Multiple sequence alignment - TraesCS4D01G232200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G232200 chr4D 100.000 3727 0 0 1 3727 392729551 392725825 0.000000e+00 6883.0
1 TraesCS4D01G232200 chr4D 91.457 199 15 1 3529 3727 444172232 444172428 4.740000e-69 272.0
2 TraesCS4D01G232200 chr4A 90.008 2442 95 48 710 3067 74153157 74150781 0.000000e+00 3020.0
3 TraesCS4D01G232200 chr4A 91.358 243 15 3 406 642 74153759 74153517 9.980000e-86 327.0
4 TraesCS4D01G232200 chr4A 96.410 195 3 3 1 194 74154271 74154080 6.010000e-83 318.0
5 TraesCS4D01G232200 chr4A 92.268 194 14 1 3535 3727 704518366 704518559 1.320000e-69 274.0
6 TraesCS4D01G232200 chr4A 81.893 243 23 10 3163 3386 74150605 74150365 6.360000e-43 185.0
7 TraesCS4D01G232200 chr4A 94.186 86 4 1 3068 3152 74150735 74150650 3.020000e-26 130.0
8 TraesCS4D01G232200 chr4A 83.108 148 10 10 194 327 74154053 74153907 1.820000e-23 121.0
9 TraesCS4D01G232200 chr4A 90.000 80 4 1 331 406 74153876 74153797 2.370000e-17 100.0
10 TraesCS4D01G232200 chr4A 96.154 52 1 1 655 706 74153527 74153477 2.390000e-12 84.2
11 TraesCS4D01G232200 chr4B 92.234 1352 42 31 1574 2879 482646005 482644671 0.000000e+00 1857.0
12 TraesCS4D01G232200 chr4B 86.551 1331 74 41 326 1573 482647356 482646048 0.000000e+00 1369.0
13 TraesCS4D01G232200 chr4B 98.969 194 2 0 1 194 482647738 482647545 7.660000e-92 348.0
14 TraesCS4D01G232200 chr4B 95.349 86 3 1 3068 3152 482644531 482644446 6.490000e-28 135.0
15 TraesCS4D01G232200 chr7D 92.893 197 13 1 3531 3727 576645035 576644840 6.090000e-73 285.0
16 TraesCS4D01G232200 chr7D 91.414 198 15 2 3531 3727 145920052 145919856 1.710000e-68 270.0
17 TraesCS4D01G232200 chr3B 92.746 193 14 0 3535 3727 49156615 49156423 2.830000e-71 279.0
18 TraesCS4D01G232200 chr6D 92.708 192 13 1 3537 3727 101727293 101727102 3.670000e-70 276.0
19 TraesCS4D01G232200 chr2D 91.919 198 14 2 3531 3727 425744802 425744606 3.670000e-70 276.0
20 TraesCS4D01G232200 chr2D 90.686 204 17 2 3525 3727 276936758 276936556 1.710000e-68 270.0
21 TraesCS4D01G232200 chr1D 91.878 197 16 0 3531 3727 467389062 467389258 3.670000e-70 276.0
22 TraesCS4D01G232200 chr6A 89.404 151 15 1 3388 3538 30899541 30899392 4.910000e-44 189.0
23 TraesCS4D01G232200 chr2B 91.489 47 4 0 2681 2727 10991504 10991458 8.640000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G232200 chr4D 392725825 392729551 3726 True 6883.00 6883 100.000000 1 3727 1 chr4D.!!$R1 3726
1 TraesCS4D01G232200 chr4A 74150365 74154271 3906 True 535.65 3020 90.389625 1 3386 8 chr4A.!!$R1 3385
