>input_sequence_48520
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-------------------------------------------------ATGCCGCCCAGGCCGGCGAGGCGGGTGTTCC
AGTACATCTCCTCGCCCCGCAGGCCGCCGCCGTCCCCGCTGCCCGCGGCCCCCGCCGCCGGGGAGGCCACGGCCTCCGAG
GCCGACGCCGACTCGGTCTACCACATCGTGACGGCCGCGCCCACGCCGTCGGCCATGGAGTCCGCGCTCTCCGCCTCCGC
CGTCCCTCTCTCGCCGCCGCTCCTCGACCTCGTCCTCCGCCGCTTCCGCTTCGCCCACGGGGACCCGCTCCGCGCGCTCT
CGCTCCTCTCGCTCGCCGCCGACCGCTGCGGCGTCGCGCCCTCCCCCTTCGCGCTCGACACGGCCCTCTACGTGCTCGGC
CGCGCCCGCCGCTTCTCCCACATGTGGGACCTCGTCCAGTCCATCCACCGGCTCTGCCCCGACGCCATCACCGCGCGCAC
CGCCATGGTCGTCCTCGGCCGCGTCGCCAAGATCTGCTCCGTCCGCGAGACCGTCGCCTCCTTCCGCCGCCTCTTGCGGC
TCTTCCGCGGCCGCGAGGGCACCGAGTCGGCCGACCTCTTCAACGCGCTGCTCCGCACGCTCTGCCAGGAGAAGAGCATG
TCCGACGCGCGCAACGTCTACCACGCGCACAAGCACGAGTTCCAGGTGAACCGCCATACCTTCAACATCCTGCTCTCCGG
GTGGAAGTCCTCCGAGGATGCCGATGCGTTCTTCGCAGAGATGCGAGAGCACGGGATTGATCCTGACTTGGTCACCTACA
ACTCTTTGATTGATTGCCACTGCAAGAACCATGGCGTGGAGAAGGCCTATAAGCTGCTCGATGAAATGCGTGGGAATGAA
ATTGCTCCCGATGTGATCACCTATACGAGTTTGATTGGCGGATTGGGACTGGTTGGCCAGCCTGACAAGGCTAGAGACCT
GCTGAAGGAGATGCGTGAGCTTGGATGTCACCCGGATGTGGCGGCGTACAATGCCACAATACGGAACTTTGTTATAGCAA
AGAGGCTTGGTGATGCGTTTGCGTTGATGGACGAAATGGCCTCAAGGGGACTGATGCCGAATGCCACGACATATAACCTT
TTCTTCCGGTTCTACTACTGGGCGTACGATATTGGTAGCACGTGGCTGTTGTATGAGCGGATGCGGTCTGAAAGATGCTT
CCCCAACACGCAATCTTGCATGTTTATTATCAGGTTATGTCATCGGCATGGTAAGGTGGCAGAAGCACTAGAGCTGTGGG
GCGATATGGTCGAGAACGGGTTTGGATCATTCACCTTGGTGTCAGATGTTTTGTTTGACCTGTTATGTGATGAGGGAAAG
CTGGAGGAGGCTGAGAGGTGCTTCCATCAAATTACTGATTTGGGGCAGAAACCCAGCAGCATTTCATTTAGAAGAATCAA
GATACTAATGCAGCTTGCCAACCGGGAAGAATCTATTGCCGGGTTAACTGAGAAAATGGCTCGGTTTGGCCGGCTGCTGC
CTGAGGATTGCCAAAGAGTTCGTCCCCCTGCTGAAACCACACCCGATGGAGATGATACTGAAATAATAATAGCAACTTAG
--------------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G254000
AGAATGTAAGGTTCTATCGTACACTCCTACTTCGTCCAATATTACGCCCGTTCCCGCCCCCTTTCTCCTTGTATTAATTT
TTTCCTCCCATATCTGGTTTTTTCCATCACCCTGAAGCCACCTCAACTACCCCACCACATATTTACTTATCATACCTTCT
TTGGTACCCCCCCGGTCCTTTTTACTTAGTATATAAGATTTGTCTACAGTCAAACTTTATAAAATTTGACCAACTTTATA
GAAAAAAAATATCAACATTCACTATACGAAATCAATACCATTAGATGCATCATGAATTTAATTTTCATATTGTATAACTT
TAGTATTGTAGACGTTGATATTTTTCCATATAAATATGGTCAAACTGTACGAAGTTTGACTTCGGACAAATATGCGTAGT
AAAAAGAACTGAAGGGAGTAAATTAAGAAGTGCTTACAAA-CAACTGTTCACTAATTACATAGTCCTATTTATTAACACA
ATTAAAATTAATATGAGCAGGTAAAGCACGGGTTAACCTACTATTATTTTTACTCCCCGGCAATGAAATCACGTGAAAAC
ATGAAAGTAGTTCATTTAGCATAGATTTTCTAGTGCAGATGGCTCGCAGATTTTCTTAAAGACAAAGATTTTTTTTTTAG
ACAATCTTAAAGACTCTTAAAGACAAAGATGGTTTGCGGCCATGCGTGGCGTCGGCCTTTTTTGTTAGGGAATGTTTGCA
AGAGACTGGACGTTTGTTGTGGTATTGCGTCGTAGTGCTCGTAGCCCAATGGCCCATGTGAGGGGCCAAGAATGGCACAG
