Multiple sequence alignment - TraesCS4D01G249000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4D01G249000
chr4D
100.000
2243
0
0
1
2243
418359174
418356932
0.000000e+00
4143.0
1
TraesCS4D01G249000
chr4D
91.111
90
8
0
1001
1090
39353766
39353855
3.030000e-24
122.0
2
TraesCS4D01G249000
chr4D
91.765
85
7
0
1006
1090
39394531
39394447
3.910000e-23
119.0
3
TraesCS4D01G249000
chr4D
87.755
98
7
4
1378
1474
418357447
418357354
2.360000e-20
110.0
4
TraesCS4D01G249000
chr4D
87.755
98
7
4
1728
1821
418357797
418357701
2.360000e-20
110.0
5
TraesCS4D01G249000
chr4B
90.200
1500
84
34
225
1677
514586230
514584747
0.000000e+00
1897.0
6
TraesCS4D01G249000
chr4B
79.878
492
23
29
1758
2218
514584601
514584155
7.840000e-75
291.0
7
TraesCS4D01G249000
chr4B
92.941
85
6
0
1006
1090
57806349
57806265
8.410000e-25
124.0
8
TraesCS4D01G249000
chr4A
88.849
1103
79
17
493
1571
46560536
46561618
0.000000e+00
1315.0
9
TraesCS4D01G249000
chr4A
83.085
201
18
9
2018
2215
46562356
46562543
3.830000e-38
169.0
10
TraesCS4D01G249000
chr4A
84.962
133
17
3
1007
1136
560964962
560965094
5.030000e-27
132.0
11
TraesCS4D01G249000
chr4A
94.118
85
5
0
1006
1090
560951674
560951758
1.810000e-26
130.0
12
TraesCS4D01G249000
chr4A
90.789
76
7
0
1728
1803
46561436
46561511
3.940000e-18
102.0
13
TraesCS4D01G249000
chr7B
88.340
952
56
27
706
1624
469741916
469742845
0.000000e+00
1092.0
14
TraesCS4D01G249000
chr7B
87.106
349
23
4
327
670
469741314
469741645
2.100000e-100
375.0
15
TraesCS4D01G249000
chr7B
94.595
111
6
0
1823
1933
469742935
469743045
2.960000e-39
172.0
16
TraesCS4D01G249000
chr7B
84.343
198
6
11
2050
2243
469795773
469795949
1.070000e-38
171.0
17
TraesCS4D01G249000
chr7B
88.776
98
7
3
1728
1821
469742586
469742683
1.410000e-22
117.0
18
TraesCS4D01G249000
chr7B
100.000
35
0
0
1758
1792
469742849
469742883
5.170000e-07
65.8
19
TraesCS4D01G249000
chr1D
86.813
182
23
1
1
181
366007862
366008043
3.780000e-48
202.0
20
TraesCS4D01G249000
chr3D
85.870
184
26
0
1
184
154599068
154598885
1.760000e-46
196.0
21
TraesCS4D01G249000
chr3D
83.069
189
29
3
1
187
384560551
384560738
3.830000e-38
169.0
22
TraesCS4D01G249000
chr3B
85.475
179
26
0
1
179
427592853
427592675
1.060000e-43
187.0
23
TraesCS4D01G249000
chr1B
84.699
183
26
2
1
183
501358285
501358105
4.920000e-42
182.0
24
TraesCS4D01G249000
chr7D
82.967
182
31
0
1
182
41991226
41991045
4.960000e-37
165.0
25
TraesCS4D01G249000
chr7D
83.041
171
27
2
4
173
583052893
583053062
1.070000e-33
154.0
26
TraesCS4D01G249000
chr7A
82.888
187
28
4
1
186
35421464
35421281
4.960000e-37
165.0
27
TraesCS4D01G249000
chr5B
83.616
177
26
2
1
175
91898922
91899097
1.780000e-36
163.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4D01G249000
chr4D
418356932
418359174
2242
True
1454.333333
4143
91.836667
1
2243
3
chr4D.!!$R2
2242
1
TraesCS4D01G249000
chr4B
514584155
514586230
2075
True
1094.000000
1897
85.039000
225
2218
2
chr4B.!!$R2
1993
2
TraesCS4D01G249000
chr4A
46560536
46562543
2007
False
528.666667
1315
87.574333
493
2215
3
chr4A.!!$F3
1722
3
TraesCS4D01G249000
chr7B
469741314
469743045
1731
False
364.360000
1092
91.763400
327
1933
5
chr7B.!!$F2
1606
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
87
88
0.033504
TGTCCGCAGTTTGAGAGGTC
59.966
55.0
0.0
0.0
0.0
3.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1686
1994
0.034477
GGACGATGGAATGTGGGGTT
60.034
55.0
0.0
0.0
0.0
4.11
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
25
26
3.000819
CGCCCCATATCCGCCCTA
61.001
66.667
0.00
0.00
0.00
3.53
26
27
2.367202
CGCCCCATATCCGCCCTAT
61.367
63.158
0.00
0.00
0.00
2.57
27
28
1.046472
CGCCCCATATCCGCCCTATA
61.046
60.000
0.00
0.00
0.00
1.31
28
29
1.435256
GCCCCATATCCGCCCTATAT
58.565
55.000
0.00
0.00
0.00
0.86
29
30
1.774856
GCCCCATATCCGCCCTATATT
59.225
52.381
0.00
0.00
0.00
1.28
30
31
2.174854
GCCCCATATCCGCCCTATATTT
59.825