2 TraesCS4D01G232200 chr4B 482644446 482647738 3292 True 927.25 1857 93.275750 1 3152 4 chr4B.!!$R1 3151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 587 0.108804 CTCCGTGTTACACTGGCGAT 60.109 55.0 13.86 0.0 31.68 4.58 F
648 770 0.319900 CCGCATCGTCCAAGGATAGG 60.320 60.0 0.00 0.0 0.00 2.57 F
814 1258 0.737367 CACGTCTCATGCCGTCACAT 60.737 55.0 2.54 0.0 34.59 3.21 F
2313 2883 0.603569 AGTGAGTGACCGATGTGTCC 59.396 55.0 0.00 0.0 34.25 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 1882 0.319727 TTGCTTCAGCGGCAAATTGG 60.320 50.0 1.45 0.00 45.05 3.16 R
1912 2469 0.712380 AATTCCTGTCAGGGGCCATT 59.288 50.0 19.11 9.33 35.59 3.16 R
2351 2921 0.767375 TGCAGAACTCCCTCAGCTTT 59.233 50.0 0.00 0.00 0.00 3.51 R
3540 4250 0.032952 ACACGTGTGGCAGTTATCGT 59.967 50.0 22.71 0.00 34.19 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.618287 TGTTTGAGATTAGGCCATTATTCG 57.382 37.500 5.01 0.00 0.00 3.34
160 162 3.320826 ACTTTGTTGAACCATAACAGCCC 59.679 43.478 0.00 0.00 39.03 5.19
196 225 3.244875 TGCAAGTTCCTATGGCAGAAAGA 60.245 43.478 0.00 0.00 0.00 2.52
223 252 1.656587 TGCCCAGTTGATCTGTACCT 58.343 50.000 0.00 0.00 42.19 3.08
228 257 4.003648 CCCAGTTGATCTGTACCTTTGTC 58.996 47.826 0.00 0.00 42.19 3.18
406 480 4.106029 TCGGTACAGATTACAGAAGCAC 57.894 45.455 0.00 0.00 0.00 4.40
407 481 3.508402 TCGGTACAGATTACAGAAGCACA 59.492 43.478 0.00 0.00 0.00 4.57
408 482 3.859961 CGGTACAGATTACAGAAGCACAG 59.140 47.826 0.00 0.00 0.00 3.66
409 483 4.618460 CGGTACAGATTACAGAAGCACAGT 60.618 45.833 0.00 0.00 0.00 3.55
416 528 9.502091 ACAGATTACAGAAGCACAGTTTATTAA 57.498 29.630 0.00 0.00 0.00 1.40
471 587 0.108804 CTCCGTGTTACACTGGCGAT 60.109 55.000 13.86 0.00 31.68 4.58
600 716 2.663196 GTGCCGGTTCTAGCAGGT 59.337 61.111 1.90 0.00 40.28 4.00
624 740 2.416431 GCATGATCAGCGCCTTTCTTTT 60.416 45.455 2.29 0.00 0.00 2.27
625 741 2.995466 TGATCAGCGCCTTTCTTTTG 57.005 45.000 2.29 0.00 0.00 2.44
637 759 1.803334 TTCTTTTGTAGCCGCATCGT 58.197 45.000 0.00 0.00 0.00 3.73
639 761 0.373716 CTTTTGTAGCCGCATCGTCC 59.626 55.000 0.00 0.00 0.00 4.79
640 762 0.320858 TTTTGTAGCCGCATCGTCCA 60.321 50.000 0.00 0.00 0.00 4.02
643 765 1.883084 GTAGCCGCATCGTCCAAGG 60.883 63.158 0.00 0.00 0.00 3.61
645 767 1.399744 TAGCCGCATCGTCCAAGGAT 61.400 55.000 0.00 0.00 0.00 3.24
647 769 0.946221 GCCGCATCGTCCAAGGATAG 60.946 60.000 0.00 0.00 0.00 2.08
648 770 0.319900 CCGCATCGTCCAAGGATAGG 60.320 60.000 0.00 0.00 0.00 2.57
711 1153 1.201647 GCTGCGTCTAGACTAACACCA 59.798 52.381 20.34 7.06 0.00 4.17
