>input_sequence_86137
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-------------------------------------------------------------ATGGGGAAGTACGTGGAGC
TGCTGGACATGGGGGTGCGCATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGACGGCCCGGATGTACTACCACCCTCCC
GCCTCCTCCTCGGCCGCCCCCGGCGCCGGCGACGCCGGCGGGATGGTGCCCGGCGAAGGAGG---CGCCGTGGCCATGGC
CATGATGAAGAGGCAGCAGCGGGCCGCCATCGACGCCACGGAGATTATTCTCTACACCGTCGTCTAG-------------
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>chr4D_1_TraesCS4D01G249000
GCCCGGGCCGCCCCATATCCGCCCTATATTTGGTTTGGATACGAGGAGTGTTGGTCAGCCCGAGCGTTTGTCCGCAGTTT
GAGAGGTCTACTTGGGTCAATTTTTTGTGACCGGTCACTGACCGGATGGCCTGCGCGAGCGTTTGAGACGGGTATAAGAG
ACCCGGCTGTAGATGGTCTTATGTCTATTCAACTATGTAATGCTACCATTTTCTAAAAAAAAAGGTAATGCTACCATGGC
AACAAAAAAACACTGCCAACCCACAAAAACACGATAAATGCCTAAAAGTAATAAATAGTCAGTTAATACAGCCAGCCAGG
CGAAGAAAATAGTTAACATTCTCCATTATTTCATTTAAAAAAAATGAGCGATCCGATGGCGCACATGGTGACCGATCTGC
AGCTCGACCGGTCGACCGACGCAGAGCATCACCCGCACCTGAGAATCGGGGGTAGGGGGCGGG-----CAATTTTTGTGG
CGTGGTGCCGATAGCCGCGTCGCCTACTAGGATAGTTCGCGGAAGCGTCGTTTCGTTTTCAAGCATGTGAAAAAACCGTC
CAAGGAAATGAACGCGAGAAGGCAACAAAAGGCTCTACGAAGCGAACCGCCGACGCGTCTGTGCTGTGTCAAGCACGGAA
AACCTAACGGACGCCAACCCAGGCCCAG--------CCCACGA--------CACGGCAAATACCTAAAGACATTAATTAT
-------------AATCAA-------------------------------------------------------------
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-------------------------------------------------------------------------TAAATAC
GGCCAGCCAGGTCAAGGAAAAAAA-TTAAAATCTCCCCCATTATTTCCTCCTATAAAAGGCCCGCCCC-CTCCTCCATAG
CCTCCCCAAGCATGAGCTCCTCTCCCCTGCTCTCCTCCACCCCTCCCATGGCCGCCCCCAGTTCCTGGGCCTCCCCGTTC
CACGAAAAGAGAGCTTAGCGCTACCAAGCTCTCCGTCCTTTCGAGTTCTCGGCTGCTTTC----TCCGTC---CCGGTCA
TCAATCTTCGTCGAGCAGAGAGA----GAGAGAAGGAGGTGGTCAGATTTGCGCGAGATCCATGGGGAAGTACGTGGAGC
TGCTGGACATGGGGGTGCGCATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGACGGCCCGGATGTACTACCACCCTCCC
GCCTCCTCCTCGGCCGCCCCCGGCGCCGGCGACGCCGGCGGGATGGTGCCCGGCGAAGGAGG---CGCCGTGGCCATGGC
CATGATGAAGAGGCAGCAGCGGGCCGCCATCGACGCCACGGAGATTATTCTCTACACCGTCGTCTAGGCCGGCTGC-TG-
--CTGCGCTCATCCGGATGTATCCCGCCATTGAAGAGAGAGA------GAGAGATGCTATCTTCTTTTATTG-TACTTTT
GTTTTATTTTCGAATCGAGGAGAGGGAGATGAAATATGGGAGAGAATGTTCAATTGATTGAATGAATGGATTGAAGAATT
TGCGAGTTAAATTCGTTTGATTTCTGTC-CGATTTTGCCATTCCATTCATGTTGAAATCGTTGATTGAATCCCTTGTTCC
CTTGTGGA-----------------GTAATTGGGAGAGGCTGCTCACAACAAGAGTCTCTCTCTTTATTT----TTACTT
CAAAAAAGTTAGGGGCACTACCGATTTTCTGTTGTTATTTG-----TTGTTATCCCTTA-----AAAAAAGAGGCACAAG
CGGCGCAATGGACACAGCAAACCCTATCCCATTTTGTTAAGATAGATGGGTGCAGCATCGTGGAACAAGATCGAACCCCA
CATTCCATCGTCCTTGATGGGCGCGTGGAGTACTATTGATTGAATGAATGGATTGAAGAATTTG----------------
-------------------------------------------------CAAGTTAAATTTGTTTGATATCTGATGCGAT
TTTGCCATTCATGTTTCAAATCGTT-------GAATGAATA--------------GGATTTTTTTTCTGCTGTGGTAATT
