Multiple sequence alignment - TraesCS4D01G236800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G236800 chr4D 100.000 4014 0 0 1 4014 398902051 398906064 0.000000e+00 7413.0
1 TraesCS4D01G236800 chr4A 90.965 3088 166 52 390 3437 56259878 56262892 0.000000e+00 4052.0
2 TraesCS4D01G236800 chr4A 91.117 394 26 6 1 389 601331389 601331000 3.550000e-145 525.0
3 TraesCS4D01G236800 chr4A 88.889 396 23 5 3632 4006 56263162 56263557 6.070000e-128 468.0
4 TraesCS4D01G236800 chr4A 82.178 101 13 3 3632 3727 56263074 56263174 9.250000e-12 82.4
5 TraesCS4D01G236800 chr4B 91.670 2605 142 34 943 3523 491797057 491799610 0.000000e+00 3539.0
6 TraesCS4D01G236800 chr4B 85.075 536 23 20 388 887 491796445 491796959 1.000000e-135 494.0
7 TraesCS4D01G236800 chr4B 89.239 381 24 6 3631 4006 491799609 491799977 1.020000e-125 460.0
8 TraesCS4D01G236800 chr1A 92.621 393 22 4 1 389 33216697 33217086 3.500000e-155 558.0
9 TraesCS4D01G236800 chr1A 96.429 56 2 0 3577 3632 534537180 534537125 4.270000e-15 93.5
10 TraesCS4D01G236800 chr1A 94.737 57 3 0 3577 3633 538381728 538381784 5.530000e-14 89.8
11 TraesCS4D01G236800 chr1A 94.737 57 3 0 3577 3633 538388643 538388699 5.530000e-14 89.8
12 TraesCS4D01G236800 chr1D 91.272 401 29 5 1 399 317596313 317595917 3.530000e-150 542.0
13 TraesCS4D01G236800 chr1D 91.049 391 31 3 1 389 18049769 18050157 3.550000e-145 525.0
14 TraesCS4D01G236800 chr7A 91.282 390 31 2 1 389 652536978 652536591 2.750000e-146 529.0
15 TraesCS4D01G236800 chr7A 94.643 56 3 0 3577 3632 161841362 161841307 1.990000e-13 87.9
16 TraesCS4D01G236800 chr7A 96.226 53 2 0 3576 3628 513634289 513634237 1.990000e-13 87.9
17 TraesCS4D01G236800 chr3D 91.071 392 31 3 3 392 587941035 587940646 9.880000e-146 527.0
18 TraesCS4D01G236800 chr3D 91.228 57 5 0 3522 3578 256878960 256878904 1.200000e-10 78.7
19 TraesCS4D01G236800 chr7D 91.260 389 29 4 1 387 566318929 566318544 3.550000e-145 525.0
20 TraesCS4D01G236800 chr7D 91.228 57 5 0 3522 3578 229031292 229031348 1.200000e-10 78.7
21 TraesCS4D01G236800 chr6B 90.380 395 32 5 1 393 12489600 12489210 7.690000e-142 514.0
22 TraesCS4D01G236800 chr1B 90.355 394 31 6 2 392 370953908 370953519 9.950000e-141 510.0
23 TraesCS4D01G236800 chr1B 94.643 56 3 0 3577 3632 665101456 665101401 1.990000e-13 87.9
24 TraesCS4D01G236800 chr2B 87.063 286 28 6 3115 3398 493647933 493648211 8.370000e-82 315.0
25 TraesCS4D01G236800 chr2B 96.491 57 2 0 3577 3633 763458784 763458728 1.190000e-15 95.3
26 TraesCS4D01G236800 chr2B 91.228 57 5 0 3522 3578 5349259 5349203 1.200000e-10 78.7
27 TraesCS4D01G236800 chr2B 95.238 42 2 0 3537 3578 756061053 756061094 2.590000e-07 67.6
28 TraesCS4D01G236800 chr2B 92.857 42 3 0 3537 3578 394952970 394952929 1.200000e-05 62.1
29 TraesCS4D01G236800 chr5B 92.647 68 4 1 3577 3643 620651953 620652020 3.300000e-16 97.1
30 TraesCS4D01G236800 chr5A 96.429 56 2 0 3577 3632 551909252 551909307 4.270000e-15 93.5
31 TraesCS4D01G236800 chr3B 92.982 57 4 0 3522 3578 357909996 357910052 2.570000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G236800 chr4D 398902051 398906064 4013 False 7413.000000 7413 100.000000 1 4014 1 chr4D.!!$F1 4013
1 TraesCS4D01G236800 chr4A 56259878 56263557 3679 False 1534.133333 4052 87.344000 390 4006 3 chr4A.!!$F1 3616
2 TraesCS4D01G236800 chr4B 491796445 491799977 3532 False 1497.666667 3539 88.661333 388 4006 3 chr4B.!!$F1 3618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 379 0.034059 AGTGAGCTCGGTCACCAAAG 59.966 55.0 21.54 0.00 46.94 2.77 F
912 953 0.104304 CCACTGGTATAGGTGCCGAC 59.896 60.0 0.00 0.00 31.88 4.79 F
1421 1546 0.109153 AGTGACATGCAGCAGGTTCA 59.891 50.0 15.07 10.78 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1613 0.724453 CGACGAACGGCACAAAATGG 60.724 55.0 0.11 0.0 38.46 3.16 R
2852 2992 0.575859 CATCTCAGCACTGAATCGCG 59.424 55.0 0.00 0.0 39.39 5.87 R
3135 3277 0.105760 ATCAGAGAGACCATCGCCCT 60.106 55.0 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 8.792830 ATATGCATGTATGTAAGGATGTAACC 57.207 34.615 10.16 0.00 0.00 2.85
87 88 5.373222 TGCATGTATGTAAGGATGTAACCC 58.627 41.667 0.00 0.00 0.00 4.11
88 89 5.104318 TGCATGTATGTAAGGATGTAACCCA 60.104 40.000 0.00 0.00 0.00 4.51
89 90 5.238650 GCATGTATGTAAGGATGTAACCCAC 59.761 44.000 0.00 0.00 0.00 4.61
90 91 6.353323 CATGTATGTAAGGATGTAACCCACA 58.647 40.000 0.00 0.00 42.69 4.17
102 103 6.909550 ATGTAACCCACATGTGTGTAAAAT 57.090 33.333 23.79 10.24 46.41 1.82
103 104 6.716934 TGTAACCCACATGTGTGTAAAATT 57.283 33.333 23.79 6.47 44.21 1.82
104 105 7.113658 TGTAACCCACATGTGTGTAAAATTT 57.886 32.000 23.79 5.77 44.21 1.82
105 106 7.203910 TGTAACCCACATGTGTGTAAAATTTC 58.796 34.615 23.79 2.88 44.21 2.17
106 107 5.860941 ACCCACATGTGTGTAAAATTTCA 57.139 34.783 23.79 0.00 44.21 2.69
107 108 6.418057 ACCCACATGTGTGTAAAATTTCAT 57.582 33.333 23.79 0.00 44.21 2.57
108 109 6.222389 ACCCACATGTGTGTAAAATTTCATG 58.778 36.000 23.79 11.64 44.21 3.07
109 110 6.041409 ACCCACATGTGTGTAAAATTTCATGA 59.959 34.615 23.79 0.00 44.21 3.07
110 111 7.098477 CCCACATGTGTGTAAAATTTCATGAT 58.902 34.615 23.79 4.46 44.21 2.45
111 112 7.063662 CCCACATGTGTGTAAAATTTCATGATG 59.936 37.037 23.79 12.60 44.21 3.07
112 113 7.813627 CCACATGTGTGTAAAATTTCATGATGA 59.186 33.333 23.79 0.00 44.21 2.92
113 114 9.194271 CACATGTGTGTAAAATTTCATGATGAA 57.806 29.630 18.03 3.29 40.96 2.57
114 115 9.761504 ACATGTGTGTAAAATTTCATGATGAAA 57.238 25.926 21.39 21.39 42.56 2.69
128 129 9.654663 TTTCATGATGAAATACATTGAAATGCA 57.345 25.926 16.04 0.00 41.02 3.96
129 130 9.654663 TTCATGATGAAATACATTGAAATGCAA 57.345 25.926 5.21 0.00 39.56 4.08
130 131 9.089601 TCATGATGAAATACATTGAAATGCAAC 57.910 29.630 2.92 0.00 39.78 4.17
131 132 8.874816 CATGATGAAATACATTGAAATGCAACA 58.125 29.630 2.92 0.00 39.78 3.33
132 133 9.607988 ATGATGAAATACATTGAAATGCAACAT 57.392 25.926 2.92 1.57 39.78 2.71
133 134 8.874816 TGATGAAATACATTGAAATGCAACATG 58.125 29.630 2.92 0.00 39.78 3.21
134 135 8.780846 ATGAAATACATTGAAATGCAACATGT 57.219 26.923 2.92 0.00 39.78 3.21
135 136 9.872721 ATGAAATACATTGAAATGCAACATGTA 57.127 25.926 0.00 0.00 39.78 2.29
136 137 9.138062 TGAAATACATTGAAATGCAACATGTAC 57.862 29.630 0.00 0.00 39.78 2.90
137 138 9.138062 GAAATACATTGAAATGCAACATGTACA 57.862 29.630 0.00 0.00 39.78 2.90
138 139 9.486497 AAATACATTGAAATGCAACATGTACAA 57.514 25.926 0.00 0.00 39.78 2.41
139 140 9.486497 AATACATTGAAATGCAACATGTACAAA 57.514 25.926 0.00 0.00 39.78 2.83
140 141 7.783090 ACATTGAAATGCAACATGTACAAAA 57.217 28.000 0.00 0.00 39.78 2.44
141 142 8.206325 ACATTGAAATGCAACATGTACAAAAA 57.794 26.923 0.00 0.00 39.78 1.94
161 162 5.473066 AAAAGACAAATTCATGGTCTGGG 57.527 39.130 2.80 0.00 40.80 4.45
162 163 4.387026 AAGACAAATTCATGGTCTGGGA 57.613 40.909 2.80 0.00 40.80 4.37
163 164 3.960571 AGACAAATTCATGGTCTGGGAG 58.039 45.455 1.32 0.00 40.21 4.30
164 165 3.019564 GACAAATTCATGGTCTGGGAGG 58.980 50.000 0.00 0.00 0.00 4.30
165 166 2.649312 ACAAATTCATGGTCTGGGAGGA 59.351 45.455 0.00 0.00 0.00 3.71
