Multiple sequence alignment - TraesCS4D01G254000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G254000 chr4D 100.000 3551 0 0 1 3551 422940283 422936733 0.000000e+00 6558
1 TraesCS4D01G254000 chr4B 93.900 2410 112 20 419 2822 519497968 519495588 0.000000e+00 3603
2 TraesCS4D01G254000 chr4B 91.068 571 22 14 2981 3551 519495592 519495051 0.000000e+00 745
3 TraesCS4D01G254000 chr4B 84.009 444 63 6 1 439 519505313 519504873 1.520000e-113 420
4 TraesCS4D01G254000 chr4A 95.852 1977 73 4 847 2822 41035905 41033937 0.000000e+00 3188
5 TraesCS4D01G254000 chr4A 90.646 588 21 12 2980 3551 41033940 41033371 0.000000e+00 750
6 TraesCS4D01G254000 chr4A 82.955 264 37 5 164 420 18382487 18382749 7.670000e-57 231
7 TraesCS4D01G254000 chr5D 85.824 261 33 3 164 420 556699483 556699223 1.260000e-69 274
8 TraesCS4D01G254000 chr5D 89.714 175 17 1 2813 2986 558575613 558575787 4.610000e-54 222
9 TraesCS4D01G254000 chr5B 85.283 265 32 3 164 422 27825039 27825302 2.100000e-67 267
10 TraesCS4D01G254000 chr7D 84.733 262 31 5 165 420 15431645 15431903 1.640000e-63 254
11 TraesCS4D01G254000 chr1A 83.784 259 34 4 168 420 21407920 21407664 4.580000e-59 239
12 TraesCS4D01G254000 chr3D 91.011 178 13 3 2818 2995 200383815 200383989 1.650000e-58 237
13 TraesCS4D01G254000 chr3D 91.071 168 13 2 2821 2988 537154863 537154698 3.570000e-55 226
14 TraesCS4D01G254000 chr3D 89.831 177 13 5 2814 2988 87925992 87926165 4.610000e-54 222
15 TraesCS4D01G254000 chr2A 82.955 264 37 4 164 420 244467289 244467027 7.670000e-57 231
16 TraesCS4D01G254000 chrUn 82.890 263 38 3 164 420 72942460 72942199 2.760000e-56 230
17 TraesCS4D01G254000 chrUn 82.890 263 38 3 164 420 275548991 275549252 2.760000e-56 230
18 TraesCS4D01G254000 chr6D 92.121 165 10 3 2820 2983 426106892 426106730 2.760000e-56 230
19 TraesCS4D01G254000 chr1D 91.617 167 12 2 2821 2987 120015887 120015723 2.760000e-56 230
20 TraesCS4D01G254000 chr1D 91.617 167 13 1 2821 2987 463381905 463382070 2.760000e-56 230
21 TraesCS4D01G254000 chr2D 91.124 169 14 1 2818 2986 520539240 520539407 9.920000e-56 228
22 TraesCS4D01G254000 chr5A 88.525 183 19 2 2807 2989 320214230 320214410 1.660000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G254000 chr4D 422936733 422940283 3550 True 6558 6558 100.000 1 3551 1 chr4D.!!$R1 3550
1 TraesCS4D01G254000 chr4B 519495051 519497968 2917 True 2174 3603 92.484 419 3551 2 chr4B.!!$R2 3132
2 TraesCS4D01G254000 chr4A 41033371 41035905 2534 True 1969 3188 93.249 847 3551 2 chr4A.!!$R1 2704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
791 793 0.032813 CCATGTGAGGGGCCAAGAAT 60.033 55.0 4.39 0.0 0.0 2.40 F
979 989 0.321653 CTCCCCAAAACCTCCGACAG 60.322 60.0 0.00 0.0 0.0 3.51 F
2460 2470 0.603065 AGAAAATGGCTCGGTTTGGC 59.397 50.0 0.00 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1792 0.397957 TATAGGCCTTCTCCACGCCA 60.398 55.000 12.58 0.00 45.56 5.69 R
2468 2478 0.405198 TCTTTGGCAATCCTCAGGCA 59.595 50.000 0.00 0.00 38.64 4.75 R
3393 3416 2.486592 CAGATTCATGAGCACTTGCACA 59.513 45.455 3.75 3.75 45.04 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.642082 AGAATGTAAGGTTCTATCGTACACT 57.358 36.000 0.00 0.00 34.32 3.55
25 26 7.705214 AGAATGTAAGGTTCTATCGTACACTC 58.295 38.462 0.00 0.00 34.32 3.51
26 27 5.824904 TGTAAGGTTCTATCGTACACTCC 57.175 43.478 0.00 0.00 0.00 3.85
27 28 5.503927 TGTAAGGTTCTATCGTACACTCCT 58.496 41.667 0.00 0.00 0.00 3.69
28 29 6.653020 TGTAAGGTTCTATCGTACACTCCTA 58.347 40.000 0.00 0.00 0.00 2.94
29 30 6.540189 TGTAAGGTTCTATCGTACACTCCTAC 59.460 42.308 0.00 0.00 0.00 3.18
30 31 5.370875 AGGTTCTATCGTACACTCCTACT 57.629 43.478 0.00 0.00 0.00 2.57
31 32 5.753716 AGGTTCTATCGTACACTCCTACTT 58.246 41.667 0.00 0.00 0.00 2.24
32 33 5.821995 AGGTTCTATCGTACACTCCTACTTC 59.178 44.000 0.00 0.00 0.00 3.01
33 34 5.277250 GGTTCTATCGTACACTCCTACTTCG 60.277 48.000 0.00 0.00 0.00 3.79
34 35 5.016051 TCTATCGTACACTCCTACTTCGT 57.984 43.478 0.00 0.00 0.00 3.85
35 36 5.046529 TCTATCGTACACTCCTACTTCGTC 58.953 45.833 0.00 0.00 0.00 4.20
36 37 2.350522 TCGTACACTCCTACTTCGTCC 58.649 52.381 0.00 0.00 0.00 4.79
37 38 2.079158 CGTACACTCCTACTTCGTCCA 58.921 52.381 0.00 0.00 0.00 4.02
38 39 2.485426 CGTACACTCCTACTTCGTCCAA 59.515 50.000 0.00 0.00 0.00 3.53
39 40 3.128242 CGTACACTCCTACTTCGTCCAAT 59.872 47.826 0.00 0.00 0.00 3.16
40 41 4.333649 CGTACACTCCTACTTCGTCCAATA 59.666 45.833 0.00 0.00 0.00 1.90
41 42 5.008415 CGTACACTCCTACTTCGTCCAATAT 59.992 44.000 0.00 0.00 0.00 1.28
42 43 5.934402 ACACTCCTACTTCGTCCAATATT 57.066 39.130 0.00 0.00 0.00 1.28
43 44 7.254898 CGTACACTCCTACTTCGTCCAATATTA 60.255 40.741 0.00 0.00 0.00 0.98
44 45 6.803642 ACACTCCTACTTCGTCCAATATTAC 58.196 40.000 0.00 0.00 0.00 1.89
45 46 5.913514 CACTCCTACTTCGTCCAATATTACG 59.086 44.000 4.69 4.69 40.40 3.18
46 47 4.863491 TCCTACTTCGTCCAATATTACGC 58.137 43.478 5.99 0.00 38.94 4.42
47 48 3.985925 CCTACTTCGTCCAATATTACGCC 59.014 47.826 5.99 0.00 38.94 5.68
48 49 2.830104 ACTTCGTCCAATATTACGCCC 58.170 47.619 5.99 0.00 38.94 6.13
49 50 1.790623 CTTCGTCCAATATTACGCCCG 59.209 52.381 5.99 0.00 38.94 6.13
50 51 0.746063 TCGTCCAATATTACGCCCGT 59.254 50.000 5.99 0.00 38.94 5.28
51 52 1.136695 TCGTCCAATATTACGCCCGTT 59.863 47.619 5.99 0.00 38.94 4.44
52 53 1.523934 CGTCCAATATTACGCCCGTTC 59.476 52.381 0.00 0.00 31.66 3.95
53 54 1.869132 GTCCAATATTACGCCCGTTCC 59.131 52.381 0.00 0.00 0.00 3.62
54 55 1.202675 TCCAATATTACGCCCGTTCCC 60.203 52.381 0.00 0.00 0.00 3.97
55 56 0.863144 CAATATTACGCCCGTTCCCG 59.137 55.000 0.00 0.00 0.00 5.14
56 57 0.881600 AATATTACGCCCGTTCCCGC 60.882 55.000 0.00 0.00 0.00 6.13
57 58 2.720358 ATATTACGCCCGTTCCCGCC 62.720 60.000 0.00 0.00 0.00 6.13
65 66 4.029809 CGTTCCCGCCCCCTTTCT 62.030 66.667 0.00 0.00 0.00 2.52
66 67 2.045242 GTTCCCGCCCCCTTTCTC 60.045 66.667 0.00 0.00 0.00 2.87
67 68 3.335729 TTCCCGCCCCCTTTCTCC 61.336 66.667 0.00 0.00 0.00 3.71
68 69 3.883822 TTCCCGCCCCCTTTCTCCT 62.884 63.158 0.00 0.00 0.00 3.69
69 70 3.339093 CCCGCCCCCTTTCTCCTT 61.339 66.667 0.00 0.00 0.00 3.36
70 71 2.044946 CCGCCCCCTTTCTCCTTG 60.045 66.667 0.00 0.00 0.00 3.61
