Multiple sequence alignment - TraesCS4D01G257200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G257200 chr4D 100.000 3246 0 0 1 3246 426850977 426854222 0.000000e+00 5995.0
1 TraesCS4D01G257200 chr4D 85.294 68 8 2 1795 1862 427266527 427266592 5.810000e-08 69.4
2 TraesCS4D01G257200 chr4A 88.394 1818 127 38 848 2611 38696121 38694334 0.000000e+00 2111.0
3 TraesCS4D01G257200 chr4A 94.563 515 20 4 1 515 38696619 38696113 0.000000e+00 789.0
4 TraesCS4D01G257200 chr4A 92.529 348 21 4 2751 3097 38694337 38693994 8.090000e-136 494.0
5 TraesCS4D01G257200 chr4B 94.499 1327 45 15 603 1922 522522372 522523677 0.000000e+00 2021.0
6 TraesCS4D01G257200 chr4B 91.290 907 54 10 1973 2877 522532607 522533490 0.000000e+00 1214.0
7 TraesCS4D01G257200 chr4B 91.461 609 26 7 1 607 522521694 522522278 0.000000e+00 813.0
8 TraesCS4D01G257200 chr4B 90.691 376 30 4 2875 3246 522533593 522533967 2.250000e-136 496.0
9 TraesCS4D01G257200 chr4B 97.059 34 1 0 1795 1828 522675917 522675950 1.260000e-04 58.4
10 TraesCS4D01G257200 chr3D 91.270 1134 55 15 1973 3077 543766644 543765526 0.000000e+00 1506.0
11 TraesCS4D01G257200 chr3D 92.500 760 42 12 642 1395 543767499 543766749 0.000000e+00 1074.0
12 TraesCS4D01G257200 chr3A 89.100 1156 81 25 670 1810 680732395 680731270 0.000000e+00 1395.0
13 TraesCS4D01G257200 chr3A 89.953 637 33 6 2423 3058 680728560 680727954 0.000000e+00 793.0
14 TraesCS4D01G257200 chr3A 90.212 378 17 8 2036 2394 680728937 680728561 2.930000e-130 475.0
15 TraesCS4D01G257200 chr3A 78.534 191 29 5 3059 3239 680727531 680727343 7.360000e-22 115.0
16 TraesCS4D01G257200 chr3A 90.698 86 8 0 614 699 680732395 680732480 7.360000e-22 115.0
17 TraesCS4D01G257200 chr3B 87.603 1218 79 22 2060 3246 719420707 719419531 0.000000e+00 1347.0
18 TraesCS4D01G257200 chr3B 89.981 1028 74 20 642 1659 719422246 719421238 0.000000e+00 1301.0
19 TraesCS4D01G257200 chr3B 87.342 158 15 2 1658 1811 719421080 719420924 3.330000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G257200 chr4D 426850977 426854222 3245 False 5995.000000 5995 100.000000 1 3246 1 chr4D.!!$F1 3245
1 TraesCS4D01G257200 chr4A 38693994 38696619 2625 True 1131.333333 2111 91.828667 1 3097 3 chr4A.!!$R1 3096
2 TraesCS4D01G257200 chr4B 522521694 522523677 1983 False 1417.000000 2021 92.980000 1 1922 2 chr4B.!!$F2 1921
3 TraesCS4D01G257200 chr4B 522532607 522533967 1360 False 855.000000 1214 90.990500 1973 3246 2 chr4B.!!$F3 1273
4 TraesCS4D01G257200 chr3D 543765526 543767499 1973 True 1290.000000 1506 91.885000 642 3077 2 chr3D.!!$R1 2435