166 167 3.270433 ACAAATTCATGGTCTGGGAGGAT 59.730 43.478 0.00 0.00 0.00 3.24
167 168 3.589951 AATTCATGGTCTGGGAGGATG 57.410 47.619 0.00 0.00 0.00 3.51
168 169 2.268796 TTCATGGTCTGGGAGGATGA 57.731 50.000 0.00 0.00 0.00 2.92
169 170 2.268796 TCATGGTCTGGGAGGATGAA 57.731 50.000 0.00 0.00 0.00 2.57
170 171 2.780414 TCATGGTCTGGGAGGATGAAT 58.220 47.619 0.00 0.00 0.00 2.57
171 172 3.940335 TCATGGTCTGGGAGGATGAATA 58.060 45.455 0.00 0.00 0.00 1.75
172 173 3.906218 TCATGGTCTGGGAGGATGAATAG 59.094 47.826 0.00 0.00 0.00 1.73
173 174 3.421394 TGGTCTGGGAGGATGAATAGT 57.579 47.619 0.00 0.00 0.00 2.12
174 175 4.552883 TGGTCTGGGAGGATGAATAGTA 57.447 45.455 0.00 0.00 0.00 1.82
175 176 5.093236 TGGTCTGGGAGGATGAATAGTAT 57.907 43.478 0.00 0.00 0.00 2.12
176 177 5.087323 TGGTCTGGGAGGATGAATAGTATC 58.913 45.833 0.00 0.00 0.00 2.24
177 178 5.087323 GGTCTGGGAGGATGAATAGTATCA 58.913 45.833 0.00 0.00 0.00 2.15
178 179 5.723887 GGTCTGGGAGGATGAATAGTATCAT 59.276 44.000 0.00 0.00 42.62 2.45
179 180 6.351711 GGTCTGGGAGGATGAATAGTATCATG 60.352 46.154 0.00 0.00 40.08 3.07
180 181 6.212388 GTCTGGGAGGATGAATAGTATCATGT 59.788 42.308 0.00 0.00 40.08 3.21
181 182 6.212187 TCTGGGAGGATGAATAGTATCATGTG 59.788 42.308 0.00 0.00 40.08 3.21
182 183 5.846164 TGGGAGGATGAATAGTATCATGTGT 59.154 40.000 0.00 0.00 40.08 3.72
183 184 6.329986 TGGGAGGATGAATAGTATCATGTGTT 59.670 38.462 0.00 0.00 40.08 3.32
184 185 7.512402 TGGGAGGATGAATAGTATCATGTGTTA 59.488 37.037 0.00 0.00 40.08 2.41
185 186 8.375506 GGGAGGATGAATAGTATCATGTGTTAA 58.624 37.037 0.00 0.00 40.08 2.01
186 187 9.778741 GGAGGATGAATAGTATCATGTGTTAAA 57.221 33.333 0.00 0.00 40.08 1.52
192 193 8.952278 TGAATAGTATCATGTGTTAAACAACCC 58.048 33.333 0.00 0.00 43.61 4.11
193 194 7.875327 ATAGTATCATGTGTTAAACAACCCC 57.125 36.000 0.00 0.00 43.61 4.95
194 195 5.636123 AGTATCATGTGTTAAACAACCCCA 58.364 37.500 0.00 0.00 43.61 4.96
195 196 5.710099 AGTATCATGTGTTAAACAACCCCAG 59.290 40.000 0.00 0.00 43.61 4.45
196 197 4.171878 TCATGTGTTAAACAACCCCAGA 57.828 40.909 0.00 0.00 43.61 3.86
197 198 4.735369 TCATGTGTTAAACAACCCCAGAT 58.265 39.130 0.00 0.00 43.61 2.90
198 199 5.144100 TCATGTGTTAAACAACCCCAGATT 58.856 37.500 0.00 0.00 43.61 2.40
199 200 5.600484 TCATGTGTTAAACAACCCCAGATTT 59.400 36.000 0.00 0.00 43.61 2.17
200 201 5.269505 TGTGTTAAACAACCCCAGATTTG 57.730 39.130 0.00 0.00 35.24 2.32
201 202 4.712337 TGTGTTAAACAACCCCAGATTTGT 59.288 37.500 0.00 0.00 37.55 2.83
202 203 5.163499 TGTGTTAAACAACCCCAGATTTGTC 60.163 40.000 0.00 0.00 34.82 3.18
203 204 5.068591 GTGTTAAACAACCCCAGATTTGTCT 59.931 40.000 0.00 0.00 34.82 3.41
204 205 5.659079 TGTTAAACAACCCCAGATTTGTCTT 59.341 36.000 0.00 0.00 34.82 3.01
205 206 6.155393 TGTTAAACAACCCCAGATTTGTCTTT 59.845 34.615 0.00 0.00 34.82 2.52
206 207 5.692115 AAACAACCCCAGATTTGTCTTTT 57.308 34.783 0.00 0.00 34.82 2.27
207 208 5.692115 AACAACCCCAGATTTGTCTTTTT 57.308 34.783 0.00 0.00 34.82 1.94
224 225 2.818130 TTTTGCACAGCCCTCATTTC 57.182 45.000 0.00 0.00 0.00 2.17
225 226 1.702182 TTTGCACAGCCCTCATTTCA 58.298 45.000 0.00 0.00 0.00 2.69
226 227 1.702182 TTGCACAGCCCTCATTTCAA 58.298 45.000 0.00 0.00 0.00 2.69
227 228 0.961019 TGCACAGCCCTCATTTCAAC 59.039 50.000 0.00 0.00 0.00 3.18
228 229 0.961019 GCACAGCCCTCATTTCAACA 59.039 50.000 0.00 0.00 0.00 3.33
229 230 1.547372 GCACAGCCCTCATTTCAACAT 59.453 47.619 0.00 0.00 0.00 2.71
230 231 2.673043 GCACAGCCCTCATTTCAACATG 60.673 50.000 0.00 0.00 0.00 3.21
231 232 2.559668 CACAGCCCTCATTTCAACATGT 59.440 45.455 0.00 0.00 0.00 3.21
232 233 3.006110 CACAGCCCTCATTTCAACATGTT 59.994 43.478 4.92 4.92 0.00 2.71
233 234 3.642848 ACAGCCCTCATTTCAACATGTTT 59.357 39.130 8.77 0.00 0.00 2.83
234 235 3.991773 CAGCCCTCATTTCAACATGTTTG 59.008 43.478 8.77 4.94 0.00 2.93
235 236 2.738314 GCCCTCATTTCAACATGTTTGC 59.262 45.455 8.77 0.00 0.00 3.68
236 237 3.328505 CCCTCATTTCAACATGTTTGCC 58.671 45.455 8.77 0.00 0.00 4.52
237 238 3.328505 CCTCATTTCAACATGTTTGCCC 58.671 45.455 8.77 0.00 0.00 5.36
238 239 3.007182 CCTCATTTCAACATGTTTGCCCT 59.993 43.478 8.77 0.00 0.00 5.19
239 240 3.991773 CTCATTTCAACATGTTTGCCCTG 59.008 43.478 8.77 3.70 0.00 4.45
240 241 3.640498 TCATTTCAACATGTTTGCCCTGA 59.360 39.130 8.77 6.00 0.00 3.86
241 242 4.100653 TCATTTCAACATGTTTGCCCTGAA 59.899 37.500 8.77 6.32 0.00 3.02
242 243 4.478206 TTTCAACATGTTTGCCCTGAAA 57.522 36.364 8.77 12.21 31.80 2.69
243 244 4.478206 TTCAACATGTTTGCCCTGAAAA 57.522 36.364 8.77 0.00 0.00 2.29
244 245 4.686191 TCAACATGTTTGCCCTGAAAAT 57.314 36.364 8.77 0.00 0.00 1.82
245 246 5.033589 TCAACATGTTTGCCCTGAAAATT 57.966 34.783 8.77 0.00 0.00 1.82
246 247 5.435291 TCAACATGTTTGCCCTGAAAATTT 58.565 33.333 8.77 0.00 0.00 1.82
247 248 6.586344 TCAACATGTTTGCCCTGAAAATTTA 58.414 32.000 8.77 0.00 0.00 1.40
248 249 6.481644 TCAACATGTTTGCCCTGAAAATTTAC 59.518 34.615 8.77 0.00 0.00 2.01
249 250 5.923204 ACATGTTTGCCCTGAAAATTTACA 58.077 33.333 0.00 0.00 0.00 2.41
250 251 5.757808 ACATGTTTGCCCTGAAAATTTACAC 59.242 36.000 0.00 0.00 0.00 2.90
251 252 5.344743 TGTTTGCCCTGAAAATTTACACA 57.655 34.783 0.00 0.00 0.00 3.72
252 253 5.112686 TGTTTGCCCTGAAAATTTACACAC 58.887 37.500 0.00 0.00 0.00 3.82
253 254 5.112686 GTTTGCCCTGAAAATTTACACACA 58.887 37.500 0.00 0.00 0.00 3.72
254 255 5.543507 TTGCCCTGAAAATTTACACACAT 57.456 34.783 0.00 0.00 0.00 3.21
255 256 4.880759 TGCCCTGAAAATTTACACACATG 58.119 39.130 0.00 0.00 0.00 3.21
256 257 4.343526 TGCCCTGAAAATTTACACACATGT 59.656 37.500 0.00 0.00 43.30 3.21
271 272 4.707030 CACATGTGTGTTATGCCTTCAT 57.293 40.909 18.03 0.00 40.96 2.57
272 273 4.417506 CACATGTGTGTTATGCCTTCATG 58.582 43.478 18.03 0.00 40.96 3.07
273 274 4.081406 ACATGTGTGTTATGCCTTCATGT 58.919 39.130 0.00 0.00 39.25 3.21
274 275 5.123661 CACATGTGTGTTATGCCTTCATGTA 59.876 40.000 18.03 0.00 41.14 2.29
275 276 5.887598 ACATGTGTGTTATGCCTTCATGTAT 59.112 36.000 0.00 0.00 41.23 2.29
276 277 7.012232 CACATGTGTGTTATGCCTTCATGTATA 59.988 37.037 18.03 0.00 41.14 1.47
277 278 6.918892 TGTGTGTTATGCCTTCATGTATAC 57.081 37.500 0.00 0.00 34.22 1.47
278 279 5.820423 TGTGTGTTATGCCTTCATGTATACC 59.180 40.000 0.00 0.00 34.22 2.73
279 280 5.820423 GTGTGTTATGCCTTCATGTATACCA 59.180 40.000 0.00 0.00 34.22 3.25
280 281 6.017934 GTGTGTTATGCCTTCATGTATACCAG 60.018 42.308 0.00 0.00 34.22 4.00
281 282 6.055588 GTGTTATGCCTTCATGTATACCAGT 58.944 40.000 0.00 0.00 34.22 4.00
282 283 7.147637 TGTGTTATGCCTTCATGTATACCAGTA 60.148 37.037 0.00 0.00 34.22 2.74
283 284 7.713507 GTGTTATGCCTTCATGTATACCAGTAA 59.286 37.037 0.00 0.00 34.22 2.24
284 285 8.268605 TGTTATGCCTTCATGTATACCAGTAAA 58.731 33.333 0.00 0.00 34.22 2.01
285 286 9.116067 GTTATGCCTTCATGTATACCAGTAAAA 57.884 33.333 0.00 0.00 34.22 1.52
286 287 9.688091 TTATGCCTTCATGTATACCAGTAAAAA 57.312 29.630 0.00 0.00 34.22 1.94
354 355 9.165035 TGAAATTTGAATTTTGAATATGGAGGC 57.835 29.630 0.00 0.00 38.64 4.70
355 356 8.510243 AAATTTGAATTTTGAATATGGAGGCC 57.490 30.769 0.00 0.00 35.16 5.19
356 357 6.872585 TTTGAATTTTGAATATGGAGGCCT 57.127 33.333 3.86 3.86 0.00 5.19
357 358 6.469782 TTGAATTTTGAATATGGAGGCCTC 57.530 37.500 25.59 25.59 0.00 4.70