71 72 2.757077 CGCCCCCTTTCTCCTTGT 59.243 61.111 0.00 0.00 0.00 3.16
72 73 1.559065 CCGCCCCCTTTCTCCTTGTA 61.559 60.000 0.00 0.00 0.00 2.41
73 74 0.546598 CGCCCCCTTTCTCCTTGTAT 59.453 55.000 0.00 0.00 0.00 2.29
74 75 1.064685 CGCCCCCTTTCTCCTTGTATT 60.065 52.381 0.00 0.00 0.00 1.89
75 76 2.171870 CGCCCCCTTTCTCCTTGTATTA 59.828 50.000 0.00 0.00 0.00 0.98
76 77 3.371166 CGCCCCCTTTCTCCTTGTATTAA 60.371 47.826 0.00 0.00 0.00 1.40
77 78 4.688874 CGCCCCCTTTCTCCTTGTATTAAT 60.689 45.833 0.00 0.00 0.00 1.40
78 79 5.208890 GCCCCCTTTCTCCTTGTATTAATT 58.791 41.667 0.00 0.00 0.00 1.40
79 80 5.661312 GCCCCCTTTCTCCTTGTATTAATTT 59.339 40.000 0.00 0.00 0.00 1.82
80 81 6.156256 GCCCCCTTTCTCCTTGTATTAATTTT 59.844 38.462 0.00 0.00 0.00 1.82
81 82 7.311046 GCCCCCTTTCTCCTTGTATTAATTTTT 60.311 37.037 0.00 0.00 0.00 1.94
118 119 1.923356 TTTTCCATCACCCTGAAGCC 58.077 50.000 0.00 0.00 0.00 4.35
119 120 0.776810 TTTCCATCACCCTGAAGCCA 59.223 50.000 0.00 0.00 0.00 4.75
120 121 0.038166 TTCCATCACCCTGAAGCCAC 59.962 55.000 0.00 0.00 0.00 5.01
121 122 1.379044 CCATCACCCTGAAGCCACC 60.379 63.158 0.00 0.00 0.00 4.61
122 123 1.687612 CATCACCCTGAAGCCACCT 59.312 57.895 0.00 0.00 0.00 4.00
123 124 0.393537 CATCACCCTGAAGCCACCTC 60.394 60.000 0.00 0.00 0.00 3.85
124 125 0.842030 ATCACCCTGAAGCCACCTCA 60.842 55.000 0.00 0.00 0.00 3.86
125 126 1.059584 TCACCCTGAAGCCACCTCAA 61.060 55.000 0.00 0.00 0.00 3.02
126 127 0.890996 CACCCTGAAGCCACCTCAAC 60.891 60.000 0.00 0.00 0.00 3.18
127 128 1.062488 ACCCTGAAGCCACCTCAACT 61.062 55.000 0.00 0.00 0.00 3.16
128 129 0.984230 CCCTGAAGCCACCTCAACTA 59.016 55.000 0.00 0.00 0.00 2.24
129 130 1.339151 CCCTGAAGCCACCTCAACTAC 60.339 57.143 0.00 0.00 0.00 2.73
130 131 1.339151 CCTGAAGCCACCTCAACTACC 60.339 57.143 0.00 0.00 0.00 3.18
131 132 0.690762 TGAAGCCACCTCAACTACCC 59.309 55.000 0.00 0.00 0.00 3.69
132 133 0.035343 GAAGCCACCTCAACTACCCC 60.035 60.000 0.00 0.00 0.00 4.95
133 134 0.770557 AAGCCACCTCAACTACCCCA 60.771 55.000 0.00 0.00 0.00 4.96
134 135 1.002502 GCCACCTCAACTACCCCAC 60.003 63.158 0.00 0.00 0.00 4.61
135 136 1.683441 CCACCTCAACTACCCCACC 59.317 63.158 0.00 0.00 0.00 4.61
136 137 1.131303 CCACCTCAACTACCCCACCA 61.131 60.000 0.00 0.00 0.00 4.17
137 138 0.036306 CACCTCAACTACCCCACCAC 59.964 60.000 0.00 0.00 0.00 4.16
138 139 0.400815 ACCTCAACTACCCCACCACA 60.401 55.000 0.00 0.00 0.00 4.17
139 140 0.991920 CCTCAACTACCCCACCACAT 59.008 55.000 0.00 0.00 0.00 3.21
140 141 2.193127 CCTCAACTACCCCACCACATA 58.807 52.381 0.00 0.00 0.00 2.29
141 142 2.777692 CCTCAACTACCCCACCACATAT 59.222 50.000 0.00 0.00 0.00 1.78
142 143 3.202151 CCTCAACTACCCCACCACATATT 59.798 47.826 0.00 0.00 0.00 1.28
143 144 4.325030 CCTCAACTACCCCACCACATATTT 60.325 45.833 0.00 0.00 0.00 1.40
144 145 5.104277 CCTCAACTACCCCACCACATATTTA 60.104 44.000 0.00 0.00 0.00 1.40
145 146 5.747342 TCAACTACCCCACCACATATTTAC 58.253 41.667 0.00 0.00 0.00 2.01
146 147 5.489637 TCAACTACCCCACCACATATTTACT 59.510 40.000 0.00 0.00 0.00 2.24
147 148 6.012333 TCAACTACCCCACCACATATTTACTT 60.012 38.462 0.00 0.00 0.00 2.24
148 149 7.182387 TCAACTACCCCACCACATATTTACTTA 59.818 37.037 0.00 0.00 0.00 2.24
149 150 7.701257 ACTACCCCACCACATATTTACTTAT 57.299 36.000 0.00 0.00 0.00 1.73
150 151 7.742767 ACTACCCCACCACATATTTACTTATC 58.257 38.462 0.00 0.00 0.00 1.75
151 152 6.584471 ACCCCACCACATATTTACTTATCA 57.416 37.500 0.00 0.00 0.00 2.15
152 153 7.161715 ACCCCACCACATATTTACTTATCAT 57.838 36.000 0.00 0.00 0.00 2.45
153 154 8.282801 ACCCCACCACATATTTACTTATCATA 57.717 34.615 0.00 0.00 0.00 2.15
154 155 8.161425 ACCCCACCACATATTTACTTATCATAC 58.839 37.037 0.00 0.00 0.00 2.39
155 156 7.610305 CCCCACCACATATTTACTTATCATACC 59.390 40.741 0.00 0.00 0.00 2.73
156 157 8.383175 CCCACCACATATTTACTTATCATACCT 58.617 37.037 0.00 0.00 0.00 3.08
157 158 9.793259 CCACCACATATTTACTTATCATACCTT 57.207 33.333 0.00 0.00 0.00 3.50
167 168 9.895138 TTTACTTATCATACCTTCTTTGGTACC 57.105 33.333 4.43 4.43 44.34 3.34
168 169 6.896883 ACTTATCATACCTTCTTTGGTACCC 58.103 40.000 10.07 0.00 44.34 3.69
169 170 4.790718 ATCATACCTTCTTTGGTACCCC 57.209 45.455 10.07 0.00 44.34 4.95
170 171 2.848071 TCATACCTTCTTTGGTACCCCC 59.152 50.000 10.07 0.00 44.34 5.40
188 189 2.995283 CCCCCGGTCCTTTTTACTTAG 58.005 52.381 0.00 0.00 0.00 2.18
189 190 2.306805 CCCCCGGTCCTTTTTACTTAGT 59.693 50.000 0.00 0.00 0.00 2.24
190 191 3.519107 CCCCCGGTCCTTTTTACTTAGTA 59.481 47.826 0.00 0.00 0.00 1.82
191 192 4.164796 CCCCCGGTCCTTTTTACTTAGTAT 59.835 45.833 0.00 0.00 0.00 2.12
192 193 5.366477 CCCCCGGTCCTTTTTACTTAGTATA 59.634 44.000 0.00 0.00 0.00 1.47
193 194 6.043590 CCCCCGGTCCTTTTTACTTAGTATAT 59.956 42.308 0.00 0.00 0.00 0.86
194 195 7.235399 CCCCCGGTCCTTTTTACTTAGTATATA 59.765 40.741 0.00 0.00 0.00 0.86
195 196 8.650490 CCCCGGTCCTTTTTACTTAGTATATAA 58.350 37.037 0.00 0.00 0.00 0.98
196 197 9.702494 CCCGGTCCTTTTTACTTAGTATATAAG 57.298 37.037 0.00 0.00 0.00 1.73
278 279 9.864034 CAACATTCACTATACGAAATCAATACC 57.136 33.333 0.00 0.00 0.00 2.73
279 280 9.607988 AACATTCACTATACGAAATCAATACCA 57.392 29.630 0.00 0.00 0.00 3.25
280 281 9.778741 ACATTCACTATACGAAATCAATACCAT 57.221 29.630 0.00 0.00 0.00 3.55
288 289 8.846943 ATACGAAATCAATACCATTAGATGCA 57.153 30.769 0.00 0.00 0.00 3.96
289 290 7.750229 ACGAAATCAATACCATTAGATGCAT 57.250 32.000 0.00 0.00 0.00 3.96
290 291 7.810658 ACGAAATCAATACCATTAGATGCATC 58.189 34.615 19.37 19.37 0.00 3.91
291 292 7.445096 ACGAAATCAATACCATTAGATGCATCA 59.555 33.333 27.81 9.38 0.00 3.07
292 293 8.456471 CGAAATCAATACCATTAGATGCATCAT 58.544 33.333 27.81 15.23 0.00 2.45
293 294 9.569167 GAAATCAATACCATTAGATGCATCATG 57.431 33.333 27.81 21.47 0.00 3.07
294 295 8.873186 AATCAATACCATTAGATGCATCATGA 57.127 30.769 27.81 13.49 0.00 3.07
295 296 8.873186 ATCAATACCATTAGATGCATCATGAA 57.127 30.769 27.81 18.11 0.00 2.57
296 297 8.873186 TCAATACCATTAGATGCATCATGAAT 57.127 30.769 27.81 19.40 0.00 2.57
297 298 9.304335 TCAATACCATTAGATGCATCATGAATT 57.696 29.630 27.81 19.62 0.00 2.17
298 299 9.923143 CAATACCATTAGATGCATCATGAATTT 57.077 29.630 27.81 14.26 0.00 1.82
347 348 9.661563 AGTATTGTAGACGTTGATATTTTTCCA 57.338 29.630 0.00 0.00 0.00 3.53