50.000
0.00
0.00
0.00
1.40
31
32
3.820557
CCCCATATCCGCCCTATATTTG
58.179
50.000
0.00
0.00
0.00
2.32
32
33
3.435026
CCCCATATCCGCCCTATATTTGG
60.435
52.174
0.00
0.00
0.00
3.28
33
34
3.202151
CCCATATCCGCCCTATATTTGGT
59.798
47.826
0.00
0.00
0.00
3.67
34
35
4.325030
CCCATATCCGCCCTATATTTGGTT
60.325
45.833
0.00
0.00
0.00
3.67
35
36
5.261216
CCATATCCGCCCTATATTTGGTTT
58.739
41.667
0.00
0.00
0.00
3.27
36
37
5.125417
CCATATCCGCCCTATATTTGGTTTG
59.875
44.000
0.00
0.00
0.00
2.93
37
38
2.938838
TCCGCCCTATATTTGGTTTGG
58.061
47.619
0.00
0.00
0.00
3.28
38
39
2.510382
TCCGCCCTATATTTGGTTTGGA
59.490
45.455
0.00
0.00
0.00
3.53
39
40
3.139397
TCCGCCCTATATTTGGTTTGGAT
59.861
43.478
0.00
0.00
0.00
3.41
40
41
4.351407
TCCGCCCTATATTTGGTTTGGATA
59.649
41.667
0.00
0.00
0.00
2.59
41
42
4.457949
CCGCCCTATATTTGGTTTGGATAC
59.542
45.833
0.00
0.00
0.00
2.24
42
43
4.153475
CGCCCTATATTTGGTTTGGATACG
59.847
45.833
0.00
0.00
42.51
3.06
43
44
5.310451
GCCCTATATTTGGTTTGGATACGA
58.690
41.667
0.00
0.00
42.51
3.43
44
45
5.411669
GCCCTATATTTGGTTTGGATACGAG
59.588
44.000
0.00
0.00
42.51
4.18
45
46
5.938125
CCCTATATTTGGTTTGGATACGAGG
59.062
44.000
0.00
0.00
42.51
4.63
46
47
6.239772
CCCTATATTTGGTTTGGATACGAGGA
60.240
42.308
0.00
0.00
42.51
3.71
47
48
6.874134
CCTATATTTGGTTTGGATACGAGGAG
59.126
42.308
0.00
0.00
42.51
3.69
48
49
4.569719
ATTTGGTTTGGATACGAGGAGT
57.430
40.909
0.00
0.00
42.51
3.85
49
50
3.328382
TTGGTTTGGATACGAGGAGTG
57.672
47.619
0.00
0.00
42.51
3.51
50
51
2.253610
TGGTTTGGATACGAGGAGTGT
58.746
47.619
0.00
0.00
42.51
3.55
51
52
2.635915
TGGTTTGGATACGAGGAGTGTT
59.364
45.455
0.00
0.00
42.51
3.32
52
53
3.000727
GGTTTGGATACGAGGAGTGTTG
58.999
50.000
0.00
0.00
42.51
3.33
53
54
3.000727
GTTTGGATACGAGGAGTGTTGG
58.999
50.000
0.00
0.00
42.51
3.77
54
55
1.933021
TGGATACGAGGAGTGTTGGT
58.067
50.000
0.00
0.00
42.51
3.67
55
56
1.822990
TGGATACGAGGAGTGTTGGTC
59.177
52.381
0.00
0.00
42.51
4.02
56
57
1.822990
GGATACGAGGAGTGTTGGTCA
59.177
52.381
0.00
0.00
0.00
4.02
57
58
2.159226
GGATACGAGGAGTGTTGGTCAG
60.159
54.545
0.00
0.00
0.00
3.51
58
59
0.601558
TACGAGGAGTGTTGGTCAGC
59.398
55.000
0.00
0.00
0.00
4.26
59
60
1.374758
CGAGGAGTGTTGGTCAGCC
60.375
63.158
0.00
0.00
0.00
4.85
60
61
1.003233
GAGGAGTGTTGGTCAGCCC
60.003
63.158
0.00
0.00
0.00
5.19
61
62
2.358737
GGAGTGTTGGTCAGCCCG
60.359
66.667
0.00
0.00
35.15
6.13
62
63
2.741092
GAGTGTTGGTCAGCCCGA
59.259
61.111
0.00
0.00
35.15
5.14
63
64
1.374758
GAGTGTTGGTCAGCCCGAG
60.375
63.158
0.00
0.00
35.15
4.63
64
65
3.050275
GTGTTGGTCAGCCCGAGC
61.050
66.667
0.00
0.00
42.75
5.03
65
66
4.680237
TGTTGGTCAGCCCGAGCG
62.680
66.667
0.00
0.00
45.52
5.03
66
67
4.681978
GTTGGTCAGCCCGAGCGT
62.682
66.667
0.00
0.00
45.52
5.07
67
68
3.936203
TTGGTCAGCCCGAGCGTT
61.936
61.111
0.00
0.00
45.52
4.84
68
69
3.469863
TTGGTCAGCCCGAGCGTTT
62.470
57.895
0.00
0.00
45.52
3.60
69
70
3.423154
GGTCAGCCCGAGCGTTTG
61.423
66.667
0.00
0.00
46.67
2.93
70
71
2.665185
GTCAGCCCGAGCGTTTGT
60.665
61.111
0.00
0.00
46.67
2.83
71
72
2.357034
TCAGCCCGAGCGTTTGTC
60.357
61.111
0.00
0.00
46.67
3.18
72
73
3.423154
CAGCCCGAGCGTTTGTCC
61.423
66.667
0.00
0.00
46.67
4.02
82
83
3.437845
CGTTTGTCCGCAGTTTGAG
57.562
52.632
0.00
0.00
0.00
3.02
83
84
0.934496
CGTTTGTCCGCAGTTTGAGA
59.066
50.000
0.00
0.00
0.00
3.27
84
85
1.070577
CGTTTGTCCGCAGTTTGAGAG
60.071
52.381
0.00
0.00
0.00
3.20
85
86
1.264288
GTTTGTCCGCAGTTTGAGAGG
59.736
52.381
0.00
0.00
0.00
3.69
86
87
0.468226
TTGTCCGCAGTTTGAGAGGT
59.532
50.000
0.00
0.00
0.00
3.85
87
88
0.033504
TGTCCGCAGTTTGAGAGGTC
59.966
55.000
0.00
0.00
0.00
3.85
88
89
0.318762
GTCCGCAGTTTGAGAGGTCT
59.681
55.000
0.00
0.00
0.00
3.85
89
90
1.544691
GTCCGCAGTTTGAGAGGTCTA
59.455
52.381
0.00
0.00
0.00
2.59
90
91
1.544691
TCCGCAGTTTGAGAGGTCTAC
59.455
52.381
0.00
0.00
0.00
2.59
91
92
1.546476
CCGCAGTTTGAGAGGTCTACT
59.454
52.381
0.00
0.00
0.00
2.57
92
93
2.028930
CCGCAGTTTGAGAGGTCTACTT