367 368 2.899505 GAGGCCTCCAGTGAGCTC 59.100 66.667 23.19 6.82 37.29 4.09
368 369 3.073735 AGGCCTCCAGTGAGCTCG 61.074 66.667 9.64 0.00 37.29 5.03
369 370 4.154347 GGCCTCCAGTGAGCTCGG 62.154 72.222 9.64 4.39 37.29 4.63
370 371 3.386237 GCCTCCAGTGAGCTCGGT 61.386 66.667 9.64 0.00 37.29 4.69
371 372 2.888863 CCTCCAGTGAGCTCGGTC 59.111 66.667 9.64 2.22 37.29 4.79
372 373 1.979155 CCTCCAGTGAGCTCGGTCA 60.979 63.158 9.64 0.00 37.29 4.02
373 374 1.214062 CTCCAGTGAGCTCGGTCAC 59.786 63.158 18.61 18.61 46.22 3.67
374 375 2.219325 CTCCAGTGAGCTCGGTCACC 62.219 65.000 21.54 7.76 46.94 4.02
375 376 2.574018 CCAGTGAGCTCGGTCACCA 61.574 63.158 21.54 0.00 46.94 4.17
376 377 1.367471 CAGTGAGCTCGGTCACCAA 59.633 57.895 21.54 0.00 46.94 3.67
377 378 0.249868 CAGTGAGCTCGGTCACCAAA 60.250 55.000 21.54 0.00 46.94 3.28
378 379 0.034059 AGTGAGCTCGGTCACCAAAG 59.966 55.000 21.54 0.00 46.94 2.77
379 380 0.951040 GTGAGCTCGGTCACCAAAGG 60.951 60.000 16.18 0.00 40.96 3.11
380 381 2.032681 AGCTCGGTCACCAAAGGC 59.967 61.111 0.00 0.00 0.00 4.35
381 382 2.281484 GCTCGGTCACCAAAGGCA 60.281 61.111 0.00 0.00 0.00 4.75
382 383 1.896660 GCTCGGTCACCAAAGGCAA 60.897 57.895 0.00 0.00 0.00 4.52
383 384 1.244019 GCTCGGTCACCAAAGGCAAT 61.244 55.000 0.00 0.00 0.00 3.56
384 385 1.247567 CTCGGTCACCAAAGGCAATT 58.752 50.000 0.00 0.00 0.00 2.32
385 386 1.613437 CTCGGTCACCAAAGGCAATTT 59.387 47.619 0.00 0.00 0.00 1.82
386 387 1.611491 TCGGTCACCAAAGGCAATTTC 59.389 47.619 0.00 0.00 0.00 2.17
592 607 0.713883 CCGTCGATGGTTTTGTCTCG 59.286 55.000 15.98 0.00 0.00 4.04
814 853 7.164230 CTTCTATAAGGGTAGGATACAGCAG 57.836 44.000 0.00 0.00 45.43 4.24
887 928 3.972403 ACGAACACTTGCCATTTTAACC 58.028 40.909 0.00 0.00 0.00 2.85
893 934 2.037121 ACTTGCCATTTTAACCCACTGC 59.963 45.455 0.00 0.00 0.00 4.40
894 935 0.972883 TGCCATTTTAACCCACTGCC 59.027 50.000 0.00 0.00 0.00 4.85
895 936 0.972883 GCCATTTTAACCCACTGCCA 59.027 50.000 0.00 0.00 0.00 4.92
896 937 1.337728 GCCATTTTAACCCACTGCCAC 60.338 52.381 0.00 0.00 0.00 5.01
897 938 2.247358 CCATTTTAACCCACTGCCACT 58.753 47.619 0.00 0.00 0.00 4.00
898 939 2.029110 CCATTTTAACCCACTGCCACTG 60.029 50.000 0.00 0.00 0.00 3.66
899 940 1.698506 TTTTAACCCACTGCCACTGG 58.301 50.000 0.00 0.00 0.00 4.00
900 941 0.553819 TTTAACCCACTGCCACTGGT 59.446 50.000 0.00 0.00 0.00 4.00
901 942 1.436326 TTAACCCACTGCCACTGGTA 58.564 50.000 0.00 0.00 0.00 3.25
902 943 1.663911 TAACCCACTGCCACTGGTAT 58.336 50.000 0.00 0.00 0.00 2.73
903 944 1.663911 AACCCACTGCCACTGGTATA 58.336 50.000 0.00 0.00 0.00 1.47
904 945 1.204146 ACCCACTGCCACTGGTATAG 58.796 55.000 0.00 0.00 0.00 1.31
905 946 0.469917 CCCACTGCCACTGGTATAGG 59.530 60.000 0.00 0.00 0.00 2.57
906 947 1.204146 CCACTGCCACTGGTATAGGT 58.796 55.000 0.00 0.00 0.00 3.08
907 948 1.134401 CCACTGCCACTGGTATAGGTG 60.134 57.143 0.00 0.00 0.00 4.00
908 949 0.541863 ACTGCCACTGGTATAGGTGC 59.458 55.000 0.00 0.00 32.68 5.01
909 950 0.179045 CTGCCACTGGTATAGGTGCC 60.179 60.000 0.00 0.00 32.68 5.01
910 951 1.227556 GCCACTGGTATAGGTGCCG 60.228 63.158 0.00 0.00 31.88 5.69
911 952 1.682451 GCCACTGGTATAGGTGCCGA 61.682 60.000 0.00 0.00 31.88 5.54
912 953 0.104304 CCACTGGTATAGGTGCCGAC 59.896 60.000 0.00 0.00 31.88 4.79
930 997 3.653009 GTGCTGTGCTCGCTTGCA 61.653 61.111 0.00 0.00 41.05 4.08
961 1070 2.872245 TCTCTTGAACAACTTTGGCGAG 59.128 45.455 0.00 0.00 0.00 5.03
967 1076 1.298859 ACAACTTTGGCGAGCGATCC 61.299 55.000 0.00 0.00 0.00 3.36
1231 1356 6.210784 TCCCGTCTACTAAGATTTATCCATGG 59.789 42.308 4.97 4.97 33.30 3.66
1262 1387 4.227134 CCGTCCCGCCTCCATGAG 62.227 72.222 0.00 0.00 0.00 2.90
1415 1540 3.955775 CGTGAGTGACATGCAGCA 58.044 55.556 0.00 0.00 0.00 4.41
1416 1541 1.785951 CGTGAGTGACATGCAGCAG 59.214 57.895 0.00 0.00 0.00 4.24
1417 1542 1.632948 CGTGAGTGACATGCAGCAGG 61.633 60.000 5.26 5.26 0.00 4.85
1418 1543 0.604780 GTGAGTGACATGCAGCAGGT 60.605 55.000 13.67 13.67 0.00 4.00
1421 1546 0.109153 AGTGACATGCAGCAGGTTCA 59.891 50.000 15.07 10.78 0.00 3.18
1422 1547 1.171308 GTGACATGCAGCAGGTTCAT 58.829 50.000 15.07 0.00 0.00 2.57
1423 1548 1.131883 GTGACATGCAGCAGGTTCATC 59.868 52.381 15.07 1.68 0.00 2.92
1424 1549 0.376152 GACATGCAGCAGGTTCATCG 59.624 55.000 15.07 0.00 0.00 3.84
1425 1550 0.321919 ACATGCAGCAGGTTCATCGT 60.322 50.000 6.94 0.00 0.00 3.73
1426 1551 1.066215 ACATGCAGCAGGTTCATCGTA 60.066 47.619 6.94 0.00 0.00 3.43
1427 1552 2.009051 CATGCAGCAGGTTCATCGTAA 58.991 47.619 0.00 0.00 0.00 3.18
1428 1553 2.177394 TGCAGCAGGTTCATCGTAAA 57.823 45.000 0.00 0.00 0.00 2.01
1431 1556 4.257731 TGCAGCAGGTTCATCGTAAATTA 58.742 39.130 0.00 0.00 0.00 1.40
1441 1566 6.245724 GTTCATCGTAAATTACTTTCCGTGG 58.754 40.000 1.42 0.00 0.00 4.94
1458 1583 2.660900 CGTGGTTGGTTTCGATTCGTTC 60.661 50.000 5.89 0.00 0.00 3.95
1503 1632 0.724453 CCATTTTGTGCCGTTCGTCG 60.724 55.000 0.00 0.00 39.52 5.12
1517 1646 2.148916 TCGTCGCACTCAAACTCAAT 57.851 45.000 0.00 0.00 0.00 2.57
1526 1655 2.035066 ACTCAAACTCAATGCTTGTGCC 59.965 45.455 0.00 0.00 38.71 5.01
1568 1697 2.934570 CGGTTTGGCTTGGCTGCAT 61.935 57.895 0.50 0.00 34.04 3.96
1569 1698 1.375013 GGTTTGGCTTGGCTGCATG 60.375 57.895 0.50 0.00 34.04 4.06
1570 1699 2.030958 GTTTGGCTTGGCTGCATGC 61.031 57.895 11.82 11.82 41.94 4.06
1571 1700 2.508751 TTTGGCTTGGCTGCATGCA 61.509 52.632 21.29 21.29 45.15 3.96
1661 1790 1.079474 ATGTACGTCATGCGGTGCA 60.079 52.632 12.85 10.72 46.52 4.57
1926 2055 2.029964 GACCGTCCTCGCCAACAA 59.970 61.111 0.00 0.00 35.54 2.83
1943 2079 3.584868 AAGCGCTGGGTACGTGGTC 62.585 63.158 12.58 0.00 0.00 4.02
1945 2081 2.126071 CGCTGGGTACGTGGTCAG 60.126 66.667 0.00 3.87 0.00 3.51
1959 2095 2.083774 TGGTCAGCATCGATTTGTTCC 58.916 47.619 0.00 6.06 0.00 3.62
2031 2167 4.947147 TCCGCACTGCAACCACCC 62.947 66.667 1.11 0.00 0.00 4.61
2034 2170 2.985847 GCACTGCAACCACCCCTC 60.986 66.667 0.00 0.00 0.00 4.30
2057 2193 0.180642 TACGTTGGTTTCAGGTGCCA 59.819 50.000 0.00 0.00 0.00 4.92
2292 2428 2.032185 CTACGCGCCGGTGAAAATCC 62.032 60.000 21.76 0.00 0.00 3.01
2305 2441 4.142534 GGTGAAAATCCTTTAGCCGGTAAC 60.143 45.833 1.90 0.00 0.00 2.50
2345 2482 2.367241 TCCAGAAAATGTGACTGACCGA 59.633 45.455 0.00 0.00 34.07 4.69
2348 2485 1.459592 GAAAATGTGACTGACCGACCG 59.540 52.381 0.00 0.00 0.00 4.79
2565 2702 3.040763 GCATCATCGAGCTCGCCC 61.041 66.667 30.97 10.89 39.60 6.13
2595 2732 1.335142 GCTACCAGGTCGATCGATCAC 60.335 57.143 28.86 18.08 0.00 3.06
2597 2734 1.025812 ACCAGGTCGATCGATCACTC 58.974 55.000 28.86 12.29 0.00 3.51
2612 2750 4.135153 CTCCACTCCACTCCGCCG 62.135 72.222 0.00 0.00 0.00 6.46
2623 2761 2.758327 TCCGCCGCTACTGTCCAT 60.758 61.111 0.00 0.00 0.00 3.41
2812 2952 3.786635 AGGTAAGTCGATCTCATGCAAC 58.213 45.455 0.00 0.00 0.00 4.17
2820 2960 0.807667 ATCTCATGCAACTCGTCCGC 60.808 55.000 0.00 0.00 0.00 5.54
2852 2992 4.171754 GCAAAAAGATCCAAGATGTCTGC 58.828 43.478 0.00 0.00 0.00 4.26
2853 2993 4.409570 CAAAAAGATCCAAGATGTCTGCG 58.590 43.478 0.00 0.00 0.00 5.18
2917 3057 0.962356 GGTACGAGTTCAGGACCGGA 60.962 60.000 9.46 0.00 0.00 5.14
2920 3060 0.538977 ACGAGTTCAGGACCGGAGAA 60.539 55.000 9.46 3.68 0.00 2.87
