.967362 TGGTAACACGGCATAACTCAG 58.033 47.619 0.00 0.00 46.17 3.35
269 599 3.732010 AGCGTGATGGCTAGTGGTAACA 61.732 50.000 0.00 0.00 43.98 2.41
287 620 4.034858 TCGTGTACAACCTCTTAGATAGCG 59.965 45.833 0.00 0.00 0.00 4.26
289 622 7.974501 ACATTTCGTGTACAACCTCTTAGATAG 59.025 37.037 0.00 0.00 39.91 2.08
291 624 6.698380 ACATTTCGTGTACAACCTCTTAGAT 58.302 36.000 0.00 0.00 39.91 1.98
295 628 5.694910 CACTACATTTCGTGTACAACCTCTT 59.305 40.000 0.00 0.00 42.29 2.85
325 666 9.203163 TGGTTGAAAAGGGAAGACTTAAAAATA 57.797 29.630 0.00 0.00 0.00 1.40
331 672 4.583073 GCTTGGTTGAAAAGGGAAGACTTA 59.417 41.667 0.00 0.00 0.00 2.24
339 680 0.598065 CCTCGCTTGGTTGAAAAGGG 59.402 55.000 0.00 0.00 38.55 3.95
354 695 2.158900 ACTAACTTGGGCATCATCCTCG 60.159 50.000 0.00 0.00 0.00 4.63
357 698 4.516698 CACATACTAACTTGGGCATCATCC 59.483 45.833 0.00 0.00 0.00 3.51
362 703 4.316025 AACCACATACTAACTTGGGCAT 57.684 40.909 0.00 0.00 33.00 4.40
363 704 3.799432 AACCACATACTAACTTGGGCA 57.201 42.857 0.00 0.00 33.00 5.36
364 705 5.005094 TGTTAACCACATACTAACTTGGGC 58.995 41.667 2.48 0.00 33.00 5.36
365 706 6.148811 CACTGTTAACCACATACTAACTTGGG 59.851 42.308 2.48 0.00 33.76 4.12
374 715 6.482308 AGACTTCAACACTGTTAACCACATAC 59.518 38.462 2.48 0.00 33.76 2.39
375 716 6.588204 AGACTTCAACACTGTTAACCACATA 58.412 36.000 2.48 0.00 33.76 2.29
376 717 5.437060 AGACTTCAACACTGTTAACCACAT 58.563 37.500 2.48 0.00 33.76 3.21
382 723 4.569162 CGTGGAAGACTTCAACACTGTTAA 59.431 41.667 20.34 0.00 32.99 2.01
389 730 3.254470 TGAACGTGGAAGACTTCAACA 57.746 42.857 20.34 6.77 32.99 3.33
391 732 3.621268 CAGTTGAACGTGGAAGACTTCAA 59.379 43.478 16.85 2.45 33.24 2.69
404 745 5.460646 ACCATTTTAGCATTCAGTTGAACG 58.539 37.500 0.00 0.00 36.80 3.95
432 773 5.985530 TCAGATACAGTTAGCCATTTCATCG 59.014 40.000 0.00 0.00 0.00 3.84
440 781 4.030216 TCATGGTCAGATACAGTTAGCCA 58.970 43.478 0.00 0.00 0.00 4.75
453 794 3.729966 CATGAGATGGAGTCATGGTCAG 58.270 50.000 5.35 0.00 45.14 3.51
486 827 2.109425 AACCACAAGGCCGACTATTC 57.891 50.000 0.00 0.00 39.06 1.75
523 864 4.653801 AGGTTAAGGGCACAACTGAAATTT 59.346 37.500 0.00 0.00 0.00 1.82
525 866 3.573967 CAGGTTAAGGGCACAACTGAAAT 59.426 43.478 0.00 0.00 0.00 2.17
587 929 2.554032 GTTGACATGGAGAAACCCACAG 59.446 50.000 0.00 0.00 39.34 3.66
610 952 6.937465 AGGTGGTTAGAGAAAATTCAGAAGAC 59.063 38.462 0.00 0.00 0.00 3.01
793 1142 1.003839 TCAGCCCACAAACCTAGCG 60.004 57.895 0.00 0.00 0.00 4.26
803 1152 1.813178 GCCTACTTTTTCTCAGCCCAC 59.187 52.381 0.00 0.00 0.00 4.61
822 1171 6.064717 AGGGATAATCAGTTTTGGTGATAGC 58.935 40.000 0.00 0.00 33.34 2.97
883 1383 3.611766 ACACAATCTAAGGAGTTCCCG 57.388 47.619 0.00 0.00 40.87 5.14
939 1439 7.221450 ACCTAATGCAACACAAACTCTACTTA 58.779 34.615 0.00 0.00 0.00 2.24
947 1447 8.512138 AGATTACTAACCTAATGCAACACAAAC 58.488 33.333 0.00 0.00 0.00 2.93