5 TraesCS4D01G257200 chr3A 680727343 680732395 5052 True 694.500000 1395 86.949750 670 3239 4 chr3A.!!$R1 2569
6 TraesCS4D01G257200 chr3B 719419531 719422246 2715 True 941.333333 1347 88.308667 642 3246 3 chr3B.!!$R1 2604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 1.476488 GTGCCAGGTTTGTTGTGTCTT 59.524 47.619 0.0 0.0 0.0 3.01 F
1933 2288 0.113385 TCAATCCTCCCCCGCAAAAA 59.887 50.000 0.0 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2304 3.374764 ACACAGGTATGAGCACATAGGA 58.625 45.455 3.9 0.0 39.29 2.94 R
3223 6271 0.687757 TCCCCCAGGTCATCTTCTCG 60.688 60.000 0.0 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 159 1.476488 GTGCCAGGTTTGTTGTGTCTT 59.524 47.619 0.00 0.00 0.00 3.01
161 162 2.223572 GCCAGGTTTGTTGTGTCTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
162 163 3.016736 CCAGGTTTGTTGTGTCTTCTGT 58.983 45.455 0.00 0.00 0.00 3.41
163 164 3.065371 CCAGGTTTGTTGTGTCTTCTGTC 59.935 47.826 0.00 0.00 0.00 3.51
164 165 3.941483 CAGGTTTGTTGTGTCTTCTGTCT 59.059 43.478 0.00 0.00 0.00 3.41
165 166 4.034510 CAGGTTTGTTGTGTCTTCTGTCTC 59.965 45.833 0.00 0.00 0.00 3.36
314 317 4.451096 TGACCACTTGCTAATCGAAAACTC 59.549 41.667 0.00 0.00 0.00 3.01
330 333 6.024049 CGAAAACTCCATCTTCTTTGCATAC 58.976 40.000 0.00 0.00 0.00 2.39
502 505 4.464069 AAACACAAGCCTTTAACAGCAA 57.536 36.364 0.00 0.00 0.00 3.91
533 536 1.799994 GAATTTTGCACATGGTGGCAC 59.200 47.619 9.70 9.70 40.23 5.01
543 546 3.507233 CACATGGTGGCACTTTGAACTAT 59.493 43.478 18.45 0.00 0.00 2.12
560 563 5.948758 TGAACTATGGGTATGTTTGAATGCA 59.051 36.000 0.00 0.00 0.00 3.96
596 599 5.429957 AAAACTTGCTCTCTGCTTGTTAG 57.570 39.130 0.00 0.00 43.37 2.34
612 713 5.575995 GCTTGTTAGGCACTTGTACTAGTAC 59.424 44.000 23.58 23.58 41.75 2.73
618 719 8.825745 GTTAGGCACTTGTACTAGTACTACTAG 58.174 40.741 28.56 21.60 46.31 2.57
699 801 6.415280 GCGTGGAATATATATCTCTACAAGCG 59.585 42.308 15.12 4.33 0.00 4.68
753 856 8.913487 ATATTGATGTATCACAAGCATGAGAA 57.087 30.769 0.00 0.00 36.36 2.87
844 948 9.470399 GATCCTCCCCTTTTAGTAAATTTACAA 57.530 33.333 26.06 16.48 36.12 2.41
993 1098 8.594550 AGAGGAGAAGCAGTATAAAGTTGTTTA 58.405 33.333 0.00 0.00 32.60 2.01
1061 1166 5.408604 ACATCTTGACTAACCTTTAGCAACG 59.591 40.000 0.00 0.00 0.00 4.10
1130 1237 2.409975 CAGGCATTTGGACAAGCAAAG 58.590 47.619 0.00 0.00 0.00 2.77
1207 1315 5.594725 CAGGTGAGCCTCAATACTACTAGAA 59.405 44.000 0.00 0.00 44.97 2.10
1248 1356 7.932491 GGAATCTCAGGGGTATTTCTTTAGTAC 59.068 40.741 0.00 0.00 0.00 2.73
1585 1708 5.877564 GCTGCTAAGACTTTCCTGTTATTCT 59.122 40.000 0.00 0.00 0.00 2.40
1768 2054 9.556030 GTAATTCTTAACTTGAATTGCTACCAC 57.444 33.333 10.73 0.00 42.12 4.16
