Multiple sequence alignment - TraesCS4D01G249000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G249000 chr4D 100.000 2243 0 0 1 2243 418359174 418356932 0.000000e+00 4143.0
1 TraesCS4D01G249000 chr4D 91.111 90 8 0 1001 1090 39353766 39353855 3.030000e-24 122.0
2 TraesCS4D01G249000 chr4D 91.765 85 7 0 1006 1090 39394531 39394447 3.910000e-23 119.0
3 TraesCS4D01G249000 chr4D 87.755 98 7 4 1378 1474 418357447 418357354 2.360000e-20 110.0
4 TraesCS4D01G249000 chr4D 87.755 98 7 4 1728 1821 418357797 418357701 2.360000e-20 110.0
5 TraesCS4D01G249000 chr4B 90.200 1500 84 34 225 1677 514586230 514584747 0.000000e+00 1897.0
6 TraesCS4D01G249000 chr4B 79.878 492 23 29 1758 2218 514584601 514584155 7.840000e-75 291.0
7 TraesCS4D01G249000 chr4B 92.941 85 6 0 1006 1090 57806349 57806265 8.410000e-25 124.0
8 TraesCS4D01G249000 chr4A 88.849 1103 79 17 493 1571 46560536 46561618 0.000000e+00 1315.0
9 TraesCS4D01G249000 chr4A 83.085 201 18 9 2018 2215 46562356 46562543 3.830000e-38 169.0
10 TraesCS4D01G249000 chr4A 84.962 133 17 3 1007 1136 560964962 560965094 5.030000e-27 132.0
11 TraesCS4D01G249000 chr4A 94.118 85 5 0 1006 1090 560951674 560951758 1.810000e-26 130.0
12 TraesCS4D01G249000 chr4A 90.789 76 7 0 1728 1803 46561436 46561511 3.940000e-18 102.0
13 TraesCS4D01G249000 chr7B 88.340 952 56 27 706 1624 469741916 469742845 0.000000e+00 1092.0
14 TraesCS4D01G249000 chr7B 87.106 349 23 4 327 670 469741314 469741645 2.100000e-100 375.0
15 TraesCS4D01G249000 chr7B 94.595 111 6 0 1823 1933 469742935 469743045 2.960000e-39 172.0
16 TraesCS4D01G249000 chr7B 84.343 198 6 11 2050 2243 469795773 469795949 1.070000e-38 171.0
17 TraesCS4D01G249000 chr7B 88.776 98 7 3 1728 1821 469742586 469742683 1.410000e-22 117.0
18 TraesCS4D01G249000 chr7B 100.000 35 0 0 1758 1792 469742849 469742883 5.170000e-07 65.8
19 TraesCS4D01G249000 chr1D 86.813 182 23 1 1 181 366007862 366008043 3.780000e-48 202.0
20 TraesCS4D01G249000 chr3D 85.870 184 26 0 1 184 154599068 154598885 1.760000e-46 196.0
21 TraesCS4D01G249000 chr3D 83.069 189 29 3 1 187 384560551 384560738 3.830000e-38 169.0
22 TraesCS4D01G249000 chr3B 85.475 179 26 0 1 179 427592853 427592675 1.060000e-43 187.0
23 TraesCS4D01G249000 chr1B 84.699 183 26 2 1 183 501358285 501358105 4.920000e-42 182.0
24 TraesCS4D01G249000 chr7D 82.967 182 31 0 1 182 41991226 41991045 4.960000e-37 165.0
25 TraesCS4D01G249000 chr7D 83.041 171 27 2 4 173 583052893 583053062 1.070000e-33 154.0
26 TraesCS4D01G249000 chr7A 82.888 187 28 4 1 186 35421464 35421281 4.960000e-37 165.0
27 TraesCS4D01G249000 chr5B 83.616 177 26 2 1 175 91898922 91899097 1.780000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G249000 chr4D 418356932 418359174 2242 True 1454.333333 4143 91.836667 1 2243 3 chr4D.!!$R2 2242
1 TraesCS4D01G249000 chr4B 514584155 514586230 2075 True 1094.000000 1897 85.039000 225 2218 2 chr4B.!!$R2 1993
2 TraesCS4D01G249000 chr4A 46560536 46562543 2007 False 528.666667 1315 87.574333 493 2215 3 chr4A.!!$F3 1722
3 TraesCS4D01G249000 chr7B 469741314 469743045 1731 False 364.360000 1092 91.763400 327 1933 5 chr7B.!!$F2 1606


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.033504 TGTCCGCAGTTTGAGAGGTC 59.966 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 1994 0.034477 GGACGATGGAATGTGGGGTT 60.034 55.0 0.0 0.0 0.0 4.11 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.000819 CGCCCCATATCCGCCCTA 61.001 66.667 0.00 0.00 0.00 3.53
26 27 2.367202 CGCCCCATATCCGCCCTAT 61.367 63.158 0.00 0.00 0.00 2.57
27 28 1.046472 CGCCCCATATCCGCCCTATA 61.046 60.000 0.00 0.00 0.00 1.31
28 29 1.435256 GCCCCATATCCGCCCTATAT 58.565 55.000 0.00 0.00 0.00 0.86
29 30 1.774856 GCCCCATATCCGCCCTATATT 59.225 52.381 0.00 0.00 0.00 1.28
30 31 2.174854 GCCCCATATCCGCCCTATATTT 59.825 50.000 0.00 0.00 0.00 1.40