ACGTTGGCAGTAAAGATTTTCTTTCGAAAAAGAGGCACAAGCGGCGCAACGGGCACAGCAAAATCCTATTCCACTGTCAC
CGGAGGATGGTGGAACAAGAAGAT------CCGTTCCGTCGTCCTCGATGGGCGCGTCCGCGCGTGGCAGCCGCAAGTCG
CAAGATCTGCCGG-----CCCCCCACCCATGA------------------------------------------------
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----------------------------------------------------------------------------CCCA
ACCCCCACTCCATCCCGA-----TGGTGGGAGTACTACTTCTGAAAGTCACGTCTGCTCTCTGT---CTGCTCTGCGCGG
TCGTTCCCGCGGTGGGGTGGATGGTGGTGCAGGGCGCAACAGGGGGAGG----CACCGACGCGACCCAGGCGGACCGCGG
ACGGTGGCCAATTTCAACTGCTTTGATGCTTTCCAAATGAGAAAAATTAAAATTTAATGGACG
>chr4B_225
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----------------------------------------------------------------GTAATGCTGCCATGGC
AACAAAAAAA-ACTGCCAACCCACAAAAACAAGACAAATGCCTAAAAGTAATAATTAGTCAGTTAATACAGCCAGCCAGG
CGAAGAAAATAGTTAGTATTCTCCATTATTTCATTCTAAAAAAAGGAGCGATCCGATGGCCCACAGGGTGACCGATCTGC
AGCTCGACCGGTTGACCGACGCAGAGCATCACCCGCACTTGAAAATCGGGGGTAGGGGGCGGG-----CAATTTTTGTGG
CGTGGTCCCGATAGCCGCGTCGC-TACTAGGATGGCTCGCGGAAGCATCGTTTCGATTTCAAGCATGTGAAAAAACCATC
CAAGGAAATGAACGCGAGAAGGCAACAAAAGGCTCTACGAAGCGAACCGCCGACGCGTCTGTGCTGTGTTGAGCACGG-A
AACCTAACGGACGCCAACCCAGGCCCAGGCGCCCAGCCCACGAGGCGGAAACACGGCAAATACCTAAAAATAATAAT--T
-------------AATCAT-------------------------------------------------------------
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-------------------------------------------------------------------------TTAATAC
GGACAGCCAGGTCAAGGAAATAATTAAAATCT-CCCCCGTTTATTTCCTCCTATAAAACGCCCTCCCC-TTCCTCCATAG
CTTCCCCAAGCATGAGCTCCTCTCCCCTGCTCTCCTCCACCCCTCCCATGGCCGCCCCCAGTTCCTGGGCCTCCCCGTTC
CACGAAAAGAGAGCTTAGCGCTACCAAGCCCTCCGTTCTTTCCAGTTCTCGGCTGCTTTC----TCCGTC---CCGGTCA
TCAATCTTCGTCGAGCAGAGAGA----G---GAAGGAGGTCGTCAGATTCGCGCGAGATCCATGGGGAAGTACGTGGAGC
TGCTGGATATGGGGGTGCGCATCGCCGCGCGGTTCCACTCCCACTGCCCTCAGACGGCCCGGATGTACTACCACCCTCCC
GCTTCCTCCTCGGCCGCCCCCGGCGCCGTCGACGGCGGCGGGATGGTGCCCGGAGA---AGG---CGCCGTGGCCATGGC
CATGATGAAGAGGCAGCAGCGGGCCGCCATCGACGCCACGGAGATTATTCTCTACACCGTCGTCTAGGCCGG----TTGC
TTCTGAGCTCGTCCGGATTTATCGTGCCATTGAA-------GAGAGAGGAGAGGTGTTATCTTCTTTTATTG-TACTTCT
GTTTTACTTCCGAATCGA-GAGAGGGAAATGAAAGATGGGAGACAATGTTTGATTGATTGAATGAACGGATTGAAGAATT
TGCAAGTTAAATTCGTTTGGTTTCTGATGTGATTTTGCCATTCCACTCATGTTGAAATCGTTGCCTGAATCTCTTGTTCC
CGTTTGTATTTCTT----TCCCAGCGTAATTGGTAGAGGCTCCTCATAACAAGAGTCTCTCTTTTATTTTTTTATTACTT
CAAAAAAGTTGAGGGCACTACCGATTTTCTGTTTCGTTGATGTTATTTGTTATCCCTTTATTAGAAAAGAGAGGCACAAG
CGGCGCATTGGGCACAGCAAACCCTATTCCATTGTGTTAAGATAGATGGGTGGAGTGTCGTGGATTGAATATATACTCCC
TCCATTCTAAATTACTCGTCGCTAAAATGGATGTATCTAGAACTAAATTACATCTAGATACATCCATACGTGCGACAAGT
AATTCGGAACGGAAGTAGATGGATGGCGCATTGGGCACAGCAAACCCTACAAGTTAAATTTGTTTGTT-TCTGATGCGAT
TTTGCCATTCCTGTTTCAAATCGTT-------GATTGAATATGCTATTCCCGTTTGGATTTTTTTTCTGCTGTAGTAATT