3099 3241 9.884465 GTCTTGCCAATGTGAATAATAATAGTC 57.116 33.333 0.00 0.00 0.00 2.59
3135 3277 3.407967 GGATGTCTCGGCCCCCAA 61.408 66.667 0.00 0.00 0.00 4.12
3162 3304 2.382882 TGGTCTCTCTGATGCTACTGG 58.617 52.381 0.00 0.00 0.00 4.00
3197 3339 2.426522 TGGAAAGAGAGAAATGCACGG 58.573 47.619 0.00 0.00 0.00 4.94
3266 3408 5.146010 ACTAAAGAGGAAGCTTCTCTGTG 57.854 43.478 25.05 17.96 41.01 3.66
3267 3409 3.415457 AAAGAGGAAGCTTCTCTGTGG 57.585 47.619 25.05 0.00 41.01 4.17
3268 3410 2.022718 AGAGGAAGCTTCTCTGTGGT 57.977 50.000 25.05 2.64 39.83 4.16
3269 3411 1.622811 AGAGGAAGCTTCTCTGTGGTG 59.377 52.381 25.05 0.00 39.83 4.17
3281 3423 2.359975 GTGGTGTGGTGCCTAGCC 60.360 66.667 0.00 0.00 0.00 3.93
3313 3455 8.709386 AAATTTTTGTGTAATATTATGCCGCA 57.291 26.923 0.00 0.00 0.00 5.69
3338 3480 1.436983 GAGGCTTGTAATTCGGCCCG 61.437 60.000 0.00 0.00 45.07 6.13
3339 3481 1.450669 GGCTTGTAATTCGGCCCGA 60.451 57.895 0.00 0.00 38.77 5.14
3398 3543 3.198853 TGGTAAGCCTTTTGCCTTGTTTT 59.801 39.130 0.00 0.00 42.71 2.43
3399 3544 4.196193 GGTAAGCCTTTTGCCTTGTTTTT 58.804 39.130 0.00 0.00 42.71 1.94
3401 3546 5.995282 GGTAAGCCTTTTGCCTTGTTTTTAT 59.005 36.000 0.00 0.00 42.71 1.40
3402 3547 6.485313 GGTAAGCCTTTTGCCTTGTTTTTATT 59.515 34.615 0.00 0.00 42.71 1.40
3403 3548 7.012894 GGTAAGCCTTTTGCCTTGTTTTTATTT 59.987 33.333 0.00 0.00 42.71 1.40
3404 3549 7.403312 AAGCCTTTTGCCTTGTTTTTATTTT 57.597 28.000 0.00 0.00 42.71 1.82
3441 3586 9.904647 GATATCTCGTGTTAGAAGATACGTATC 57.095 37.037 25.00 25.00 37.74 2.24
3442 3587 6.536731 TCTCGTGTTAGAAGATACGTATCC 57.463 41.667 27.78 15.90 37.74 2.59
3445 3590 5.237996 TCGTGTTAGAAGATACGTATCCCAG 59.762 44.000 27.78 11.87 37.74 4.45
3454 3780 0.456221 ACGTATCCCAGTCTTCAGCG 59.544 55.000 0.00 0.00 0.00 5.18
3467 3793 4.816385 AGTCTTCAGCGAGTTCAAATTTGA 59.184 37.500 16.91 16.91 34.92 2.69
3507 3836 4.350368 TGTTGATCCTGCTTGACACTTA 57.650 40.909 0.00 0.00 0.00 2.24
3510 3839 2.560981 TGATCCTGCTTGACACTTACGA 59.439 45.455 0.00 0.00 0.00 3.43
3523 3852 6.375377 TGACACTTACGAATTTGCCAAATAC 58.625 36.000 2.54 0.00 0.00 1.89
3524 3853 6.205853 TGACACTTACGAATTTGCCAAATACT 59.794 34.615 2.54 0.00 0.00 2.12
3527 3856 5.944007 ACTTACGAATTTGCCAAATACTCCT 59.056 36.000 2.54 0.00 0.00 3.69
3528 3857 6.433093 ACTTACGAATTTGCCAAATACTCCTT 59.567 34.615 2.54 0.00 0.00 3.36
3529 3858 5.722021 ACGAATTTGCCAAATACTCCTTT 57.278 34.783 2.54 0.00 0.00 3.11
3530 3859 5.709966 ACGAATTTGCCAAATACTCCTTTC 58.290 37.500 2.54 0.00 0.00 2.62
3531 3860 4.793216 CGAATTTGCCAAATACTCCTTTCG 59.207 41.667 2.54 4.44 0.00 3.46
3532 3861 5.619086 CGAATTTGCCAAATACTCCTTTCGT 60.619 40.000 2.54 0.00 0.00 3.85
3533 3862 5.722021 ATTTGCCAAATACTCCTTTCGTT 57.278 34.783 0.00 0.00 0.00 3.85
3534 3863 4.759516 TTGCCAAATACTCCTTTCGTTC 57.240 40.909 0.00 0.00 0.00 3.95
3535 3864 4.015872 TGCCAAATACTCCTTTCGTTCT 57.984 40.909 0.00 0.00 0.00 3.01
3536 3865 4.394729 TGCCAAATACTCCTTTCGTTCTT 58.605 39.130 0.00 0.00 0.00 2.52
3537 3866 5.553123 TGCCAAATACTCCTTTCGTTCTTA 58.447 37.500 0.00 0.00 0.00 2.10
3538 3867 5.998981 TGCCAAATACTCCTTTCGTTCTTAA 59.001 36.000 0.00 0.00 0.00 1.85
3539 3868 6.487331 TGCCAAATACTCCTTTCGTTCTTAAA 59.513 34.615 0.00 0.00 0.00 1.52
3540 3869 7.175990 TGCCAAATACTCCTTTCGTTCTTAAAT 59.824 33.333 0.00 0.00 0.00 1.40
3541 3870 8.671028 GCCAAATACTCCTTTCGTTCTTAAATA 58.329 33.333 0.00 0.00 0.00 1.40
3573 3902 9.305925 CATTTTAGAGATTTTAAATGGACTGCC 57.694 33.333 0.00 0.00 35.42 4.85
3588 3917 2.771089 ACTGCCACATGTAGTCACTTG 58.229 47.619 0.00 0.00 34.48 3.16
3589 3918 2.104792 ACTGCCACATGTAGTCACTTGT 59.895 45.455 0.00 0.00 42.15 3.16
3590 3919 3.141398 CTGCCACATGTAGTCACTTGTT 58.859 45.455 0.00 0.00 40.13 2.83
3591 3920 2.877786 TGCCACATGTAGTCACTTGTTG 59.122 45.455 0.00 0.00 40.13 3.33
3592 3921 3.138304 GCCACATGTAGTCACTTGTTGA 58.862 45.455 0.00 0.00 40.13 3.18
3593 3922 3.563808 GCCACATGTAGTCACTTGTTGAA 59.436 43.478 0.00 0.00 40.13 2.69
3594 3923 4.036262 GCCACATGTAGTCACTTGTTGAAA 59.964 41.667 0.00 0.00 40.13 2.69
3595 3924 5.278463 GCCACATGTAGTCACTTGTTGAAAT 60.278 40.000 0.00 0.00 40.13 2.17
3596 3925 6.373779 CCACATGTAGTCACTTGTTGAAATC 58.626 40.000 0.00 0.00 40.13 2.17
3597 3926 6.205464 CCACATGTAGTCACTTGTTGAAATCT 59.795 38.462 0.00 0.00 40.13 2.40
3598 3927 7.255242 CCACATGTAGTCACTTGTTGAAATCTT 60.255 37.037 0.00 0.00 40.13 2.40
3599 3928 7.800380 CACATGTAGTCACTTGTTGAAATCTTC 59.200 37.037 0.00 0.00 40.13 2.87
3600 3929 7.498900 ACATGTAGTCACTTGTTGAAATCTTCA 59.501 33.333 0.00 0.00 39.34 3.02
3601 3930 7.482654 TGTAGTCACTTGTTGAAATCTTCAG 57.517 36.000 0.00 0.00 41.38 3.02
3602 3931 7.272244 TGTAGTCACTTGTTGAAATCTTCAGA 58.728 34.615 0.00 0.00 41.38 3.27
3603 3932 7.768582 TGTAGTCACTTGTTGAAATCTTCAGAA 59.231 33.333 0.00 0.00 41.38 3.02
3604 3933 7.630242 AGTCACTTGTTGAAATCTTCAGAAA 57.370 32.000 0.00 0.00 41.38 2.52
3605 3934 7.701445 AGTCACTTGTTGAAATCTTCAGAAAG 58.299 34.615 9.71 9.71 41.38 2.62
3606 3935 7.554118 AGTCACTTGTTGAAATCTTCAGAAAGA 59.446 33.333 14.85 0.00 39.95 2.52
3607 3936 7.641802 GTCACTTGTTGAAATCTTCAGAAAGAC 59.358 37.037 14.85 8.51 39.09 3.01
3608 3937 7.336679 TCACTTGTTGAAATCTTCAGAAAGACA 59.663 33.333 14.85 4.36 44.13 3.41
3609 3938 7.970061 CACTTGTTGAAATCTTCAGAAAGACAA 59.030 33.333 14.85 9.92 44.13 3.18
3610 3939 8.522830 ACTTGTTGAAATCTTCAGAAAGACAAA 58.477 29.630 14.85 0.35 44.13 2.83
3611 3940 9.525409 CTTGTTGAAATCTTCAGAAAGACAAAT 57.475 29.630 7.07 0.00 44.13 2.32
3622 3951 8.948853 TTCAGAAAGACAAATATTTAGCAACG 57.051 30.769 0.00 0.00 0.00 4.10
3623 3952 7.526608 TCAGAAAGACAAATATTTAGCAACGG 58.473 34.615 0.00 0.00 0.00 4.44
3624 3953 7.389330 TCAGAAAGACAAATATTTAGCAACGGA 59.611 33.333 0.00 0.00 0.00 4.69
3625 3954 7.693951 CAGAAAGACAAATATTTAGCAACGGAG 59.306 37.037 0.00 0.00 0.00 4.63
3626 3955 7.606456 AGAAAGACAAATATTTAGCAACGGAGA 59.394 33.333 0.00 0.00 0.00 3.71
3627 3956 6.910536 AGACAAATATTTAGCAACGGAGAG 57.089 37.500 0.00 0.00 0.00 3.20
3628 3957 6.640518 AGACAAATATTTAGCAACGGAGAGA 58.359 36.000 0.00 0.00 0.00 3.10
3629 3958 6.758886 AGACAAATATTTAGCAACGGAGAGAG 59.241 38.462 0.00 0.00 0.00 3.20
3630 3959 6.407202 ACAAATATTTAGCAACGGAGAGAGT 58.593 36.000 0.00 0.00 0.00 3.24
3631 3960 7.553334 ACAAATATTTAGCAACGGAGAGAGTA 58.447 34.615 0.00 0.00 0.00 2.59
3632 3961 7.707035 ACAAATATTTAGCAACGGAGAGAGTAG 59.293 37.037 0.00 0.00 0.00 2.57
3633 3962 7.584122 AATATTTAGCAACGGAGAGAGTAGA 57.416 36.000 0.00 0.00 0.00 2.59
3634 3963 7.768807 ATATTTAGCAACGGAGAGAGTAGAT 57.231 36.000 0.00 0.00 0.00 1.98
3635 3964 5.502153 TTTAGCAACGGAGAGAGTAGATC 57.498 43.478 0.00 0.00 0.00 2.75
3636 3965 2.303175 AGCAACGGAGAGAGTAGATCC 58.697 52.381 0.00 0.00 0.00 3.36
3679 4008 0.446616 GGGCACGCAAAGTAGCTAAC 59.553 55.000 0.00 0.00 0.00 2.34
3691 4020 4.373348 AGTAGCTAACGTTGATCCTGAC 57.627 45.455 11.99 0.00 0.00 3.51
3699 4028 1.000843 CGTTGATCCTGACTGACACCA 59.999 52.381 0.00 0.00 0.00 4.17
3753 4082 2.125552 CCTGGCAGTCGCATCGAA 60.126 61.111 14.43 0.00 41.24 3.71