31 32 3.820557 CCCCATATCCGCCCTATATTTG 58.179 50.000 0.00 0.00 0.00 2.32
32 33 3.435026 CCCCATATCCGCCCTATATTTGG 60.435 52.174 0.00 0.00 0.00 3.28
33 34 3.202151 CCCATATCCGCCCTATATTTGGT 59.798 47.826 0.00 0.00 0.00 3.67
34 35 4.325030 CCCATATCCGCCCTATATTTGGTT 60.325 45.833 0.00 0.00 0.00 3.67
35 36 5.261216 CCATATCCGCCCTATATTTGGTTT 58.739 41.667 0.00 0.00 0.00 3.27
36 37 5.125417 CCATATCCGCCCTATATTTGGTTTG 59.875 44.000 0.00 0.00 0.00 2.93
37 38 2.938838 TCCGCCCTATATTTGGTTTGG 58.061 47.619 0.00 0.00 0.00 3.28
38 39 2.510382 TCCGCCCTATATTTGGTTTGGA 59.490 45.455 0.00 0.00 0.00 3.53
39 40 3.139397 TCCGCCCTATATTTGGTTTGGAT 59.861 43.478 0.00 0.00 0.00 3.41
40 41 4.351407 TCCGCCCTATATTTGGTTTGGATA 59.649 41.667 0.00 0.00 0.00 2.59
41 42 4.457949 CCGCCCTATATTTGGTTTGGATAC 59.542 45.833 0.00 0.00 0.00 2.24
42 43 4.153475 CGCCCTATATTTGGTTTGGATACG 59.847 45.833 0.00 0.00 42.51 3.06
43 44 5.310451 GCCCTATATTTGGTTTGGATACGA 58.690 41.667 0.00 0.00 42.51 3.43
44 45 5.411669 GCCCTATATTTGGTTTGGATACGAG 59.588 44.000 0.00 0.00 42.51 4.18
45 46 5.938125 CCCTATATTTGGTTTGGATACGAGG 59.062 44.000 0.00 0.00 42.51 4.63
46 47 6.239772 CCCTATATTTGGTTTGGATACGAGGA 60.240 42.308 0.00 0.00 42.51 3.71
47 48 6.874134 CCTATATTTGGTTTGGATACGAGGAG 59.126 42.308 0.00 0.00 42.51 3.69
48 49 4.569719 ATTTGGTTTGGATACGAGGAGT 57.430 40.909 0.00 0.00 42.51 3.85
49 50 3.328382 TTGGTTTGGATACGAGGAGTG 57.672 47.619 0.00 0.00 42.51 3.51
50 51 2.253610 TGGTTTGGATACGAGGAGTGT 58.746 47.619 0.00 0.00 42.51 3.55
51 52 2.635915 TGGTTTGGATACGAGGAGTGTT 59.364 45.455 0.00 0.00 42.51 3.32
52 53 3.000727 GGTTTGGATACGAGGAGTGTTG 58.999 50.000 0.00 0.00 42.51 3.33
53 54 3.000727 GTTTGGATACGAGGAGTGTTGG 58.999 50.000 0.00 0.00 42.51 3.77
54 55 1.933021 TGGATACGAGGAGTGTTGGT 58.067 50.000 0.00 0.00 42.51 3.67
55 56 1.822990 TGGATACGAGGAGTGTTGGTC 59.177 52.381 0.00 0.00 42.51 4.02
56 57 1.822990 GGATACGAGGAGTGTTGGTCA 59.177 52.381 0.00 0.00 0.00 4.02
57 58 2.159226 GGATACGAGGAGTGTTGGTCAG 60.159 54.545 0.00 0.00 0.00 3.51
58 59 0.601558 TACGAGGAGTGTTGGTCAGC 59.398 55.000 0.00 0.00 0.00 4.26
59 60 1.374758 CGAGGAGTGTTGGTCAGCC 60.375 63.158 0.00 0.00 0.00 4.85
60 61 1.003233 GAGGAGTGTTGGTCAGCCC 60.003 63.158 0.00 0.00 0.00 5.19
61 62 2.358737 GGAGTGTTGGTCAGCCCG 60.359 66.667 0.00 0.00 35.15 6.13
62 63 2.741092 GAGTGTTGGTCAGCCCGA 59.259 61.111 0.00 0.00 35.15 5.14
63 64 1.374758 GAGTGTTGGTCAGCCCGAG 60.375 63.158 0.00 0.00 35.15 4.63
64 65 3.050275 GTGTTGGTCAGCCCGAGC 61.050 66.667 0.00 0.00 42.75 5.03
65 66 4.680237 TGTTGGTCAGCCCGAGCG 62.680 66.667 0.00 0.00 45.52 5.03
66 67 4.681978 GTTGGTCAGCCCGAGCGT 62.682 66.667 0.00 0.00 45.52 5.07
67 68 3.936203 TTGGTCAGCCCGAGCGTT 61.936 61.111 0.00 0.00 45.52 4.84
68 69 3.469863 TTGGTCAGCCCGAGCGTTT 62.470 57.895 0.00 0.00 45.52 3.60
69 70 3.423154 GGTCAGCCCGAGCGTTTG 61.423 66.667 0.00 0.00 46.67 2.93
70 71 2.665185 GTCAGCCCGAGCGTTTGT 60.665 61.111 0.00 0.00 46.67 2.83
71 72 2.357034 TCAGCCCGAGCGTTTGTC 60.357 61.111 0.00 0.00 46.67 3.18
72 73 3.423154 CAGCCCGAGCGTTTGTCC 61.423 66.667 0.00 0.00 46.67 4.02
82 83 3.437845 CGTTTGTCCGCAGTTTGAG 57.562 52.632 0.00 0.00 0.00 3.02
83 84 0.934496 CGTTTGTCCGCAGTTTGAGA 59.066 50.000 0.00 0.00 0.00 3.27
84 85 1.070577 CGTTTGTCCGCAGTTTGAGAG 60.071 52.381 0.00 0.00 0.00 3.20
85 86 1.264288 GTTTGTCCGCAGTTTGAGAGG 59.736 52.381 0.00 0.00 0.00 3.69
86 87 0.468226 TTGTCCGCAGTTTGAGAGGT 59.532 50.000 0.00 0.00 0.00 3.85
87 88 0.033504 TGTCCGCAGTTTGAGAGGTC 59.966 55.000 0.00 0.00 0.00 3.85
88 89 0.318762 GTCCGCAGTTTGAGAGGTCT 59.681 55.000 0.00 0.00 0.00 3.85
89 90 1.544691 GTCCGCAGTTTGAGAGGTCTA 59.455 52.381 0.00 0.00 0.00 2.59
90 91 1.544691 TCCGCAGTTTGAGAGGTCTAC 59.455 52.381 0.00 0.00 0.00 2.59
91 92 1.546476 CCGCAGTTTGAGAGGTCTACT 59.454 52.381 0.00 0.00 0.00 2.57
92 93 2.028930 CCGCAGTTTGAGAGGTCTACTT 60.029 50.000 0.00 0.00 0.00 2.24