60.029
50.000
0.00
0.00
0.00
2.24
93
94
2.989840
CGCAGTTTGAGAGGTCTACTTG
59.010
50.000
0.00
0.00
0.00
3.16
94
95
3.330267
GCAGTTTGAGAGGTCTACTTGG
58.670
50.000
0.00
0.00
0.00
3.61
95
96
3.866449
GCAGTTTGAGAGGTCTACTTGGG
60.866
52.174
0.00
0.00
0.00
4.12
96
97
3.325135
CAGTTTGAGAGGTCTACTTGGGT
59.675
47.826
0.00
0.00
0.00
4.51
97
98
3.579151
AGTTTGAGAGGTCTACTTGGGTC
59.421
47.826
0.00
0.00
0.00
4.46
98
99
2.992847
TGAGAGGTCTACTTGGGTCA
57.007
50.000
0.00
0.00
0.00
4.02
99
100
3.254093
TGAGAGGTCTACTTGGGTCAA
57.746
47.619
0.00
0.00
0.00
3.18
100
101
3.791320
TGAGAGGTCTACTTGGGTCAAT
58.209
45.455
0.00
0.00
0.00
2.57
101
102
4.168101
TGAGAGGTCTACTTGGGTCAATT
58.832
43.478
0.00
0.00
0.00
2.32
102
103
4.597507
TGAGAGGTCTACTTGGGTCAATTT
59.402
41.667
0.00
0.00
0.00
1.82
103
104
5.073144
TGAGAGGTCTACTTGGGTCAATTTT
59.927
40.000
0.00
0.00
0.00
1.82
104
105
5.953571
AGAGGTCTACTTGGGTCAATTTTT
58.046
37.500
0.00
0.00
0.00
1.94
129
130
2.125106
GGTCACTGACCGGATGGC
60.125
66.667
9.46
1.62
43.14
4.40
130
131
2.125106
GTCACTGACCGGATGGCC
60.125
66.667
9.46
0.00
39.70
5.36
131
132
2.284625
TCACTGACCGGATGGCCT
60.285
61.111
9.46
0.00
39.70
5.19
132
133
2.124983
CACTGACCGGATGGCCTG
60.125
66.667
9.46
0.00
39.70
4.85
133
134
4.101448
ACTGACCGGATGGCCTGC
62.101
66.667
9.46
0.00
39.70
4.85
162
163
4.680702
GTTTGAGACGGGTATAAGAGACC
58.319
47.826
0.00
0.00
36.12
3.85
169
170
1.411041
GGTATAAGAGACCCGGCTGT
58.589
55.000
0.00
0.00
0.00
4.40
170
171
2.590821
GGTATAAGAGACCCGGCTGTA
58.409
52.381
0.00
0.00
0.00
2.74
171
172
2.557490
GGTATAAGAGACCCGGCTGTAG
59.443
54.545
0.00
0.00
0.00
2.74
172
173
2.750141
ATAAGAGACCCGGCTGTAGA
57.250
50.000
0.00
0.00
0.00
2.59
173
174
2.750141
TAAGAGACCCGGCTGTAGAT
57.250
50.000
0.00
0.00
0.00
1.98
174
175
1.115467
AAGAGACCCGGCTGTAGATG
58.885
55.000
0.00
0.00
0.00
2.90
175
176
0.757188
AGAGACCCGGCTGTAGATGG
60.757
60.000
0.00
0.00
0.00
3.51
176
177
1.001760
AGACCCGGCTGTAGATGGT
59.998
57.895
0.00
0.00
0.00
3.55
177
178
1.043673
AGACCCGGCTGTAGATGGTC
61.044
60.000
9.27
9.27
44.64
4.02
178
179
1.001760
ACCCGGCTGTAGATGGTCT
59.998
57.895
0.00
0.00
0.00
3.85
179
180
0.617820
ACCCGGCTGTAGATGGTCTT
60.618
55.000
0.00
0.00
0.00
3.01
180
181
1.342674
ACCCGGCTGTAGATGGTCTTA
60.343
52.381
0.00
0.00
0.00
2.10
181
182
1.971357
CCCGGCTGTAGATGGTCTTAT
59.029
52.381
0.00
0.00
0.00
1.73
182
183
2.289072
CCCGGCTGTAGATGGTCTTATG
60.289
54.545
0.00
0.00
0.00
1.90
183
184
2.365617
CCGGCTGTAGATGGTCTTATGT
59.634
50.000
0.00
0.00
0.00
2.29
184
185
3.553096
CCGGCTGTAGATGGTCTTATGTC
60.553
52.174
0.00
0.00
0.00
3.06
185
186
3.319405
CGGCTGTAGATGGTCTTATGTCT
59.681
47.826
0.00
0.00
0.00
3.41
186
187
4.519350
CGGCTGTAGATGGTCTTATGTCTA
59.481
45.833
0.00
0.00
0.00
2.59
187
188
5.184096
CGGCTGTAGATGGTCTTATGTCTAT
59.816
44.000
0.00
0.00
0.00
1.98
188
189
6.294787
CGGCTGTAGATGGTCTTATGTCTATT
60.295
42.308
0.00
0.00
0.00
1.73
189
190
7.093992
GGCTGTAGATGGTCTTATGTCTATTC
58.906
42.308
0.00
0.00
0.00
1.75
190
191
7.255977
GGCTGTAGATGGTCTTATGTCTATTCA
60.256
40.741
0.00
0.00
0.00
2.57
191
192
8.144478
GCTGTAGATGGTCTTATGTCTATTCAA
58.856
37.037
0.00
0.00
0.00
2.69
192
193
9.469807
CTGTAGATGGTCTTATGTCTATTCAAC
57.530
37.037
0.00
0.00
0.00
3.18
193
194
9.201989
TGTAGATGGTCTTATGTCTATTCAACT
57.798
33.333
0.00
0.00
0.00
3.16
197
198
9.988815
GATGGTCTTATGTCTATTCAACTATGT
57.011
33.333
0.00
0.00
0.00
2.29
206
207
9.712305
ATGTCTATTCAACTATGTAATGCTACC
57.288
33.333
0.00
0.00
0.00
3.18
207
208
8.700973
TGTCTATTCAACTATGTAATGCTACCA
58.299
33.333
0.00
0.00
0.00
3.25
208
209
9.712305
GTCTATTCAACTATGTAATGCTACCAT
57.288
33.333
0.00
0.00
0.00
3.55
213
214
9.461312
TTCAACTATGTAATGCTACCATTTTCT
57.539
29.630
0.00
0.00
41.68
2.52
271
272
1.066502
ACTGCCAACCCACAAAAACAC
60.067
47.619
0.00
0.00
0.00
3.32
274
275
1.202475
GCCAACCCACAAAAACACGAT
60.202
47.619
0.00
0.00
0.00
3.73
380
381
1.224069
AAATGAGCGATCCGATGGCG