375 376 7.739498 AAATATGGTCAAACTGTACGAAGTT 57.261 32.000 0.00 0.00 37.78 2.66
394 395 5.296813 AGTTTGACTTCGGACAAATATGC 57.703 39.130 0.00 0.00 40.37 3.14
395 396 4.088648 GTTTGACTTCGGACAAATATGCG 58.911 43.478 0.00 0.00 40.37 4.73
396 397 2.967362 TGACTTCGGACAAATATGCGT 58.033 42.857 0.00 0.00 0.00 5.24
397 398 4.112716 TGACTTCGGACAAATATGCGTA 57.887 40.909 0.00 0.00 0.00 4.42
398 399 4.109766 TGACTTCGGACAAATATGCGTAG 58.890 43.478 0.00 0.00 0.00 3.51
399 400 4.110482 GACTTCGGACAAATATGCGTAGT 58.890 43.478 0.00 0.00 29.95 2.73
400 401 5.163632 TGACTTCGGACAAATATGCGTAGTA 60.164 40.000 0.00 0.00 28.41 1.82
401 402 5.653507 ACTTCGGACAAATATGCGTAGTAA 58.346 37.500 0.00 0.00 0.00 2.24
402 403 6.101332 ACTTCGGACAAATATGCGTAGTAAA 58.899 36.000 0.00 0.00 0.00 2.01
403 404 6.591062 ACTTCGGACAAATATGCGTAGTAAAA 59.409 34.615 0.00 0.00 0.00 1.52
404 405 6.964741 TCGGACAAATATGCGTAGTAAAAA 57.035 33.333 0.00 0.00 0.00 1.94
405 406 6.996106 TCGGACAAATATGCGTAGTAAAAAG 58.004 36.000 0.00 0.00 0.00 2.27
406 407 6.812656 TCGGACAAATATGCGTAGTAAAAAGA 59.187 34.615 0.00 0.00 0.00 2.52
407 408 7.331440 TCGGACAAATATGCGTAGTAAAAAGAA 59.669 33.333 0.00 0.00 0.00 2.52
408 409 7.424452 CGGACAAATATGCGTAGTAAAAAGAAC 59.576 37.037 0.00 0.00 0.00 3.01
409 410 8.448615 GGACAAATATGCGTAGTAAAAAGAACT 58.551 33.333 0.00 0.00 0.00 3.01
410 411 9.262472 GACAAATATGCGTAGTAAAAAGAACTG 57.738 33.333 0.00 0.00 0.00 3.16
411 412 8.995220 ACAAATATGCGTAGTAAAAAGAACTGA 58.005 29.630 0.00 0.00 0.00 3.41
412 413 9.820229 CAAATATGCGTAGTAAAAAGAACTGAA 57.180 29.630 0.00 0.00 0.00 3.02
414 415 5.917541 TGCGTAGTAAAAAGAACTGAAGG 57.082 39.130 0.00 0.00 0.00 3.46
415 416 4.753107 TGCGTAGTAAAAAGAACTGAAGGG 59.247 41.667 0.00 0.00 0.00 3.95
416 417 4.992951 GCGTAGTAAAAAGAACTGAAGGGA 59.007 41.667 0.00 0.00 0.00 4.20
417 418 5.120363 GCGTAGTAAAAAGAACTGAAGGGAG 59.880 44.000 0.00 0.00 0.00 4.30
423 424 9.642343 AGTAAAAAGAACTGAAGGGAGTAAATT 57.358 29.630 0.00 0.00 0.00 1.82
454 456 7.067008 AGTGCTTACAAACAACTGTTCACTAAT 59.933 33.333 9.40 0.00 37.25 1.73
514 516 1.072648 AGCAGGTAAAGCACGGGTTAA 59.927 47.619 0.00 0.00 0.00 2.01
516 518 1.808343 CAGGTAAAGCACGGGTTAACC 59.192 52.381 16.85 16.85 0.00 2.85
517 519 1.701292 AGGTAAAGCACGGGTTAACCT 59.299 47.619 23.69 2.27 36.97 3.50
518 520 2.905736 AGGTAAAGCACGGGTTAACCTA 59.094 45.455 23.69 4.09 36.97 3.08
519 521 3.002791 GGTAAAGCACGGGTTAACCTAC 58.997 50.000 23.69 15.24 36.97 3.18
520 522 3.306989 GGTAAAGCACGGGTTAACCTACT 60.307 47.826 23.69 12.85 36.97 2.57
521 523 4.081697 GGTAAAGCACGGGTTAACCTACTA 60.082 45.833 23.69 4.26 36.97 1.82
522 524 4.831674 AAAGCACGGGTTAACCTACTAT 57.168 40.909 23.69 5.58 36.97 2.12
523 525 4.831674 AAGCACGGGTTAACCTACTATT 57.168 40.909 23.69 11.04 36.97 1.73
524 526 5.937975 AAGCACGGGTTAACCTACTATTA 57.062 39.130 23.69 0.00 36.97 0.98
525 527 6.490241 AAGCACGGGTTAACCTACTATTAT 57.510 37.500 23.69 2.07 36.97 1.28
600 602 5.996513 AGCATAGATTTTCTAGTGCAGATGG 59.003 40.000 15.09 0.00 36.67 3.51
608 610 1.322538 TAGTGCAGATGGCTCGCAGA 61.323 55.000 0.00 0.00 45.15 4.26
614 616 2.286872 CAGATGGCTCGCAGATTTTCT 58.713 47.619 0.00 0.00 33.89 2.52
622 624 4.154195 GGCTCGCAGATTTTCTTAAAGACA 59.846 41.667 0.00 0.00 33.89 3.41
623 625 5.334879 GGCTCGCAGATTTTCTTAAAGACAA 60.335 40.000 0.00 0.00 33.89 3.18
624 626 6.142817 GCTCGCAGATTTTCTTAAAGACAAA 58.857 36.000 0.00 0.00 33.89 2.83
625 627 6.304208 GCTCGCAGATTTTCTTAAAGACAAAG 59.696 38.462 0.00 0.00 33.89 2.77
672 674 8.753497 AAAGACTCTTAAAGACAAAGATGGTT 57.247 30.769 0.00 0.00 32.72 3.67
732 734 1.940613 GTTTGCAAGAGACTGGACGTT 59.059 47.619 0.00 0.00 0.00 3.99
733 735 2.325583 TTGCAAGAGACTGGACGTTT 57.674 45.000 0.00 0.00 0.00 3.60
746 748 2.033550 TGGACGTTTGTTGTGGTATTGC 59.966 45.455 0.00 0.00 0.00 3.56
756 758 0.643820 GTGGTATTGCGTCGTAGTGC 59.356 55.000 0.00 0.00 0.00 4.40
781 783 1.759299 CCCAATGGCCCATGTGAGG 60.759 63.158 0.00 0.00 0.00 3.86
788 790 2.043652 CCCATGTGAGGGGCCAAG 60.044 66.667 4.39 0.00 45.60 3.61
789 791 2.615465 CCCATGTGAGGGGCCAAGA 61.615 63.158 4.39 0.00 45.60 3.02
790 792 1.383799 CCATGTGAGGGGCCAAGAA 59.616 57.895 4.39 0.00 0.00 2.52
791 793 0.032813 CCATGTGAGGGGCCAAGAAT 60.033 55.000 4.39 0.00 0.00 2.40
792 794 1.108776 CATGTGAGGGGCCAAGAATG 58.891 55.000 4.39 0.00 0.00 2.67
839 849 2.024369 TCCACTCTAGCCCATCACACTA 60.024 50.000 0.00 0.00 0.00 2.74
845 855 2.604046 AGCCCATCACACTATTCGAC 57.396 50.000 0.00 0.00 0.00 4.20
892 902 0.744771 GCACGGACCATCCCTCTTTC 60.745 60.000 0.00 0.00 31.13 2.62
979 989 0.321653 CTCCCCAAAACCTCCGACAG 60.322 60.000 0.00 0.00 0.00 3.51
1680 1690 3.020237 GCTCTCCGGGTGGAAGTCC 62.020 68.421 0.00 0.00 45.87 3.85
1683 1693 2.284405 TCCGGGTGGAAGTCCTCC 60.284 66.667 0.00 9.57 46.31 4.30
1782 1792 4.927557 TGCCACTGCAAGAACCAT 57.072 50.000 0.00 0.00 46.66 3.55
1821 1831 0.742281 AGCTGCTCGATGAAATGCGT 60.742 50.000 0.00 0.00 0.00 5.24
1836 1846 1.255882 TGCGTGGGAATGAAATTGCT 58.744 45.000 0.00 0.00 44.84 3.91
2085 2095 7.767659 ACATATAACCTTTTCTTCCGGTTCTAC 59.232 37.037 0.00 0.00 41.09 2.59
2097 2107 1.064654 CGGTTCTACTACTGGGCGTAC 59.935 57.143 0.00 0.00 0.00 3.67
2110 2120 1.000060 GGGCGTACGATATTGGTAGCA 60.000 52.381 21.65 0.00 0.00 3.49
2160 2170 1.200020 GAAAGATGCTTCCCCAACACG 59.800 52.381 0.00 0.00 0.00 4.49
2163 2173 1.523154 GATGCTTCCCCAACACGCAA 61.523 55.000 0.00 0.00 33.94 4.85
2232 2242 2.124942 GCACTAGAGCTGTGGGGC 60.125 66.667 5.51 5.51 36.08 5.80
2256 2266 1.368579 GGTCGAGAACGGGTTTGGA 59.631 57.895 0.00 0.00 40.21 3.53
2307 2317 3.449918 TGACCTGTTATGTGATGAGGGA 58.550 45.455 0.00 0.00 0.00 4.20
2371 2381 2.598394 GGCAGAAACCCAGCAGCA 60.598 61.111 0.00 0.00 0.00 4.41
2460 2470 0.603065 AGAAAATGGCTCGGTTTGGC 59.397 50.000 0.00 0.00 0.00 4.52
2495 2505 1.468914 GGATTGCCAAAGAGTTCGTCC 59.531 52.381 0.00 0.00 0.00 4.79
2507 2517 1.072505 TTCGTCCCCCTGCTGAAAC 59.927 57.895 0.00 0.00 0.00 2.78
2532 2542 3.321968 CACCCGATGGAGATGATACTGAA 59.678 47.826 0.00 0.00 34.81 3.02
2533 2543 3.967326 ACCCGATGGAGATGATACTGAAA 59.033 43.478 0.00 0.00 34.81 2.69