3774 4103 6.861572 TCGAAGTTACAGTTACAGAGACATTG 59.138 38.462 0.00 0.00 0.00 2.82
3781 4110 4.331992 CAGTTACAGAGACATTGCATGGAG 59.668 45.833 0.00 0.00 33.60 3.86
3783 4112 2.983229 ACAGAGACATTGCATGGAGAC 58.017 47.619 0.00 0.00 33.60 3.36
3792 4121 4.202295 ACATTGCATGGAGACTCGATGTAT 60.202 41.667 23.42 16.07 35.41 2.29
3796 4125 4.811024 TGCATGGAGACTCGATGTATTTTC 59.189 41.667 23.42 10.20 35.41 2.29
3865 4200 3.056179 CCAACAAGTGTGGTTTTTCTGGT 60.056 43.478 0.00 0.00 0.00 4.00
3871 4210 1.754621 TGGTTTTTCTGGTGGCGCA 60.755 52.632 10.83 0.00 0.00 6.09
4006 4356 0.187117 TTGCCAATCCAGACCCAACA 59.813 50.000 0.00 0.00 0.00 3.33
4007 4357 0.187117 TGCCAATCCAGACCCAACAA 59.813 50.000 0.00 0.00 0.00 2.83
4008 4358 0.890683 GCCAATCCAGACCCAACAAG 59.109 55.000 0.00 0.00 0.00 3.16
4009 4359 0.890683 CCAATCCAGACCCAACAAGC 59.109 55.000 0.00 0.00 0.00 4.01
4010 4360 1.619654 CAATCCAGACCCAACAAGCA 58.380 50.000 0.00 0.00 0.00 3.91
4011 4361 1.270550 CAATCCAGACCCAACAAGCAC 59.729 52.381 0.00 0.00 0.00 4.40
4012 4362 0.606401 ATCCAGACCCAACAAGCACG 60.606 55.000 0.00 0.00 0.00 5.34
4013 4363 1.525995 CCAGACCCAACAAGCACGT 60.526 57.895 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.231297 GGTTACATCCTTACATACATGCATATT 57.769 33.333 0.00 0.00 0.00 1.28
61 62 7.829211 GGGTTACATCCTTACATACATGCATAT 59.171 37.037 0.00 0.00 0.00 1.78
62 63 7.165485 GGGTTACATCCTTACATACATGCATA 58.835 38.462 0.00 0.00 0.00 3.14
63 64 6.003950 GGGTTACATCCTTACATACATGCAT 58.996 40.000 0.00 0.00 0.00 3.96
64 65 5.104318 TGGGTTACATCCTTACATACATGCA 60.104 40.000 0.00 0.00 0.00 3.96
65 66 5.238650 GTGGGTTACATCCTTACATACATGC 59.761 44.000 0.00 0.00 0.00 4.06
66 67 6.353323 TGTGGGTTACATCCTTACATACATG 58.647 40.000 0.00 0.00 33.42 3.21
67 68 6.569127 TGTGGGTTACATCCTTACATACAT 57.431 37.500 0.00 0.00 33.42 2.29
71 72 9.598320 ACACACATGTGGGTTACATCCTTACAT 62.598 40.741 28.06 0.00 46.70 2.29
72 73 8.383022 ACACACATGTGGGTTACATCCTTACA 62.383 42.308 28.06 0.00 46.70 2.41
73 74 6.033707 ACACACATGTGGGTTACATCCTTAC 61.034 44.000 28.06 0.00 46.70 2.34
74 75 4.042311 ACACACATGTGGGTTACATCCTTA 59.958 41.667 28.06 0.00 46.70 2.69
75 76 3.181434 ACACACATGTGGGTTACATCCTT 60.181 43.478 28.06 1.71 46.70 3.36
76 77 2.375174 ACACACATGTGGGTTACATCCT 59.625 45.455 28.06 2.52 46.70 3.24
77 78 2.790433 ACACACATGTGGGTTACATCC 58.210 47.619 28.06 0.00 46.70 3.51
78 79 5.950758 TTTACACACATGTGGGTTACATC 57.049 39.130 36.81 0.00 46.70 3.06
79 80 6.909550 ATTTTACACACATGTGGGTTACAT 57.090 33.333 36.81 23.70 46.70 2.29
80 81 6.716934 AATTTTACACACATGTGGGTTACA 57.283 33.333 36.81 22.52 46.70 2.41
81 82 7.203910 TGAAATTTTACACACATGTGGGTTAC 58.796 34.615 36.81 16.85 46.70 2.50
82 83 7.348080 TGAAATTTTACACACATGTGGGTTA 57.652 32.000 36.81 26.47 46.70 2.85
83 84 6.227298 TGAAATTTTACACACATGTGGGTT 57.773 33.333 36.81 19.39 46.70 4.11
87 88 9.194271 TTCATCATGAAATTTTACACACATGTG 57.806 29.630 24.25 24.25 41.50 3.21
88 89 9.761504 TTTCATCATGAAATTTTACACACATGT 57.238 25.926 8.85 0.00 41.02 3.21
102 103 9.654663 TGCATTTCAATGTATTTCATCATGAAA 57.345 25.926 15.23 15.23 42.38 2.69
103 104 9.654663 TTGCATTTCAATGTATTTCATCATGAA 57.345 25.926 0.00 0.00 38.65 2.57
104 105 9.089601 GTTGCATTTCAATGTATTTCATCATGA 57.910 29.630 0.00 0.00 38.65 3.07
105 106 8.874816 TGTTGCATTTCAATGTATTTCATCATG 58.125 29.630 1.59 0.00 38.65 3.07
106 107 9.607988 ATGTTGCATTTCAATGTATTTCATCAT 57.392 25.926 1.59 0.14 38.65 2.45
107 108 8.874816 CATGTTGCATTTCAATGTATTTCATCA 58.125 29.630 1.59 0.00 38.65 3.07
108 109 8.875803 ACATGTTGCATTTCAATGTATTTCATC 58.124 29.630 0.00 0.00 38.65 2.92
109 110 8.780846 ACATGTTGCATTTCAATGTATTTCAT 57.219 26.923 0.00 1.25 38.65 2.57
110 111 9.138062 GTACATGTTGCATTTCAATGTATTTCA 57.862 29.630 2.30 0.00 34.52 2.69
111 112 9.138062 TGTACATGTTGCATTTCAATGTATTTC 57.862 29.630 2.30 1.69 34.52 2.17
112 113 9.486497 TTGTACATGTTGCATTTCAATGTATTT 57.514 25.926 2.30 0.00 34.52 1.40
113 114 9.486497 TTTGTACATGTTGCATTTCAATGTATT 57.514 25.926 2.30 0.00 34.52 1.89
114 115 9.486497 TTTTGTACATGTTGCATTTCAATGTAT 57.514 25.926 2.30 0.00 34.52 2.29
115 116 8.877808 TTTTGTACATGTTGCATTTCAATGTA 57.122 26.923 2.30 0.00 38.65 2.29
116 117 7.783090 TTTTGTACATGTTGCATTTCAATGT 57.217 28.000 2.30 0.00 38.65 2.71
138 139 5.602145 TCCCAGACCATGAATTTGTCTTTTT 59.398 36.000 0.00 0.00 37.25 1.94
139 140 5.147032 TCCCAGACCATGAATTTGTCTTTT 58.853 37.500 0.00 0.00 37.25 2.27
140 141 4.739793 TCCCAGACCATGAATTTGTCTTT 58.260 39.130 0.00 0.00 37.25 2.52
141 142 4.338879 CTCCCAGACCATGAATTTGTCTT 58.661 43.478 0.00 0.00 37.25 3.01
142 143 3.308688 CCTCCCAGACCATGAATTTGTCT 60.309 47.826 0.00 0.00 39.86 3.41
143 144 3.019564 CCTCCCAGACCATGAATTTGTC 58.980 50.000 0.00 0.00 0.00 3.18
144 145 2.649312 TCCTCCCAGACCATGAATTTGT 59.351 45.455 0.00 0.00 0.00 2.83
145 146 3.370840 TCCTCCCAGACCATGAATTTG 57.629 47.619 0.00 0.00 0.00 2.32
146 147 3.528905 TCATCCTCCCAGACCATGAATTT 59.471 43.478 0.00 0.00 0.00 1.82
147 148 3.125656 TCATCCTCCCAGACCATGAATT 58.874 45.455 0.00 0.00 0.00 2.17
148 149 2.780414 TCATCCTCCCAGACCATGAAT 58.220 47.619 0.00 0.00 0.00 2.57
149 150 2.268796 TCATCCTCCCAGACCATGAA 57.731 50.000 0.00 0.00 0.00 2.57
150 151 2.268796 TTCATCCTCCCAGACCATGA 57.731 50.000 0.00 0.00 0.00 3.07
151 152 3.649981 ACTATTCATCCTCCCAGACCATG 59.350 47.826 0.00 0.00 0.00 3.66
152 153 3.946824 ACTATTCATCCTCCCAGACCAT 58.053 45.455 0.00 0.00 0.00 3.55
153 154 3.421394 ACTATTCATCCTCCCAGACCA 57.579 47.619 0.00 0.00 0.00 4.02
154 155 5.087323 TGATACTATTCATCCTCCCAGACC 58.913 45.833 0.00 0.00 0.00 3.85
155 156 6.212388 ACATGATACTATTCATCCTCCCAGAC 59.788 42.308 0.00 0.00 34.09 3.51
156 157 6.212187 CACATGATACTATTCATCCTCCCAGA 59.788 42.308 0.00 0.00 34.09 3.86
157 158 6.013898 ACACATGATACTATTCATCCTCCCAG 60.014 42.308 0.00 0.00 34.09 4.45
158 159 5.846164 ACACATGATACTATTCATCCTCCCA 59.154 40.000 0.00 0.00 34.09 4.37
159 160 6.365970 ACACATGATACTATTCATCCTCCC 57.634 41.667 0.00 0.00 34.09 4.30
160 161 9.778741 TTTAACACATGATACTATTCATCCTCC 57.221 33.333 0.00 0.00 34.09 4.30
166 167 8.952278 GGGTTGTTTAACACATGATACTATTCA 58.048 33.333 0.00 0.00 40.03 2.57
167 168 8.403236 GGGGTTGTTTAACACATGATACTATTC 58.597 37.037 0.00 0.00 42.12 1.75
168 169 7.891183 TGGGGTTGTTTAACACATGATACTATT 59.109 33.333 0.00 0.00 42.12 1.73
169 170 7.406916 TGGGGTTGTTTAACACATGATACTAT 58.593 34.615 0.00 0.00 42.12 2.12
170 171 6.780901 TGGGGTTGTTTAACACATGATACTA 58.219 36.000 0.00 0.00 42.12 1.82
171 172 5.636123 TGGGGTTGTTTAACACATGATACT 58.364 37.500 0.00 0.00 42.12 2.12
172 173 5.708230 TCTGGGGTTGTTTAACACATGATAC 59.292 40.000 0.00 0.00 42.12 2.24
173 174 5.882040 TCTGGGGTTGTTTAACACATGATA 58.118 37.500 0.00 0.00 42.12 2.15
174 175 4.735369 TCTGGGGTTGTTTAACACATGAT 58.265 39.130 0.00 0.00 42.12 2.45
175 176 4.171878 TCTGGGGTTGTTTAACACATGA 57.828 40.909 0.00 0.00 42.12 3.07
176 177 5.467035 AATCTGGGGTTGTTTAACACATG 57.533 39.130 0.00 0.00 42.12 3.21
177 178 5.365314 ACAAATCTGGGGTTGTTTAACACAT 59.635 36.000 0.00 0.00 42.12 3.21
178 179 4.712337 ACAAATCTGGGGTTGTTTAACACA 59.288 37.500 0.00 0.00 42.12 3.72
