>input_sequence_65709
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---------------------------------------------------------------------ATGTGCTTCCT
TTCTTGCTTGCACGTTTGTCAGTTCTTAAGCATGTCCATCGTACATGTCTGTGTGCAGTTACTGTTTGGTGCTACTGCCG
GGAAAGAAACTGTTTCAAGGGCACGTGCACAGTCGCACTCGTCCTTCAGTGATTCCTTCAATGTATCTCAAGAGAGGATA
GTGATAACGAACAGTTCTGGAGAGAAACTCATTGGTGTTTTGCACGAAGCTGGATCTAAGGACATTGTAGTGTTATGCCA
TGGGTTTAGGTCATCAAAGGAAAGTAGAACCATAATGGGTCTTACTGATGCATTAACATCAGAGAAGATTAGTGTATTTC
AGTTTGATTTTTCTGGCAACGGAGAAAGTGAAGGTACATTTCAGTATGGCAACTACTATAAAGAGGTGGATGACTTGCAT
GCTGTAATCCAGCATTTTAAGGAACACAAGCGTGATACTCGTGCTATTGCTGGCCACAGTAAGGGAGGAGATGTGGTCAT
CATCTATGCGTCCATGTATCAAGATGTATCTCGTGTTATCAACATATCGGGCAGATTTGATCTGAAACGTGGAATTGCAG
ATCGTCTTGGCAGTGACTATATGGAAAGGATAAATCAACATGGTTTCATTGACGTGGCACAGAAAACAGGACAGTTCATG
TACCGTGTAACCAAAGAAAGTCTGATGGACCGTCTTAGGATAGATATGCAAAGTGCATGCATGTCTATTGGCCCTAACTG
CAGGGTCCTGACAGTTCATGGTTCTGACGATGATGTTGTGCCATCGGAGGATGCTCTGGAATTTCATAAATATATAGGCA
ACCACGAAGTGCATATTATTGAAGGAGCTGATCATAGATATTCATCTCATCGGCTTGAGTTGGCTAACATTGTATTGAAA
TTTGTTACATCTGGCTGA--------------------------------------------------------------
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>chr4D_1_TraesCS4D01G263400
GCCCGTGGTT---TTTCAGGTTGGTGAGGGGTCGGGAATTCCGATGCCGTCGTCGATTGGGGAGGATGGGGAGGAGGTAC
CTTATCCACCAGCTTAAACCTTT----------A-TTATGCTGGCAAATGTTTTCATTCGAGAACTGCTATTGATGCT-C
TGCATTGCAAGATTTCATGTT-----------------------------------------------------------
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---------------AAATGTTGCTGGTGTGAGTGTGTTTTGGATGTGGGACTGCTGTGTCACCTTAGATAACGTGAAGT
CCTTACTGTTTTGCTTTCGATGTTACTGAGTTATGCCGTGTTAC---CACTAGCCATCACGCTATCTAAGAGGTTGTACA
CGAAAT--------GTAGTGATGTATATTTTTAAGTCTTCCCTTTTCAACCAAGCGAGGATGATGCCCAAGTTAGTATGT
GGTTAACAGTGTTGAAGTCTTCCACGTTCAACTGAATGCTAAAATGGTCTCTCGATGAAATGGCTAACTGTATCTGACCA
TGACTCCATCTCATGTATCTTTCTTAGAATAGTCGGCCTTGTGGTTTCGAAGCTTAGTTTAAAAAAT-TTCAGTTGTGCC
CTTAACCTGTCTATCACCGTTCTTGTTGAACACCTTGTTCTCTCACTCCTGTGGGTTTCTCCATGTCAACGGTCTTCTGA
ATTTTCTCTAACCACCTGTCTTAAATTCTCAAATGGTTTCCCATTCTTTTTATTATCTTCTGCTATATATTTGCTCAACC
ATTATTCGTGCATAG-----ATGCAAAGATTTTATAACACC--AACAGCATCATTCTTTCTGCGGTTAGCTCTTATTGCC
TTTTCTTTCTTGGGACTGATTCGCTAGGTTTGTGGGCTGAGAAAAAGTAGGCTATCACCAAAACTGAT------------
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-----------------------------------------------------------TATCCCTCTTAGGAATAATCT