61.224
55.000
9.43
0.00
39.14
5.69
385
386
2.662857
CGATCCGATGGCGCACAT
60.663
61.111
10.83
10.68
44.18
3.21
438
439
2.821366
CAGAGCATCACCCGCACC
60.821
66.667
0.00
0.00
37.82
5.01
442
443
2.821366
GCATCACCCGCACCTGAG
60.821
66.667
0.00
0.00
0.00
3.35
481
487
0.581053
GCAATTTTTGTGGCGTGGTG
59.419
50.000
0.00
0.00
0.00
4.17
508
514
0.952497
CCGCGTCGCCTACTAGGATA
60.952
60.000
12.44
0.00
37.67
2.59
687
709
2.997986
ACGACACGGCAAATACCTAAAG
59.002
45.455
0.00
0.00
0.00
1.85
912
1163
0.737715
CCAAGCTCTCCGTCCTTTCG
60.738
60.000
0.00
0.00
0.00
3.46
967
1229
1.066787
TCTTCGTCGAGCAGAGAGAGA
60.067
52.381
0.00
0.00
0.00
3.10
968
1230
1.327460
CTTCGTCGAGCAGAGAGAGAG
59.673
57.143
0.00
0.00
0.00
3.20
969
1231
0.533032
TCGTCGAGCAGAGAGAGAGA
59.467
55.000
0.00
0.00
0.00
3.10
979
1241
3.282021
CAGAGAGAGAGAGAAGGAGGTG
58.718
54.545
0.00
0.00
0.00
4.00
1270
1539
3.344215
GCTGCGCTCATCCGGATG
61.344
66.667
34.42
34.42
40.09
3.51
1275
1544
0.737715
GCGCTCATCCGGATGTATCC
60.738
60.000
36.95
23.58
43.65
2.59
1276
1545
0.108615
CGCTCATCCGGATGTATCCC
60.109
60.000
36.95
22.13
44.24
3.85
1352
1628
1.681538
TTCGAATCGAGGAGAGGGAG
58.318
55.000
5.24
0.00
37.14
4.30
1359
1635
3.320610
TCGAGGAGAGGGAGATGAAAT
57.679
47.619
0.00
0.00
0.00
2.17
1376
1652
7.809238
AGATGAAATATGGGAGAGAATGTTCA
58.191
34.615
0.00
0.00
0.00
3.18
1431
1707
6.577427
GCGAGTTAAATTCGTTTGATTTCTGT
59.423
34.615
11.02
0.00
40.08
3.41
1432
1708
7.201157
GCGAGTTAAATTCGTTTGATTTCTGTC
60.201
37.037
11.02
0.00
40.08
3.51
1467
1744
5.956068
TCCATTCATGTTGAAATCGTTGA
57.044
34.783
0.00
0.00
40.12
3.18
1468
1745
6.513806
TCCATTCATGTTGAAATCGTTGAT
57.486
33.333
0.00
0.00
40.12
2.57
1475
1752
7.028962
TCATGTTGAAATCGTTGATTGAATCC
58.971
34.615
2.26
0.00
32.14
3.01
1485
1762
4.089361
GTTGATTGAATCCCTTGTTCCCT
58.911
43.478
2.26
0.00
0.00
4.20
1487
1764
4.088634
TGATTGAATCCCTTGTTCCCTTG
58.911
43.478
2.26
0.00
0.00
3.61
1490
1767
2.171003
GAATCCCTTGTTCCCTTGTGG
58.829
52.381
0.00
0.00
0.00
4.17
1576
1874
2.161609
GGGCACTACCGATTTTCTGTTG
59.838
50.000
0.00
0.00
40.62
3.33
1577
1875
2.812011
GGCACTACCGATTTTCTGTTGT
59.188
45.455
0.00
0.00
0.00
3.32
1579
1877
4.453136
GGCACTACCGATTTTCTGTTGTTA
59.547
41.667
0.00
0.00
0.00
2.41
1581
1879
6.349033
GGCACTACCGATTTTCTGTTGTTATT
60.349
38.462
0.00
0.00
0.00
1.40
1582
1880
7.081976
GCACTACCGATTTTCTGTTGTTATTT
58.918
34.615
0.00
0.00
0.00
1.40
1583
1881
7.060633
GCACTACCGATTTTCTGTTGTTATTTG
59.939
37.037
0.00
0.00
0.00
2.32
1624
1932
3.736100
CACAAGCGGCGCAATGGA
61.736
61.111
35.02
0.00
0.00
3.41
1665
1973
6.461509
CCCATTTTGTTAAGATAGATGGGTGC
60.462
42.308
15.06
0.00
44.54
5.01
1677
1985
2.359850
GGGTGCAGCATCGTGGAA
60.360
61.111
19.06
0.00
0.00
3.53
1678
1986
2.690778
GGGTGCAGCATCGTGGAAC
61.691
63.158
19.06
0.00
0.00
3.62
1679
1987
1.965930
GGTGCAGCATCGTGGAACA
60.966
57.895
11.86
0.00
35.74
3.18
1681
1989
0.110056
GTGCAGCATCGTGGAACAAG
60.110
55.000
0.00
0.00
44.16
3.16
1689
1997
2.074547
TCGTGGAACAAGATCGAACC
57.925
50.000
0.00
0.00
42.83
3.62
1692
2000
1.060729
TGGAACAAGATCGAACCCCA
58.939
50.000
0.00
0.00
31.92
4.96
1693
2001
1.271163
TGGAACAAGATCGAACCCCAC
60.271
52.381
0.00
0.00
31.92
4.61
1694
2002
1.271163
GGAACAAGATCGAACCCCACA
60.271
52.381
0.00
0.00
0.00
4.17
1695
2003
2.618045
GGAACAAGATCGAACCCCACAT
60.618
50.000
0.00
0.00
0.00
3.21
1696
2004
2.879103
ACAAGATCGAACCCCACATT
57.121
45.000
0.00
0.00
0.00
2.71
1697
2005
2.711542
ACAAGATCGAACCCCACATTC
58.288
47.619
0.00
0.00
0.00
2.67
1698
2006
2.017049
CAAGATCGAACCCCACATTCC
58.983
52.381
0.00
0.00
0.00
3.01
1699
2007
1.285280
AGATCGAACCCCACATTCCA
58.715
50.000
0.00
0.00
0.00
3.53
1701
2009
2.158755
AGATCGAACCCCACATTCCATC
60.159
50.000
0.00
0.00
0.00
3.51
1702
2010
0.107897
TCGAACCCCACATTCCATCG
60.108
55.000
0.00
0.00
0.00
3.84
1703
2011
0.392461
CGAACCCCACATTCCATCGT
60.392
55.000
0.00
0.00
0.00
3.73
1704
2012
1.379527
GAACCCCACATTCCATCGTC