179 180 5.068591 AGACAAATCTGGGGTTGTTTAACAC 59.931 40.000 0.00 0.00 38.07 3.32
180 181 5.205056 AGACAAATCTGGGGTTGTTTAACA 58.795 37.500 0.00 0.00 38.07 2.41
181 182 5.784578 AGACAAATCTGGGGTTGTTTAAC 57.215 39.130 0.00 0.00 38.07 2.01
182 183 6.800072 AAAGACAAATCTGGGGTTGTTTAA 57.200 33.333 0.00 0.00 38.07 1.52
183 184 6.800072 AAAAGACAAATCTGGGGTTGTTTA 57.200 33.333 0.00 0.00 38.07 2.01
184 185 5.692115 AAAAGACAAATCTGGGGTTGTTT 57.308 34.783 0.00 0.00 38.07 2.83
185 186 5.692115 AAAAAGACAAATCTGGGGTTGTT 57.308 34.783 0.00 0.00 38.07 2.83
204 205 2.433604 TGAAATGAGGGCTGTGCAAAAA 59.566 40.909 0.00 0.00 0.00 1.94
205 206 2.037901 TGAAATGAGGGCTGTGCAAAA 58.962 42.857 0.00 0.00 0.00 2.44
206 207 1.702182 TGAAATGAGGGCTGTGCAAA 58.298 45.000 0.00 0.00 0.00 3.68
207 208 1.340889 GTTGAAATGAGGGCTGTGCAA 59.659 47.619 0.00 0.00 0.00 4.08
208 209 0.961019 GTTGAAATGAGGGCTGTGCA 59.039 50.000 0.00 0.00 0.00 4.57
209 210 0.961019 TGTTGAAATGAGGGCTGTGC 59.039 50.000 0.00 0.00 0.00 4.57
210 211 2.559668 ACATGTTGAAATGAGGGCTGTG 59.440 45.455 0.00 0.00 0.00 3.66
211 212 2.880443 ACATGTTGAAATGAGGGCTGT 58.120 42.857 0.00 0.00 0.00 4.40
212 213 3.947910 AACATGTTGAAATGAGGGCTG 57.052 42.857 11.07 0.00 0.00 4.85
213 214 3.555586 GCAAACATGTTGAAATGAGGGCT 60.556 43.478 12.82 0.00 0.00 5.19
214 215 2.738314 GCAAACATGTTGAAATGAGGGC 59.262 45.455 12.82 1.86 0.00 5.19
215 216 3.328505 GGCAAACATGTTGAAATGAGGG 58.671 45.455 12.82 0.00 0.00 4.30
216 217 3.007182 AGGGCAAACATGTTGAAATGAGG 59.993 43.478 12.82 0.00 0.00 3.86
217 218 3.991773 CAGGGCAAACATGTTGAAATGAG 59.008 43.478 12.82 0.00 0.00 2.90
218 219 3.640498 TCAGGGCAAACATGTTGAAATGA 59.360 39.130 12.82 10.25 31.56 2.57
219 220 3.992643 TCAGGGCAAACATGTTGAAATG 58.007 40.909 12.82 7.75 31.56 2.32
220 221 4.686191 TTCAGGGCAAACATGTTGAAAT 57.314 36.364 12.82 0.00 31.56 2.17
221 222 4.478206 TTTCAGGGCAAACATGTTGAAA 57.522 36.364 12.82 13.70 33.58 2.69
222 223 4.478206 TTTTCAGGGCAAACATGTTGAA 57.522 36.364 12.82 8.06 31.56 2.69
223 224 4.686191 ATTTTCAGGGCAAACATGTTGA 57.314 36.364 12.82 1.23 31.56 3.18
224 225 5.754543 AAATTTTCAGGGCAAACATGTTG 57.245 34.783 12.82 7.69 31.56 3.33
225 226 6.259829 GTGTAAATTTTCAGGGCAAACATGTT 59.740 34.615 4.92 4.92 31.56 2.71
226 227 5.757808 GTGTAAATTTTCAGGGCAAACATGT 59.242 36.000 0.00 0.00 31.56 3.21
227 228 5.757320 TGTGTAAATTTTCAGGGCAAACATG 59.243 36.000 0.00 0.00 0.00 3.21
228 229 5.757808 GTGTGTAAATTTTCAGGGCAAACAT 59.242 36.000 0.00 0.00 0.00 2.71
229 230 5.112686 GTGTGTAAATTTTCAGGGCAAACA 58.887 37.500 0.00 0.00 0.00 2.83
230 231 5.112686 TGTGTGTAAATTTTCAGGGCAAAC 58.887 37.500 0.00 0.00 0.00 2.93
231 232 5.344743 TGTGTGTAAATTTTCAGGGCAAA 57.655 34.783 0.00 0.00 0.00 3.68
232 233 5.163364 ACATGTGTGTAAATTTTCAGGGCAA 60.163 36.000 0.00 0.00 36.63 4.52
233 234 4.343526 ACATGTGTGTAAATTTTCAGGGCA 59.656 37.500 0.00 0.00 36.63 5.36
234 235 4.685628 CACATGTGTGTAAATTTTCAGGGC 59.314 41.667 18.03 0.00 40.96 5.19
248 249 6.126914 CATGAAGGCATAACACACATGTGTG 61.127 44.000 43.01 43.01 44.88 3.82
249 250 4.082625 CATGAAGGCATAACACACATGTGT 60.083 41.667 25.76 25.76 46.35 3.72
250 251 4.082625 ACATGAAGGCATAACACACATGTG 60.083 41.667 24.25 24.25 42.90 3.21
251 252 4.081406 ACATGAAGGCATAACACACATGT 58.919 39.130 0.00 0.00 40.84 3.21
252 253 4.707030 ACATGAAGGCATAACACACATG 57.293 40.909 0.00 0.00 39.27 3.21
253 254 6.486657 GGTATACATGAAGGCATAACACACAT 59.513 38.462 5.01 0.00 32.27 3.21
254 255 5.820423 GGTATACATGAAGGCATAACACACA 59.180 40.000 5.01 0.00 32.27 3.72
255 256 5.820423 TGGTATACATGAAGGCATAACACAC 59.180 40.000 5.01 0.00 32.27 3.82
256 257 5.995446 TGGTATACATGAAGGCATAACACA 58.005 37.500 5.01 0.00 32.27 3.72
257 258 6.055588 ACTGGTATACATGAAGGCATAACAC 58.944 40.000 5.01 0.00 32.27 3.32
258 259 6.247229 ACTGGTATACATGAAGGCATAACA 57.753 37.500 5.01 0.00 32.27 2.41
259 260 8.671384 TTTACTGGTATACATGAAGGCATAAC 57.329 34.615 5.01 0.00 32.27 1.89
260 261 9.688091 TTTTTACTGGTATACATGAAGGCATAA 57.312 29.630 5.01 0.00 32.27 1.90
328 329 9.165035 GCCTCCATATTCAAAATTCAAATTTCA 57.835 29.630 1.43 0.00 37.62 2.69
329 330 8.615211 GGCCTCCATATTCAAAATTCAAATTTC 58.385 33.333 0.00 0.00 37.62 2.17
330 331 8.330993 AGGCCTCCATATTCAAAATTCAAATTT 58.669 29.630 0.00 0.00 40.15 1.82
331 332 7.864770 AGGCCTCCATATTCAAAATTCAAATT 58.135 30.769 0.00 0.00 0.00 1.82
332 333 7.441903 AGGCCTCCATATTCAAAATTCAAAT 57.558 32.000 0.00 0.00 0.00 2.32
333 334 6.872585 AGGCCTCCATATTCAAAATTCAAA 57.127 33.333 0.00 0.00 0.00 2.69
334 335 6.469782 GAGGCCTCCATATTCAAAATTCAA 57.530 37.500 23.19 0.00 0.00 2.69
350 351 2.899505 GAGCTCACTGGAGGCCTC 59.100 66.667 25.59 25.59 41.67 4.70
351 352 3.073735 CGAGCTCACTGGAGGCCT 61.074 66.667 15.40 3.86 41.67 5.19
352 353 4.154347 CCGAGCTCACTGGAGGCC 62.154 72.222 15.40 0.00 41.67 5.19
353 354 3.363844 GACCGAGCTCACTGGAGGC 62.364 68.421 15.40 0.00 41.67 4.70
354 355 1.979155 TGACCGAGCTCACTGGAGG 60.979 63.158 15.40 8.04 41.67 4.30
355 356 1.214062 GTGACCGAGCTCACTGGAG 59.786 63.158 15.40 0.00 44.33 3.86
356 357 2.276116 GGTGACCGAGCTCACTGGA 61.276 63.158 15.40 0.00 40.50 3.86
357 358 2.099652 TTGGTGACCGAGCTCACTGG 62.100 60.000 15.40 9.60 40.50 4.00
358 359 0.249868 TTTGGTGACCGAGCTCACTG 60.250 55.000 15.40 3.86 40.50 3.66
359 360 0.034059 CTTTGGTGACCGAGCTCACT 59.966 55.000 15.40 0.00 40.50 3.41
360 361 0.951040 CCTTTGGTGACCGAGCTCAC 60.951 60.000 15.40 4.81 40.02 3.51
361 362 1.371183 CCTTTGGTGACCGAGCTCA 59.629 57.895 15.40 0.00 0.00 4.26
362 363 2.035442 GCCTTTGGTGACCGAGCTC 61.035 63.158 2.73 2.73 0.00 4.09
363 364 2.032681 GCCTTTGGTGACCGAGCT 59.967 61.111 0.00 0.00 0.00 4.09
364 365 1.244019 ATTGCCTTTGGTGACCGAGC 61.244 55.000 0.00 0.00 0.00 5.03
365 366 1.247567 AATTGCCTTTGGTGACCGAG 58.752 50.000 0.00 0.00 0.00 4.63
366 367 1.611491 GAAATTGCCTTTGGTGACCGA 59.389 47.619 0.00 0.00 0.00 4.69
367 368 1.336795 GGAAATTGCCTTTGGTGACCG 60.337 52.381 0.00 0.00 0.00 4.79
368 369 1.336795 CGGAAATTGCCTTTGGTGACC 60.337 52.381 0.00 0.00 0.00 4.02
369 370 1.339929 ACGGAAATTGCCTTTGGTGAC 59.660 47.619 0.00 0.00 0.00 3.67
370 371 1.698506 ACGGAAATTGCCTTTGGTGA 58.301 45.000 0.00 0.00 0.00 4.02
371 372 3.866883 ATACGGAAATTGCCTTTGGTG 57.133 42.857 0.00 0.00 0.00 4.17
372 373 4.850680 TCTATACGGAAATTGCCTTTGGT 58.149 39.130 0.00 0.00 0.00 3.67
373 374 6.208644 CAATCTATACGGAAATTGCCTTTGG 58.791 40.000 0.00 0.00 0.00 3.28
374 375 6.039270 TCCAATCTATACGGAAATTGCCTTTG 59.961 38.462 0.00 0.00 0.00 2.77
375 376 6.126409 TCCAATCTATACGGAAATTGCCTTT 58.874 36.000 0.00 0.00 0.00 3.11
376 377 5.690865 TCCAATCTATACGGAAATTGCCTT 58.309 37.500 0.00 0.00 0.00 4.35
377 378 5.304686 TCCAATCTATACGGAAATTGCCT 57.695 39.130 0.00 0.00 0.00 4.75
378 379 5.531287 ACTTCCAATCTATACGGAAATTGCC 59.469 40.000 0.00 0.00 38.32 4.52
379 380 6.619801 ACTTCCAATCTATACGGAAATTGC 57.380 37.500 0.00 0.00 38.32 3.56
380 381 9.855021 AAAAACTTCCAATCTATACGGAAATTG 57.145 29.630 0.00 0.00 38.32 2.32
771 797 1.826720 AGGCCACATGCATTGGTTTAG 59.173 47.619 21.41 3.69 43.89 1.85