CACGAGCCACGAAGTGAAT--------TCCACTCTAGCCCATCACACTATTCGACCCGGCCCGCTTCTGCTGCGACCGCA
CTGCACGGACCATCCCTCTTTCCATTCCCCTTCCAAGCTGCAGGCTGCAGCCTCCATGCCGCTCGCCCCGCGCCGACGCC
GCCAAAACCCTCCCCAAAACCTCCGACAGACGCCGCCCACCTCCCAGGGATGCCGCCCAGGCCGGCGAGGCGGGTGTTCC
AGTACATCTCCTCGCCCCGCAGGCCGCCGCCGTCCCCGCTGCCCGCGGCCCCCGCCGCCGGGGAGGCCACGGCCTCCGAG
GCCGACGCCGACTCGGTCTACCACATCGTGACGGCCGCGCCCACGCCGTCGGCCATGGAGTCCGCGCTCTCCGCCTCCGC
CGTCCCTCTCTCGCCGCCGCTCCTCGACCTCGTCCTCCGCCGCTTCCGCTTCGCCCACGGGGACCCGCTCCGCGCGCTCT
CGCTCCTCTCGCTCGCCGCCGACCGCTGCGGCGTCGCGCCCTCCCCCTTCGCGCTCGACACGGCCCTCTACGTGCTCGGC
CGCGCCCGCCGCTTCTCCCACATGTGGGACCTCGTCCAGTCCATCCACCGGCTCTGCCCCGACGCCATCACCGCGCGCAC
CGCCATGGTCGTCCTCGGCCGCGTCGCCAAGATCTGCTCCGTCCGCGAGACCGTCGCCTCCTTCCGCCGCCTCTTGCGGC
TCTTCCGCGGCCGCGAGGGCACCGAGTCGGCCGACCTCTTCAACGCGCTGCTCCGCACGCTCTGCCAGGAGAAGAGCATG
TCCGACGCGCGCAACGTCTACCACGCGCACAAGCACGAGTTCCAGGTGAACCGCCATACCTTCAACATCCTGCTCTCCGG
GTGGAAGTCCTCCGAGGATGCCGATGCGTTCTTCGCAGAGATGCGAGAGCACGGGATTGATCCTGACTTGGTCACCTACA
ACTCTTTGATTGATTGCCACTGCAAGAACCATGGCGTGGAGAAGGCCTATAAGCTGCTCGATGAAATGCGTGGGAATGAA
ATTGCTCCCGATGTGATCACCTATACGAGTTTGATTGGCGGATTGGGACTGGTTGGCCAGCCTGACAAGGCTAGAGACCT
GCTGAAGGAGATGCGTGAGCTTGGATGTCACCCGGATGTGGCGGCGTACAATGCCACAATACGGAACTTTGTTATAGCAA
AGAGGCTTGGTGATGCGTTTGCGTTGATGGACGAAATGGCCTCAAGGGGACTGATGCCGAATGCCACGACATATAACCTT
TTCTTCCGGTTCTACTACTGGGCGTACGATATTGGTAGCACGTGGCTGTTGTATGAGCGGATGCGGTCTGAAAGATGCTT
CCCCAACACGCAATCTTGCATGTTTATTATCAGGTTATGTCATCGGCATGGTAAGGTGGCAGAAGCACTAGAGCTGTGGG
GCGATATGGTCGAGAACGGGTTTGGATCATTCACCTTGGTGTCAGATGTTTTGTTTGACCTGTTATGTGATGAGGGAAAG
CTGGAGGAGGCTGAGAGGTGCTTCCATCAAATTACTGATTTGGGGCAGAAACCCAGCAGCATTTCATTTAGAAGAATCAA
GATACTAATGCAGCTTGCCAACCGGGAAGAATCTATTGCCGGGTTAACTGAGAAAATGGCTCGGTTTGGCCGGCTGCTGC
CTGAGGATTGCCAAAGAGTTCGTCCCCCTGCTGAAACCACACCCGATGGAGATGATACTGAAATAATAATAGCAACTTAG
CATGTTATTCATACGACAGGGAGCATCATTTGATGACCACAAATTTGGTTGACCAGGAAATTGTTGAATTGGTTCTGAAG
AGTTCATTGTACTATTATTATCCTGTGGAGGTAAACCTTCTAGATTTCTGATTTCATATGAAGGTATTGGTTAGTCGTTT
TGCTTCCATCATTTCTGATGACAATATTGCCTCTCCAAACAGGTATGAACAATTCGGGATGTTATTGAGAGACAATCGAT
GTATATTGTCAGATTATTGTCATTATTAATACTTCCCCTGTTCCTAAATATAAGTCTTTTTTAGAGATTCCACTATGGAC
TACATACGGAGCAAAATGAGTGAATCTACACCCTAAAATGTGTCTATATACATCCGAATGTAGTTTGTATTGAAATCCCT
AGAAAGACTTATATTTAGAAACGGAGGGAATATATAACTTTCCTGAAAAAATTCATACAGTGGGGGACGTCTAACCTGCC
TGTTGGACCATATGGTATTACACCACTGTCCAATCTCTCATATGAAATTGAAACTGCATATGGTATACCAACG-------
------TCATAGAACCTCATTATGATGAACGTAGAATTGGAAGTTTGGAACTACTCCCTCAATTCCGATTATTTGATGTG
TTACCAAATTTTGCAAAGACCAAGGAAATCCTGCGATTAGGAGATTTGGAGGATGCCGGCCAAATTTGTGGTCCCGCTCT
GCTGGGAGTCTCATTGTATAAAATGTTTTTTTTACAATTAATTCAAGCTCTGTCTTTGTCTGAAATAAAAGTGTGAAGTT