1891 2246 6.053650 AGTAGCGTTTTTCTAGAAACCACTT 58.946 36.000 17.51 10.29 36.42 3.16
1925 2280 3.694043 GAGCTATTCTCAATCCTCCCC 57.306 52.381 0.00 0.00 41.51 4.81
1926 2281 2.304470 GAGCTATTCTCAATCCTCCCCC 59.696 54.545 0.00 0.00 41.51 5.40
1927 2282 1.002544 GCTATTCTCAATCCTCCCCCG 59.997 57.143 0.00 0.00 0.00 5.73
1928 2283 1.002544 CTATTCTCAATCCTCCCCCGC 59.997 57.143 0.00 0.00 0.00 6.13
1929 2284 0.988145 ATTCTCAATCCTCCCCCGCA 60.988 55.000 0.00 0.00 0.00 5.69
1930 2285 1.204786 TTCTCAATCCTCCCCCGCAA 61.205 55.000 0.00 0.00 0.00 4.85
1931 2286 1.204786 TCTCAATCCTCCCCCGCAAA 61.205 55.000 0.00 0.00 0.00 3.68
1932 2287 0.323360 CTCAATCCTCCCCCGCAAAA 60.323 55.000 0.00 0.00 0.00 2.44
1933 2288 0.113385 TCAATCCTCCCCCGCAAAAA 59.887 50.000 0.00 0.00 0.00 1.94
1959 4371 5.822132 AAGAGCTATCAATCCTATGTGCT 57.178 39.130 0.00 0.00 0.00 4.40
1965 4377 5.814705 GCTATCAATCCTATGTGCTCATACC 59.185 44.000 4.38 0.00 35.70 2.73
1966 4378 6.351711 GCTATCAATCCTATGTGCTCATACCT 60.352 42.308 4.38 0.00 35.70 3.08
1967 4379 5.219343 TCAATCCTATGTGCTCATACCTG 57.781 43.478 4.38 1.26 35.70 4.00
1968 4380 4.655649 TCAATCCTATGTGCTCATACCTGT 59.344 41.667 4.38 0.00 35.70 4.00
1969 4381 4.613925 ATCCTATGTGCTCATACCTGTG 57.386 45.455 4.38 0.00 35.70 3.66
1970 4382 3.374764 TCCTATGTGCTCATACCTGTGT 58.625 45.455 4.38 0.00 35.70 3.72
1971 4383 4.542697 TCCTATGTGCTCATACCTGTGTA 58.457 43.478 4.38 0.00 35.70 2.90
2236 4681 2.650322 AGCCAGGAAAACGAAGAACAA 58.350 42.857 0.00 0.00 0.00 2.83
2279 4724 7.095060 ACCGTGAATCTGCAATATATGATGTTC 60.095 37.037 0.00 0.00 0.00 3.18
2301 4763 0.107214 TGGGGATGCAACCGATCTTC 60.107 55.000 6.95 0.00 0.00 2.87
2394 4863 0.736053 TCCAAACTGCACAACGGAAC 59.264 50.000 0.00 0.00 0.00 3.62
2409 4878 2.280628 CGGAACCTTGAATCTGGCTAC 58.719 52.381 0.00 0.00 0.00 3.58
2435 4904 5.503634 TCTGTGAGGAATTTTGAGATGGA 57.496 39.130 0.00 0.00 0.00 3.41
2442 4912 6.658816 TGAGGAATTTTGAGATGGATTTCGAA 59.341 34.615 0.00 0.00 0.00 3.71
2504 4975 6.756299 TGCATGACTAGCACATGAATTTTA 57.244 33.333 24.94 8.29 45.22 1.52
2528 4999 9.725019 TTATGAATCTTGAATGTGACTACTGTT 57.275 29.630 0.00 0.00 0.00 3.16
2672 5150 2.534990 CTTTGGAAAACCTGGGGCATA 58.465 47.619 0.00 0.00 0.00 3.14
2805 5284 3.858868 TTGGAGCAGGCGACACGAC 62.859 63.158 0.00 0.00 33.59 4.34
2811 5299 2.016704 CAGGCGACACGACACTGAC 61.017 63.158 0.00 0.00 37.34 3.51
2812 5300 2.194212 AGGCGACACGACACTGACT 61.194 57.895 0.00 0.00 37.34 3.41
2813 5301 0.887836 AGGCGACACGACACTGACTA 60.888 55.000 0.00 0.00 37.34 2.59
2818 5306 2.159814 CGACACGACACTGACTACTCTC 60.160 54.545 0.00 0.00 0.00 3.20
2853 5341 2.583024 TGCATTCAGTGTCCATTGGA 57.417 45.000 0.00 0.00 0.00 3.53