814 853 3.107017 GCAAGTGTTCGATTTGCCC 57.893 52.632 11.23 0.00 40.89 5.36
887 928 1.134401 CACCTATACCAGTGGCAGTGG 60.134 57.143 34.38 34.38 44.34 4.00
893 934 0.104304 GTCGGCACCTATACCAGTGG 59.896 60.000 7.91 7.91 34.48 4.00
894 935 0.248907 CGTCGGCACCTATACCAGTG 60.249 60.000 0.00 0.00 37.05 3.66
895 936 0.682209 ACGTCGGCACCTATACCAGT 60.682 55.000 0.00 0.00 0.00 4.00
896 937 0.248907 CACGTCGGCACCTATACCAG 60.249 60.000 0.00 0.00 0.00 4.00
897 938 1.811195 CACGTCGGCACCTATACCA 59.189 57.895 0.00 0.00 0.00 3.25
898 939 1.590792 GCACGTCGGCACCTATACC 60.591 63.158 0.00 0.00 0.00 2.73
899 940 0.870307 CAGCACGTCGGCACCTATAC 60.870 60.000 8.15 0.00 35.83 1.47
900 941 1.317431 ACAGCACGTCGGCACCTATA 61.317 55.000 8.15 0.00 35.83 1.31
901 942 2.184322 CAGCACGTCGGCACCTAT 59.816 61.111 8.15 0.00 35.83 2.57
902 943 3.299977 ACAGCACGTCGGCACCTA 61.300 61.111 8.15 0.00 35.83 3.08
903 944 4.969196 CACAGCACGTCGGCACCT 62.969 66.667 8.15 0.00 35.83 4.00
910 951 3.038417 AAGCGAGCACAGCACGTC 61.038 61.111 10.21 3.59 43.77 4.34
911 952 3.341043 CAAGCGAGCACAGCACGT 61.341 61.111 10.21 0.00 43.77 4.49
912 953 4.731503 GCAAGCGAGCACAGCACG 62.732 66.667 4.51 4.51 44.60 5.34
930 997 4.646492 AGTTGTTCAAGAGAGCAATGGTTT 59.354 37.500 0.00 0.00 44.90 3.27
1004 1113 3.961197 TCGCAGACGACAGCACGT 61.961 61.111 3.07 3.54 45.12 4.49
1231 1356 4.148825 ACGGGAGAGCATCGTGGC 62.149 66.667 0.00 0.00 42.67 5.01
1258 1383 3.504375 TCATCGTCATCCTCATCCTCAT 58.496 45.455 0.00 0.00 0.00 2.90
1259 1384 2.889678 CTCATCGTCATCCTCATCCTCA 59.110 50.000 0.00 0.00 0.00 3.86
1260 1385 2.230992 CCTCATCGTCATCCTCATCCTC 59.769 54.545 0.00 0.00 0.00 3.71
1261 1386 2.246469 CCTCATCGTCATCCTCATCCT 58.754 52.381 0.00 0.00 0.00 3.24
1262 1387 1.967066 ACCTCATCGTCATCCTCATCC 59.033 52.381 0.00 0.00 0.00 3.51
1263 1388 2.351253 CGACCTCATCGTCATCCTCATC 60.351 54.545 0.00 0.00 46.25 2.92
1414 1539 6.091713 ACGGAAAGTAATTTACGATGAACCTG 59.908 38.462 25.58 0.40 0.00 4.00
1415 1540 6.091713 CACGGAAAGTAATTTACGATGAACCT 59.908 38.462 25.58 0.00 0.00 3.50
1416 1541 6.245724 CACGGAAAGTAATTTACGATGAACC 58.754 40.000 25.58 1.77 0.00 3.62
1417 1542 6.128472 ACCACGGAAAGTAATTTACGATGAAC 60.128 38.462 25.58 0.00 0.00 3.18
1418 1543 5.933463 ACCACGGAAAGTAATTTACGATGAA 59.067 36.000 25.58 0.00 0.00 2.57
1421 1546 5.122711 CCAACCACGGAAAGTAATTTACGAT 59.877 40.000 25.58 8.21 0.00 3.73
1422 1547 4.451774 CCAACCACGGAAAGTAATTTACGA 59.548 41.667 25.58 0.00 0.00 3.43
1423 1548 4.213906 ACCAACCACGGAAAGTAATTTACG 59.786 41.667 18.08 18.08 0.00 3.18
1424 1549 5.694231 ACCAACCACGGAAAGTAATTTAC 57.306 39.130 0.00 0.00 0.00 2.01
1425 1550 6.513066 CGAAACCAACCACGGAAAGTAATTTA 60.513 38.462 0.00 0.00 0.00 1.40
1426 1551 5.593968 GAAACCAACCACGGAAAGTAATTT 58.406 37.500 0.00 0.00 0.00 1.82
1427 1552 4.261280 CGAAACCAACCACGGAAAGTAATT 60.261 41.667 0.00 0.00 0.00 1.40
1428 1553 3.251487 CGAAACCAACCACGGAAAGTAAT 59.749 43.478 0.00 0.00 0.00 1.89
1431 1556 1.018910 CGAAACCAACCACGGAAAGT 58.981 50.000 0.00 0.00 0.00 2.66
1458 1583 1.011904 CATTGGCGATCGAACTGCG 60.012 57.895 21.57 0.00 42.69 5.18
1484 1613 0.724453 CGACGAACGGCACAAAATGG 60.724 55.000 0.11 0.00 38.46 3.16
1492 1621 3.776659 TTGAGTGCGACGAACGGCA 62.777 57.895 0.00 0.00 42.83 5.69
1568 1697 3.062466 CTCCTCGTCGGACCTGCA 61.062 66.667 1.91 0.00 36.69 4.41
1569 1698 3.827898 CCTCCTCGTCGGACCTGC 61.828 72.222 1.91 0.00 36.69 4.85
1570 1699 3.141488 CCCTCCTCGTCGGACCTG 61.141 72.222 1.91 0.00 36.69 4.00
1627 1756 1.318158 ACATGTAGTCGGTCGGGGTC 61.318 60.000 0.00 0.00 0.00 4.46
1926 2055 4.065281 GACCACGTACCCAGCGCT 62.065 66.667 2.64 2.64 0.00 5.92
1943 2079 6.470235 GTGAATAAAGGAACAAATCGATGCTG 59.530 38.462 0.00 2.11 0.00 4.41
1945 2081 5.452302 CGTGAATAAAGGAACAAATCGATGC 59.548 40.000 0.00 0.00 0.00 3.91
2012 2148 3.357079 GTGGTTGCAGTGCGGAGG 61.357 66.667 11.20 0.00 0.00 4.30
2031 2167 0.940519 TGAAACCAACGTACGCGAGG 60.941 55.000 15.93 16.71 42.00 4.63
2034 2170 1.216941 ACCTGAAACCAACGTACGCG 61.217 55.000 16.72 3.53 44.93 6.01
2057 2193 2.034221 GCTCCCTTTCCTTGCGGT 59.966 61.111 0.00 0.00 0.00 5.68
2063 2199 1.597461 GTACAGCGCTCCCTTTCCT 59.403 57.895 7.13 0.00 0.00 3.36
2292 2428 5.235516 TGAAGAAGAAGTTACCGGCTAAAG 58.764 41.667 0.00 0.00 0.00 1.85
2305 2441 6.000219 TCTGGAAATTCACCTGAAGAAGAAG 59.000 40.000 0.00 0.00 37.48 2.85
2345 2482 2.290450 ACGATGGGATAAAAACACCGGT 60.290 45.455 0.00 0.00 0.00 5.28
2348 2485 3.377172 CCTGACGATGGGATAAAAACACC 59.623 47.826 0.00 0.00 0.00 4.16
2565 2702 2.103143 CTGGTAGCCGCTGTCTCG 59.897 66.667 2.16 0.00 0.00 4.04
2595 2732 4.135153 CGGCGGAGTGGAGTGGAG 62.135 72.222 0.00 0.00 0.00 3.86
2612 2750 1.279271 AGTTGGGTGATGGACAGTAGC 59.721 52.381 0.00 0.00 0.00 3.58
2623 2761 1.302431 CATCGGCACAGTTGGGTGA 60.302 57.895 0.00 0.00 41.32 4.02
2820 2960 0.967380 ATCTTTTTGCCCCGGCTCAG 60.967 55.000 7.35 0.00 42.51 3.35
2852 2992 0.575859 CATCTCAGCACTGAATCGCG 59.424 55.000 0.00 0.00 39.39 5.87
2853 2993 1.326852 CACATCTCAGCACTGAATCGC 59.673 52.381 1.42 0.00 39.39 4.58
2917 3057 0.952280 TCTTCGACAGCGTGTCTTCT 59.048 50.000 13.65 0.00 44.85 2.85
2920 3060 0.664767 GCTTCTTCGACAGCGTGTCT 60.665 55.000 13.65 0.00 44.85 3.41
3099 3241 2.833943 TCCCCGAGATATCATCACCATG 59.166 50.000 5.32 0.00 0.00 3.66
3133 3275 0.179089 CAGAGAGACCATCGCCCTTG 60.179 60.000 0.00 0.00 0.00 3.61
3135 3277 0.105760 ATCAGAGAGACCATCGCCCT 60.106 55.000 0.00 0.00 0.00 5.19
3146 3288 4.734398 AGAAACCAGTAGCATCAGAGAG 57.266 45.455 0.00 0.00 0.00 3.20
3162 3304 9.014297 TCTCTCTTTCCATATTTTCCAAGAAAC 57.986 33.333 0.00 0.00 0.00 2.78
3197 3339 2.309326 TGCGTTGTTACGGAACACC 58.691 52.632 14.13 5.08 45.36 4.16
3220 3362 1.956477 AGCAACAAGAACACCCATGAC 59.044 47.619 0.00 0.00 0.00 3.06
3221 3363 2.229792 GAGCAACAAGAACACCCATGA 58.770 47.619 0.00 0.00 0.00 3.07
3222 3364 1.069022 CGAGCAACAAGAACACCCATG 60.069 52.381 0.00 0.00 0.00 3.66
3223 3365 1.202758 TCGAGCAACAAGAACACCCAT 60.203 47.619 0.00 0.00 0.00 4.00
3266 3408 4.778143 CCGGCTAGGCACCACACC 62.778 72.222 17.45 0.00 0.00 4.16
3267 3409 4.778143 CCCGGCTAGGCACCACAC 62.778 72.222 17.45 0.00 39.21 3.82
3281 3423 9.810545 ATAATATTACACAAAAATTTCACCCCG 57.189 29.630 0.00 0.00 0.00 5.73
3313 3455 3.600388 CCGAATTACAAGCCTCACTCTT 58.400 45.455 0.00 0.00 0.00 2.85
3441 3586 0.318441 TGAACTCGCTGAAGACTGGG 59.682 55.000 0.00 0.00 0.00 4.45
3442 3587 2.154854 TTGAACTCGCTGAAGACTGG 57.845 50.000 0.00 0.00 0.00 4.00
3445 3590 5.095691 TCAAATTTGAACTCGCTGAAGAC 57.904 39.130 18.45 0.00 33.55 3.01
3454 3780 3.896648 TCCGTGCTCAAATTTGAACTC 57.103 42.857 20.82 15.82 36.64 3.01
3480 3806 1.134907 CAAGCAGGATCAACATTGGCC 60.135 52.381 0.00 0.00 0.00 5.36
3483 3812 3.504906 AGTGTCAAGCAGGATCAACATTG 59.495 43.478 0.00 0.00 0.00 2.82
3507 3836 5.619086 CGAAAGGAGTATTTGGCAAATTCGT 60.619 40.000 28.56 19.25 32.38 3.85
3510 3839 5.722021 ACGAAAGGAGTATTTGGCAAATT 57.278 34.783 28.56 13.46 32.38 1.82
3547 3876 9.305925 GGCAGTCCATTTAAAATCTCTAAAATG 57.694 33.333 0.00 0.00 38.47 2.32
3548 3877 9.034800 TGGCAGTCCATTTAAAATCTCTAAAAT 57.965 29.630 0.00 0.00 37.47 1.82