58.620
55.000
0.00
0.00
0.00
4.20
1705
2013
0.034477
AACCCCACATTCCATCGTCC
60.034
55.000
0.00
0.00
0.00
4.79
1706
2014
0.914417
ACCCCACATTCCATCGTCCT
60.914
55.000
0.00
0.00
0.00
3.85
1707
2015
0.255890
CCCCACATTCCATCGTCCTT
59.744
55.000
0.00
0.00
0.00
3.36
1708
2016
1.382522
CCCACATTCCATCGTCCTTG
58.617
55.000
0.00
0.00
0.00
3.61
1709
2017
1.065491
CCCACATTCCATCGTCCTTGA
60.065
52.381
0.00
0.00
0.00
3.02
1710
2018
2.421952
CCCACATTCCATCGTCCTTGAT
60.422
50.000
0.00
0.00
0.00
2.57
1711
2019
2.615447
CCACATTCCATCGTCCTTGATG
59.385
50.000
0.00
0.00
44.29
3.07
1719
2027
3.499737
GTCCTTGATGGGCGCGTG
61.500
66.667
8.43
0.00
36.20
5.34
1720
2028
4.776322
TCCTTGATGGGCGCGTGG
62.776
66.667
8.43
0.00
36.20
4.94
1721
2029
4.776322
CCTTGATGGGCGCGTGGA
62.776
66.667
8.43
0.00
0.00
4.02
1723
2031
3.958147
CTTGATGGGCGCGTGGAGT
62.958
63.158
8.43
0.00
0.00
3.85
1724
2032
2.572095
CTTGATGGGCGCGTGGAGTA
62.572
60.000
8.43
0.00
0.00
2.59
1725
2033
2.585247
GATGGGCGCGTGGAGTAC
60.585
66.667
8.43
0.00
0.00
2.73
1729
2037
1.324740
TGGGCGCGTGGAGTACTATT
61.325
55.000
8.43
0.00
0.00
1.73
1730
2038
0.874607
GGGCGCGTGGAGTACTATTG
60.875
60.000
8.43
0.00
0.00
1.90
1871
2265
6.206498
ACGTTGGCAGTAAAGATTTTCTTTC
58.794
36.000
5.81
0.14
42.60
2.62
2037
2886
3.272847
ACCCATGACCCAACCCCC
61.273
66.667
0.00
0.00
0.00
5.40
2038
2887
3.272042
CCCATGACCCAACCCCCA
61.272
66.667
0.00
0.00
0.00
4.96
2039
2888
2.037208
CCATGACCCAACCCCCAC
59.963
66.667
0.00
0.00
0.00
4.61
2040
2889
2.547595
CCATGACCCAACCCCCACT
61.548
63.158
0.00
0.00
0.00
4.00
2041
2890
1.000896
CATGACCCAACCCCCACTC
60.001
63.158
0.00
0.00
0.00
3.51
2042
2891
2.238701
ATGACCCAACCCCCACTCC
61.239
63.158
0.00
0.00
0.00
3.85
2043
2892
2.856988
GACCCAACCCCCACTCCA
60.857
66.667
0.00
0.00
0.00
3.86
2044
2893
2.121042
ACCCAACCCCCACTCCAT
60.121
61.111
0.00
0.00
0.00
3.41
2045
2894
2.211468
GACCCAACCCCCACTCCATC
62.211
65.000
0.00
0.00
0.00
3.51
2090
2944
1.323412
AAGTCACGTCTGCTCTCTGT
58.677
50.000
0.00
0.00
0.00
3.41
2198
3059
0.958822
GACGGTGGCCAATTTCAACT
59.041
50.000
7.24
0.00
0.00
3.16
2201
3062
0.681175
GGTGGCCAATTTCAACTGCT
59.319
50.000
7.24
0.00
0.00
4.24
2218
3079
4.312443
ACTGCTTTGATGCTTTCCAAATG
58.688
39.130
0.00
0.00
32.60
2.32
2219
3080
4.039488
ACTGCTTTGATGCTTTCCAAATGA
59.961
37.500
0.00
0.00
32.60
2.57
2220
3081
4.562082
TGCTTTGATGCTTTCCAAATGAG
58.438
39.130
0.00
0.00
32.60
2.90
2221
3082
4.281435
TGCTTTGATGCTTTCCAAATGAGA
59.719
37.500
0.00
0.00
32.60
3.27
2222
3083
5.221481
TGCTTTGATGCTTTCCAAATGAGAA
60.221
36.000
0.00
0.00
32.60
2.87
2223
3084
5.697633
GCTTTGATGCTTTCCAAATGAGAAA
59.302
36.000
0.00
0.00
32.60
2.52
2224
3085
6.203338
GCTTTGATGCTTTCCAAATGAGAAAA
59.797
34.615
0.00
0.00
33.06
2.29
2225
3086
7.254863
GCTTTGATGCTTTCCAAATGAGAAAAA
60.255
33.333
0.00
0.00
33.06
1.94
2226
3087
8.680039
TTTGATGCTTTCCAAATGAGAAAAAT
57.320
26.923
0.00
0.00
33.06
1.82
2227
3088
8.680039
TTGATGCTTTCCAAATGAGAAAAATT
57.320
26.923
0.00
0.00
33.06
1.82
2228
3089
9.775854
TTGATGCTTTCCAAATGAGAAAAATTA
57.224
25.926
0.00
0.00
33.06
1.40
2229
3090
9.775854
TGATGCTTTCCAAATGAGAAAAATTAA
57.224
25.926
0.00
0.00
33.06
1.40
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
8
9
1.046472
TATAGGGCGGATATGGGGCG
61.046
60.000
0.00
0.00
0.00
6.13
9
10
1.435256
ATATAGGGCGGATATGGGGC
58.565
55.000
0.00
0.00
0.00
5.80
10
11
3.435026
CCAAATATAGGGCGGATATGGGG
60.435
52.174
0.00
0.00
0.00
4.96
11
12
3.202151
ACCAAATATAGGGCGGATATGGG
59.798
47.826
0.00
6.65
0.00
4.00
12
13
4.503714
ACCAAATATAGGGCGGATATGG
57.496
45.455
0.00
0.00
0.00
2.74
13
14
5.125417
CCAAACCAAATATAGGGCGGATATG
59.875
44.000
0.00
0.00
0.00
1.78
14
15
5.014755
TCCAAACCAAATATAGGGCGGATAT
59.985
40.000
0.00
0.00
0.00
1.63
15
16
4.351407
TCCAAACCAAATATAGGGCGGATA
59.649
41.667
0.00
0.00
0.00
2.59
16
17
3.139397
TCCAAACCAAATATAGGGCGGAT
59.861
43.478
0.00
0.00
0.00
4.18
17
18
2.510382