956 1456 5.237344 CACTGGCAGATTACTAACCTAATGC 59.763 44.000 23.66 0.00 0.00 3.56
1350 1860 4.994852 TGAAATGTACCTTCACTTTCTCCG 59.005 41.667 3.92 0.00 0.00 4.63
1728 2238 0.321122 GAACTGTCAGGACCCTGCAG 60.321 60.000 25.09 25.09 45.08 4.41
1749 2259 3.066380 CACAACATCATCGTCAGAACCA 58.934 45.455 0.00 0.00 0.00 3.67
1885 2395 6.040278 TGTCAGCCAGATGTAACAAATTTCAA 59.960 34.615 0.00 0.00 0.00 2.69
1911 2421 5.980715 GGTTACATTTGTTCCAACATCGTTT 59.019 36.000 0.00 0.00 38.95 3.60
1941 2451 4.354893 AACATTGGGTCAAACATGCATT 57.645 36.364 0.00 0.00 0.00 3.56
1994 2505 7.801716 TGATAGGGTAATTTTGTAGCATGTC 57.198 36.000 0.00 0.00 0.00 3.06
2020 2531 7.072177 TGAACACTTCACACTTGAACTAAAG 57.928 36.000 0.00 0.00 36.79 1.85
2028 2539 3.976793 AGCATGAACACTTCACACTTG 57.023 42.857 0.00 0.00 43.48 3.16
2247 2761 0.543883 TCTGCTTGCAGGAGTCCTCT 60.544 55.000 20.62 0.00 35.01 3.69
2520 3034 8.863049 GCATTACATGACACAGAATTTTAAAGG 58.137 33.333 0.00 0.00 0.00 3.11
2533 3047 4.437930 GCAGAAAGGAGCATTACATGACAC 60.438 45.833 0.00 0.00 0.00 3.67
2549 3063 5.059833 ACCAACTAGAAAGTCTGCAGAAAG 58.940 41.667 20.19 11.27 33.75 2.62
2563 3077 4.690748 CAGCAAAAAGATCGACCAACTAGA 59.309 41.667 0.00 0.00 0.00 2.43
2643 3159 8.276325 CGGTACTTCTTTAACTGCATGATATTC 58.724 37.037 0.00 0.00 0.00 1.75
2712 3228 3.059325 CGCTCCTTCAAGAAACTCAAGTG 60.059 47.826 0.00 0.00 0.00 3.16
2714 3230 2.481952 CCGCTCCTTCAAGAAACTCAAG 59.518 50.000 0.00 0.00 0.00 3.02
2715 3231 2.104111 TCCGCTCCTTCAAGAAACTCAA 59.896 45.455 0.00 0.00 0.00 3.02
2717 3233 2.457366 TCCGCTCCTTCAAGAAACTC 57.543 50.000 0.00 0.00 0.00 3.01
2738 3254 3.865745 CAGTAACGATCTAGGCCAAACAG 59.134 47.826 5.01 0.00 0.00 3.16
2742 3258 1.138266 GCCAGTAACGATCTAGGCCAA 59.862 52.381 5.01 0.00 36.17 4.52
2745 3261 1.409427 ACTGCCAGTAACGATCTAGGC 59.591 52.381 0.00 0.00 42.32 3.93
2749 3265 0.608130 TGCACTGCCAGTAACGATCT 59.392 50.000 0.00 0.00 0.00 2.75
2758 3274 3.738246 CAGCTGCTGCACTGCCAG 61.738 66.667 17.73 0.80 43.85 4.85
2785 3301 3.643199 AACCAAAAACAAATGCCCACT 57.357 38.095 0.00 0.00 0.00 4.00
2820 3337 2.035066 GGGGCAATTTCCAGATGAATCG 59.965 50.000 0.00 0.00 31.67 3.34
2830 3347 3.070015 CCAGTATGAATGGGGCAATTTCC 59.930 47.826 0.00 0.00 39.69 3.13
2865 3382 5.182001 CAGAAAGCTTTGCCAGTACTATGTT 59.818 40.000 18.30 0.00 0.00 2.71
2866 3383 4.697352 CAGAAAGCTTTGCCAGTACTATGT 59.303 41.667 18.30 0.00 0.00 2.29
2867 3384 4.937620 TCAGAAAGCTTTGCCAGTACTATG 59.062 41.667 18.30 0.00 0.00 2.23
2868 3385 5.165961 TCAGAAAGCTTTGCCAGTACTAT 57.834 39.130 18.30 0.00 0.00 2.12
2869 3386 4.617253 TCAGAAAGCTTTGCCAGTACTA 57.383 40.909 18.30 0.00 0.00 1.82
2870 3387 3.492102 TCAGAAAGCTTTGCCAGTACT 57.508 42.857 18.30 2.17 0.00 2.73
2871 3388 4.773323 AATCAGAAAGCTTTGCCAGTAC 57.227 40.909 18.30 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.