3549 3878 8.303876 GTGGCAGTCCATTTAAAATCTCTAAAA 58.696 33.333 0.00 0.00 45.62 1.52
3550 3879 7.450014 TGTGGCAGTCCATTTAAAATCTCTAAA 59.550 33.333 0.00 0.00 45.62 1.85
3551 3880 6.945435 TGTGGCAGTCCATTTAAAATCTCTAA 59.055 34.615 0.00 0.00 45.62 2.10
3552 3881 6.480763 TGTGGCAGTCCATTTAAAATCTCTA 58.519 36.000 0.00 0.00 45.62 2.43
3553 3882 5.324409 TGTGGCAGTCCATTTAAAATCTCT 58.676 37.500 0.00 0.00 45.62 3.10
3554 3883 5.643379 TGTGGCAGTCCATTTAAAATCTC 57.357 39.130 0.00 0.00 45.62 2.75
3555 3884 5.481473 ACATGTGGCAGTCCATTTAAAATCT 59.519 36.000 0.00 0.00 45.62 2.40
3556 3885 5.723295 ACATGTGGCAGTCCATTTAAAATC 58.277 37.500 0.00 0.00 45.62 2.17
3557 3886 5.743636 ACATGTGGCAGTCCATTTAAAAT 57.256 34.783 0.00 0.00 45.62 1.82
3558 3887 5.772672 ACTACATGTGGCAGTCCATTTAAAA 59.227 36.000 9.11 0.00 45.62 1.52
3559 3888 5.321102 ACTACATGTGGCAGTCCATTTAAA 58.679 37.500 9.11 0.00 45.62 1.52
3560 3889 4.917385 ACTACATGTGGCAGTCCATTTAA 58.083 39.130 9.11 0.00 45.62 1.52
3561 3890 4.019771 TGACTACATGTGGCAGTCCATTTA 60.020 41.667 19.73 3.38 45.62 1.40
3562 3891 3.244875 TGACTACATGTGGCAGTCCATTT 60.245 43.478 19.73 0.00 45.62 2.32
3563 3892 2.305635 TGACTACATGTGGCAGTCCATT 59.694 45.455 19.73 0.00 45.62 3.16
3564 3893 1.908619 TGACTACATGTGGCAGTCCAT 59.091 47.619 19.73 0.00 45.62 3.41
3565 3894 1.001974 GTGACTACATGTGGCAGTCCA 59.998 52.381 19.73 9.03 38.32 4.02
3566 3895 1.276421 AGTGACTACATGTGGCAGTCC 59.724 52.381 19.73 13.09 38.32 3.85
3567 3896 2.738846 CAAGTGACTACATGTGGCAGTC 59.261 50.000 16.96 16.96 39.32 3.51
3568 3897 2.104792 ACAAGTGACTACATGTGGCAGT 59.895 45.455 9.11 3.70 37.35 4.40
3569 3898 2.771089 ACAAGTGACTACATGTGGCAG 58.229 47.619 9.11 0.00 37.35 4.85
3570 3899 2.877786 CAACAAGTGACTACATGTGGCA 59.122 45.455 9.11 4.03 38.60 4.92
3571 3900 3.138304 TCAACAAGTGACTACATGTGGC 58.862 45.455 9.11 1.04 38.60 5.01
3572 3901 5.749596 TTTCAACAAGTGACTACATGTGG 57.250 39.130 9.11 8.41 38.60 4.17
3573 3902 7.194607 AGATTTCAACAAGTGACTACATGTG 57.805 36.000 9.11 0.93 38.60 3.21
3574 3903 7.498900 TGAAGATTTCAACAAGTGACTACATGT 59.501 33.333 2.69 2.69 40.17 3.21
3575 3904 7.864686 TGAAGATTTCAACAAGTGACTACATG 58.135 34.615 0.00 0.00 36.59 3.21
3576 3905 7.933577 TCTGAAGATTTCAACAAGTGACTACAT 59.066 33.333 0.00 0.00 39.58 2.29
3577 3906 7.272244 TCTGAAGATTTCAACAAGTGACTACA 58.728 34.615 0.00 0.00 39.58 2.74
3578 3907 7.715265 TCTGAAGATTTCAACAAGTGACTAC 57.285 36.000 0.00 0.00 39.58 2.73
3579 3908 8.731275 TTTCTGAAGATTTCAACAAGTGACTA 57.269 30.769 0.00 0.00 39.58 2.59
3580 3909 7.554118 TCTTTCTGAAGATTTCAACAAGTGACT 59.446 33.333 0.00 0.00 39.58 3.41
3581 3910 7.641802 GTCTTTCTGAAGATTTCAACAAGTGAC 59.358 37.037 0.00 0.00 43.41 3.67
3582 3911 7.336679 TGTCTTTCTGAAGATTTCAACAAGTGA 59.663 33.333 0.00 0.00 43.41 3.41
3583 3912 7.475015 TGTCTTTCTGAAGATTTCAACAAGTG 58.525 34.615 0.00 0.00 43.41 3.16
3584 3913 7.630242 TGTCTTTCTGAAGATTTCAACAAGT 57.370 32.000 0.00 0.00 43.41 3.16
3585 3914 8.915871 TTTGTCTTTCTGAAGATTTCAACAAG 57.084 30.769 6.28 5.35 43.41 3.16
3596 3925 9.055248 CGTTGCTAAATATTTGTCTTTCTGAAG 57.945 33.333 11.05 0.00 0.00 3.02
3597 3926 8.020819 CCGTTGCTAAATATTTGTCTTTCTGAA 58.979 33.333 11.05 0.00 0.00 3.02
3598 3927 7.389330 TCCGTTGCTAAATATTTGTCTTTCTGA 59.611 33.333 11.05 0.00 0.00 3.27
3599 3928 7.526608 TCCGTTGCTAAATATTTGTCTTTCTG 58.473 34.615 11.05 0.00 0.00 3.02
3600 3929 7.606456 TCTCCGTTGCTAAATATTTGTCTTTCT 59.394 33.333 11.05 0.00 0.00 2.52
3601 3930 7.748847 TCTCCGTTGCTAAATATTTGTCTTTC 58.251 34.615 11.05 0.00 0.00 2.62
3602 3931 7.606456 TCTCTCCGTTGCTAAATATTTGTCTTT 59.394 33.333 11.05 0.00 0.00 2.52
3603 3932 7.103641 TCTCTCCGTTGCTAAATATTTGTCTT 58.896 34.615 11.05 0.00 0.00 3.01
3604 3933 6.640518 TCTCTCCGTTGCTAAATATTTGTCT 58.359 36.000 11.05 0.00 0.00 3.41
3605 3934 6.535508 ACTCTCTCCGTTGCTAAATATTTGTC 59.464 38.462 11.05 3.17 0.00 3.18
3606 3935 6.407202 ACTCTCTCCGTTGCTAAATATTTGT 58.593 36.000 11.05 0.00 0.00 2.83
3607 3936 6.910536 ACTCTCTCCGTTGCTAAATATTTG 57.089 37.500 11.05 2.59 0.00 2.32
3608 3937 8.008513 TCTACTCTCTCCGTTGCTAAATATTT 57.991 34.615 5.89 5.89 0.00 1.40
3609 3938 7.584122 TCTACTCTCTCCGTTGCTAAATATT 57.416 36.000 0.00 0.00 0.00 1.28
3610 3939 7.094118 GGATCTACTCTCTCCGTTGCTAAATAT 60.094 40.741 0.00 0.00 0.00 1.28
3611 3940 6.207025 GGATCTACTCTCTCCGTTGCTAAATA 59.793 42.308 0.00 0.00 0.00 1.40
3612 3941 5.010213 GGATCTACTCTCTCCGTTGCTAAAT 59.990 44.000 0.00 0.00 0.00 1.40
3613 3942 4.338682 GGATCTACTCTCTCCGTTGCTAAA 59.661 45.833 0.00 0.00 0.00 1.85
3614 3943 3.884091 GGATCTACTCTCTCCGTTGCTAA 59.116 47.826 0.00 0.00 0.00 3.09
3615 3944 3.136809 AGGATCTACTCTCTCCGTTGCTA 59.863 47.826 0.00 0.00 34.13 3.49
3616 3945 2.092103 AGGATCTACTCTCTCCGTTGCT 60.092 50.000 0.00 0.00 34.13 3.91
3617 3946 2.303175 AGGATCTACTCTCTCCGTTGC 58.697 52.381 0.00 0.00 34.13 4.17
3618 3947 4.993029 AAAGGATCTACTCTCTCCGTTG 57.007 45.455 0.00 0.00 34.13 4.10
3619 3948 5.017490 TGAAAAGGATCTACTCTCTCCGTT 58.983 41.667 0.00 0.00 33.07 4.44
3620 3949 4.601084 TGAAAAGGATCTACTCTCTCCGT 58.399 43.478 0.00 0.00 34.13 4.69
3621 3950 5.782893 ATGAAAAGGATCTACTCTCTCCG 57.217 43.478 0.00 0.00 34.13 4.63
3622 3951 7.151976 GCTAATGAAAAGGATCTACTCTCTCC 58.848 42.308 0.00 0.00 0.00 3.71
3623 3952 7.721402 TGCTAATGAAAAGGATCTACTCTCTC 58.279 38.462 0.00 0.00 0.00 3.20
3624 3953 7.667575 TGCTAATGAAAAGGATCTACTCTCT 57.332 36.000 0.00 0.00 0.00 3.10
3625 3954 7.984617 ACTTGCTAATGAAAAGGATCTACTCTC 59.015 37.037 0.00 0.00 0.00 3.20
3626 3955 7.856415 ACTTGCTAATGAAAAGGATCTACTCT 58.144 34.615 0.00 0.00 0.00 3.24
3627 3956 8.499403 AACTTGCTAATGAAAAGGATCTACTC 57.501 34.615 0.00 0.00 0.00 2.59
3628 3957 8.103305 TGAACTTGCTAATGAAAAGGATCTACT 58.897 33.333 0.00 0.00 0.00 2.57
3629 3958 8.268850 TGAACTTGCTAATGAAAAGGATCTAC 57.731 34.615 0.00 0.00 0.00 2.59
3630 3959 8.862325 TTGAACTTGCTAATGAAAAGGATCTA 57.138 30.769 0.00 0.00 0.00 1.98
3631 3960 7.765695 TTGAACTTGCTAATGAAAAGGATCT 57.234 32.000 0.00 0.00 0.00 2.75
3632 3961 8.992835 ATTTGAACTTGCTAATGAAAAGGATC 57.007 30.769 0.00 0.00 0.00 3.36
3633 3962 9.783081 AAATTTGAACTTGCTAATGAAAAGGAT 57.217 25.926 0.00 0.00 0.00 3.24
3634 3963 9.044150 CAAATTTGAACTTGCTAATGAAAAGGA 57.956 29.630 13.08 0.00 0.00 3.36
3635 3964 8.284693 CCAAATTTGAACTTGCTAATGAAAAGG 58.715 33.333 19.86 0.00 0.00 3.11
3636 3965 8.284693 CCCAAATTTGAACTTGCTAATGAAAAG 58.715 33.333 19.86 0.00 0.00 2.27
3679 4008 1.000843 TGGTGTCAGTCAGGATCAACG 59.999 52.381 0.00 0.00 0.00 4.10
3691 4020 1.039068 TGGCAAATGGTTGGTGTCAG 58.961 50.000 0.00 0.00 35.10 3.51
3699 4028 5.659440 AACGATCTATTTGGCAAATGGTT 57.341 34.783 30.48 23.39 31.96 3.67
3753 4082 5.853936 TGCAATGTCTCTGTAACTGTAACT 58.146 37.500 0.00 0.00 0.00 2.24
3774 4103 4.811024 TGAAAATACATCGAGTCTCCATGC 59.189 41.667 7.31 0.00 0.00 4.06
3783 4112 9.995379 CGTATCAAACTATGAAAATACATCGAG 57.005 33.333 0.00 0.00 42.54 4.04
3871 4210 1.329171 TGCTTGTTGTTTGGCCTGCT 61.329 50.000 3.32 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.