93 94 2.989840 CGCAGTTTGAGAGGTCTACTTG 59.010 50.000 0.00 0.00 0.00 3.16
94 95 3.330267 GCAGTTTGAGAGGTCTACTTGG 58.670 50.000 0.00 0.00 0.00 3.61
95 96 3.866449 GCAGTTTGAGAGGTCTACTTGGG 60.866 52.174 0.00 0.00 0.00 4.12
96 97 3.325135 CAGTTTGAGAGGTCTACTTGGGT 59.675 47.826 0.00 0.00 0.00 4.51
97 98 3.579151 AGTTTGAGAGGTCTACTTGGGTC 59.421 47.826 0.00 0.00 0.00 4.46
98 99 2.992847 TGAGAGGTCTACTTGGGTCA 57.007 50.000 0.00 0.00 0.00 4.02
99 100 3.254093 TGAGAGGTCTACTTGGGTCAA 57.746 47.619 0.00 0.00 0.00 3.18
100 101 3.791320 TGAGAGGTCTACTTGGGTCAAT 58.209 45.455 0.00 0.00 0.00 2.57
101 102 4.168101 TGAGAGGTCTACTTGGGTCAATT 58.832 43.478 0.00 0.00 0.00 2.32
102 103 4.597507 TGAGAGGTCTACTTGGGTCAATTT 59.402 41.667 0.00 0.00 0.00 1.82
103 104 5.073144 TGAGAGGTCTACTTGGGTCAATTTT 59.927 40.000 0.00 0.00 0.00 1.82
104 105 5.953571 AGAGGTCTACTTGGGTCAATTTTT 58.046 37.500 0.00 0.00 0.00 1.94
129 130 2.125106 GGTCACTGACCGGATGGC 60.125 66.667 9.46 1.62 43.14 4.40
130 131 2.125106 GTCACTGACCGGATGGCC 60.125 66.667 9.46 0.00 39.70 5.36
131 132 2.284625 TCACTGACCGGATGGCCT 60.285 61.111 9.46 0.00 39.70 5.19
132 133 2.124983 CACTGACCGGATGGCCTG 60.125 66.667 9.46 0.00 39.70 4.85
133 134 4.101448 ACTGACCGGATGGCCTGC 62.101 66.667 9.46 0.00 39.70 4.85
162 163 4.680702 GTTTGAGACGGGTATAAGAGACC 58.319 47.826 0.00 0.00 36.12 3.85
169 170 1.411041 GGTATAAGAGACCCGGCTGT 58.589 55.000 0.00 0.00 0.00 4.40
170 171 2.590821 GGTATAAGAGACCCGGCTGTA 58.409 52.381 0.00 0.00 0.00 2.74
171 172 2.557490 GGTATAAGAGACCCGGCTGTAG 59.443 54.545 0.00 0.00 0.00 2.74
172 173 2.750141 ATAAGAGACCCGGCTGTAGA 57.250 50.000 0.00 0.00 0.00 2.59
173 174 2.750141 TAAGAGACCCGGCTGTAGAT 57.250 50.000 0.00 0.00 0.00 1.98
174 175 1.115467 AAGAGACCCGGCTGTAGATG 58.885 55.000 0.00 0.00 0.00 2.90
175 176 0.757188 AGAGACCCGGCTGTAGATGG 60.757 60.000 0.00 0.00 0.00 3.51
176 177 1.001760 AGACCCGGCTGTAGATGGT 59.998 57.895 0.00 0.00 0.00 3.55
177 178 1.043673 AGACCCGGCTGTAGATGGTC 61.044 60.000 9.27 9.27 44.64 4.02
178 179 1.001760 ACCCGGCTGTAGATGGTCT 59.998 57.895 0.00 0.00 0.00 3.85
179 180 0.617820 ACCCGGCTGTAGATGGTCTT 60.618 55.000 0.00 0.00 0.00 3.01
180 181 1.342674 ACCCGGCTGTAGATGGTCTTA 60.343 52.381 0.00 0.00 0.00 2.10
181 182 1.971357 CCCGGCTGTAGATGGTCTTAT 59.029 52.381 0.00 0.00 0.00 1.73
182 183 2.289072 CCCGGCTGTAGATGGTCTTATG 60.289 54.545 0.00 0.00 0.00 1.90
183 184 2.365617 CCGGCTGTAGATGGTCTTATGT 59.634 50.000 0.00 0.00 0.00 2.29
184 185 3.553096 CCGGCTGTAGATGGTCTTATGTC 60.553 52.174 0.00 0.00 0.00 3.06
185 186 3.319405 CGGCTGTAGATGGTCTTATGTCT 59.681 47.826 0.00 0.00 0.00 3.41
186 187 4.519350 CGGCTGTAGATGGTCTTATGTCTA 59.481 45.833 0.00 0.00 0.00 2.59
187 188 5.184096 CGGCTGTAGATGGTCTTATGTCTAT 59.816 44.000 0.00 0.00 0.00 1.98
188 189 6.294787 CGGCTGTAGATGGTCTTATGTCTATT 60.295 42.308 0.00 0.00 0.00 1.73
189 190 7.093992 GGCTGTAGATGGTCTTATGTCTATTC 58.906 42.308 0.00 0.00 0.00 1.75
190 191 7.255977 GGCTGTAGATGGTCTTATGTCTATTCA 60.256 40.741 0.00 0.00 0.00 2.57
191 192 8.144478 GCTGTAGATGGTCTTATGTCTATTCAA 58.856 37.037 0.00 0.00 0.00 2.69
192 193 9.469807 CTGTAGATGGTCTTATGTCTATTCAAC 57.530 37.037 0.00 0.00 0.00 3.18
193 194 9.201989 TGTAGATGGTCTTATGTCTATTCAACT 57.798 33.333 0.00 0.00 0.00 3.16
197 198 9.988815 GATGGTCTTATGTCTATTCAACTATGT 57.011 33.333 0.00 0.00 0.00 2.29
206 207 9.712305 ATGTCTATTCAACTATGTAATGCTACC 57.288 33.333 0.00 0.00 0.00 3.18
207 208 8.700973 TGTCTATTCAACTATGTAATGCTACCA 58.299 33.333 0.00 0.00 0.00 3.25
208 209 9.712305 GTCTATTCAACTATGTAATGCTACCAT 57.288 33.333 0.00 0.00 0.00 3.55
213 214 9.461312 TTCAACTATGTAATGCTACCATTTTCT 57.539 29.630 0.00 0.00 41.68 2.52
271 272 1.066502 ACTGCCAACCCACAAAAACAC 60.067 47.619 0.00 0.00 0.00 3.32
274 275 1.202475 GCCAACCCACAAAAACACGAT 60.202 47.619 0.00 0.00 0.00 3.73
380 381 1.224069 AAATGAGCGATCCGATGGCG 61.224 55.000 9.43 0.00 39.14 5.69