ATGGATGGTTGCTTATCTTTTGCGGGAACTCCTTAGATTGTGTTCTAACTGCTGACTTCTAATATTGTTGGTGTTGGTTA
AGTAGAGTTTGTGTTGCATTAGGT----------TAGTAATCTGCCAGTGATTACTACTGCCTAACATTATGTGCTTCCT
TTCTTGCTTGCACGTTTGTCAGTTCTTAAGCATGTCCATCGTACATGTCTGTGTGCAGTTACTGTTTGGTGCTACTGCCG
GGAAAGAAACTGTTTCAAGGGCACGTGCACAGTCGCACTCGTCCTTCAGTGATTCCTTCAATGTATCTCAAGAGAGGATA
GTGATAACGAACAGTTCTGGAGAGAAACTCATTGGTGTTTTGCACGAAGCTGGATCTAAGGACATTGTAGTGTTATGCCA
TGGGTTTAGGTCATCAAAGGAAAGTAGAACCATAATGGGTCTTACTGATGCATTAACATCAGAGAAGATTAGTGTATTTC
AGTTTGATTTTTCTGGCAACGGAGAAAGTGAAGGTACATTTCAGTATGGCAACTACTATAAAGAGGTGGATGACTTGCAT
GCTGTAATCCAGCATTTTAAGGAACACAAGCGTGATACTCGTGCTATTGCTGGCCACAGTAAGGGAGGAGATGTGGTCAT
CATCTATGCGTCCATGTATCAAGATGTATCTCGTGTTATCAACATATCGGGCAGATTTGATCTGAAACGTGGAATTGCAG
ATCGTCTTGGCAGTGACTATATGGAAAGGATAAATCAACATGGTTTCATTGACGTGGCACAGAAAACAGGACAGTTCATG
TACCGTGTAACCAAAGAAAGTCTGATGGACCGTCTTAGGATAGATATGCAAAGTGCATGCATGTCTATTGGCCCTAACTG
CAGGGTCCTGACAGTTCATGGTTCTGACGATGATGTTGTGCCATCGGAGGATGCTCTGGAATTTCATAAATATATAGGCA
ACCACGAAGTGCATATTATTGAAGGAGCTGATCATAGATATTCATCTCATCGGCTTGAGTTGGCTAACATTGTATTGAAA
TTTGTTACATCTGGCTGACAAAACGATGTTGGAACAAATGTAACCATGACAATGCATGTTTGACCCAATG-TTTTGTGAT
TGGCGTTGCCATCAATTTCTTTCCGACATGCTACAAAATTACCCTATCAACTTTAGTTCAAGTGTGAAGTGTTCATGCTT
CTGGCACTGTTGATTGTATTTCCATCATACCTTAGTCAACTGCATATTTTCATTTGGTGTTTCTGTTTCATTGGGT--AC
CTGCAGAAGTTGCTGTTCTCTGTAGAACTAACACTATT-GGGTATCACTATTTTCTGCTTGCAGCTGGCACCCAAGCAGA
AGATCAGAATCAAGCTGAGGTCTTACTGGGTGCCATTGATAGAGGACTCCTGCAAGCAGATCATTGAAGCTGCAAAGACA
ACTAATGCCAAGACCATGGGTCCTGTTCCTCTGCCAACCAAGAAGAGAATATACTGTGTGCTCAACTCTCCCCATGTGCA
CAAAGATTCAAGGTTCCACTTTGAGATCCGGACACACCAGCGGTTGATTGATATCATGTACCCGACCGCCCAGACGATCG
ACTCATTGATGCAGCTCCAGCTCCCCGCCGGGGTGGATGTCGAGGTTAAGCTATGATCCCACTAGAGCTGAACCCTTTAA
AATTCTGTGTCATGTAATGCTCCTTTCTGCAGACTTTCTAGTTGGTCGATC--TTTTTGCTGTCTGAGACTTGAAACATA
TGTAGAGCCTGTAACACGAAAAAACATGTTCAGATATGGAATATCATGCAGTTAAAGAAGTACCGAGCAAATGTTATTTG
CATTGTGCTATGTTGATGTCTTGTTTACACTTGAGTTTCTTGAAGGAGCGGAACTGTTTGGCCTAGATCGTTACTGGCAG
TGCAGCAGCTGCAAATTGTCAGTGGGCATTTGTTTTT-GGTTTCCTGTCCCAGAACCGATTCATCTGGAAATTGCCCCAT
TCATACTGGTTGCACTGATTCAACATAG------------TACTGGCAAAGCTTTCTGATTTCTCCTGAAAATAGTA
>chr4B_1
GCCCGTGGTTTCATTTCAGGTTGGGGAGGGGTCGGGAATTCCGATGCCGTCGTCGATTGGGGAGGATGGGGAGGAGGTAC
CTTATCCACGAGCTTAAACCTTTCATGGTTATTA-TTATGTTGGCAAATGTTTCCATTGGAGAACTGTTATTGATGCGAT
TA-------------CATGTTAGCACATTGCCTCCATGTCTCGTGATTGCTGCATAC-TTGCATACAACCATGTCAAATG
AAAAATGGTGA---------------------------------------------------------------------