ACAGGGAAGGAAAGCAAACACGTATATTGTCTCTCGATTTATCGCATGAAGGTAAT----------------GTGCAAGT
GCTCATGAATCTGTTCTGCAACAGAAGATGTGGCCTTTTTATTTTATTTTTGTGAATGACCTGAAAATGGAAGTATTAAC
TTGCTGATGTGAATAGCCAGTAGCGCACTTAGGGACTGAATGAATGTGCATCGCTATACATGGTTAGCT
>chr4B_419
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------------------TAAATAAATAAGTGCTTACAAAACAAGTGTTCACTAAATACATAATCCTATTTATTTACACG
TAT-AAATTAATATGATCAGGTAAATCACGGGTTACCTATTAGAATATTTTACTCCTCGGCAATGAAATCACGTGAAAAC
ATGAAAGTAGTTCATGTTGCAAAGATTTTCCAATGCAGATGTCTCGCAGCTTTTCGTAAAGAC----ATTTTTTTTATAG
ACAATCTTAAAGACAAAGATGGTGTGCC---GTGTGCGGCCATGCGTAGTGTCGGCCTTTTTTGTTACGGAATGTTTGCA
AGAGACTGGACGTC-GTTGTGGTATTGGGTCGTAGTGGTCGTAGCCCAATGGCCCAAGTGAG------------------
---GAGCCACGAAGTGAATACTCAGATTCCACTCTAGCCCATCACACTGTTCGAGCCGGCCCGCTCCTGCTGCGACCGCA
CGGCACGCACCATCCCTCTTTGCATTCCCCTTCCAAGCTGCAGGCTGCAGCCTCCATGCCGCTCGCCCCGCGCCGACGCC
GCCAAAACCCTCCCCAAAACCTCCGACAAACGCCGCCCACCTCCCAGAGATGCCGCCCAAGCCGGCGAGGCGGGTGTTCC
AGTACATCTCCTCGCCCCGGAGGCCGCCGCCGTCCCCGCTGCCCGCGGCCCCCGCCGCCGGCGAGGCCACGGCCTCCGAG
GCCGACGCCGACTCGGTCTACCAAATCGTCACGGCCGCGCCCACGCCGTCGGCCATGGAGTCCGCGCTCTCCGCCTCCGC
CGTCCCGCTCTCGGCGCCGCTCCTCGACCTCGTCCTCCGCCGCTTCCGCTTCGCCCACGGCGATCCACTCCGCGCGCTCT
CGCTCCTCTCGCTCGCCGCCGACCGCTGCGGCGTCGCGCCCTCCCCCTACGCGCTCGACACGGCCCTCTACGTGCTCGGC
CGCGCCCGCCGCTTCTCCCACATGTGGGACCTAGTCCAGTCCATCCACCGGCTCTGCCCCGACTCCATCACCGCGCGCAC
CGCCATGGTCGTCCTCGGCCGCGTCGCCAAGATCTGCTCCGTTCGCGAGACCGTTGCCTCCTTCCGCCGCCTCTTGCGGC
TCTTCCGCGGCCGCGAGGGCACCGAGTCGGCCGACCTCTTCAACGCGCTGCTCCGCACGCTCTGCCAGGAGAAGAGCATG
TCCGACGCGCGCAACGTCTACCACGCGCACAAGCACGAGTTCCAGGTGAACCGCCATACCTTCAACATCCTGCTCTCTGG
GTGGAAGTCTTCGGAGGATGCCGATGCGTTCTTCGCAGAGATGCGAGAGCACGGCATTGATCCTGACTTGGTCACCTACA
ACTCTTTGATTGATTGCCACTGCAAGAACCGAGGCGTGGAGAAGGCCTATAAGCTGCTCGATGAAATGCGGGGGAATGAA
ATTGCCCCCGATGTCATCACCTATACGAGTTTGATTGGCGGATTGGGACTTGTTGGCCAGCCTGACAAGGCTAGAGACCT
GCTGAAGGAGATGCGTGAGCTCGGATGTCACCCGGATGTGGCGGCGTACAATGCCACAATACGGAACTTTGTTATAGCGA
AGAGGCTTGGTGATGCGTTTGCGTTGACGGACGAAATGGCATCGAGGGGACTGATGCCGAATGCAACGACATATAACCTT
TTCTTCCGGTTCTATTACTGGGCGTATGACATTGGTAGCGCGTGGCTGTTGTATGAGCGGATGCGGTCTGAAAGATGCTT
CCCCAACACACAGTCTTGCATGTTTATCATTAGGTTATGTCATCGGCATGGTAAGGTGGCAGAAGCACTAGAGCTGTGGG
GTGATATGGTCGAGAACGGGTTTGGGTCATTCACCTTGGTGTCAGATGTTTTGTTTGACCTGTTATGTGACGAGGGGAAG
CTGGAGGAGGCTGAGAGGTGCTTCCATCAAATTACTGATTTGGGGCAGAAACCCAGCAGCGTTTCATTTAGAAGAATCAA
GATACTTATGCAGCTTGCCAACCGGGAAGAATCTATTGCCGGGTTAACTGAGAAAATGGCTCGGTTTGGACGGCTGCCGC
CTGAGGATTGCCAAAGAGTTCGTCACCCTGCTGAAAGCACACCCGATGGAGATGATACTGATGTAATAATAGCAACTTAG
CATGTTATTCATATGACGGGGAACATTATTTGATGAGCACAAATTTGGTTGACCAGGGAAATAGTTGAATGCTTCTGAAG