385 386 2.662857 CGATCCGATGGCGCACAT 60.663 61.111 10.83 10.68 44.18 3.21
438 439 2.821366 CAGAGCATCACCCGCACC 60.821 66.667 0.00 0.00 37.82 5.01
442 443 2.821366 GCATCACCCGCACCTGAG 60.821 66.667 0.00 0.00 0.00 3.35
481 487 0.581053 GCAATTTTTGTGGCGTGGTG 59.419 50.000 0.00 0.00 0.00 4.17
508 514 0.952497 CCGCGTCGCCTACTAGGATA 60.952 60.000 12.44 0.00 37.67 2.59
687 709 2.997986 ACGACACGGCAAATACCTAAAG 59.002 45.455 0.00 0.00 0.00 1.85
912 1163 0.737715 CCAAGCTCTCCGTCCTTTCG 60.738 60.000 0.00 0.00 0.00 3.46
967 1229 1.066787 TCTTCGTCGAGCAGAGAGAGA 60.067 52.381 0.00 0.00 0.00 3.10
968 1230 1.327460 CTTCGTCGAGCAGAGAGAGAG 59.673 57.143 0.00 0.00 0.00 3.20
969 1231 0.533032 TCGTCGAGCAGAGAGAGAGA 59.467 55.000 0.00 0.00 0.00 3.10
979 1241 3.282021 CAGAGAGAGAGAGAAGGAGGTG 58.718 54.545 0.00 0.00 0.00 4.00
1270 1539 3.344215 GCTGCGCTCATCCGGATG 61.344 66.667 34.42 34.42 40.09 3.51
1275 1544 0.737715 GCGCTCATCCGGATGTATCC 60.738 60.000 36.95 23.58 43.65 2.59
1276 1545 0.108615 CGCTCATCCGGATGTATCCC 60.109 60.000 36.95 22.13 44.24 3.85
1352 1628 1.681538 TTCGAATCGAGGAGAGGGAG 58.318 55.000 5.24 0.00 37.14 4.30
1359 1635 3.320610 TCGAGGAGAGGGAGATGAAAT 57.679 47.619 0.00 0.00 0.00 2.17
1376 1652 7.809238 AGATGAAATATGGGAGAGAATGTTCA 58.191 34.615 0.00 0.00 0.00 3.18
1431 1707 6.577427 GCGAGTTAAATTCGTTTGATTTCTGT 59.423 34.615 11.02 0.00 40.08 3.41
1432 1708 7.201157 GCGAGTTAAATTCGTTTGATTTCTGTC 60.201 37.037 11.02 0.00 40.08 3.51
1467 1744 5.956068 TCCATTCATGTTGAAATCGTTGA 57.044 34.783 0.00 0.00 40.12 3.18
1468 1745 6.513806 TCCATTCATGTTGAAATCGTTGAT 57.486 33.333 0.00 0.00 40.12 2.57
1475 1752 7.028962 TCATGTTGAAATCGTTGATTGAATCC 58.971 34.615 2.26 0.00 32.14 3.01
1485 1762 4.089361 GTTGATTGAATCCCTTGTTCCCT 58.911 43.478 2.26 0.00 0.00 4.20
1487 1764 4.088634 TGATTGAATCCCTTGTTCCCTTG 58.911 43.478 2.26 0.00 0.00 3.61
1490 1767 2.171003 GAATCCCTTGTTCCCTTGTGG 58.829 52.381 0.00 0.00 0.00 4.17
1576 1874 2.161609 GGGCACTACCGATTTTCTGTTG 59.838 50.000 0.00 0.00 40.62 3.33
1577 1875 2.812011 GGCACTACCGATTTTCTGTTGT 59.188 45.455 0.00 0.00 0.00 3.32
1579 1877 4.453136 GGCACTACCGATTTTCTGTTGTTA 59.547 41.667 0.00 0.00 0.00 2.41
1581 1879 6.349033 GGCACTACCGATTTTCTGTTGTTATT 60.349 38.462 0.00 0.00 0.00 1.40
1582 1880 7.081976 GCACTACCGATTTTCTGTTGTTATTT 58.918 34.615 0.00 0.00 0.00 1.40
1583 1881 7.060633 GCACTACCGATTTTCTGTTGTTATTTG 59.939 37.037 0.00 0.00 0.00 2.32
1624 1932 3.736100 CACAAGCGGCGCAATGGA 61.736 61.111 35.02 0.00 0.00 3.41
1665 1973 6.461509 CCCATTTTGTTAAGATAGATGGGTGC 60.462 42.308 15.06 0.00 44.54 5.01
1677 1985 2.359850 GGGTGCAGCATCGTGGAA 60.360 61.111 19.06 0.00 0.00 3.53
1678 1986 2.690778 GGGTGCAGCATCGTGGAAC 61.691 63.158 19.06 0.00 0.00 3.62
1679 1987 1.965930 GGTGCAGCATCGTGGAACA 60.966 57.895 11.86 0.00 35.74 3.18
1681 1989 0.110056 GTGCAGCATCGTGGAACAAG 60.110 55.000 0.00 0.00 44.16 3.16
1689 1997 2.074547 TCGTGGAACAAGATCGAACC 57.925 50.000 0.00 0.00 42.83 3.62
1692 2000 1.060729 TGGAACAAGATCGAACCCCA 58.939 50.000 0.00 0.00 31.92 4.96
1693 2001 1.271163 TGGAACAAGATCGAACCCCAC 60.271 52.381 0.00 0.00 31.92 4.61
1694 2002 1.271163 GGAACAAGATCGAACCCCACA 60.271 52.381 0.00 0.00 0.00 4.17
1695 2003 2.618045 GGAACAAGATCGAACCCCACAT 60.618 50.000 0.00 0.00 0.00 3.21
1696 2004 2.879103 ACAAGATCGAACCCCACATT 57.121 45.000 0.00 0.00 0.00 2.71
1697 2005 2.711542 ACAAGATCGAACCCCACATTC 58.288 47.619 0.00 0.00 0.00 2.67
1698 2006 2.017049 CAAGATCGAACCCCACATTCC 58.983 52.381 0.00 0.00 0.00 3.01
1699 2007 1.285280 AGATCGAACCCCACATTCCA 58.715 50.000 0.00 0.00 0.00 3.53
1701 2009 2.158755 AGATCGAACCCCACATTCCATC 60.159 50.000 0.00 0.00 0.00 3.51
1702 2010 0.107897 TCGAACCCCACATTCCATCG 60.108 55.000 0.00 0.00 0.00 3.84
1703 2011 0.392461 CGAACCCCACATTCCATCGT 60.392 55.000 0.00 0.00 0.00 3.73
1704 2012 1.379527 GAACCCCACATTCCATCGTC 58.620 55.000 0.00 0.00 0.00 4.20