2568 2578 7.465379 GCAACTTAGCATGTTATTCATACGACA 60.465 37.037 0.00 0.00 34.67 4.35
2573 2583 4.449068 GCATGTTATTCATACGACAGGGAG 59.551 45.833 0.00 0.00 34.67 4.30
2577 2587 2.890808 TTCATACGACAGGGAGCATC 57.109 50.000 0.00 0.00 0.00 3.91
2617 2627 3.636679 TGGTTGACCAGGAAATTGTTGA 58.363 40.909 0.00 0.00 42.01 3.18
2619 2629 4.653341 TGGTTGACCAGGAAATTGTTGAAT 59.347 37.500 0.00 0.00 42.01 2.57
2766 2776 5.411361 TCTCCAAACAGGTATGAACAATTCG 59.589 40.000 0.00 0.00 39.02 3.34
2832 2842 9.936329 ATTGTCATTATTAATACTTCCCCTGTT 57.064 29.630 0.00 0.00 0.00 3.16
2833 2843 8.974060 TGTCATTATTAATACTTCCCCTGTTC 57.026 34.615 0.00 0.00 0.00 3.18
2834 2844 7.996644 TGTCATTATTAATACTTCCCCTGTTCC 59.003 37.037 0.00 0.00 0.00 3.62
2835 2845 8.218488 GTCATTATTAATACTTCCCCTGTTCCT 58.782 37.037 0.00 0.00 0.00 3.36
2836 2846 9.455144 TCATTATTAATACTTCCCCTGTTCCTA 57.545 33.333 0.00 0.00 0.00 2.94
2845 2855 7.766736 ACTTCCCCTGTTCCTAAATATAAGT 57.233 36.000 0.00 0.00 0.00 2.24
2846 2856 7.803131 ACTTCCCCTGTTCCTAAATATAAGTC 58.197 38.462 0.00 0.00 0.00 3.01
2847 2857 7.628101 ACTTCCCCTGTTCCTAAATATAAGTCT 59.372 37.037 0.00 0.00 0.00 3.24
2848 2858 8.401955 TTCCCCTGTTCCTAAATATAAGTCTT 57.598 34.615 0.00 0.00 0.00 3.01
2849 2859 8.401955 TCCCCTGTTCCTAAATATAAGTCTTT 57.598 34.615 0.00 0.00 0.00 2.52
2850 2860 8.842764 TCCCCTGTTCCTAAATATAAGTCTTTT 58.157 33.333 0.00 0.00 0.00 2.27
2851 2861 9.475620 CCCCTGTTCCTAAATATAAGTCTTTTT 57.524 33.333 0.00 0.00 0.00 1.94
2880 2890 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
2881 2891 4.395625 TCCACTATGGACTACATACGGAG 58.604 47.826 0.00 0.00 42.67 4.63
2882 2892 3.057456 CCACTATGGACTACATACGGAGC 60.057 52.174 0.00 0.00 40.96 4.70
2883 2893 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
2884 2894 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
2885 2895 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
2886 2896 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2887 2897 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2888 2898 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
2889 2899 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2890 2900 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2891 2901 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2892 2902 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2893 2903 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2894 2904 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2895 2905 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2896 2906 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2897 2907 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2898 2908 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2899 2909 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2900 2910 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2901 2911 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2902 2912 5.163713 GGAGCAAAATGAGTGAATCTACACC 60.164 44.000 0.00 0.00 41.12 4.16
2903 2913 4.702131 AGCAAAATGAGTGAATCTACACCC 59.298 41.667 0.00 0.00 41.12 4.61
2904 2914 4.702131 GCAAAATGAGTGAATCTACACCCT 59.298 41.667 0.00 0.00 41.12 4.34
2905 2915 5.880332 GCAAAATGAGTGAATCTACACCCTA 59.120 40.000 0.00 0.00 41.12 3.53
2906 2916 6.374333 GCAAAATGAGTGAATCTACACCCTAA 59.626 38.462 0.00 0.00 41.12 2.69
2907 2917 7.094377 GCAAAATGAGTGAATCTACACCCTAAA 60.094 37.037 0.00 0.00 41.12 1.85
2908 2918 8.792633 CAAAATGAGTGAATCTACACCCTAAAA 58.207 33.333 0.00 0.00 41.12 1.52
2909 2919 9.533831 AAAATGAGTGAATCTACACCCTAAAAT 57.466 29.630 0.00 0.00 41.12 1.82
2910 2920 8.511604 AATGAGTGAATCTACACCCTAAAATG 57.488 34.615 0.00 0.00 41.12 2.32
2911 2921 7.016153 TGAGTGAATCTACACCCTAAAATGT 57.984 36.000 0.00 0.00 41.12 2.71
2912 2922 6.878923 TGAGTGAATCTACACCCTAAAATGTG 59.121 38.462 0.00 0.00 41.12 3.21
2913 2923 6.779860 AGTGAATCTACACCCTAAAATGTGT 58.220 36.000 0.00 0.00 46.72 3.72
2914 2924 6.879458 AGTGAATCTACACCCTAAAATGTGTC 59.121 38.462 0.00 0.00 44.18 3.67
2915 2925 6.879458 GTGAATCTACACCCTAAAATGTGTCT 59.121 38.462 0.00 0.00 44.18 3.41
2916 2926 8.038944 GTGAATCTACACCCTAAAATGTGTCTA 58.961 37.037 0.00 0.00 44.18 2.59
2917 2927 8.768397 TGAATCTACACCCTAAAATGTGTCTAT 58.232 33.333 0.00 0.00 44.18 1.98
2924 2934 9.998106 ACACCCTAAAATGTGTCTATATACATC 57.002 33.333 0.00 0.00 41.70 3.06
2925 2935 9.436957 CACCCTAAAATGTGTCTATATACATCC 57.563 37.037 0.00 0.00 36.52 3.51
2926 2936 8.311836 ACCCTAAAATGTGTCTATATACATCCG 58.688 37.037 0.00 0.00 36.52 4.18
2927 2937 8.528643 CCCTAAAATGTGTCTATATACATCCGA 58.471 37.037 0.00 0.00 36.52 4.55
2928 2938 9.923143 CCTAAAATGTGTCTATATACATCCGAA 57.077 33.333 0.00 0.00 36.52 4.30
2944 2954 7.915293 ACATCCGAATGTAGTTTGTATTGAA 57.085 32.000 0.00 0.00 44.38 2.69
2945 2955 8.330466 ACATCCGAATGTAGTTTGTATTGAAA 57.670 30.769 0.00 0.00 44.38 2.69
2946 2956 8.956426 ACATCCGAATGTAGTTTGTATTGAAAT 58.044 29.630 0.00 0.00 44.38 2.17
2947 2957 9.438291 CATCCGAATGTAGTTTGTATTGAAATC 57.562 33.333 0.00 0.00 0.00 2.17
2948 2958 7.981142 TCCGAATGTAGTTTGTATTGAAATCC 58.019 34.615 0.00 0.00 0.00 3.01
2949 2959 7.066525 TCCGAATGTAGTTTGTATTGAAATCCC 59.933 37.037 0.00 0.00 0.00 3.85
2950 2960 7.067008 CCGAATGTAGTTTGTATTGAAATCCCT 59.933 37.037 0.00 0.00 0.00 4.20
2951 2961 9.104965 CGAATGTAGTTTGTATTGAAATCCCTA 57.895 33.333 0.00 0.00 0.00 3.53
2958 2968 9.232473 AGTTTGTATTGAAATCCCTAGAAAGAC 57.768 33.333 0.00 0.00 0.00 3.01
2959 2969 9.232473 GTTTGTATTGAAATCCCTAGAAAGACT 57.768 33.333 0.00 0.00 0.00 3.24
2960 2970 9.807921 TTTGTATTGAAATCCCTAGAAAGACTT 57.192 29.630 0.00 0.00 0.00 3.01
2977 2987 9.819267 AGAAAGACTTATATTTAGAAACGGAGG 57.181 33.333 0.00 0.00 0.00 4.30
2978 2988 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
3024 3034 2.104967 CATACAGTGGGGGACGTCTAA 58.895 52.381 16.46 0.00 0.00 2.10
3113 3136 5.266733 TGGTATACCAACGTCATAGAACC 57.733 43.478 22.59 0.00 44.35 3.62
3114 3137 4.957954 TGGTATACCAACGTCATAGAACCT 59.042 41.667 22.59 0.00 44.35 3.50
3115 3138 5.068198 TGGTATACCAACGTCATAGAACCTC 59.932 44.000 22.59 0.00 44.35 3.85