TCCAAACCAAATATAGGGCGGA
59.490
45.455
0.00
0.00
0.00
5.54
18
19
2.938838
TCCAAACCAAATATAGGGCGG
58.061
47.619
0.00
0.00
0.00
6.13
19
20
4.153475
CGTATCCAAACCAAATATAGGGCG
59.847
45.833
0.00
0.00
0.00
6.13
20
21
5.310451
TCGTATCCAAACCAAATATAGGGC
58.690
41.667
0.00
0.00
0.00
5.19
21
22
5.938125
CCTCGTATCCAAACCAAATATAGGG
59.062
44.000
0.00
0.00
0.00
3.53
22
23
6.765403
TCCTCGTATCCAAACCAAATATAGG
58.235
40.000
0.00
0.00
0.00
2.57
23
24
7.385205
CACTCCTCGTATCCAAACCAAATATAG
59.615
40.741
0.00
0.00
0.00
1.31
24
25
7.147620
ACACTCCTCGTATCCAAACCAAATATA
60.148
37.037
0.00
0.00
0.00
0.86
25
26
6.055588
CACTCCTCGTATCCAAACCAAATAT
58.944
40.000
0.00
0.00
0.00
1.28
26
27
5.046159
ACACTCCTCGTATCCAAACCAAATA
60.046
40.000
0.00
0.00
0.00
1.40
27
28
4.261801
CACTCCTCGTATCCAAACCAAAT
58.738
43.478
0.00
0.00
0.00
2.32
28
29
3.071892
ACACTCCTCGTATCCAAACCAAA
59.928
43.478
0.00
0.00
0.00
3.28
29
30
2.635915
ACACTCCTCGTATCCAAACCAA
59.364
45.455
0.00
0.00
0.00
3.67
30
31
2.253610
ACACTCCTCGTATCCAAACCA
58.746
47.619
0.00
0.00
0.00
3.67
31
32
3.000727
CAACACTCCTCGTATCCAAACC
58.999
50.000
0.00
0.00
0.00
3.27
32
33
3.000727
CCAACACTCCTCGTATCCAAAC
58.999
50.000
0.00
0.00
0.00
2.93
33
34
2.635915
ACCAACACTCCTCGTATCCAAA
59.364
45.455
0.00
0.00
0.00
3.28
34
35
2.232941
GACCAACACTCCTCGTATCCAA
59.767
50.000
0.00
0.00
0.00
3.53
35
36
1.822990
GACCAACACTCCTCGTATCCA
59.177
52.381
0.00
0.00
0.00
3.41
36
37
1.822990
TGACCAACACTCCTCGTATCC
59.177
52.381
0.00
0.00
0.00
2.59
37
38
2.735762
GCTGACCAACACTCCTCGTATC
60.736
54.545
0.00
0.00
0.00
2.24
38
39
1.204941
GCTGACCAACACTCCTCGTAT
59.795
52.381
0.00
0.00
0.00
3.06
39
40
0.601558
GCTGACCAACACTCCTCGTA
59.398
55.000
0.00
0.00
0.00
3.43
40
41
1.367840
GCTGACCAACACTCCTCGT
59.632
57.895
0.00
0.00
0.00
4.18
41
42
1.374758
GGCTGACCAACACTCCTCG
60.375
63.158
0.00
0.00
35.26
4.63
42
43
1.003233
GGGCTGACCAACACTCCTC
60.003
63.158
0.00
0.00
39.85
3.71
43
44
2.883828
CGGGCTGACCAACACTCCT
61.884
63.158
0.00
0.00
40.22
3.69
44
45
2.358737
CGGGCTGACCAACACTCC
60.359
66.667
0.00
0.00
40.22
3.85
45
46
1.374758
CTCGGGCTGACCAACACTC
60.375
63.158
0.00
0.00
40.22
3.51
46
47
2.743718
CTCGGGCTGACCAACACT
59.256
61.111
0.00
0.00
40.22
3.55
47
48
3.050275
GCTCGGGCTGACCAACAC
61.050
66.667
0.00
0.00
40.22
3.32
48
49
4.680237
CGCTCGGGCTGACCAACA
62.680
66.667
5.36
0.00
40.22
3.33
49
50
4.681978
ACGCTCGGGCTGACCAAC
62.682
66.667
5.36
0.00
40.22
3.77
50
51
3.469863
AAACGCTCGGGCTGACCAA
62.470
57.895
5.36
0.00
40.22
3.67
51
52
3.936203
AAACGCTCGGGCTGACCA
61.936
61.111
5.36
0.00
40.22
4.02
52
53
3.423154
CAAACGCTCGGGCTGACC
61.423
66.667
5.36
0.00
36.09
4.02
53
54
2.665185
ACAAACGCTCGGGCTGAC
60.665
61.111
5.36
0.00
36.09
3.51
54
55
2.357034
GACAAACGCTCGGGCTGA
60.357
61.111
5.36
0.00
36.09
4.26
55
56
3.423154
GGACAAACGCTCGGGCTG
61.423
66.667
5.36
0.00
36.09
4.85
64
65
0.934496
TCTCAAACTGCGGACAAACG
59.066
50.000
0.00
0.00
0.00
3.60
65
66
1.264288
CCTCTCAAACTGCGGACAAAC
59.736
52.381
0.00
0.00
0.00
2.93
66
67
1.134220
ACCTCTCAAACTGCGGACAAA
60.134
47.619
0.00
0.00
0.00
2.83
67
68
0.468226
ACCTCTCAAACTGCGGACAA
59.532
50.000
0.00
0.00
0.00
3.18
68
69
0.033504
GACCTCTCAAACTGCGGACA
59.966
55.000
0.00
0.00
0.00
4.02
69
70
0.318762
AGACCTCTCAAACTGCGGAC
59.681
55.000
0.00
0.00
0.00
4.79
70
71
1.544691
GTAGACCTCTCAAACTGCGGA
59.455
52.381
0.00
0.00
0.00
5.54
71
72
1.546476
AGTAGACCTCTCAAACTGCGG
59.454
52.381
0.00
0.00
0.00
5.69
72
73
2.989840
CAAGTAGACCTCTCAAACTGCG
59.010
50.000
0.00
0.00
0.00
5.18
73
74
3.330267
CCAAGTAGACCTCTCAAACTGC
58.670
50.000
0.00
0.00
0.00
4.40
74
75
3.325135
ACCCAAGTAGACCTCTCAAACTG
59.675
47.826
0.00
0.00
0.00
3.16
75
76
3.579151
GACCCAAGTAGACCTCTCAAACT
59.421
47.826
0.00
0.00
0.00
2.66
76
77
3.323979
TGACCCAAGTAGACCTCTCAAAC
59.676
47.826
0.00
0.00
0.00
2.93
77
78
3.583228
TGACCCAAGTAGACCTCTCAAA
58.417
45.455
0.00
0.00
0.00
2.69
78
79
3.254093
TGACCCAAGTAGACCTCTCAA