713 1155 3.502920 CTGCGTCTAGACTAACACCAAG 58.497 50.000 20.34 3.05 0.00 3.61
812 1256 2.730672 GCACGTCTCATGCCGTCAC 61.731 63.158 2.54 0.00 37.08 3.67
813 1257 1.372872 CACGTCTCATGCCGTCACA 60.373 57.895 2.54 0.00 34.59 3.58
814 1258 0.737367 CACGTCTCATGCCGTCACAT 60.737 55.000 2.54 0.00 34.59 3.21
816 1260 1.717937 GTCTCATGCCGTCACATGC 59.282 57.895 0.00 0.00 45.75 4.06
817 1261 1.450134 TCTCATGCCGTCACATGCC 60.450 57.895 0.00 0.00 45.75 4.40
818 1262 2.816360 CTCATGCCGTCACATGCCG 61.816 63.158 0.00 0.00 45.75 5.69
819 1263 3.126879 CATGCCGTCACATGCCGT 61.127 61.111 0.00 0.00 40.89 5.68
820 1264 2.819595 ATGCCGTCACATGCCGTC 60.820 61.111 0.00 0.00 0.00 4.79
821 1265 3.604129 ATGCCGTCACATGCCGTCA 62.604 57.895 0.00 0.00 0.00 4.35
910 1365 1.418637 TGCAACTAACCCGAGTCCTTT 59.581 47.619 0.00 0.00 0.00 3.11
1275 1741 1.445095 CGCCCATCTCCTCCTCTTG 59.555 63.158 0.00 0.00 0.00 3.02
1280 1746 1.413445 CCATCTCCTCCTCTTGCTCAG 59.587 57.143 0.00 0.00 0.00 3.35
1281 1747 2.386779 CATCTCCTCCTCTTGCTCAGA 58.613 52.381 0.00 0.00 0.00 3.27
1282 1748 2.844654 TCTCCTCCTCTTGCTCAGAT 57.155 50.000 0.00 0.00 0.00 2.90
1283 1749 3.113191 TCTCCTCCTCTTGCTCAGATT 57.887 47.619 0.00 0.00 0.00 2.40
1284 1750 3.448934 TCTCCTCCTCTTGCTCAGATTT 58.551 45.455 0.00 0.00 0.00 2.17
1285 1751 3.450457 TCTCCTCCTCTTGCTCAGATTTC 59.550 47.826 0.00 0.00 0.00 2.17
1313 1779 6.046290 TCGCTTGGATCTCATGATAATCAT 57.954 37.500 16.06 0.00 37.65 2.45
1353 1819 1.154016 CGGTCGTGTAGCACTGAGG 60.154 63.158 0.00 0.00 31.34 3.86
1357 1823 1.132643 GTCGTGTAGCACTGAGGTAGG 59.867 57.143 0.00 0.00 31.34 3.18
1372 1838 6.943718 ACTGAGGTAGGAGTATTACAGCTATC 59.056 42.308 0.00 0.00 0.00 2.08
1392 1862 2.237143 TCCTGTCTGTGATTAAGGCCTG 59.763 50.000 5.69 0.00 0.00 4.85
1397 1867 4.761739 TGTCTGTGATTAAGGCCTGAAAAG 59.238 41.667 5.69 2.31 0.00 2.27
1412 1882 3.401182 TGAAAAGCATGGAACCAATTGC 58.599 40.909 10.36 10.36 33.54 3.56
1504 1993 4.207165 ACTACATGGGACCAATTGCATAC 58.793 43.478 0.00 0.00 0.00 2.39
1532 2026 1.308998 CTGACCGCTTGAAAACCACT 58.691 50.000 0.00 0.00 0.00 4.00
1638 2174 1.959226 ACACATCAACGGTGTCGGC 60.959 57.895 0.00 0.00 45.89 5.54
1662 2198 3.208747 AGTTCCAACAAACGTGGATCT 57.791 42.857 0.00 0.00 44.62 2.75
1771 2310 2.292103 CAGAAGACACTAGCTGGAGC 57.708 55.000 3.17 0.00 42.49 4.70
1844 2401 2.885861 GATCGACTCACGGGCACT 59.114 61.111 0.00 0.00 42.82 4.40
1919 2476 6.543735 ACTATTATTGGTTAGAGAATGGCCC 58.456 40.000 0.00 0.00 0.00 5.80
1963 2523 3.753774 GCATCCGCGTAATGAATGG 57.246 52.632 19.40 0.00 0.00 3.16