3116 3139 5.068198 GGTATACCAACGTCATAGAACCTCA 59.932 44.000 17.44 0.00 35.64 3.86
3117 3140 5.871396 ATACCAACGTCATAGAACCTCAT 57.129 39.130 0.00 0.00 0.00 2.90
3233 3256 3.999663 CGATTAGGAGATTTGGAGGATGC 59.000 47.826 0.00 0.00 0.00 3.91
3247 3270 0.740516 GGATGCCGGCCAAATTTGTG 60.741 55.000 26.77 9.41 0.00 3.33
3248 3271 0.740516 GATGCCGGCCAAATTTGTGG 60.741 55.000 26.77 15.17 42.05 4.17
3359 3382 1.001378 CAGGGAAGGAAAGCAAACACG 60.001 52.381 0.00 0.00 0.00 4.49
3363 3386 4.004982 GGGAAGGAAAGCAAACACGTATA 58.995 43.478 0.00 0.00 0.00 1.47
3397 3436 4.811555 TTATCGCATGAAGGTAATGTGC 57.188 40.909 0.00 0.00 35.86 4.57
3445 3484 6.670695 ACAGAAGATGTGGCCTTTTTATTT 57.329 33.333 3.32 0.00 41.91 1.40
3446 3485 7.066307 ACAGAAGATGTGGCCTTTTTATTTT 57.934 32.000 3.32 0.00 41.91 1.82
3447 3486 8.189119 ACAGAAGATGTGGCCTTTTTATTTTA 57.811 30.769 3.32 0.00 41.91 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.201803 GGAGTGTACGATAGAACCTTACATTCT 60.202 40.741 0.00 0.00 39.70 2.40
1 2 6.916932 GGAGTGTACGATAGAACCTTACATTC 59.083 42.308 0.00 0.00 41.38 2.67
2 3 6.606395 AGGAGTGTACGATAGAACCTTACATT 59.394 38.462 0.00 0.00 41.38 2.71
3 4 6.127793 AGGAGTGTACGATAGAACCTTACAT 58.872 40.000 0.00 0.00 41.38 2.29
4 5 5.503927 AGGAGTGTACGATAGAACCTTACA 58.496 41.667 0.00 0.00 41.38 2.41
5 6 6.765512 AGTAGGAGTGTACGATAGAACCTTAC 59.234 42.308 0.00 0.00 41.38 2.34
6 7 6.893583 AGTAGGAGTGTACGATAGAACCTTA 58.106 40.000 0.00 0.00 41.38 2.69
7 8 5.753716 AGTAGGAGTGTACGATAGAACCTT 58.246 41.667 0.00 0.00 41.38 3.50
8 9 5.370875 AGTAGGAGTGTACGATAGAACCT 57.629 43.478 0.00 0.00 41.38 3.50
9 10 5.277250 CGAAGTAGGAGTGTACGATAGAACC 60.277 48.000 0.00 0.00 41.38 3.62
10 11 5.293079 ACGAAGTAGGAGTGTACGATAGAAC 59.707 44.000 0.00 0.00 41.94 3.01
11 12 5.423015 ACGAAGTAGGAGTGTACGATAGAA 58.577 41.667 0.00 0.00 41.94 2.10
12 13 5.016051 ACGAAGTAGGAGTGTACGATAGA 57.984 43.478 0.00 0.00 41.94 1.98
29 30 1.790623 CGGGCGTAATATTGGACGAAG 59.209 52.381 13.59 1.93 41.60 3.79
30 31 1.136695 ACGGGCGTAATATTGGACGAA 59.863 47.619 13.59 0.00 41.60 3.85
31 32 0.746063 ACGGGCGTAATATTGGACGA 59.254 50.000 13.59 0.00 41.60 4.20
32 33 1.523934 GAACGGGCGTAATATTGGACG 59.476 52.381 6.43 6.43 41.97 4.79
33 34 1.869132 GGAACGGGCGTAATATTGGAC 59.131 52.381 0.00 0.00 0.00 4.02
34 35 1.202675 GGGAACGGGCGTAATATTGGA 60.203 52.381 0.00 0.00 0.00 3.53
35 36 1.232119 GGGAACGGGCGTAATATTGG 58.768 55.000 0.00 0.00 0.00 3.16
49 50 2.045242 GAGAAAGGGGGCGGGAAC 60.045 66.667 0.00 0.00 0.00 3.62
50 51 3.335729 GGAGAAAGGGGGCGGGAA 61.336 66.667 0.00 0.00 0.00 3.97
51 52 3.883822 AAGGAGAAAGGGGGCGGGA 62.884 63.158 0.00 0.00 0.00 5.14
52 53 3.339093 AAGGAGAAAGGGGGCGGG 61.339 66.667 0.00 0.00 0.00 6.13
53 54 1.559065 TACAAGGAGAAAGGGGGCGG 61.559 60.000 0.00 0.00 0.00 6.13
54 55 0.546598 ATACAAGGAGAAAGGGGGCG 59.453 55.000 0.00 0.00 0.00 6.13
55 56 2.828661 AATACAAGGAGAAAGGGGGC 57.171 50.000 0.00 0.00 0.00 5.80
56 57 7.733773 AAAATTAATACAAGGAGAAAGGGGG 57.266 36.000 0.00 0.00 0.00 5.40
98 99 2.247358 GGCTTCAGGGTGATGGAAAAA 58.753 47.619 0.00 0.00 0.00 1.94
99 100 1.146774 TGGCTTCAGGGTGATGGAAAA 59.853 47.619 0.00 0.00 0.00 2.29
100 101 0.776810 TGGCTTCAGGGTGATGGAAA 59.223 50.000 0.00 0.00 0.00 3.13
101 102 0.038166 GTGGCTTCAGGGTGATGGAA 59.962 55.000 0.00 0.00 0.00 3.53
102 103 1.685224 GTGGCTTCAGGGTGATGGA 59.315 57.895 0.00 0.00 0.00 3.41
103 104 1.379044 GGTGGCTTCAGGGTGATGG 60.379 63.158 0.00 0.00 0.00 3.51
104 105 0.393537 GAGGTGGCTTCAGGGTGATG 60.394 60.000 0.00 0.00 0.00 3.07
105 106 0.842030 TGAGGTGGCTTCAGGGTGAT 60.842 55.000 0.00 0.00 0.00 3.06
106 107 1.059584 TTGAGGTGGCTTCAGGGTGA 61.060 55.000 0.00 0.00 0.00 4.02
107 108 0.890996 GTTGAGGTGGCTTCAGGGTG 60.891 60.000 0.00 0.00 0.00 4.61
108 109 1.062488 AGTTGAGGTGGCTTCAGGGT 61.062 55.000 0.00 0.00 0.00 4.34
109 110 0.984230 TAGTTGAGGTGGCTTCAGGG 59.016 55.000 0.00 0.00 0.00 4.45
110 111 1.339151 GGTAGTTGAGGTGGCTTCAGG 60.339 57.143 0.00 0.00 0.00 3.86
111 112 1.339151 GGGTAGTTGAGGTGGCTTCAG 60.339 57.143 0.00 0.00 0.00 3.02
112 113 0.690762 GGGTAGTTGAGGTGGCTTCA 59.309 55.000 0.00 0.00 0.00 3.02
113 114 0.035343 GGGGTAGTTGAGGTGGCTTC 60.035 60.000 0.00 0.00 0.00 3.86
114 115 0.770557 TGGGGTAGTTGAGGTGGCTT 60.771 55.000 0.00 0.00 0.00 4.35
115 116 1.151899 TGGGGTAGTTGAGGTGGCT 60.152 57.895 0.00 0.00 0.00 4.75
116 117 1.002502 GTGGGGTAGTTGAGGTGGC 60.003 63.158 0.00 0.00 0.00 5.01
117 118 1.131303 TGGTGGGGTAGTTGAGGTGG 61.131 60.000 0.00 0.00 0.00 4.61
118 119 0.036306 GTGGTGGGGTAGTTGAGGTG 59.964 60.000 0.00 0.00 0.00 4.00
119 120 0.400815 TGTGGTGGGGTAGTTGAGGT 60.401 55.000 0.00 0.00 0.00 3.85
120 121 0.991920 ATGTGGTGGGGTAGTTGAGG 59.008 55.000 0.00 0.00 0.00 3.86
121 122 4.503714 AATATGTGGTGGGGTAGTTGAG 57.496 45.455 0.00 0.00 0.00 3.02
122 123 4.938575 AAATATGTGGTGGGGTAGTTGA 57.061 40.909 0.00 0.00 0.00 3.18
123 124 5.751586 AGTAAATATGTGGTGGGGTAGTTG 58.248 41.667 0.00 0.00 0.00 3.16
124 125 6.397217 AAGTAAATATGTGGTGGGGTAGTT 57.603 37.500 0.00 0.00 0.00 2.24
125 126 7.348801 TGATAAGTAAATATGTGGTGGGGTAGT 59.651 37.037 0.00 0.00 0.00 2.73
126 127 7.741785 TGATAAGTAAATATGTGGTGGGGTAG 58.258 38.462 0.00 0.00 0.00 3.18
127 128 7.693533 TGATAAGTAAATATGTGGTGGGGTA 57.306 36.000 0.00 0.00 0.00 3.69
128 129 6.584471 TGATAAGTAAATATGTGGTGGGGT 57.416 37.500 0.00 0.00 0.00 4.95
129 130 7.610305 GGTATGATAAGTAAATATGTGGTGGGG 59.390 40.741 0.00 0.00 0.00 4.96
130 131 8.383175 AGGTATGATAAGTAAATATGTGGTGGG 58.617 37.037 0.00 0.00 0.00 4.61
131 132 9.793259 AAGGTATGATAAGTAAATATGTGGTGG 57.207 33.333 0.00 0.00 0.00 4.61
141 142 9.895138 GGTACCAAAGAAGGTATGATAAGTAAA 57.105 33.333 7.15 0.00 45.32 2.01
168 169 2.306805 ACTAAGTAAAAAGGACCGGGGG 59.693 50.000 6.32 0.00 0.00 5.40
169 170 3.708403 ACTAAGTAAAAAGGACCGGGG 57.292 47.619 6.32 0.00 0.00 5.73
170 171 9.702494 CTTATATACTAAGTAAAAAGGACCGGG 57.298 37.037 6.32 0.00 0.00 5.73
252 253 9.864034 GGTATTGATTTCGTATAGTGAATGTTG 57.136 33.333 0.00 0.00 0.00 3.33
253 254 9.607988 TGGTATTGATTTCGTATAGTGAATGTT 57.392 29.630 0.00 0.00 0.00 2.71
254 255 9.778741 ATGGTATTGATTTCGTATAGTGAATGT 57.221 29.630 0.00 0.00 0.00 2.71