1705 2013 0.034477 AACCCCACATTCCATCGTCC 60.034 55.000 0.00 0.00 0.00 4.79
1706 2014 0.914417 ACCCCACATTCCATCGTCCT 60.914 55.000 0.00 0.00 0.00 3.85
1707 2015 0.255890 CCCCACATTCCATCGTCCTT 59.744 55.000 0.00 0.00 0.00 3.36
1708 2016 1.382522 CCCACATTCCATCGTCCTTG 58.617 55.000 0.00 0.00 0.00 3.61
1709 2017 1.065491 CCCACATTCCATCGTCCTTGA 60.065 52.381 0.00 0.00 0.00 3.02
1710 2018 2.421952 CCCACATTCCATCGTCCTTGAT 60.422 50.000 0.00 0.00 0.00 2.57
1711 2019 2.615447 CCACATTCCATCGTCCTTGATG 59.385 50.000 0.00 0.00 44.29 3.07
1719 2027 3.499737 GTCCTTGATGGGCGCGTG 61.500 66.667 8.43 0.00 36.20 5.34
1720 2028 4.776322 TCCTTGATGGGCGCGTGG 62.776 66.667 8.43 0.00 36.20 4.94
1721 2029 4.776322 CCTTGATGGGCGCGTGGA 62.776 66.667 8.43 0.00 0.00 4.02
1723 2031 3.958147 CTTGATGGGCGCGTGGAGT 62.958 63.158 8.43 0.00 0.00 3.85
1724 2032 2.572095 CTTGATGGGCGCGTGGAGTA 62.572 60.000 8.43 0.00 0.00 2.59
1725 2033 2.585247 GATGGGCGCGTGGAGTAC 60.585 66.667 8.43 0.00 0.00 2.73
1729 2037 1.324740 TGGGCGCGTGGAGTACTATT 61.325 55.000 8.43 0.00 0.00 1.73
1730 2038 0.874607 GGGCGCGTGGAGTACTATTG 60.875 60.000 8.43 0.00 0.00 1.90
1871 2265 6.206498 ACGTTGGCAGTAAAGATTTTCTTTC 58.794 36.000 5.81 0.14 42.60 2.62
2037 2886 3.272847 ACCCATGACCCAACCCCC 61.273 66.667 0.00 0.00 0.00 5.40
2038 2887 3.272042 CCCATGACCCAACCCCCA 61.272 66.667 0.00 0.00 0.00 4.96
2039 2888 2.037208 CCATGACCCAACCCCCAC 59.963 66.667 0.00 0.00 0.00 4.61
2040 2889 2.547595 CCATGACCCAACCCCCACT 61.548 63.158 0.00 0.00 0.00 4.00
2041 2890 1.000896 CATGACCCAACCCCCACTC 60.001 63.158 0.00 0.00 0.00 3.51
2042 2891 2.238701 ATGACCCAACCCCCACTCC 61.239 63.158 0.00 0.00 0.00 3.85
2043 2892 2.856988 GACCCAACCCCCACTCCA 60.857 66.667 0.00 0.00 0.00 3.86
2044 2893 2.121042 ACCCAACCCCCACTCCAT 60.121 61.111 0.00 0.00 0.00 3.41
2045 2894 2.211468 GACCCAACCCCCACTCCATC 62.211 65.000 0.00 0.00 0.00 3.51
2090 2944 1.323412 AAGTCACGTCTGCTCTCTGT 58.677 50.000 0.00 0.00 0.00 3.41
2198 3059 0.958822 GACGGTGGCCAATTTCAACT 59.041 50.000 7.24 0.00 0.00 3.16
2201 3062 0.681175 GGTGGCCAATTTCAACTGCT 59.319 50.000 7.24 0.00 0.00 4.24
2218 3079 4.312443 ACTGCTTTGATGCTTTCCAAATG 58.688 39.130 0.00 0.00 32.60 2.32
2219 3080 4.039488 ACTGCTTTGATGCTTTCCAAATGA 59.961 37.500 0.00 0.00 32.60 2.57
2220 3081 4.562082 TGCTTTGATGCTTTCCAAATGAG 58.438 39.130 0.00 0.00 32.60 2.90
2221 3082 4.281435 TGCTTTGATGCTTTCCAAATGAGA 59.719 37.500 0.00 0.00 32.60 3.27
2222 3083 5.221481 TGCTTTGATGCTTTCCAAATGAGAA 60.221 36.000 0.00 0.00 32.60 2.87
2223 3084 5.697633 GCTTTGATGCTTTCCAAATGAGAAA 59.302 36.000 0.00 0.00 32.60 2.52
2224 3085 6.203338 GCTTTGATGCTTTCCAAATGAGAAAA 59.797 34.615 0.00 0.00 33.06 2.29
2225 3086 7.254863 GCTTTGATGCTTTCCAAATGAGAAAAA 60.255 33.333 0.00 0.00 33.06 1.94
2226 3087 8.680039 TTTGATGCTTTCCAAATGAGAAAAAT 57.320 26.923 0.00 0.00 33.06 1.82
2227 3088 8.680039 TTGATGCTTTCCAAATGAGAAAAATT 57.320 26.923 0.00 0.00 33.06 1.82
2228 3089 9.775854 TTGATGCTTTCCAAATGAGAAAAATTA 57.224 25.926 0.00 0.00 33.06 1.40
2229 3090 9.775854 TGATGCTTTCCAAATGAGAAAAATTAA 57.224 25.926 0.00 0.00 33.06 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.046472 TATAGGGCGGATATGGGGCG 61.046 60.000 0.00 0.00 0.00 6.13
9 10 1.435256 ATATAGGGCGGATATGGGGC 58.565 55.000 0.00 0.00 0.00 5.80
10 11 3.435026 CCAAATATAGGGCGGATATGGGG 60.435 52.174 0.00 0.00 0.00 4.96
11 12 3.202151 ACCAAATATAGGGCGGATATGGG 59.798 47.826 0.00 6.65 0.00 4.00
12 13 4.503714 ACCAAATATAGGGCGGATATGG 57.496 45.455 0.00 0.00 0.00 2.74
13 14 5.125417 CCAAACCAAATATAGGGCGGATATG 59.875 44.000 0.00 0.00 0.00 1.78
14 15 5.014755 TCCAAACCAAATATAGGGCGGATAT 59.985 40.000 0.00 0.00 0.00 1.63
15 16 4.351407 TCCAAACCAAATATAGGGCGGATA 59.649 41.667 0.00 0.00 0.00 2.59
16 17 3.139397 TCCAAACCAAATATAGGGCGGAT 59.861 43.478 0.00 0.00 0.00 4.18
17 18 2.510382 TCCAAACCAAATATAGGGCGGA 59.490 45.455 0.00 0.00 0.00 5.54