---------------------------------------------------------TAAGCATGGTGACTAGTGGTATT
ATGCGGTGTAAAATTCTTCACGGGTTCTTGGTTAGAAAAATGGTGACTGCATTTAAGTCGGTGCACCTTAAGCATTTGAC
TTGTAAATTGTAATAAAATGTTGCTGGTGTGAGTGTGTTTTGGATGTGGGAATGCTGTGTCACCTTAGATAACATGAAGT
CCTTAGTGTTTCACTTTGGCTGTTAATGAGTTATGCCGAGTTACTACCACTAGCCATCATGTTGTCTGAGAGGTTGCACA
TGAAATATTGAAATGTGGTGATATACATTTTGAAGTCTTGCCTTTTCAACCAAGTGATGATGTCATCCAAGTTATG-TGT
GGGTAACAGCGGCGAAGTGTTTCAT-------------------------------------------------------
------------------------------------------------------------------------GTTGTGCC
CTTTACCTGTCTATATCCGTTCTTGTTGAACACTTTCTCCTCTCACTCTTGTA-GTTTCTCCATGTCGACATTCTTCTAA
ATTCTTCTCTA-------------------------------------------ATCTTCTGTTCTATATTTGCCCAGCC
ATTATTATTGCATATAATATATACAAATATTTTGTAACGATATATCAGCATTATCCTTTCTGTGATTAGCTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCCTTTTAGGAATAATCT
AGGGATGGTCGCTTCTCTTTTGTGGGAACTCCTTAGATTGTGTTCTAACTGCTGACTTCTAATATTGTTCGTGTTGGTCA
AGTAGATTTTGTGTTACATTAGGTTAGTACTTGATAGTAATCTGCCAGTGATTACTC---CCTAACATTATGTGCTTCCT
TTCTTGCTT-CACGTTTGTTATTTGTTAAGCATGTCCATCGTGCATGTCTGTGTGCAGTTGCTGTTTGGTGCTACTGCCG
GGAAAGAAACTGTTCCAAGGGCACGTGCACAGTTGCACTCCTCCTTCAGTGATTCCTTTGATGTATCTCAAGAGAGGATA
GTGATAACGAACAGTTCTGGAGAGAAACTCATTGGTGTTTTGCACGAAGCTGGATCTAAGGACATTGTAGTGTTATGCCA
TGGGTTTAGGTCATCAAAGGAAAGTAGAACCATAATGGGTCTTACTGATGCATTAACATCAGAGAAGATTAGTGTATTTC
GGTTTGATTTTTCTGGCAATGGAGAAAGTGAAAGTACATTTCAGTATGGCAACTACTACAAAGAGGTGGATGATTTGCAT
AGTGTAATCCAGCATTTTAAGGAACACAAGCGTGATACTCGTGCTATTGCTGGCCACAGTAAGGGAGGAGATGTGGTCAT
CATCTATGGGTCCATGTATCAAGATGTATCTCGTATTATCAACATATCGGGCAGATTTGATCTGAAACGTGGAATTGCAG
ATCGTCTTGGCAGTGACTATATGGAAAGGATAAATCAACATGGTTTCATTGACGTGGCACAGAAGACAGGACAGTTCATG
TACCGTGTAACCAAAGAAAGTCTGATGGATCGTCTTAGGATAGATATGCAAAGTGCATGCATGTCTATTGACCCTAATTG
CAGGGTCCTGACAGTTCACGGTTCTGAAGATGATGTTGTGCCATCGGAGGATGCTCTGGAATTTCATAAATATATAGGCA
ACCATGAATTGCATATTATTGAGGGAGCTGATCATAGATATTCATCTCATCAGCTTGAGTTGGCTAACATTGTAATGAAA
TTTGTTACATCTGGCTGAAAGAATGATGTTGGAACAAATGTAACCATGATGATGCATGTTTGACCCAATGTTTTTGTGAT
TGGCGTTGCCATCAATTTCTTTCCAACATGTTACAAAATTACCCTGTCAAATTTAGTTGAGGTGTGAAGTGTTCATGCTT
CTGGCACAGTTGATTGTATTTCCATCATACCTTAGTCAACTGCATTTAAA--------------GTTTCATTGA-GTCAC
TTGCAGAAGTTGCTGTTCTCTGTAGAACTAACACCATT-GG-TATCACTATTGTTTGTTTGCAGCTGGCACCCAAACAGA
AGATCAGAATCAAGCTGAGGTCTTACTGGGTGCCATTGATCGAGGACTCCTGCAAGCAGATCATTGAAGCTGCAAAAACA
ACTAATGCCAAGACCATGGGTCCTGTTCCTCTGCCGACCAAGAAGAGAATATACTGTGTGCTCAACTCTCCCCACGTGCA