262 263 9.936759 TGCATCTAATGGTATTGATTTCGTATA 57.063 29.630 0.00 0.00 0.00 1.47
263 264 8.846943 TGCATCTAATGGTATTGATTTCGTAT 57.153 30.769 0.00 0.00 0.00 3.06
264 265 8.846943 ATGCATCTAATGGTATTGATTTCGTA 57.153 30.769 0.00 0.00 0.00 3.43
265 266 7.445096 TGATGCATCTAATGGTATTGATTTCGT 59.555 33.333 26.32 0.00 0.00 3.85
266 267 7.809665 TGATGCATCTAATGGTATTGATTTCG 58.190 34.615 26.32 0.00 0.00 3.46
267 268 9.569167 CATGATGCATCTAATGGTATTGATTTC 57.431 33.333 26.32 0.00 0.00 2.17
268 269 9.304335 TCATGATGCATCTAATGGTATTGATTT 57.696 29.630 26.32 0.00 0.00 2.17
269 270 8.873186 TCATGATGCATCTAATGGTATTGATT 57.127 30.769 26.32 0.00 0.00 2.57
270 271 8.873186 TTCATGATGCATCTAATGGTATTGAT 57.127 30.769 26.32 5.19 0.00 2.57
271 272 8.873186 ATTCATGATGCATCTAATGGTATTGA 57.127 30.769 26.32 12.12 0.00 2.57
272 273 9.923143 AAATTCATGATGCATCTAATGGTATTG 57.077 29.630 26.32 10.34 0.00 1.90
321 322 9.661563 TGGAAAAATATCAACGTCTACAATACT 57.338 29.630 0.00 0.00 0.00 2.12
349 350 9.444600 AACTTCGTACAGTTTGACCATATTTAT 57.555 29.630 0.00 0.00 32.81 1.40
350 351 8.836268 AACTTCGTACAGTTTGACCATATTTA 57.164 30.769 0.00 0.00 32.81 1.40
351 352 7.739498 AACTTCGTACAGTTTGACCATATTT 57.261 32.000 0.00 0.00 32.81 1.40
352 353 7.739498 AAACTTCGTACAGTTTGACCATATT 57.261 32.000 9.80 0.00 43.88 1.28
371 372 5.616866 CGCATATTTGTCCGAAGTCAAACTT 60.617 40.000 0.00 0.00 41.95 2.66
372 373 4.142902 CGCATATTTGTCCGAAGTCAAACT 60.143 41.667 0.00 0.00 36.58 2.66
373 374 4.088648 CGCATATTTGTCCGAAGTCAAAC 58.911 43.478 0.00 0.00 36.58 2.93
374 375 3.749088 ACGCATATTTGTCCGAAGTCAAA 59.251 39.130 0.00 0.00 37.82 2.69
375 376 3.331150 ACGCATATTTGTCCGAAGTCAA 58.669 40.909 0.00 0.00 0.00 3.18
376 377 2.967362 ACGCATATTTGTCCGAAGTCA 58.033 42.857 0.00 0.00 0.00 3.41
377 378 4.110482 ACTACGCATATTTGTCCGAAGTC 58.890 43.478 0.00 0.00 0.00 3.01
378 379 4.119442 ACTACGCATATTTGTCCGAAGT 57.881 40.909 0.00 0.00 0.00 3.01
379 380 6.578020 TTTACTACGCATATTTGTCCGAAG 57.422 37.500 0.00 0.00 0.00 3.79
380 381 6.964741 TTTTACTACGCATATTTGTCCGAA 57.035 33.333 0.00 0.00 0.00 4.30
381 382 6.812656 TCTTTTTACTACGCATATTTGTCCGA 59.187 34.615 0.00 0.00 0.00 4.55
382 383 6.996106 TCTTTTTACTACGCATATTTGTCCG 58.004 36.000 0.00 0.00 0.00 4.79
383 384 8.448615 AGTTCTTTTTACTACGCATATTTGTCC 58.551 33.333 0.00 0.00 0.00 4.02
384 385 9.262472 CAGTTCTTTTTACTACGCATATTTGTC 57.738 33.333 0.00 0.00 0.00 3.18
385 386 8.995220 TCAGTTCTTTTTACTACGCATATTTGT 58.005 29.630 0.00 0.00 0.00 2.83
386 387 9.820229 TTCAGTTCTTTTTACTACGCATATTTG 57.180 29.630 0.00 0.00 0.00 2.32
388 389 8.665685 CCTTCAGTTCTTTTTACTACGCATATT 58.334 33.333 0.00 0.00 0.00 1.28
389 390 7.280205 CCCTTCAGTTCTTTTTACTACGCATAT 59.720 37.037 0.00 0.00 0.00 1.78
390 391 6.592607 CCCTTCAGTTCTTTTTACTACGCATA 59.407 38.462 0.00 0.00 0.00 3.14
391 392 5.411669 CCCTTCAGTTCTTTTTACTACGCAT 59.588 40.000 0.00 0.00 0.00 4.73
392 393 4.753107 CCCTTCAGTTCTTTTTACTACGCA 59.247 41.667 0.00 0.00 0.00 5.24
393 394 4.992951 TCCCTTCAGTTCTTTTTACTACGC 59.007 41.667 0.00 0.00 0.00 4.42
394 395 6.221659 ACTCCCTTCAGTTCTTTTTACTACG 58.778 40.000 0.00 0.00 0.00 3.51
395 396 9.551734 TTTACTCCCTTCAGTTCTTTTTACTAC 57.448 33.333 0.00 0.00 0.00 2.73
397 398 9.642343 AATTTACTCCCTTCAGTTCTTTTTACT 57.358 29.630 0.00 0.00 0.00 2.24
401 402 9.862149 TCTTAATTTACTCCCTTCAGTTCTTTT 57.138 29.630 0.00 0.00 0.00 2.27
402 403 9.862149 TTCTTAATTTACTCCCTTCAGTTCTTT 57.138 29.630 0.00 0.00 0.00 2.52
403 404 9.508642 CTTCTTAATTTACTCCCTTCAGTTCTT 57.491 33.333 0.00 0.00 0.00 2.52
404 405 8.661345 ACTTCTTAATTTACTCCCTTCAGTTCT 58.339 33.333 0.00 0.00 0.00 3.01
405 406 8.722394 CACTTCTTAATTTACTCCCTTCAGTTC 58.278 37.037 0.00 0.00 0.00 3.01
406 407 7.175119 GCACTTCTTAATTTACTCCCTTCAGTT 59.825 37.037 0.00 0.00 0.00 3.16
407 408 6.655425 GCACTTCTTAATTTACTCCCTTCAGT 59.345 38.462 0.00 0.00 0.00 3.41
408 409 6.881602 AGCACTTCTTAATTTACTCCCTTCAG 59.118 38.462 0.00 0.00 0.00 3.02
409 410 6.779860 AGCACTTCTTAATTTACTCCCTTCA 58.220 36.000 0.00 0.00 0.00 3.02
410 411 7.689446 AAGCACTTCTTAATTTACTCCCTTC 57.311 36.000 0.00 0.00 32.10 3.46
411 412 8.161425 TGTAAGCACTTCTTAATTTACTCCCTT 58.839 33.333 0.00 0.00 38.86 3.95
412 413 7.686434 TGTAAGCACTTCTTAATTTACTCCCT 58.314 34.615 0.00 0.00 38.86 4.20
413 414 7.916914 TGTAAGCACTTCTTAATTTACTCCC 57.083 36.000 0.00 0.00 38.86 4.30
414 415 9.608617 GTTTGTAAGCACTTCTTAATTTACTCC 57.391 33.333 0.00 0.00 38.86 3.85
423 424 6.995511 ACAGTTGTTTGTAAGCACTTCTTA 57.004 33.333 0.00 0.00 36.25 2.10
426 427 5.511729 GTGAACAGTTGTTTGTAAGCACTTC 59.488 40.000 0.00 0.00 38.56 3.01
482 484 7.915397 CGTGCTTTACCTGCTCATATTAATTTT 59.085 33.333 0.00 0.00 0.00 1.82
495 497 1.198408 GTTAACCCGTGCTTTACCTGC 59.802 52.381 0.00 0.00 0.00 4.85
504 506 7.558161 AAAATAATAGTAGGTTAACCCGTGC 57.442 36.000 21.30 7.42 38.74 5.34
514 516 6.464892 GCCGGGGAGTAAAAATAATAGTAGGT 60.465 42.308 2.18 0.00 0.00 3.08
516 518 6.527423 TGCCGGGGAGTAAAAATAATAGTAG 58.473 40.000 2.18 0.00 0.00 2.57
517 519 6.497624 TGCCGGGGAGTAAAAATAATAGTA 57.502 37.500 2.18 0.00 0.00 1.82
518 520 5.376756 TGCCGGGGAGTAAAAATAATAGT 57.623 39.130 2.18 0.00 0.00 2.12
519 521 6.488683 TCATTGCCGGGGAGTAAAAATAATAG 59.511 38.462 2.18 0.00 0.00 1.73
520 522 6.366340 TCATTGCCGGGGAGTAAAAATAATA 58.634 36.000 2.18 0.00 0.00 0.98
521 523 5.205056 TCATTGCCGGGGAGTAAAAATAAT 58.795 37.500 2.18 0.00 0.00 1.28
522 524 4.601084 TCATTGCCGGGGAGTAAAAATAA 58.399 39.130 2.18 0.00 0.00 1.40
523 525 4.237976 TCATTGCCGGGGAGTAAAAATA 57.762 40.909 2.18 0.00 0.00 1.40
524 526 3.094484 TCATTGCCGGGGAGTAAAAAT 57.906 42.857 2.18 0.00 0.00 1.82
525 527 2.588464 TCATTGCCGGGGAGTAAAAA 57.412 45.000 2.18 0.00 0.00 1.94
535 537 0.801872 TCACGTGATTTCATTGCCGG 59.198 50.000 15.76 0.00 0.00 6.13
574 576 7.658982 CCATCTGCACTAGAAAATCTATGCTAA 59.341 37.037 0.00 9.13 39.30 3.09
576 578 5.996513 CCATCTGCACTAGAAAATCTATGCT 59.003 40.000 0.00 0.00 39.30 3.79
580 582 5.605534 GAGCCATCTGCACTAGAAAATCTA 58.394 41.667 0.00 0.00 44.83 1.98
589 591 1.142531 CTGCGAGCCATCTGCACTA 59.857 57.895 0.00 0.00 44.83 2.74
591 593 1.094073 AATCTGCGAGCCATCTGCAC 61.094 55.000 0.00 0.00 44.83 4.57