57.746
47.619
0.00
0.00
0.00
3.02
79
80
2.992847
TGACCCAAGTAGACCTCTCA
57.007
50.000
0.00
0.00
0.00
3.27
80
81
4.828072
AATTGACCCAAGTAGACCTCTC
57.172
45.455
0.00
0.00
0.00
3.20
81
82
5.584551
AAAATTGACCCAAGTAGACCTCT
57.415
39.130
0.00
0.00
0.00
3.69
113
114
2.125106
GGCCATCCGGTCAGTGAC
60.125
66.667
15.24
15.24
36.65
3.67
114
115
2.284625
AGGCCATCCGGTCAGTGA
60.285
61.111
5.01
0.00
40.51
3.41
115
116
2.124983
CAGGCCATCCGGTCAGTG
60.125
66.667
5.01
0.00
40.51
3.66
116
117
4.101448
GCAGGCCATCCGGTCAGT
62.101
66.667
5.01
0.00
40.51
3.41
129
130
4.139420
CTCAAACGCTCGCGCAGG
62.139
66.667
8.75
0.00
44.19
4.85
130
131
3.105782
TCTCAAACGCTCGCGCAG
61.106
61.111
8.75
5.26
44.19
5.18
131
132
3.403057
GTCTCAAACGCTCGCGCA
61.403
61.111
8.75
0.00
44.19
6.09
132
133
4.470050
CGTCTCAAACGCTCGCGC
62.470
66.667
11.65
0.00
45.76
6.86
139
140
7.669070
GGGTCTCTTATACCCGTCTCAAACG
62.669
52.000
0.00
0.00
46.95
3.60
140
141
4.441217
GGGTCTCTTATACCCGTCTCAAAC
60.441
50.000
0.00
0.00
46.95
2.93
141
142
3.703052
GGGTCTCTTATACCCGTCTCAAA
59.297
47.826
0.00
0.00
46.95
2.69
142
143
3.294214
GGGTCTCTTATACCCGTCTCAA
58.706
50.000
0.00
0.00
46.95
3.02
143
144
2.941480
GGGTCTCTTATACCCGTCTCA
58.059
52.381
0.00
0.00
46.95
3.27
150
151
1.411041
ACAGCCGGGTCTCTTATACC
58.589
55.000
1.27
0.00
36.19
2.73
151
152
3.484407
TCTACAGCCGGGTCTCTTATAC
58.516
50.000
1.27
0.00
0.00
1.47
152
153
3.870538
TCTACAGCCGGGTCTCTTATA
57.129
47.619
1.27
0.00
0.00
0.98
153
154
2.750141
TCTACAGCCGGGTCTCTTAT
57.250
50.000
1.27
0.00
0.00
1.73
154
155
2.307768
CATCTACAGCCGGGTCTCTTA
58.692
52.381
1.27
0.00
0.00
2.10
155
156
1.115467
CATCTACAGCCGGGTCTCTT
58.885
55.000
1.27
0.00
0.00
2.85
156
157
0.757188
CCATCTACAGCCGGGTCTCT
60.757
60.000
1.27
0.00
0.00
3.10
157
158
1.043673
ACCATCTACAGCCGGGTCTC
61.044
60.000
1.27
0.00
0.00
3.36
158
159
1.001760
ACCATCTACAGCCGGGTCT
59.998
57.895
1.27
0.00
0.00
3.85
159
160
1.043673
AGACCATCTACAGCCGGGTC
61.044
60.000
1.27
0.00
46.54
4.46
160
161
0.617820
AAGACCATCTACAGCCGGGT
60.618
55.000
0.00
0.00
33.78
5.28
161
162
1.410004
TAAGACCATCTACAGCCGGG
58.590
55.000
2.18
0.00
0.00
5.73
162
163
2.365617
ACATAAGACCATCTACAGCCGG
59.634
50.000
0.00
0.00
0.00
6.13
163
164
3.319405
AGACATAAGACCATCTACAGCCG
59.681
47.826
0.00
0.00
0.00
5.52
164
165
4.946478
AGACATAAGACCATCTACAGCC
57.054
45.455
0.00
0.00
0.00
4.85
165
166
7.661968
TGAATAGACATAAGACCATCTACAGC
58.338
38.462
0.00
0.00
0.00
4.40
166
167
9.469807
GTTGAATAGACATAAGACCATCTACAG
57.530
37.037
0.00
0.00
0.00
2.74
167
168
9.201989
AGTTGAATAGACATAAGACCATCTACA
57.798
33.333
0.00
0.00
0.00
2.74
171
172
9.988815
ACATAGTTGAATAGACATAAGACCATC
57.011
33.333
0.00
0.00
0.00
3.51
180
181
9.712305
GGTAGCATTACATAGTTGAATAGACAT
57.288
33.333
0.00
0.00
0.00
3.06
181
182
8.700973
TGGTAGCATTACATAGTTGAATAGACA
58.299
33.333
0.00
0.00
0.00
3.41
182
183
9.712305
ATGGTAGCATTACATAGTTGAATAGAC
57.288
33.333
0.40
0.00
0.00
2.59
187
188
9.461312
AGAAAATGGTAGCATTACATAGTTGAA
57.539
29.630
19.84
0.00
0.00
2.69
250
251
1.066573
TGTTTTTGTGGGTTGGCAGTG
60.067
47.619
0.00
0.00
0.00
3.66
294
295
4.408921
TGGCTGGCTGTATTAACTGACTAT
59.591
41.667
2.00
0.00
33.84
2.12
364
365
4.950062
GCGCCATCGGATCGCTCA
62.950
66.667
14.56
0.00
44.79
4.26
380
381
1.709147
GCAGATCGGTCACCATGTGC
61.709
60.000
11.03
11.03
32.73
4.57
385
386
2.230994
GAGCTGCAGATCGGTCACCA
62.231
60.000
20.43
0.00
0.00
4.17
438
439
1.122019
CCCCTACCCCCGATTCTCAG
61.122
65.000
0.00
0.00
0.00
3.35
442
443
3.567209
GCCCCCTACCCCCGATTC
61.567
72.222
0.00
0.00
0.00
2.52
744
994
7.730994
TTTTATAGGAGGAAATAATGGGGGA
57.269
36.000
0.00
0.00
0.00
4.81
899
1150
1.811359
GAGAACTCGAAAGGACGGAGA
59.189
52.381
0.00
0.00
0.00
3.71
912
1163
1.355005
GAGAAAGCAGCCGAGAACTC
58.645
55.000
0.00
0.00
0.00
3.01
967
1229
2.938428
ATCTGACCACCTCCTTCTCT
57.062
50.000
0.00
0.00
0.00
3.10
968
1230
3.604582
CAAATCTGACCACCTCCTTCTC
58.395