2880 5368 3.574826 GGAACACAGTTCTCTGGTAGTCT 59.425 47.826 9.46 0.00 45.14 3.24
2881 5369 4.765856 GGAACACAGTTCTCTGGTAGTCTA 59.234 45.833 9.46 0.00 45.14 2.59
2883 5371 5.906113 ACACAGTTCTCTGGTAGTCTATG 57.094 43.478 0.47 0.00 45.14 2.23
2885 5373 4.158579 CACAGTTCTCTGGTAGTCTATGCA 59.841 45.833 0.00 0.00 45.14 3.96
2933 5537 5.665360 TCAGTGTATGGATGGAATTACCTGA 59.335 40.000 0.00 0.00 39.86 3.86
2963 5567 3.433274 TGTTAGCATTCTGACGAAGCAAG 59.567 43.478 0.00 0.00 32.04 4.01
2968 5572 3.120199 GCATTCTGACGAAGCAAGCTAAA 60.120 43.478 0.00 0.00 31.60 1.85
3038 5642 3.058224 GTCACAGCCACCATAACTTTGAC 60.058 47.826 0.00 0.00 34.92 3.18
3118 6144 2.025321 AGGAACAGTTGTGTGGGTTTCT 60.025 45.455 0.00 0.00 36.84 2.52
3140 6185 1.745653 TCAGACCTGCATCTACACTCG 59.254 52.381 0.00 0.00 0.00 4.18
3143 6188 1.683917 GACCTGCATCTACACTCGGAT 59.316 52.381 0.00 0.00 0.00 4.18
3146 6191 2.298446 CCTGCATCTACACTCGGATGAT 59.702 50.000 7.06 0.00 41.05 2.45
3188 6233 1.410517 TCTGATCTTGATCCAGCGACC 59.589 52.381 7.99 0.00 0.00 4.79
3201 6249 2.670148 GCGACCCCCTGTCATTCCT 61.670 63.158 0.00 0.00 44.71 3.36
3208 6256 1.614317 CCCCTGTCATTCCTGTGAACC 60.614 57.143 0.00 0.00 32.13 3.62
3209 6257 1.073763 CCCTGTCATTCCTGTGAACCA 59.926 52.381 0.00 0.00 32.13 3.67
3223 6271 6.546403 TCCTGTGAACCAGTATGTAGATAGTC 59.454 42.308 0.00 0.00 39.74 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 165 9.877222 TCACCAAGTATATTACAATAGGAGAGA 57.123 33.333 0.00 0.00 0.00 3.10
263 266 5.528320 GGCCAATAAAATTAGTGCCGTAGTA 59.472 40.000 0.00 0.00 0.00 1.82
264 267 4.337274 GGCCAATAAAATTAGTGCCGTAGT 59.663 41.667 0.00 0.00 0.00 2.73
265 268 4.336993 TGGCCAATAAAATTAGTGCCGTAG 59.663 41.667 0.61 0.00 31.96 3.51
314 317 6.446781 AACATGAGTATGCAAAGAAGATGG 57.553 37.500 0.00 0.00 37.85 3.51
330 333 4.592942 TGGGATTCAGGAGAAAACATGAG 58.407 43.478 0.00 0.00 37.29 2.90
471 474 4.766404 AGGCTTGTGTTTATAAGTGTGC 57.234 40.909 0.00 0.00 0.00 4.57
479 482 5.782893 TGCTGTTAAAGGCTTGTGTTTAT 57.217 34.783 0.00 0.00 0.00 1.40
502 505 2.299867 GTGCAAAATTCCTCCACACCAT 59.700 45.455 0.00 0.00 0.00 3.55
533 536 7.489113 GCATTCAAACATACCCATAGTTCAAAG 59.511 37.037 0.00 0.00 0.00 2.77
543 546 5.999205 AAGAATGCATTCAAACATACCCA 57.001 34.783 34.59 0.00 39.23 4.51
582 585 2.740981 CAAGTGCCTAACAAGCAGAGAG 59.259 50.000 0.00 0.00 41.87 3.20
586 589 3.403038 AGTACAAGTGCCTAACAAGCAG 58.597 45.455 0.00 0.00 41.87 4.24
589 592 6.921914 AGTACTAGTACAAGTGCCTAACAAG 58.078 40.000 29.87 0.00 38.48 3.16
612 713 7.043961 TGAATATCTCCACAGCAACTAGTAG 57.956 40.000 0.00 0.00 0.00 2.57