ACGTTGGCAGTAAAGATTTTCTTTAGAAAAAGAGGCACAAGCGGCGCAATGGGCAGAGCAAAATCCTATTCCATTGTCAC
CGGAGCATGGTGGAACAAGAAAATCGAACCCCATTCCGTCGTCCTCGACGG--------GCGCGTGGTAGCCGCAAGTCG
CAAGATCTGCCCTGCCGCCCCCCCACCCAAACCCTCCTT-----------------------------------------
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--CCCTCTCGA---CCGATGGTCTGGTGGGAGTACTACTTCTGAAAGTCACGTCTGCTTGGTCCGC--------------
---------------GGTGGGT-GTGGTGCAGGGCGCAACAGGGGGAGG----CACCGACGCAGGCGCAG------GCGG
ACGGTGCCCAATTTCAACAGCCTTGATGCTTTCCAAAT-------------------------
>chr7B_327
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------AAATAGTTAACATTATCCATTATTTCATTTCTAAAAAAGGAGCGATCCGATGGCCCACAGGGTGACCGATCTGC
AGCTCGACCGGTCGACCGACGCA------CACCCGCACTTAAAAATCGGAGGCAGGGGGCGGGCGTCCCAATTTTTGTGG
CGTGGTCCCGATAGCCGCGTCGCCTACAAGGATGGTTCCCGGAAGCGTCGTTTCGTTTTCAAGCATGTGAAAAAACCGTT
-----------ACGCAAGAAAGCAACGAAAGGCTCTACGAAGCGAACCGCCGACGCGTCCGTCCTGTGTTACGCACGGAA
AACCTAACTGACGCCAACCCAGGCCCAG--------CCCACGAGGCGAAAACATGGCAAATACCTAATAAAAATATTAAT
TGCTAAAAAAAACCTACTTAAATTATATTACAAGTCATATATTACAAAAAATATACCAACATAAACTTCGGAGTTTCTAC
TTTCAAAAGGTATAATTTTTGTGTTATATAGTTTATATTAGGGTGATAAAATTGACAACCTAAATATACGCGTAGGACTT
GTAAACTGAAACGGAGGTAGTACTAAAAATATTAATTACTCAATCAATACGGCCAGCTGCCTAAAAAAAGAAGTAAATAC
GGCCAGCCAGGTCAAGGAAAAAAAATTAAAATCCCCCCGTTTATTTCCTGCTATAAAACGCCCTCCCCCCTCCTCCATAG
CTTCCCCAAGCATGAGCTCCTCTCCCCTGCTCTCCTCCACACCTCCCATGGCCGCCCCCAGTTCCTGGGCCTCCCCGTTC
CACGAAAAGAGAGCTTAGCGCTACCAAGCCCTCCGTC-------------GGCTGCTTTCTTGGTCCGTC---CCGGTCG
TCAATCTTCGTCGAGCGGAGAGG----G---GAAGGAGGTCGTCAGATTTGCGCGAGATCCATGGGGAAGTACGTGGAGC
TGCTGGACATGGGGGTGCGTATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGACGGCCCGGATGTACTATCACCCTCCC
GCCTCCGCCTCGGCCGCCCCCGGCGCCGGCCACGGCGGCGGGATGGTGCCCGGAGA---AGGAGGCGCCGTGGCCATGGC
CATGATGAAGAGGCAGCGGCGGGCCGTCATCGACGCCACGGAGATTATTCTCTACACCGTCGTCTAGGCGGGTTGC-TGC
TGCTGCGCTCATCCGGATTTATCGTGCCATTGAAGAGAGAGGAGAGAGGAGAGGTGTTATCTTCTTTTATTG-TACTTCT
GTTTTACTTTCGAATCGA-GAGAGGGAAATGGAAGATGGGAGTGAATGTTCGATTGATTGAATGAATGGATTGAAGAATT
TGCAAGTTAAATTCGTTTGATCTCCGATGCGATTTTGCCATTCCATTCATGTTGAAATCGTTGCCTGAATCTCTTGGTTC
CCTTTGTGAATTTTTTTCTCCCAACGTAATTGGGAGTGGCTGCTCACAACAAGAGCCTCCCTCTTTATTTTTTACTCCCA
TCAAAAGTTAAAGGGCACTACCGATTTTCTCTTTCGTTGCCGT-------------TTA-----AAAAAAGAGGCA-AAG
CGGCGCAATGGG--------------------------------------------------------------------
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-----------------------------------------------TACAAGTTAAATTTGTTTGATATCTGATGCGAT
TTTGTTTGATATCTTATTCCCGTTTGGATAACGATTGAATATCTTATTCCCGTTTGGATTTTTTTTCTGCTGCAGTAATT
ACGTTGGCAGTAAAGATTTTCTTTAGGAGAAGAGGCGCAAGCGGCGCAACGGGCACAGCAAAATCCTATTCCACTGTCAC
CGGAGG--------------------------------------------------------------------------
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>chr4A_493