600 602 5.283060 TGTCTTTAAGAAAATCTGCGAGC 57.717 39.130 0.00 0.00 0.00 5.03
653 655 5.278266 CCGCAAACCATCTTTGTCTTTAAGA 60.278 40.000 0.00 0.00 36.18 2.10
654 656 4.917415 CCGCAAACCATCTTTGTCTTTAAG 59.083 41.667 0.00 0.00 0.00 1.85
655 657 4.794655 GCCGCAAACCATCTTTGTCTTTAA 60.795 41.667 0.00 0.00 0.00 1.52
656 658 3.305064 GCCGCAAACCATCTTTGTCTTTA 60.305 43.478 0.00 0.00 0.00 1.85
658 660 1.000274 GCCGCAAACCATCTTTGTCTT 60.000 47.619 0.00 0.00 0.00 3.01
659 661 0.598065 GCCGCAAACCATCTTTGTCT 59.402 50.000 0.00 0.00 0.00 3.41
661 663 1.112315 TGGCCGCAAACCATCTTTGT 61.112 50.000 0.00 0.00 30.29 2.83
662 664 0.247185 ATGGCCGCAAACCATCTTTG 59.753 50.000 0.00 0.00 44.85 2.77
663 665 0.247185 CATGGCCGCAAACCATCTTT 59.753 50.000 0.00 0.00 44.85 2.52
664 666 1.892338 CATGGCCGCAAACCATCTT 59.108 52.632 0.00 0.00 44.85 2.40
665 667 2.713967 GCATGGCCGCAAACCATCT 61.714 57.895 0.00 0.00 44.85 2.90
666 668 2.202783 GCATGGCCGCAAACCATC 60.203 61.111 0.00 0.00 44.85 3.51
706 708 2.229784 CCAGTCTCTTGCAAACATTCCC 59.770 50.000 0.00 0.00 0.00 3.97
732 734 1.584175 ACGACGCAATACCACAACAA 58.416 45.000 0.00 0.00 0.00 2.83
733 735 2.288334 ACTACGACGCAATACCACAACA 60.288 45.455 0.00 0.00 0.00 3.33
746 748 1.297451 GGCTACGAGCACTACGACG 60.297 63.158 8.71 0.00 44.75 5.12
775 777 1.383799 CCATTCTTGGCCCCTCACA 59.616 57.895 0.00 0.00 35.85 3.58
784 786 1.210931 CGTGCTGTGCCATTCTTGG 59.789 57.895 0.00 0.00 46.66 3.61
785 787 0.167470 CTCGTGCTGTGCCATTCTTG 59.833 55.000 0.00 0.00 0.00 3.02
786 788 1.580845 GCTCGTGCTGTGCCATTCTT 61.581 55.000 1.41 0.00 36.03 2.52
787 789 2.037136 GCTCGTGCTGTGCCATTCT 61.037 57.895 1.41 0.00 36.03 2.40
788 790 2.482374 GCTCGTGCTGTGCCATTC 59.518 61.111 1.41 0.00 36.03 2.67
794 796 2.661537 TTCGTGGCTCGTGCTGTG 60.662 61.111 9.61 0.00 40.80 3.66
795 797 2.356313 CTTCGTGGCTCGTGCTGT 60.356 61.111 9.61 0.00 40.80 4.40
796 798 2.356313 ACTTCGTGGCTCGTGCTG 60.356 61.111 9.61 0.32 40.80 4.41
797 799 2.356313 CACTTCGTGGCTCGTGCT 60.356 61.111 9.61 0.00 40.80 4.40
798 800 1.291877 ATTCACTTCGTGGCTCGTGC 61.292 55.000 8.94 0.00 40.80 5.34
799 801 1.126846 GAATTCACTTCGTGGCTCGTG 59.873 52.381 8.94 6.09 40.80 4.35
800 802 1.429463 GAATTCACTTCGTGGCTCGT 58.571 50.000 8.94 0.00 40.80 4.18
801 803 0.721718 GGAATTCACTTCGTGGCTCG 59.278 55.000 7.93 1.94 41.41 5.03
878 888 2.423517 GGGAATGGAAAGAGGGATGGTC 60.424 54.545 0.00 0.00 0.00 4.02
892 902 1.325476 GCAGCTTGGAAGGGGAATGG 61.325 60.000 0.00 0.00 0.00 3.16
1680 1690 2.356793 GCATCGGCATCCTCGGAG 60.357 66.667 0.00 0.00 40.72 4.63
1683 1693 2.586079 AACGCATCGGCATCCTCG 60.586 61.111 0.00 0.00 41.24 4.63
1725 1735 3.054802 AGGTGACCAAGTCAGGATCAATC 60.055 47.826 3.63 0.00 43.57 2.67
1781 1791 1.056700 ATAGGCCTTCTCCACGCCAT 61.057 55.000 12.58 0.00 45.56 4.40
1782 1792 0.397957 TATAGGCCTTCTCCACGCCA 60.398 55.000 12.58 0.00 45.56 5.69
1836 1846 2.817844 CGTATAGGTGATCACATCGGGA 59.182 50.000 26.47 5.65 31.58 5.14
1932 1942 1.601703 CACATCCGGGTGACATCCA 59.398 57.895 24.73 0.00 41.32 3.41
2085 2095 2.295349 ACCAATATCGTACGCCCAGTAG 59.705 50.000 11.24 0.00 35.72 2.57
2097 2107 0.859232 GCCACGTGCTACCAATATCG 59.141 55.000 10.91 0.00 36.87 2.92
2110 2120 1.014044 CGCTCATACAACAGCCACGT 61.014 55.000 0.00 0.00 31.37 4.49
2178 2188 4.563374 CCATGCCGATGACATAACCTGATA 60.563 45.833 0.00 0.00 0.00 2.15
2307 2317 0.546267 TCTCAGCCTCCTCCAGCTTT 60.546 55.000 0.00 0.00 37.18 3.51
2468 2478 0.405198 TCTTTGGCAATCCTCAGGCA 59.595 50.000 0.00 0.00 38.64 4.75
2495 2505 1.903404 GGTGTGGTTTCAGCAGGGG 60.903 63.158 0.00 0.00 36.09 4.79
2507 2517 0.761187 ATCATCTCCATCGGGTGTGG 59.239 55.000 0.00 0.00 38.11 4.17
2564 2574 2.028420 TCAAATGATGCTCCCTGTCG 57.972 50.000 0.00 0.00 0.00 4.35
2587 2597 2.697751 TCCTGGTCAACCAAATTTGTGG 59.302 45.455 16.73 6.03 46.97 4.17
2608 2618 7.785033 ACTCTTCAGAACCAATTCAACAATTT 58.215 30.769 0.00 0.00 37.29 1.82
2611 2621 6.376864 TGAACTCTTCAGAACCAATTCAACAA 59.623 34.615 0.00 0.00 37.29 2.83
2613 2623 6.377327 TGAACTCTTCAGAACCAATTCAAC 57.623 37.500 0.00 0.00 37.29 3.18
2614 2624 7.068593 ACAATGAACTCTTCAGAACCAATTCAA 59.931 33.333 0.00 0.00 43.98 2.69
2616 2626 6.974965 ACAATGAACTCTTCAGAACCAATTC 58.025 36.000 0.00 0.00 43.98 2.17
2617 2627 6.966534 ACAATGAACTCTTCAGAACCAATT 57.033 33.333 0.00 0.00 43.98 2.32
2619 2629 6.591935 AGTACAATGAACTCTTCAGAACCAA 58.408 36.000 0.00 0.00 43.98 3.67
2766 2776 5.601662 TCGATTGTCTCTCAATAACATCCC 58.398 41.667 0.00 0.00 45.49 3.85
2819 2829 9.461734 ACTTATATTTAGGAACAGGGGAAGTAT 57.538 33.333 0.00 0.00 0.00 2.12
2820 2830 8.865244 ACTTATATTTAGGAACAGGGGAAGTA 57.135 34.615 0.00 0.00 0.00 2.24
2821 2831 7.628101 AGACTTATATTTAGGAACAGGGGAAGT 59.372 37.037 0.00 0.00 0.00 3.01
2822 2832 8.035448 AGACTTATATTTAGGAACAGGGGAAG 57.965 38.462 0.00 0.00 0.00 3.46
2823 2833 8.401955 AAGACTTATATTTAGGAACAGGGGAA 57.598 34.615 0.00 0.00 0.00 3.97
2824 2834 8.401955 AAAGACTTATATTTAGGAACAGGGGA 57.598 34.615 0.00 0.00 0.00 4.81
2825 2835 9.475620 AAAAAGACTTATATTTAGGAACAGGGG 57.524 33.333 0.00 0.00 0.00 4.79
2859 2869 4.395625 CTCCGTATGTAGTCCATAGTGGA 58.604 47.826 0.00 0.00 45.98 4.02
2860 2870 3.057456 GCTCCGTATGTAGTCCATAGTGG 60.057 52.174 0.00 0.00 36.71 4.00
2861 2871 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
2862 2872 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
2863 2873 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
2864 2874 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
2865 2875 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2866 2876 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2867 2877 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2868 2878 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2869 2879 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2870 2880 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2871 2881 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2872 2882 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2873 2883 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2874 2884 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2875 2885 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2876 2886 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2877 2887 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2878 2888 5.163713 GGTGTAGATTCACTCATTTTGCTCC 60.164 44.000 0.00 0.00 38.28 4.70