618 719 6.763135 TCAATACTGAATATCTCCACAGCAAC 59.237 38.462 0.00 0.00 34.25 4.17
844 948 3.323403 GCTAGAAGCTGTCCTCCACATAT 59.677 47.826 0.00 0.00 38.45 1.78
919 1023 3.570125 CCCCTCTTGACAGAAGAAAAACC 59.430 47.826 0.00 0.00 0.00 3.27
993 1098 5.954150 AGAATGCTTTGGTTCCATTATCACT 59.046 36.000 0.00 0.00 29.96 3.41
1061 1166 3.689649 ACTGAAATCGTTAGGGCACATTC 59.310 43.478 0.00 0.00 0.00 2.67
1130 1237 5.505654 CGGTATGTTTCCATTAAGGCATGAC 60.506 44.000 0.00 0.00 37.29 3.06
1490 1607 9.304731 TGAAGTTATCATTTATTTTCTGCATGC 57.695 29.630 11.82 11.82 31.50 4.06
1521 1643 8.115384 TCCTCCTAAAATCAAATTCCTCATTCA 58.885 33.333 0.00 0.00 0.00 2.57
1585 1708 7.502895 TGGAAACAAGTAGCTGTTACCATTTAA 59.497 33.333 0.00 0.00 38.59 1.52
1711 1997 5.924356 TCAGTTACATCACTTGAGGTTCAA 58.076 37.500 1.31 0.00 39.91 2.69
1717 2003 6.867550 TGTATCCTCAGTTACATCACTTGAG 58.132 40.000 0.00 0.00 0.00 3.02
1934 2289 7.059156 AGCACATAGGATTGATAGCTCTTTTT 58.941 34.615 0.00 0.00 0.00 1.94
1935 2290 6.599445 AGCACATAGGATTGATAGCTCTTTT 58.401 36.000 0.00 0.00 0.00 2.27
1936 2291 6.183361 TGAGCACATAGGATTGATAGCTCTTT 60.183 38.462 11.67 0.00 45.41 2.52
1937 2292 5.306419 TGAGCACATAGGATTGATAGCTCTT 59.694 40.000 11.67 0.00 45.41 2.85
1938 2293 4.837298 TGAGCACATAGGATTGATAGCTCT 59.163 41.667 11.67 0.00 45.41 4.09
1939 2294 5.144692 TGAGCACATAGGATTGATAGCTC 57.855 43.478 0.00 0.00 45.40 4.09
1940 2295 5.758790 ATGAGCACATAGGATTGATAGCT 57.241 39.130 0.00 0.00 34.71 3.32
1941 2296 5.814705 GGTATGAGCACATAGGATTGATAGC 59.185 44.000 3.90 0.00 39.29 2.97
1942 2297 7.040494 CAGGTATGAGCACATAGGATTGATAG 58.960 42.308 3.90 0.00 39.29 2.08
1943 2298 6.498303 ACAGGTATGAGCACATAGGATTGATA 59.502 38.462 3.90 0.00 39.29 2.15
1944 2299 5.309020 ACAGGTATGAGCACATAGGATTGAT 59.691 40.000 3.90 0.00 39.29 2.57
1945 2300 4.655649 ACAGGTATGAGCACATAGGATTGA 59.344 41.667 3.90 0.00 39.29 2.57
1946 2301 4.753610 CACAGGTATGAGCACATAGGATTG 59.246 45.833 3.90 3.96 39.29 2.67
1947 2302 4.410228 ACACAGGTATGAGCACATAGGATT 59.590 41.667 3.90 0.00 39.29 3.01
1948 2303 3.969976 ACACAGGTATGAGCACATAGGAT 59.030 43.478 3.90 0.00 39.29 3.24
1949 2304 3.374764 ACACAGGTATGAGCACATAGGA 58.625 45.455 3.90 0.00 39.29 2.94
2058 4503 9.221933 TGGACTAAATAAGCGTTTCTTTTATGA 57.778 29.630 0.98 0.00 36.25 2.15
2196 4641 1.371467 TGATTCCCCTGCTTTCTCCA 58.629 50.000 0.00 0.00 0.00 3.86
2236 4681 6.045072 TCACGGTTAACATTCTATGGTTCT 57.955 37.500 8.10 0.00 33.60 3.01
2279 4724 1.152694 ATCGGTTGCATCCCCATGG 60.153 57.895 4.14 4.14 0.00 3.66
2394 4863 3.937706 CAGAACAGTAGCCAGATTCAAGG 59.062 47.826 0.00 0.00 0.00 3.61
2409 4878 6.349115 CCATCTCAAAATTCCTCACAGAACAG 60.349 42.308 0.00 0.00 0.00 3.16