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-----------------CGTCGC-TACTAGCATGGCTCCCGGAAGCGTCGTTTCGTTTTCAAGCATGTGAAAAAACCATC
CAAAGCAATGAACGCGAGAAGGCAACAAAAGGCTCTACGAAGCGAACCGCCGACGCGTCTCTCCTGTATCAAGCACGG-A
AACCTAACGGACGCCAACCCAGGCCCAG--------CCCACGA--------CACGGCAAATACCTAAAAACATTAATTAT
CAAAAAAAAATATAATCAA-------------------------------------------------------------
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-------------------------------------------------------------------------TCAATAC
GGCCGGCCAGGTCAAGGAAAA--AATTAAAATCCCCCCGTTTATTTCCTGCTATAAAAGGCCCGCCCCCGTCCTCCATAG
CCTCCCCAAGCATGAGCTCCTCTCCCCCGCTCTCCTCCACCCCTCCCATGGCCGCCCCCAGCTCCTGGGCCTCCCCGTTC
CACGAAAAGAGAGCTTAGCGCTGCCGAGCCCTCCGTCCTCTCCACTTCCCGGCTGCTTTC----TCCGTCCGTCCGGTCG
TCAATCTTCGTCGAGCAGAGAGAGGGAG---GGAGGAGGTCGTCAGATTCGCGCGAGATCCATGGGGAAGTACGTGGAGC
TGCTGGACATGGGGGTGCGCATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGACGGCCCGCATGTACTACCACCCCCCC
GCCTCCTCCTCCGCCGCCCCCGGCGCCGGCGACGGCGGCCGGATGGTGCCCGGAGA---AGG---CGCCGTGGCCATGGC
CATGATGAAGAGGCAGCAGCGGGCCGCCATCGACGCCACGGAGATCATCCTCTACACCGTCGTCTAGGCCGGCCGGTTGC
TGCTGCGCTCATCCGGATTTATCGTACCATTGAAGG--GAGA------GAGAGATGCTATCTTATTTTATTGTTACCTTT
GTTTTATTTTCGAATCGAGGAGAGGGAAATGAAAGACGGGAGTGAATGTTCGATTGATTGAATGAATGGATTGAAGAATT
CGCGAGTTAAATTCGTTTGATTTCCGATGCGTTTTTGCCATTCG-----TGTTGAAACCGTCCCCTTTCCGATATT----
------------TT----TTCCGGCGTGATTGGGGGAGGCTGCTCACAGCAAGACCCTCTCCCTTTACTTTTACCT----
----AAAGTTAGGAGCACTACAGATTTTTTTTCCCTTTAAAAGAAGACATGTTAAGGCAACGATTTTAAGTTAGGCCGGT
TGCTGCTGTGGTCGGCTCATCCGGGTGCCTCGTTCATTCCGTGTTATTTTCGAAACATCT--------------------
--------------------------------------ATTGAATGAATGGATTGAGGCATTTTCTTTTTCGTTGTTTTT
AATCACCCTTTATTAG----------------------------------------------------------------
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------------------------AAGAAAAAGGGCACAAGCGGCGCAATGGA-ACAGCAGAATCGTCTTCCACGATACT
------------------GAAGATCGAACCCAGTTCCGTCGTCCTGGATGGACGG----GCGCGTGGCAGC-------CG
CAAGATCTGCCGG-----CCCCCCACCCATGCGGACACAGATCAGGTGACATGCATCTTTGCATGTTACCGTGTGTGTGT
GTCTTGCGGCCCGAATTCAAATTTAAACATTGCAAAAAAATATAAAAAAATCATGCATGTTCACAGCACATATTAAGATA
ACCCCTCAAAAATTCAGATCAAAATTCGGAACATACATCGAGAAGCAAAAAAAAAGAAACTCAGATGTGAATAGTATTCA
GAGAATCATTCGCAACTATTCATGACATATTTCTCTTTTTTGCTTTTTGATGTATGTTTCGAATTTTGATCTAAATTTTT
AAGGGGTTATCTTAATATATGCTGTGAATATGCATGATTTTTTTCAGATTTTTTTGAAATGTTTAAATTTGAATTTAGAC
CGTAAGGCACACGGTGACATGCAAAGGTGCATGTAACCTTTTTTTAAAATTATAAGGTGCATGTGTCCCACCCATGCCCA
ACCCCTCTCGA---CCGA-----TGGTGGGAGTACTACTTCTGAAAGTCACGTCTGCCCTCTGCCCGCTGCTCTGCGCGG
TC-----CGCGGTGGGGTGGGT-GTGGTGCAGGGCGCAACAGGGGGAGGGAGGCACCGACGCGACGCAGC-------CGG
ACGGTGCCCGATTTCAACCGCCTCGATGCTTTCCA----------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------