AGTTCATTGTACTATTAT---CCTGTGGAGGTAAACCTTCTAGATTTCTGATTTCATATGAAGATATTGGTTAGTCGTTT
TGCTTTCATCATTTCTGATGACAATATTGCCTCTCCAAACAGGTATGAACAATTCAGGATGTTATTGAGAGACAATCAAT
GTATATTGTCAGATTATTGTCATTATT-----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATATATAACTTTCCTGAAAAAATTCATACAGTGGGGGACGTCTAGCCTGCC
TGTTGGACCACATGATATTACACCACTGTCCAATCTCTCATATGAAATTGAAACTGCATATGGTGTACCAACG-------
------T-------------TATGACGAGCGTAGAATTGGAAGTTTGGAACTACTCCCTCAATTCCGATTATTTGATGTG
TTACCAAATTTTGCAAAGACCAAGGAAATCCTGCGATTAGGAGATTTGGAGGATGTCAGCCAAATTTGTCATCCCGCTCT
GCTGGGAGTCTCATTGTATAAAATGTTTTTTAT--AATTAATTCAAGCTCTATCTTTGTCTGAAATAAAAGTGTGAAATT
AGAGGGAAGGAAAGCAAACACTTTG-TTGTCTCTCGATTTATCACTTTGGAG--------------------------GT
GCTCATGAACCTGTTCTGCAACAGAAGATGTGACCTTTTTATT---TTTTTGTGAGTGACCTGAAAATGGAAGTATTAAC
TTGCTGATATGAATAGCCAGTAGCGCACTTAGGGACTGAATGAATGTGCATCGCTCTACATGGTTAGCT
>chr4A_847
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-------------------------------------------------------CCGGCCCGCTCCTGCTGCGACCGCA
TTGCACG----ATCCCTCTTTGCATTCCCCTTCCAAGCTGCAGGCTGCAGCCTCCATGCCGCTCGCTCCGCGCCGACGCC
GCCAAAACCCTCCCCAAAACCTCCGACAAGCGCCGCCCACCTCCCAGAGATGCCGCCCAAGCCGGCGAGGCGGGTGTTCC
AGTACATCTCCTCGCCCCGCAGGCTGCCGCCGTCCCTGCTGCCCGCGGCCCCCGCCGCCGGCGAGGCCACGGCCTCCGAG
GCCGACGCCGACTCGGTCTACCACATCGTGACGGCCGCGCCCACGCCGTCGGCCATGGAGTCCGCGCTCTCCGCCTCCGC
CGTCCCGCTCTCGGCGCCGCTCCTCGATCTCGTCCTCCGCCGCTTCCGCTTCGCCCACGGCGACCCGCTCCGCGCGCTCT
CGCTCCTCTCGCTCGCCGCCGACCGCTGCGGCGTCGCGCCCTCCCCCTTCGCGCTCGACACGGCCCTCTACGTGCTCGGC
CGCGCCCGCCGCTTCTCCCACATGTGGGACCTCGTCCAGTCCGTCCACCGCCTCTGCCCCGACGCCATCACCGCGCGCAC
CGCCATGGTCGTCCTCGGCCGCGTCGCCAAGATCTGCTCCGTCCGCGAGACCGTCGCCTCCTTCCGCCGCCTCTTGCGGC
TCTTCCGCGGCCGCGAGAGCAGCGAGTCGGCCGACCTCTTCAACGCGCTGCTCCGCACGCTCTGCCAGGAGAAGAGCATG
TCCGACGCGCGCAACGTCTACCACGCGCACAAGCACGAGTTCCAGGTGAACCGCCATACCTTCAACATCCTGCTCTCCGG
GTGGAAGTCTTCGGAGGATGCCGATGCGTTCTTCGCAGAGATGCGAGAGCACGGCATTGATCCTGACTTGGTCACCTACA
ACTCTTTGATTGATTGCCACTGCAAGAACCGAGGCGTGGAGAAGGCCTATAAGCTGCTCGATGAAATGCGGGGGAATGAA
ATTGCCCCCGATGTGATCACCTATACGAGTTTGATTGGCGGATTGGGACTGGTTGGCCAGCCTGACAAGGCTAGAGACCT
GCTGAAGGAGATGCGTGAGCTCGGATGTCACCCGGATGTGGCGGCGTACAATGCCACTATACGGAACTTTGTTATAGCAA
AGAGGCTTGGTGATGCGTTTGCATTGATGGACGAAATGGCCTCAAGGGGGCTGATGCCGAATGCCACGACGTATAACCTT
TTCTTCCGGTTCTATTACTGGGCGTATGATATTGGTAGCGCGTGGCTGTTGTATGAGAGAATGCGGTCTGAAAGATGTTT
CCCCAACACACAGTCTTGTATGTTTATCATCAGGTTATGTCATCGGCATGGTAAGGTGGCAGAAGCACTAGAGCTGTGGG
GAGATATGATCGAGAACGGGTTTGGGTCATTCACCTTGGTGTCAGATGTTTTGTTTGACCTGTTATGTGATGAGGGGAAG
CTGGAGGAGGCTGAGAGGTGCTTCCATCAAATTACTGATTTGGGGCAGAAACCCAGCAGTGTTTCATTTAGAAGAATCAA