18 19 2.938838 TCCAAACCAAATATAGGGCGG 58.061 47.619 0.00 0.00 0.00 6.13
19 20 4.153475 CGTATCCAAACCAAATATAGGGCG 59.847 45.833 0.00 0.00 0.00 6.13
20 21 5.310451 TCGTATCCAAACCAAATATAGGGC 58.690 41.667 0.00 0.00 0.00 5.19
21 22 5.938125 CCTCGTATCCAAACCAAATATAGGG 59.062 44.000 0.00 0.00 0.00 3.53
22 23 6.765403 TCCTCGTATCCAAACCAAATATAGG 58.235 40.000 0.00 0.00 0.00 2.57
23 24 7.385205 CACTCCTCGTATCCAAACCAAATATAG 59.615 40.741 0.00 0.00 0.00 1.31
24 25 7.147620 ACACTCCTCGTATCCAAACCAAATATA 60.148 37.037 0.00 0.00 0.00 0.86
25 26 6.055588 CACTCCTCGTATCCAAACCAAATAT 58.944 40.000 0.00 0.00 0.00 1.28
26 27 5.046159 ACACTCCTCGTATCCAAACCAAATA 60.046 40.000 0.00 0.00 0.00 1.40
27 28 4.261801 CACTCCTCGTATCCAAACCAAAT 58.738 43.478 0.00 0.00 0.00 2.32
28 29 3.071892 ACACTCCTCGTATCCAAACCAAA 59.928 43.478 0.00 0.00 0.00 3.28
29 30 2.635915 ACACTCCTCGTATCCAAACCAA 59.364 45.455 0.00 0.00 0.00 3.67
30 31 2.253610 ACACTCCTCGTATCCAAACCA 58.746 47.619 0.00 0.00 0.00 3.67
31 32 3.000727 CAACACTCCTCGTATCCAAACC 58.999 50.000 0.00 0.00 0.00 3.27
32 33 3.000727 CCAACACTCCTCGTATCCAAAC 58.999 50.000 0.00 0.00 0.00 2.93
33 34 2.635915 ACCAACACTCCTCGTATCCAAA 59.364 45.455 0.00 0.00 0.00 3.28
34 35 2.232941 GACCAACACTCCTCGTATCCAA 59.767 50.000 0.00 0.00 0.00 3.53
35 36 1.822990 GACCAACACTCCTCGTATCCA 59.177 52.381 0.00 0.00 0.00 3.41
36 37 1.822990 TGACCAACACTCCTCGTATCC 59.177 52.381 0.00 0.00 0.00 2.59
37 38 2.735762 GCTGACCAACACTCCTCGTATC 60.736 54.545 0.00 0.00 0.00 2.24
38 39 1.204941 GCTGACCAACACTCCTCGTAT 59.795 52.381 0.00 0.00 0.00 3.06
39 40 0.601558 GCTGACCAACACTCCTCGTA 59.398 55.000 0.00 0.00 0.00 3.43
40 41 1.367840 GCTGACCAACACTCCTCGT 59.632 57.895 0.00 0.00 0.00 4.18
41 42 1.374758 GGCTGACCAACACTCCTCG 60.375 63.158 0.00 0.00 35.26 4.63
42 43 1.003233 GGGCTGACCAACACTCCTC 60.003 63.158 0.00 0.00 39.85 3.71
43 44 2.883828 CGGGCTGACCAACACTCCT 61.884 63.158 0.00 0.00 40.22 3.69
44 45 2.358737 CGGGCTGACCAACACTCC 60.359 66.667 0.00 0.00 40.22 3.85
45 46 1.374758 CTCGGGCTGACCAACACTC 60.375 63.158 0.00 0.00 40.22 3.51
46 47 2.743718 CTCGGGCTGACCAACACT 59.256 61.111 0.00 0.00 40.22 3.55
47 48 3.050275 GCTCGGGCTGACCAACAC 61.050 66.667 0.00 0.00 40.22 3.32
48 49 4.680237 CGCTCGGGCTGACCAACA 62.680 66.667 5.36 0.00 40.22 3.33
49 50 4.681978 ACGCTCGGGCTGACCAAC 62.682 66.667 5.36 0.00 40.22 3.77
50 51 3.469863 AAACGCTCGGGCTGACCAA 62.470 57.895 5.36 0.00 40.22 3.67
51 52 3.936203 AAACGCTCGGGCTGACCA 61.936 61.111 5.36 0.00 40.22 4.02
52 53 3.423154 CAAACGCTCGGGCTGACC 61.423 66.667 5.36 0.00 36.09 4.02
53 54 2.665185 ACAAACGCTCGGGCTGAC 60.665 61.111 5.36 0.00 36.09 3.51
54 55 2.357034 GACAAACGCTCGGGCTGA 60.357 61.111 5.36 0.00 36.09 4.26
55 56 3.423154 GGACAAACGCTCGGGCTG 61.423 66.667 5.36 0.00 36.09 4.85
64 65 0.934496 TCTCAAACTGCGGACAAACG 59.066 50.000 0.00 0.00 0.00 3.60
65 66 1.264288 CCTCTCAAACTGCGGACAAAC 59.736 52.381 0.00 0.00 0.00 2.93
66 67 1.134220 ACCTCTCAAACTGCGGACAAA 60.134 47.619 0.00 0.00 0.00 2.83
67 68 0.468226 ACCTCTCAAACTGCGGACAA 59.532 50.000 0.00 0.00 0.00 3.18
68 69 0.033504 GACCTCTCAAACTGCGGACA 59.966 55.000 0.00 0.00 0.00 4.02
69 70 0.318762 AGACCTCTCAAACTGCGGAC 59.681 55.000 0.00 0.00 0.00 4.79
70 71 1.544691 GTAGACCTCTCAAACTGCGGA 59.455 52.381 0.00 0.00 0.00 5.54
71 72 1.546476 AGTAGACCTCTCAAACTGCGG 59.454 52.381 0.00 0.00 0.00 5.69
72 73 2.989840 CAAGTAGACCTCTCAAACTGCG 59.010 50.000 0.00 0.00 0.00 5.18
73 74 3.330267 CCAAGTAGACCTCTCAAACTGC 58.670 50.000 0.00 0.00 0.00 4.40
74 75 3.325135 ACCCAAGTAGACCTCTCAAACTG 59.675 47.826 0.00 0.00 0.00 3.16
75 76 3.579151 GACCCAAGTAGACCTCTCAAACT 59.421 47.826 0.00 0.00 0.00 2.66
76 77 3.323979 TGACCCAAGTAGACCTCTCAAAC 59.676 47.826 0.00 0.00 0.00 2.93
77 78 3.583228 TGACCCAAGTAGACCTCTCAAA 58.417 45.455 0.00 0.00 0.00 2.69
78 79 3.254093 TGACCCAAGTAGACCTCTCAA 57.746 47.619 0.00 0.00 0.00 3.02