CAAAGATTCAAGGTTCCACTTTGAGATCCGGACACACCAGCGGTTGATTGATATCATGTACCCGACCGCCCAGACGATTG
ACTCGTTGATGCAGCTCCAGCTTCCCGCGGGGGTGGATGTCGAGGTTAAGCTATGATCCCACTAGAGCTGAACTCTTTAA
AATTCTATGTCATGTAATGCTCTTTTCTGCAGACTTCCTAGTTGGTCGATC--TTTTTGCTGTCTGAGACTTGAAACATA
TGTAGAGCCTGTAACACGAAAAAACATGTTCAGATATGAAATATCATGCAGTTAAAGAAGTACCGAGCGAG-GTTATTTG
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>chr4A_4
CGTT---GTT---TTTCAGGTTGGTGAGGGGTCGGGAATTCCGATGCCGTCGTCGATTGGGGAGGATGGGGAGGAGGTAC
CTTATCCACGAGCTTAAACTTTTTCATCATGGTTGTTATGTTGGCAAATGTTTCCATTCACGAGCTGTTATTGATGTGAC
TGCATTGCAAGATTTCATGTTCACGCATTGCCTCCTTGTCTTGTGACTGCTGCATACTTTGCATATAACCATGTCAAATG
AAATGGGTGTGTTGATAAGCTGAGCTAAAAATTGATAGTAAGCATACAACGTACTCCCTCTGTAAATTAATATAAGAGCG
TTTAGATTACTAAAGTAGTGATCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTAAGCATAGTGACTAGTGACATT
ATGTGGGGTAAAGTTCTTCGTGGGTTCTTGGTTAGCGCA------------------------CACATTGAGCATTTGAC
TCGTGAT--------AAATGTTGCTGGTGTGACTCTGTTTTGGACGTGGGACTGCTGG----------------------
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------------TGAAGTCTTCCATGTTCAACTGAATGCTAAAATGGTCTCTGGATGAAAAGGCTAACTGTATTTAACCA
TGACTCCATCTCATGTATCTTTCTTAAAATAGTCGGCCTTGTGGTTTCGAAGCTTAGTTTAAATATTCTTCAGTTGTGCC
CTTAACCTGTCTATCACCGCTCTTGTTGAACACCTTGTTCTCTCACTCTTGTGGGTTTCTCCATGTCAATGATCTTCTGA
ATTTTCTCTAACCACCTGCCTTAAATTCTCAAATGGTTTCCCATTCTTTTTATTATCTTCTGCTATATATTTGCTCAACC
ATTATTCGTGCATAG-----ATGCAAAGATTTTATAACACC--AACAGCATCATTCTCTCTGCGGTTAGCTCTTATTGCC
TTTTCTTTCTTGGGACTGATTTGCTAGGTTTATGGGCTGAGAAAAAGTAGTCTATCACCAAAACTGAT------------
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-----------------------------------------------------------TATCCCTCTCAGGAATAATCT
ATGGATGGTTGCTTATCTTTTGTGGGAACTCCTTAGATTGTGTTCTAACTGCTGACTTCTAATATTGTTGGTGTTGGTGA
AGTAGATTTTGTGTTACATTTGGT----------TAGTAATCTGCCAGTGATTACTACTGCCTAACATTATGTGCTTCCT
TTCTTGCTTGCACGTTTGTCAGTTCTTAAGCATGTCCATCGTACATGTCTGCGTGCAGTTACTGTTTGGTGCTACTGCCG
GGAAAGAAACTGTTTCAAGGGCACGTGCGCAGTCGCACTCGTCCTTCAGTGATTCCTTCAATGTATCTCAAGAGAGGATA
GTGATAACCAACAGTTCTGGAGAGAAACTCATTGGTGTTTTGCACGAAGCTGGATCTAAGGACATTGTAGTGTTATGCCA
TGGGTTTAGGTCATCAAAGGAAAGTAGAACCATAATGGGTCTTACTGATGCATTAACATCAGAGAAGATTAGTGTATTTC
AGTTTGATTTTTCTGGCAATGGAGAAAGTGAAGGTACATTTCAGTATGGCAACTACTATAAAGAGGTGGATGATTTGCAT
AATGTAATCCAGCATTTTAAGGAACACAAGCGTGATACTCGTGCTATTGCTGGCCACAGTAAGGGAGGAGATGTGGTCAT
CATCTATGCGTCCATGTATCAAGATGTATCTCGTGTAATCAACATATCGGGCAGATTTGATCTGAAACGTGGAATTGCAG