50.000
0.00
0.00
0.00
2.87
969
1231
2.290577
GCAAATCTGACCACCTCCTTCT
60.291
50.000
0.00
0.00
0.00
2.85
979
1241
0.579156
GATCTCGCGCAAATCTGACC
59.421
55.000
8.75
0.00
0.00
4.02
1270
1539
2.365617
TCTCTCTTCAATGGCGGGATAC
59.634
50.000
0.00
0.00
0.00
2.24
1275
1544
1.753649
TCTCTCTCTCTTCAATGGCGG
59.246
52.381
0.00
0.00
0.00
6.13
1276
1545
2.687425
TCTCTCTCTCTCTTCAATGGCG
59.313
50.000
0.00
0.00
0.00
5.69
1352
1628
8.455903
TTGAACATTCTCTCCCATATTTCATC
57.544
34.615
0.00
0.00
0.00
2.92
1359
1635
8.054572
TCAATCAATTGAACATTCTCTCCCATA
58.945
33.333
13.09
0.00
43.26
2.74
1431
1707
3.095332
TGAATGGAATGGCAAAATCGGA
58.905
40.909
0.00
0.00
0.00
4.55
1432
1708
3.523606
TGAATGGAATGGCAAAATCGG
57.476
42.857
0.00
0.00
0.00
4.18
1467
1744
3.834231
CACAAGGGAACAAGGGATTCAAT
59.166
43.478
0.00
0.00
0.00
2.57
1468
1745
3.230134
CACAAGGGAACAAGGGATTCAA
58.770
45.455
0.00
0.00
0.00
2.69
1485
1762
2.026262
GCCTCTCCCAATTACTCCACAA
60.026
50.000
0.00
0.00
0.00
3.33
1487
1764
1.840635
AGCCTCTCCCAATTACTCCAC
59.159
52.381
0.00
0.00
0.00
4.02
1490
1767
1.488393
AGCAGCCTCTCCCAATTACTC
59.512
52.381
0.00
0.00
0.00
2.59
1624
1932
1.072266
TGGGATAGGGTTTGCTGTGT
58.928
50.000
0.00
0.00
0.00
3.72
1665
1973
1.325640
CGATCTTGTTCCACGATGCTG
59.674
52.381
0.00
0.00
0.00
4.41
1677
1985
2.618045
GGAATGTGGGGTTCGATCTTGT
60.618
50.000
0.00
0.00
0.00
3.16
1678
1986
2.017049
GGAATGTGGGGTTCGATCTTG
58.983
52.381
0.00
0.00
0.00
3.02
1679
1987
1.633432
TGGAATGTGGGGTTCGATCTT
59.367
47.619
0.00
0.00
0.00
2.40
1681
1989
2.222027
GATGGAATGTGGGGTTCGATC
58.778
52.381
0.00
0.00
34.97
3.69
1682
1990
1.475034
CGATGGAATGTGGGGTTCGAT
60.475
52.381
0.00
0.00
0.00
3.59
1683
1991
0.107897
CGATGGAATGTGGGGTTCGA
60.108
55.000
0.00
0.00
0.00
3.71
1684
1992
0.392461
ACGATGGAATGTGGGGTTCG
60.392
55.000
0.00
0.00
0.00
3.95
1685
1993
1.379527
GACGATGGAATGTGGGGTTC
58.620
55.000
0.00
0.00
0.00
3.62
1686
1994
0.034477
GGACGATGGAATGTGGGGTT
60.034
55.000
0.00
0.00
0.00
4.11
1689
1997
1.065491
TCAAGGACGATGGAATGTGGG
60.065
52.381
0.00
0.00
0.00
4.61
1698
2006
2.537560
GCGCCCATCAAGGACGATG
61.538
63.158
0.00
0.00
42.09
3.84
1699
2007
2.203070
GCGCCCATCAAGGACGAT
60.203
61.111
0.00
0.00
41.22
3.73
1702
2010
3.499737
CACGCGCCCATCAAGGAC
61.500
66.667
5.73
0.00
41.22
3.85
1703
2011
4.776322
CCACGCGCCCATCAAGGA
62.776
66.667
5.73
0.00
41.22
3.36
1704
2012
4.776322
TCCACGCGCCCATCAAGG
62.776
66.667
5.73
0.00
37.03
3.61
1705
2013
2.572095
TACTCCACGCGCCCATCAAG
62.572
60.000
5.73
0.00
0.00
3.02
1706
2014
2.651105
TACTCCACGCGCCCATCAA
61.651
57.895
5.73
0.00
0.00
2.57
1707
2015
3.071837
TACTCCACGCGCCCATCA
61.072
61.111
5.73
0.00
0.00
3.07
1708
2016
1.731433
TAGTACTCCACGCGCCCATC
61.731
60.000
5.73
0.00
0.00
3.51
1709
2017
1.113517
ATAGTACTCCACGCGCCCAT
61.114
55.000
5.73
0.00
0.00
4.00
1710
2018
1.324740
AATAGTACTCCACGCGCCCA
61.325
55.000
5.73
0.00
0.00
5.36
1711
2019
0.874607
CAATAGTACTCCACGCGCCC
60.875
60.000
5.73
0.00
0.00
6.13
1712
2020
0.101759
TCAATAGTACTCCACGCGCC
59.898
55.000
5.73
0.00
0.00
6.53
1715
2023
5.753438
TCATTCAATCAATAGTACTCCACGC
59.247
40.000
0.00
0.00
0.00
5.34
1716
2024
7.770801
TTCATTCAATCAATAGTACTCCACG
57.229
36.000
0.00
0.00
0.00
4.94
1717
2025
8.562892
CCATTCATTCAATCAATAGTACTCCAC
58.437
37.037
0.00
0.00
0.00
4.02
1718
2026
8.493607
TCCATTCATTCAATCAATAGTACTCCA
58.506
33.333
0.00
0.00
0.00
3.86
1719
2027
8.908786
TCCATTCATTCAATCAATAGTACTCC
57.091
34.615
0.00
0.00
0.00
3.85
1840
2234
6.673154
ATCTTTACTGCCAACGTAATTACC
57.327
37.500
10.01
0.00
0.00
2.85
1871
2265
0.385974
CCGCTTGTGCCTCTTTTTCG
60.386
55.000
0.00
0.00
35.36
3.46
2027
2432
2.121042
ATGGAGTGGGGGTTGGGT
60.121
61.111
0.00
0.00
0.00
4.51
2198
3059
4.281435
TCTCATTTGGAAAGCATCAAAGCA
59.719
37.500
0.00
0.00
36.49
3.91
2201
3062
8.680039
ATTTTTCTCATTTGGAAAGCATCAAA
57.320
26.923
0.00
0.00
37.29
2.69
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.