79 80 2.992847 TGACCCAAGTAGACCTCTCA 57.007 50.000 0.00 0.00 0.00 3.27
80 81 4.828072 AATTGACCCAAGTAGACCTCTC 57.172 45.455 0.00 0.00 0.00 3.20
81 82 5.584551 AAAATTGACCCAAGTAGACCTCT 57.415 39.130 0.00 0.00 0.00 3.69
113 114 2.125106 GGCCATCCGGTCAGTGAC 60.125 66.667 15.24 15.24 36.65 3.67
114 115 2.284625 AGGCCATCCGGTCAGTGA 60.285 61.111 5.01 0.00 40.51 3.41
115 116 2.124983 CAGGCCATCCGGTCAGTG 60.125 66.667 5.01 0.00 40.51 3.66
116 117 4.101448 GCAGGCCATCCGGTCAGT 62.101 66.667 5.01 0.00 40.51 3.41
129 130 4.139420 CTCAAACGCTCGCGCAGG 62.139 66.667 8.75 0.00 44.19 4.85
130 131 3.105782 TCTCAAACGCTCGCGCAG 61.106 61.111 8.75 5.26 44.19 5.18
131 132 3.403057 GTCTCAAACGCTCGCGCA 61.403 61.111 8.75 0.00 44.19 6.09
132 133 4.470050 CGTCTCAAACGCTCGCGC 62.470 66.667 11.65 0.00 45.76 6.86
139 140 7.669070 GGGTCTCTTATACCCGTCTCAAACG 62.669 52.000 0.00 0.00 46.95 3.60
140 141 4.441217 GGGTCTCTTATACCCGTCTCAAAC 60.441 50.000 0.00 0.00 46.95 2.93
141 142 3.703052 GGGTCTCTTATACCCGTCTCAAA 59.297 47.826 0.00 0.00 46.95 2.69
142 143 3.294214 GGGTCTCTTATACCCGTCTCAA 58.706 50.000 0.00 0.00 46.95 3.02
143 144 2.941480 GGGTCTCTTATACCCGTCTCA 58.059 52.381 0.00 0.00 46.95 3.27
150 151 1.411041 ACAGCCGGGTCTCTTATACC 58.589 55.000 1.27 0.00 36.19 2.73
151 152 3.484407 TCTACAGCCGGGTCTCTTATAC 58.516 50.000 1.27 0.00 0.00 1.47
152 153 3.870538 TCTACAGCCGGGTCTCTTATA 57.129 47.619 1.27 0.00 0.00 0.98
153 154 2.750141 TCTACAGCCGGGTCTCTTAT 57.250 50.000 1.27 0.00 0.00 1.73
154 155 2.307768 CATCTACAGCCGGGTCTCTTA 58.692 52.381 1.27 0.00 0.00 2.10
155 156 1.115467 CATCTACAGCCGGGTCTCTT 58.885 55.000 1.27 0.00 0.00 2.85
156 157 0.757188 CCATCTACAGCCGGGTCTCT 60.757 60.000 1.27 0.00 0.00 3.10
157 158 1.043673 ACCATCTACAGCCGGGTCTC 61.044 60.000 1.27 0.00 0.00 3.36
158 159 1.001760 ACCATCTACAGCCGGGTCT 59.998 57.895 1.27 0.00 0.00 3.85
159 160 1.043673 AGACCATCTACAGCCGGGTC 61.044 60.000 1.27 0.00 46.54 4.46
160 161 0.617820 AAGACCATCTACAGCCGGGT 60.618 55.000 0.00 0.00 33.78 5.28
161 162 1.410004 TAAGACCATCTACAGCCGGG 58.590 55.000 2.18 0.00 0.00 5.73
162 163 2.365617 ACATAAGACCATCTACAGCCGG 59.634 50.000 0.00 0.00 0.00 6.13
163 164 3.319405 AGACATAAGACCATCTACAGCCG 59.681 47.826 0.00 0.00 0.00 5.52
164 165 4.946478 AGACATAAGACCATCTACAGCC 57.054 45.455 0.00 0.00 0.00 4.85
165 166 7.661968 TGAATAGACATAAGACCATCTACAGC 58.338 38.462 0.00 0.00 0.00 4.40
166 167 9.469807 GTTGAATAGACATAAGACCATCTACAG 57.530 37.037 0.00 0.00 0.00 2.74
167 168 9.201989 AGTTGAATAGACATAAGACCATCTACA 57.798 33.333 0.00 0.00 0.00 2.74
171 172 9.988815 ACATAGTTGAATAGACATAAGACCATC 57.011 33.333 0.00 0.00 0.00 3.51
180 181 9.712305 GGTAGCATTACATAGTTGAATAGACAT 57.288 33.333 0.00 0.00 0.00 3.06
181 182 8.700973 TGGTAGCATTACATAGTTGAATAGACA 58.299 33.333 0.00 0.00 0.00 3.41
182 183 9.712305 ATGGTAGCATTACATAGTTGAATAGAC 57.288 33.333 0.40 0.00 0.00 2.59
187 188 9.461312 AGAAAATGGTAGCATTACATAGTTGAA 57.539 29.630 19.84 0.00 0.00 2.69
250 251 1.066573 TGTTTTTGTGGGTTGGCAGTG 60.067 47.619 0.00 0.00 0.00 3.66
294 295 4.408921 TGGCTGGCTGTATTAACTGACTAT 59.591 41.667 2.00 0.00 33.84 2.12
364 365 4.950062 GCGCCATCGGATCGCTCA 62.950 66.667 14.56 0.00 44.79 4.26
380 381 1.709147 GCAGATCGGTCACCATGTGC 61.709 60.000 11.03 11.03 32.73 4.57
385 386 2.230994 GAGCTGCAGATCGGTCACCA 62.231 60.000 20.43 0.00 0.00 4.17
438 439 1.122019 CCCCTACCCCCGATTCTCAG 61.122 65.000 0.00 0.00 0.00 3.35
442 443 3.567209 GCCCCCTACCCCCGATTC 61.567 72.222 0.00 0.00 0.00 2.52
744 994 7.730994 TTTTATAGGAGGAAATAATGGGGGA 57.269 36.000 0.00 0.00 0.00 4.81
899 1150 1.811359 GAGAACTCGAAAGGACGGAGA 59.189 52.381 0.00 0.00 0.00 3.71
912 1163 1.355005 GAGAAAGCAGCCGAGAACTC 58.645 55.000 0.00 0.00 0.00 3.01
967 1229 2.938428 ATCTGACCACCTCCTTCTCT 57.062 50.000 0.00 0.00 0.00 3.10
968 1230 3.604582 CAAATCTGACCACCTCCTTCTC 58.395 50.000 0.00 0.00 0.00 2.87