2879 2889 5.163713 GGGTGTAGATTCACTCATTTTGCTC 60.164 44.000 0.00 0.00 38.54 4.26
2880 2890 4.702131 GGGTGTAGATTCACTCATTTTGCT 59.298 41.667 0.00 0.00 38.54 3.91
2881 2891 4.702131 AGGGTGTAGATTCACTCATTTTGC 59.298 41.667 0.00 0.00 40.86 3.68
2882 2892 7.921786 TTAGGGTGTAGATTCACTCATTTTG 57.078 36.000 0.00 0.00 40.86 2.44
2883 2893 8.934023 TTTTAGGGTGTAGATTCACTCATTTT 57.066 30.769 0.00 0.00 40.86 1.82
2884 2894 8.960591 CATTTTAGGGTGTAGATTCACTCATTT 58.039 33.333 0.00 0.00 40.86 2.32
2885 2895 8.109634 ACATTTTAGGGTGTAGATTCACTCATT 58.890 33.333 0.00 0.00 40.86 2.57
2886 2896 7.554118 CACATTTTAGGGTGTAGATTCACTCAT 59.446 37.037 0.00 0.00 40.86 2.90
2887 2897 6.878923 CACATTTTAGGGTGTAGATTCACTCA 59.121 38.462 0.00 0.00 40.86 3.41
2888 2898 6.879458 ACACATTTTAGGGTGTAGATTCACTC 59.121 38.462 0.00 0.00 45.77 3.51
2889 2899 6.779860 ACACATTTTAGGGTGTAGATTCACT 58.220 36.000 0.00 0.00 45.77 3.41
2899 2909 9.436957 GGATGTATATAGACACATTTTAGGGTG 57.563 37.037 1.52 0.00 35.55 4.61
2900 2910 8.311836 CGGATGTATATAGACACATTTTAGGGT 58.688 37.037 1.52 0.00 35.55 4.34
2901 2911 8.528643 TCGGATGTATATAGACACATTTTAGGG 58.471 37.037 1.52 0.00 35.55 3.53
2902 2912 9.923143 TTCGGATGTATATAGACACATTTTAGG 57.077 33.333 1.52 0.00 35.55 2.69
2905 2915 9.778741 ACATTCGGATGTATATAGACACATTTT 57.221 29.630 7.81 0.00 44.51 1.82
2908 2918 9.244292 ACTACATTCGGATGTATATAGACACAT 57.756 33.333 16.89 0.00 45.20 3.21
2909 2919 8.631480 ACTACATTCGGATGTATATAGACACA 57.369 34.615 16.89 0.00 45.20 3.72
2910 2920 9.909644 AAACTACATTCGGATGTATATAGACAC 57.090 33.333 16.89 0.00 45.20 3.67
2911 2921 9.908152 CAAACTACATTCGGATGTATATAGACA 57.092 33.333 16.89 2.07 45.20 3.41
2912 2922 9.909644 ACAAACTACATTCGGATGTATATAGAC 57.090 33.333 16.89 0.00 45.20 2.59
2918 2928 9.607988 TTCAATACAAACTACATTCGGATGTAT 57.392 29.630 16.89 4.68 45.20 2.29
2919 2929 9.438228 TTTCAATACAAACTACATTCGGATGTA 57.562 29.630 15.76 15.76 44.51 2.29
2921 2931 9.438291 GATTTCAATACAAACTACATTCGGATG 57.562 33.333 0.88 0.88 39.25 3.51
2922 2932 8.621286 GGATTTCAATACAAACTACATTCGGAT 58.379 33.333 0.00 0.00 0.00 4.18
2923 2933 7.066525 GGGATTTCAATACAAACTACATTCGGA 59.933 37.037 0.00 0.00 0.00 4.55
2924 2934 7.067008 AGGGATTTCAATACAAACTACATTCGG 59.933 37.037 0.00 0.00 0.00 4.30
2925 2935 7.985476 AGGGATTTCAATACAAACTACATTCG 58.015 34.615 0.00 0.00 0.00 3.34
2932 2942 9.232473 GTCTTTCTAGGGATTTCAATACAAACT 57.768 33.333 0.00 0.00 0.00 2.66
2933 2943 9.232473 AGTCTTTCTAGGGATTTCAATACAAAC 57.768 33.333 0.00 0.00 0.00 2.93
2934 2944 9.807921 AAGTCTTTCTAGGGATTTCAATACAAA 57.192 29.630 0.00 0.00 0.00 2.83
2951 2961 9.819267 CCTCCGTTTCTAAATATAAGTCTTTCT 57.181 33.333 0.00 0.00 0.00 2.52
2952 2962 9.043079 CCCTCCGTTTCTAAATATAAGTCTTTC 57.957 37.037 0.00 0.00 0.00 2.62
2953 2963 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2954 2964 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
2955 2965 7.909485 TCCCTCCGTTTCTAAATATAAGTCT 57.091 36.000 0.00 0.00 0.00 3.24
2967 2977 8.155510 GGAAAGTTATATATTCCCTCCGTTTCT 58.844 37.037 3.14 0.00 37.28 2.52
2968 2978 8.155510 AGGAAAGTTATATATTCCCTCCGTTTC 58.844 37.037 9.17 0.00 42.93 2.78
2969 2979 7.937394 CAGGAAAGTTATATATTCCCTCCGTTT 59.063 37.037 9.17 0.00 42.93 3.60
2970 2980 7.291651 TCAGGAAAGTTATATATTCCCTCCGTT 59.708 37.037 9.17 0.00 42.93 4.44
2971 2981 6.785963 TCAGGAAAGTTATATATTCCCTCCGT 59.214 38.462 9.17 0.00 42.93 4.69
2972 2982 7.241042 TCAGGAAAGTTATATATTCCCTCCG 57.759 40.000 9.17 0.00 42.93 4.63
2973 2983 9.862149 TTTTCAGGAAAGTTATATATTCCCTCC 57.138 33.333 9.17 1.71 42.93 4.30
3024 3034 1.064463 CATATGGTCCAACAGGCAGGT 60.064 52.381 0.00 0.00 0.00 4.00
3105 3128 7.953158 ACGTTCATCATAATGAGGTTCTATG 57.047 36.000 0.00 0.00 42.72 2.23
3106 3129 9.078990 TCTACGTTCATCATAATGAGGTTCTAT 57.921 33.333 0.00 0.00 42.72 1.98
3107 3130 8.459911 TCTACGTTCATCATAATGAGGTTCTA 57.540 34.615 0.00 0.00 42.72 2.10
3108 3131 7.348080 TCTACGTTCATCATAATGAGGTTCT 57.652 36.000 0.00 0.00 42.72 3.01
3109 3132 8.594881 ATTCTACGTTCATCATAATGAGGTTC 57.405 34.615 0.00 0.00 42.72 3.62
3110 3133 8.830580 CAATTCTACGTTCATCATAATGAGGTT 58.169 33.333 0.00 0.00 42.72 3.50
3111 3134 7.442364 CCAATTCTACGTTCATCATAATGAGGT 59.558 37.037 0.00 0.88 42.72 3.85
3112 3135 7.657354 TCCAATTCTACGTTCATCATAATGAGG 59.343 37.037 0.00 0.00 42.72 3.86
3113 3136 8.593492 TCCAATTCTACGTTCATCATAATGAG 57.407 34.615 0.00 0.00 42.72 2.90
3114 3137 8.956533 TTCCAATTCTACGTTCATCATAATGA 57.043 30.769 0.00 0.00 40.18 2.57
3115 3138 8.830580 ACTTCCAATTCTACGTTCATCATAATG 58.169 33.333 0.00 0.00 0.00 1.90
3116 3139 8.964476 ACTTCCAATTCTACGTTCATCATAAT 57.036 30.769 0.00 0.00 0.00 1.28
3117 3140 8.786826 AACTTCCAATTCTACGTTCATCATAA 57.213 30.769 0.00 0.00 0.00 1.90
3233 3256 1.291906 GGACCACAAATTTGGCCGG 59.708 57.895 21.74 19.23 40.77 6.13
3248 3271 4.154347 CTCCCAGCAGAGCGGGAC 62.154 72.222 9.76 0.00 46.43 4.46
3289 3312 9.897744 CAAAGACAGAGCTTGAATTAATTGTAA 57.102 29.630 5.17 0.24 0.00 2.41
3291 3314 7.945134 ACAAAGACAGAGCTTGAATTAATTGT 58.055 30.769 5.17 0.00 0.00 2.71
3292 3315 8.295288 AGACAAAGACAGAGCTTGAATTAATTG 58.705 33.333 5.17 0.00 0.00 2.32
3385 3408 2.813754 TGAGCACTTGCACATTACCTTC 59.186 45.455 3.62 0.00 45.16 3.46
3386 3409 2.862541 TGAGCACTTGCACATTACCTT 58.137 42.857 3.62 0.00 45.16 3.50
3387 3410 2.566833 TGAGCACTTGCACATTACCT 57.433 45.000 3.62 0.00 45.16 3.08
3393 3416 2.486592 CAGATTCATGAGCACTTGCACA 59.513 45.455 3.75 3.75 45.04 4.57
3397 3436 4.672024 GCAGAACAGATTCATGAGCACTTG 60.672 45.833 0.00 0.00 37.29 3.16
3445 3484 9.270640 CCATTTTCAGGTCATTCACAAAAATAA 57.729 29.630 0.00 0.00 29.18 1.40
3446 3485 8.646004 TCCATTTTCAGGTCATTCACAAAAATA 58.354 29.630 0.00 0.00 29.18 1.40
3447 3486 7.507829 TCCATTTTCAGGTCATTCACAAAAAT 58.492 30.769 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.