ATCGTCTTGGCGGTGACTATATGGAAAGGATAAATCAACATGGTTTCATTGACGTGGCACAGAAAACAGGACAGTTCATG
TACCGTGTAACCAAAGAAAGTCTGATGGACCGTCTTAGCATAGATATGCAAAGTGCATGCATGTCTATTGACCCTAATTG
CAGGGTCCTGACAGTTCACGGTTCTGACGATGATGTTGTGCCATCAGAGGATGCTCTGGAATTTCATAAATATATAGGCA
ACCACGAAGTGCATATTATTGAAGGAGCTGATCATAGATATTCATCTCATCGGCTTGAGCTGGCTAACATTGTAATGAAA
TTTGTTACATCTGTCTGACAGAACGATGTTGGAACAAATGTAACCATGACGATGCATGTTTGACCAAATG-TTTTTGTG-
-------------------------------------ATTGCCCTATCAAATTTAGTTGAAGTGCGAAGTTTTCATGCTT
CTGGCACTATTGGCTGTATTTCCATCATACCTTAGTCAACTGCATATTTTCATTTGGTGTTTCTGTTTCATTGGGGTCAC
CTGCAGAAGTTGCTGTTCTCTGTAGAACTAACACTATTGGG-TATCAACATTTTATGTTTGCAGCTGGCACCTAAGCAGA
AGATCAGAATCAAGCTGAGGTCTTACTGGGTGCCATTGATCGAGGACTCCTGCAAGCAGATCATCGAAGCTGCAAAGACA
ACTAATGCCAAGACCATGGGTCCTGTTCCTCTGCCAACCAAGAAGAGAATATACTGTGTGCTCAACTCTCCCCATGTGCA
CAAAGATTCAAGGTTCCACTTCGAGATCCGGACACACCAGCGGTTGATTGATATCATGTACCCGACTGCCCAGACAATCG
ATTCATTGATGCAGCTCCAGCTCCCCGCCGGGGTGGATGTTGAGGTTAAGCTATGATCCCACTAGAGCTGAACTCTTTAA
AATTCTATGTCATGTTATGCTCTTTTCTGCAGGCTTCCTAGTTGACCGATCTTTTTTTGCTGTCTGAGACTTGAAACATA
TGTAGAGCCTGTAACACGGAAAAACATGTTCAGATATGAAATATCATGCAGTTAAAGAAGTATCGAGCAAG-GTTATTTG
CATTGTGCTATGTTGATGTCTTGTTTAAATCTAAGTTTCTTGAAGGAGCGGAATTGTCTGACCTTGATCGTTAGTAACAG
TGCAGCAGCTGCAAATTGTCGGTGGGCATTTGTTTTTTGGTTTCCTGTCCCAGAACAGATTCATCTAGAAATTGCCCCAT
TCATACTGGTTGCACTGATTCTTGCGCTGATTCAACATACTACTGGCAAAGCTTTCTGATTTCTCCTGAAAATAGTA
>SNPs
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---------S------------------------------S------------S-------------S---------S--
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-------------------------------------------------------------------------S------
-----S-----SS----S-S-----S------------S--------------------S-S-S---S--------S---
S---------------S-----S--S-----S-------S--------------S--S----SSSS--------SSS---
--S------S-S------------S---------------------------S-------S------------S-S----
--------------------------S------------------------------------S-S--------------
------------------------------------------------S----------------------S--------
------------------S-------------------------------------------------------------
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---------------------S---------S------------------S-----------------------------
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----------------------S-------------------------------------------------------S-
------S--------S----------------------------------------------------------------
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-------------------S-----------------------------------------------------S------
SS------------------------------------------------------------------------------
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----------------------------------------------------------------------S------S--
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------S-----------------------------S-----------------------------
------------------------S-----S-------------------S-------S---------------------
---------------------------------------------------------------------------S----
-----------------------------------------S------------S--S----------------------
----------------------------------------S---------------------------------------
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-------------------------------------------------------------------------S------
------S---------------S-------------S-------------------------------------------
--------------------------------------S-------------------------------SS--------
---------------------------S-SS-S--------------------S---S--S---S--------S-SS---
--------------------S-----------------------------------S---------S-------------
---------------------SSSSSSS-------------------------------------------------
>forward_706
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----------------------------------------------CAACCAAGCGAGGATGATGC--------------
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>reverse_2238
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-----------------------------------------------------------------------------CTG
CAGGGTCCTGACAGTTC---------------------------------------------------------------
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>forward_1922
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--------------------------------------------------------------GAGGTGGATGACTTGCAT
GC------------------------------------------------------------------------------
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>reverse_2761
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----------------------------------------AGAGGACTCCTGCAAGCAGA--------------------
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