969 1231 2.290577 GCAAATCTGACCACCTCCTTCT 60.291 50.000 0.00 0.00 0.00 2.85
979 1241 0.579156 GATCTCGCGCAAATCTGACC 59.421 55.000 8.75 0.00 0.00 4.02
1270 1539 2.365617 TCTCTCTTCAATGGCGGGATAC 59.634 50.000 0.00 0.00 0.00 2.24
1275 1544 1.753649 TCTCTCTCTCTTCAATGGCGG 59.246 52.381 0.00 0.00 0.00 6.13
1276 1545 2.687425 TCTCTCTCTCTCTTCAATGGCG 59.313 50.000 0.00 0.00 0.00 5.69
1352 1628 8.455903 TTGAACATTCTCTCCCATATTTCATC 57.544 34.615 0.00 0.00 0.00 2.92
1359 1635 8.054572 TCAATCAATTGAACATTCTCTCCCATA 58.945 33.333 13.09 0.00 43.26 2.74
1431 1707 3.095332 TGAATGGAATGGCAAAATCGGA 58.905 40.909 0.00 0.00 0.00 4.55
1432 1708 3.523606 TGAATGGAATGGCAAAATCGG 57.476 42.857 0.00 0.00 0.00 4.18
1467 1744 3.834231 CACAAGGGAACAAGGGATTCAAT 59.166 43.478 0.00 0.00 0.00 2.57
1468 1745 3.230134 CACAAGGGAACAAGGGATTCAA 58.770 45.455 0.00 0.00 0.00 2.69
1485 1762 2.026262 GCCTCTCCCAATTACTCCACAA 60.026 50.000 0.00 0.00 0.00 3.33
1487 1764 1.840635 AGCCTCTCCCAATTACTCCAC 59.159 52.381 0.00 0.00 0.00 4.02
1490 1767 1.488393 AGCAGCCTCTCCCAATTACTC 59.512 52.381 0.00 0.00 0.00 2.59
1624 1932 1.072266 TGGGATAGGGTTTGCTGTGT 58.928 50.000 0.00 0.00 0.00 3.72
1665 1973 1.325640 CGATCTTGTTCCACGATGCTG 59.674 52.381 0.00 0.00 0.00 4.41
1677 1985 2.618045 GGAATGTGGGGTTCGATCTTGT 60.618 50.000 0.00 0.00 0.00 3.16
1678 1986 2.017049 GGAATGTGGGGTTCGATCTTG 58.983 52.381 0.00 0.00 0.00 3.02
1679 1987 1.633432 TGGAATGTGGGGTTCGATCTT 59.367 47.619 0.00 0.00 0.00 2.40
1681 1989 2.222027 GATGGAATGTGGGGTTCGATC 58.778 52.381 0.00 0.00 34.97 3.69
1682 1990 1.475034 CGATGGAATGTGGGGTTCGAT 60.475 52.381 0.00 0.00 0.00 3.59
1683 1991 0.107897 CGATGGAATGTGGGGTTCGA 60.108 55.000 0.00 0.00 0.00 3.71
1684 1992 0.392461 ACGATGGAATGTGGGGTTCG 60.392 55.000 0.00 0.00 0.00 3.95
1685 1993 1.379527 GACGATGGAATGTGGGGTTC 58.620 55.000 0.00 0.00 0.00 3.62
1686 1994 0.034477 GGACGATGGAATGTGGGGTT 60.034 55.000 0.00 0.00 0.00 4.11
1689 1997 1.065491 TCAAGGACGATGGAATGTGGG 60.065 52.381 0.00 0.00 0.00 4.61
1698 2006 2.537560 GCGCCCATCAAGGACGATG 61.538 63.158 0.00 0.00 42.09 3.84
1699 2007 2.203070 GCGCCCATCAAGGACGAT 60.203 61.111 0.00 0.00 41.22 3.73
1702 2010 3.499737 CACGCGCCCATCAAGGAC 61.500 66.667 5.73 0.00 41.22 3.85
1703 2011 4.776322 CCACGCGCCCATCAAGGA 62.776 66.667 5.73 0.00 41.22 3.36
1704 2012 4.776322 TCCACGCGCCCATCAAGG 62.776 66.667 5.73 0.00 37.03 3.61
1705 2013 2.572095 TACTCCACGCGCCCATCAAG 62.572 60.000 5.73 0.00 0.00 3.02
1706 2014 2.651105 TACTCCACGCGCCCATCAA 61.651 57.895 5.73 0.00 0.00 2.57
1707 2015 3.071837 TACTCCACGCGCCCATCA 61.072 61.111 5.73 0.00 0.00 3.07
1708 2016 1.731433 TAGTACTCCACGCGCCCATC 61.731 60.000 5.73 0.00 0.00 3.51
1709 2017 1.113517 ATAGTACTCCACGCGCCCAT 61.114 55.000 5.73 0.00 0.00 4.00
1710 2018 1.324740 AATAGTACTCCACGCGCCCA 61.325 55.000 5.73 0.00 0.00 5.36
1711 2019 0.874607 CAATAGTACTCCACGCGCCC 60.875 60.000 5.73 0.00 0.00 6.13
1712 2020 0.101759 TCAATAGTACTCCACGCGCC 59.898 55.000 5.73 0.00 0.00 6.53
1715 2023 5.753438 TCATTCAATCAATAGTACTCCACGC 59.247 40.000 0.00 0.00 0.00 5.34
1716 2024 7.770801 TTCATTCAATCAATAGTACTCCACG 57.229 36.000 0.00 0.00 0.00 4.94
1717 2025 8.562892 CCATTCATTCAATCAATAGTACTCCAC 58.437 37.037 0.00 0.00 0.00 4.02
1718 2026 8.493607 TCCATTCATTCAATCAATAGTACTCCA 58.506 33.333 0.00 0.00 0.00 3.86
1719 2027 8.908786 TCCATTCATTCAATCAATAGTACTCC 57.091 34.615 0.00 0.00 0.00 3.85
1840 2234 6.673154 ATCTTTACTGCCAACGTAATTACC 57.327 37.500 10.01 0.00 0.00 2.85
1871 2265 0.385974 CCGCTTGTGCCTCTTTTTCG 60.386 55.000 0.00 0.00 35.36 3.46
2027 2432 2.121042 ATGGAGTGGGGGTTGGGT 60.121 61.111 0.00 0.00 0.00 4.51
2198 3059 4.281435 TCTCATTTGGAAAGCATCAAAGCA 59.719 37.500 0.00 0.00 36.49 3.91
2201 3062 8.680039 ATTTTTCTCATTTGGAAAGCATCAAA 57.320 26.923 0.00 0.00 37.29 2.69



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.