2228 2788 4.191544 CGTCAATCAGGTCACCATACATT 58.808 43.478 0.00 0.00 0.00 2.71
2242 2802 7.866393 GTCACCATACATTCCTACATACAGTAC 59.134 40.741 0.00 0.00 0.00 2.73
2311 2881 1.335964 CGAAGTGAGTGACCGATGTGT 60.336 52.381 0.00 0.00 0.00 3.72
2313 2883 0.603569 AGTGAGTGACCGATGTGTCC 59.396 55.000 0.00 0.00 34.25 4.02
2351 2921 4.007644 CCGGTGTGGCAGCAGAGA 62.008 66.667 0.00 0.00 0.00 3.10
2571 3141 4.807631 TCGACGAGGCCCGGATGA 62.808 66.667 16.44 8.89 43.93 2.92
2750 3320 2.118513 AGTGGAGAGGCCGACTGT 59.881 61.111 10.06 0.00 40.66 3.55
2767 3337 4.710695 TCCGGCGCTACGTGTGTG 62.711 66.667 7.64 0.00 0.00 3.82
2770 3340 3.777925 GGCGCTACGTGTGTGCTG 61.778 66.667 21.81 9.21 40.39 4.41
2791 3378 1.039233 GTGTCATCCTTGGCCATGGG 61.039 60.000 31.62 24.13 0.00 4.00
2896 3494 4.130118 CTGCCGCATTTAAGGAGAGTTAT 58.870 43.478 0.00 0.00 0.00 1.89
2972 3570 3.419793 TGTTCCAAGGGCAGAACAG 57.580 52.632 1.63 0.00 45.53 3.16
2975 3573 1.609072 GTTCCAAGGGCAGAACAGAAC 59.391 52.381 0.00 0.00 41.62 3.01
2976 3574 0.843309 TCCAAGGGCAGAACAGAACA 59.157 50.000 0.00 0.00 0.00 3.18
2979 3577 2.430332 CCAAGGGCAGAACAGAACAAAA 59.570 45.455 0.00 0.00 0.00 2.44
2980 3578 3.118811 CCAAGGGCAGAACAGAACAAAAA 60.119 43.478 0.00 0.00 0.00 1.94
2981 3579 4.114794 CAAGGGCAGAACAGAACAAAAAG 58.885 43.478 0.00 0.00 0.00 2.27
2982 3580 3.631250 AGGGCAGAACAGAACAAAAAGA 58.369 40.909 0.00 0.00 0.00 2.52
2983 3581 4.023291 AGGGCAGAACAGAACAAAAAGAA 58.977 39.130 0.00 0.00 0.00 2.52
2984 3582 4.098501 AGGGCAGAACAGAACAAAAAGAAG 59.901 41.667 0.00 0.00 0.00 2.85
2985 3583 4.142160 GGGCAGAACAGAACAAAAAGAAGT 60.142 41.667 0.00 0.00 0.00 3.01
2986 3584 4.800471 GGCAGAACAGAACAAAAAGAAGTG 59.200 41.667 0.00 0.00 0.00 3.16
2987 3585 5.402398 GCAGAACAGAACAAAAAGAAGTGT 58.598 37.500 0.00 0.00 0.00 3.55
2988 3586 5.287035 GCAGAACAGAACAAAAAGAAGTGTG 59.713 40.000 0.00 0.00 0.00 3.82
2989 3587 6.381801 CAGAACAGAACAAAAAGAAGTGTGT 58.618 36.000 0.00 0.00 0.00 3.72
2990 3588 7.526608 CAGAACAGAACAAAAAGAAGTGTGTA 58.473 34.615 0.00 0.00 0.00 2.90
2991 3589 8.184192 CAGAACAGAACAAAAAGAAGTGTGTAT 58.816 33.333 0.00 0.00 0.00 2.29
2992 3590 8.184192 AGAACAGAACAAAAAGAAGTGTGTATG 58.816 33.333 0.00 0.00 0.00 2.39
3156 3804 3.349006 CGAAGTGCCGTGCTTGCT 61.349 61.111 0.00 0.00 0.00 3.91
3157 3805 2.896801 CGAAGTGCCGTGCTTGCTT 61.897 57.895 0.00 0.00 0.00 3.91
3158 3806 1.360192 GAAGTGCCGTGCTTGCTTT 59.640 52.632 0.00 0.00 0.00 3.51
3159 3807 0.249031 GAAGTGCCGTGCTTGCTTTT 60.249 50.000 0.00 0.00 0.00 2.27
3160 3808 1.001815 GAAGTGCCGTGCTTGCTTTTA 60.002 47.619 0.00 0.00 0.00 1.52