----------S--------------------S--S-------------------S-------------------------
------------------------------------S-------S---------------S----S--------------
--------------------------------------S---S-------------------------------------
------S--------------------------S----------------------------------------------
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--------------------------------------------------------------------S-----------
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---------------------------------S----SS----------------------------------------
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-----------------------------S------------S-------------------------------------
----------------------------SSS---------S---------------------------------------
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----------------------------------S------------------S--SSS---------------------
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------------------S----SS-------------------------------------------------------
---------------------------S------S----------------S----------------------------
--------------------------SS-----------------------------------SS------S--------
-S-S--S-------------------------------------------------------------------------
---------------------------------SS-S-SSS---------------------------------------
-----------S----------------------------------------S-----------SSS-SSSSSS--S--S
SSSSSSS-SSSSSSSSSSSS--SSSSSSS-SSS---SS------------------S-S----S----------------
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----------------------------------S--------------------------------------S------
------------------------S-------------------------------------------------------
---------------------------------------------------S--SSSSS---------------------
-------------------------------S------------------------------------------------
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-----SSSSSSSSS-------------------------------------------------S----------------
--SSSSS-------------S-S-----------------------------------------------SSSSSS----
------S-----------S--S----------------SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_88
--------------------------------------------------------------------TGTCCGCAGTTT
GAGAGGTC------------------------------------------------------------------------
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>reverse_1994
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-------------------------------------------------------------------------AACCCCA
CATTCCATCGTCC-------------------------------------------------------------------
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