2435 4904 6.017357 GTCTAGGAACAAACAAGGTTCGAAAT 60.017 38.462 0.00 0.00 44.29 2.17
2442 4912 2.104281 AGCGTCTAGGAACAAACAAGGT 59.896 45.455 0.00 0.00 0.00 3.50
2504 4975 7.879677 TGAACAGTAGTCACATTCAAGATTCAT 59.120 33.333 0.00 0.00 32.27 2.57
2525 4996 4.214986 TCCTCACTGACAAGTTTGAACA 57.785 40.909 0.00 0.00 32.98 3.18
2528 4999 4.136796 CCATTCCTCACTGACAAGTTTGA 58.863 43.478 0.00 0.00 32.98 2.69
2672 5150 7.042797 ACTTCACAAAAATCATGTGCTAGTT 57.957 32.000 1.91 0.00 46.05 2.24
2785 5264 3.426568 GTGTCGCCTGCTCCAAGC 61.427 66.667 0.00 0.00 42.82 4.01
2800 5279 2.152016 TGGAGAGTAGTCAGTGTCGTG 58.848 52.381 0.00 0.00 0.00 4.35
2805 5284 3.599730 TGCAATGGAGAGTAGTCAGTG 57.400 47.619 0.00 0.00 0.00 3.66
2811 5299 1.662629 CAGCGTTGCAATGGAGAGTAG 59.337 52.381 19.93 0.00 0.00 2.57
2812 5300 1.675714 CCAGCGTTGCAATGGAGAGTA 60.676 52.381 19.93 0.00 36.09 2.59
2813 5301 0.957395 CCAGCGTTGCAATGGAGAGT 60.957 55.000 19.93 0.00 36.09 3.24
2818 5306 1.517694 GCATCCAGCGTTGCAATGG 60.518 57.895 19.93 15.24 38.72 3.16
2853 5341 3.904339 ACCAGAGAACTGTGTTCCACTAT 59.096 43.478 6.80 0.00 42.05 2.12
2877 5365 7.923888 TGAAGCTTGAAAGATTATGCATAGAC 58.076 34.615 2.10 5.43 34.31 2.59
2880 5368 6.319405 TGCTGAAGCTTGAAAGATTATGCATA 59.681 34.615 2.10 1.16 37.60 3.14
2881 5369 5.126545 TGCTGAAGCTTGAAAGATTATGCAT 59.873 36.000 2.10 3.79 37.60 3.96
2883 5371 4.797349 GTGCTGAAGCTTGAAAGATTATGC 59.203 41.667 2.10 9.40 42.66 3.14
2885 5373 4.095483 CCGTGCTGAAGCTTGAAAGATTAT 59.905 41.667 2.10 0.00 42.66 1.28
2956 5560 3.671928 CACATGTGCTTTTAGCTTGCTTC 59.328 43.478 13.94 0.00 42.97 3.86
2963 5567 4.969816 ACGATAACACATGTGCTTTTAGC 58.030 39.130 25.68 17.16 42.82 3.09
2968 5572 3.861840 AGCTACGATAACACATGTGCTT 58.138 40.909 25.68 19.33 0.00 3.91
3038 5642 1.139654 TGATCATTTCAGAGGCCGAGG 59.860 52.381 0.00 0.00 0.00 4.63
3118 6144 3.020274 GAGTGTAGATGCAGGTCTGAGA 58.980 50.000 1.65 0.00 0.00 3.27
3140 6185 8.041323 TGAACACCTAACTAAAGAAGATCATCC 58.959 37.037 0.00 0.00 0.00 3.51
3143 6188 7.963532 AGTGAACACCTAACTAAAGAAGATCA 58.036 34.615 0.00 0.00 0.00 2.92
3146 6191 7.287005 TCAGAGTGAACACCTAACTAAAGAAGA 59.713 37.037 1.11 0.00 0.00 2.87
3188 6233 1.614317 GGTTCACAGGAATGACAGGGG 60.614 57.143 0.00 0.00 35.05 4.79
3201 6249 6.117488 TCGACTATCTACATACTGGTTCACA 58.883 40.000 0.00 0.00 0.00 3.58
3208 6256 8.440059 GTCATCTTCTCGACTATCTACATACTG 58.560 40.741 0.00 0.00 0.00 2.74
3209 6257 7.604927 GGTCATCTTCTCGACTATCTACATACT 59.395 40.741 0.00 0.00 32.57 2.12
3223 6271 0.687757 TCCCCCAGGTCATCTTCTCG 60.688 60.000 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.