GATACTTATGCAGCTTGCCAAACAGGAAGAATCTATTGCCGGGTTAACTGAGAAAATGGCTCGGTTTGGACGGCTGCCGC
CTGAGGATTGCCAAAGAGTTCGTCACCCTGCTGAAAGCACACCCGATGGAGATGATACTGATGTAATAATAGCAACTTAG
CATGTTATTCATATGACGGGGAACATTCTTTGATGAGCACAAATTTGGTTGACCAGGGAAATAGTTGAATGGTTCTGAAG
AGTTCATTGTACTATTAT---CCTGTGGAGGTAAACCTTCTGGATTTCTGATTTCATATGAAGGTATTGGTTAGTCATTT
TGCTTCCATCATTTCTGATGACAATATTGCCTCTTCAAACAGGTATGGAAAATTCAGGATGTTATTGAGAGACAATCGAT
ATATAGTGTCAGATTATTGTCACCATT-----------------------------------------------------
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----------------------------AATATATAACTTTCCTGAAAACATTCATACAGTGGGGGACGTCTAGCCTGCC
TGTTGGACCATATGGTATTACACCACTGTCCAATCTCTCATATGAAATTGAAACTCCATATGGTATACCAACGTCATAGA
GCCTCAT-------------TATGATGAACGTAGAATTGGAAGTTTGGAACTACTCCCTCAATTCCGATTATCTGATGTG
TTACCAAATTTTGCAAAGACCAAGGAAATCCTGTGATTAGGAGATTTGGAGGATGTCGTTGTCGT--------CCGCTCT
GCTGGGAGTCTCATTGTATAAAATGATATTTAT--AATTAATTCAAGCTCTGTCTTTGTCTGAAATATAAGTGTGAAGTT
ACAGGGAAGGAAAGCAAACACTTATCTTGTCTCTTGATTTATCGCATTCTGAGTTAATTGCATGAAGGTAACGTGGAAGT
GCTCATGAACCTGTTTTGCAACAGAAGATGTGACCTTT--------TTTTTGTGAATGCCCTGAAAATGGAAGTATTAAC
TTGCTGATGTGAATAGCCAGTAGCGCACTTAGGGACTGAATGAATGTGCATCGCTATACATGGTTAGCT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-----S--S-----------------S----------S------S-----------S----S
SS-S------------S--------S---------S-SSSSSSSSSS---------S-----------------------
---------------S-S---S--------S-S--------S-------S-----S-------SSSS---------S---
--------------SSSS-SS-SSSSSSSSS--S-------------S-S-----------------S------------
-------------SS------------S---------S------------------S-----SSSSSSSSSSSSSSSSSS
SSS---------------------------------------------S-----S----------S--------------
-------S-------------S----------------------------------------------------------
----------------------------S------------------S-----------S--------------------
-------------------------------------------------------------S------------------
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------S------S----------------------------------------------S-------------------
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---------S--S-----------------------------------------S-------------------------
------------------------------SS--------------------------------------S---------
-----S--------------------------------------------------------------------------
---------------------S----------------------------------------------------------
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--------------S-----------S------------S----------------------------------------
---------S--S--------------S----------------------------------------------------
-S-----------------------S--------------------------------------------------S---
------------------------------------------------------------S-------------------
------S--------------------------------------------------------------S-------S--
------------------------S-----------S------------------------SS-----------------
-------------S---S----S---S---------S--------------------S--S-SS-SS-S-----------
------------------SSS-----------------------------------------------------------
-------------------------------------------------------S------------------------
---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------S------
--------------------------------------------------------------------------------
-------SSSSSSSSSSSSS------------------------------------------------------------
-------------------------------------------------------S-------------SS---------
-------------------------------S-SS---------------------------------------------
---------------------S---S---------------------SSS--SSSS-------------------S----
---------S----------------------S----------SSS----------------------------------
---------------------------------------------------------------------
>forward_793
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-----------------------------------------------------CCATGTGAGGGGCCAAGAAT-------
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>reverse_1792
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-------------------------------TGGCGTGGAGAAGGCCTATA-----------------------------
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>forward_989
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---------CTCCCCAAAACCTCCGACAG---------------------------------------------------
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>reverse_2478
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-----------------------------------------------------------------------------TGC
CTGAGGATTGCCAAAGA---------------------------------------------------------------
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>forward_2470
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--------------------------------------------------AGAAAATGGCTCGGTTTGGC----------
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>reverse_3416
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-------------------------------------------------------TGTGCAAGTGCTCATGAATCTG---
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