3161 3809 0.593128 AGTGCCGTGCTTGCTTTTAG 59.407 50.000 0.00 0.00 0.00 1.85
3167 3849 3.740832 GCCGTGCTTGCTTTTAGAAAAAT 59.259 39.130 0.00 0.00 0.00 1.82
3179 3861 6.309009 GCTTTTAGAAAAATGGTAGCTCTTGC 59.691 38.462 0.00 0.00 40.05 4.01
3232 3914 2.112087 TTGCAGTGCCGGTGCTAA 59.888 55.556 13.72 6.68 41.78 3.09
3234 3916 3.804193 GCAGTGCCGGTGCTAAGC 61.804 66.667 2.85 0.00 37.96 3.09
3259 3941 3.110358 CGTACGTCAAGTGTGTGAGAAA 58.890 45.455 7.22 0.00 0.00 2.52
3260 3942 3.061403 CGTACGTCAAGTGTGTGAGAAAC 60.061 47.826 7.22 0.00 0.00 2.78
3262 3944 2.930040 ACGTCAAGTGTGTGAGAAACTG 59.070 45.455 0.00 0.00 0.00 3.16
3263 3945 2.285834 CGTCAAGTGTGTGAGAAACTGC 60.286 50.000 0.00 0.00 0.00 4.40
3265 3947 2.677836 TCAAGTGTGTGAGAAACTGCAC 59.322 45.455 0.00 0.00 36.38 4.57
3266 3948 2.401583 AGTGTGTGAGAAACTGCACA 57.598 45.000 0.00 0.00 42.25 4.57
3267 3949 2.923121 AGTGTGTGAGAAACTGCACAT 58.077 42.857 0.00 0.00 45.59 3.21
3268 3950 3.282021 AGTGTGTGAGAAACTGCACATT 58.718 40.909 0.00 0.00 45.59 2.71
3269 3951 3.696051 AGTGTGTGAGAAACTGCACATTT 59.304 39.130 0.00 0.00 45.59 2.32
3270 3952 3.792956 GTGTGTGAGAAACTGCACATTTG 59.207 43.478 0.00 0.00 45.59 2.32
3271 3953 3.443329 TGTGTGAGAAACTGCACATTTGT 59.557 39.130 0.00 0.00 45.59 2.83
3272 3954 4.037690 GTGTGAGAAACTGCACATTTGTC 58.962 43.478 8.27 8.27 45.59 3.18
3273 3955 3.693578 TGTGAGAAACTGCACATTTGTCA 59.306 39.130 12.22 12.22 39.86 3.58
3274 3956 4.338964 TGTGAGAAACTGCACATTTGTCAT 59.661 37.500 16.91 0.00 40.28 3.06
3329 4039 2.285977 CAAGTACTACCCATTTCGGCC 58.714 52.381 0.00 0.00 0.00 6.13
3346 4056 0.815615 GCCCCTGAAATACTCCGCTG 60.816 60.000 0.00 0.00 0.00 5.18
3360 4070 1.028330 CCGCTGCTGATGTCCATGTT 61.028 55.000 0.00 0.00 0.00 2.71
3368 4078 4.455533 TGCTGATGTCCATGTTTGTTAGTC 59.544 41.667 0.00 0.00 0.00 2.59
3376 4086 5.473504 GTCCATGTTTGTTAGTCCTGAACAT 59.526 40.000 0.00 0.00 40.46 2.71
3386 4096 3.866651 AGTCCTGAACATTCCGAGAATG 58.133 45.455 19.02 19.02 0.00 2.67
3387 4097 3.261897 AGTCCTGAACATTCCGAGAATGT 59.738 43.478 20.01 20.01 42.19 2.71
3388 4098 4.466370 AGTCCTGAACATTCCGAGAATGTA 59.534 41.667 23.62 13.57 39.73 2.29
3389 4099 4.567159 GTCCTGAACATTCCGAGAATGTAC 59.433 45.833 23.62 16.88 39.73 2.90
3390 4100 4.466370 TCCTGAACATTCCGAGAATGTACT 59.534 41.667 23.62 14.33 39.73 2.73
3391 4101 4.806247 CCTGAACATTCCGAGAATGTACTC 59.194 45.833 23.62 19.74 39.73 2.59
3392 4102 5.394663 CCTGAACATTCCGAGAATGTACTCT 60.395 44.000 23.62 13.55 39.73 3.24
3393 4103 6.183360 CCTGAACATTCCGAGAATGTACTCTA 60.183 42.308 23.62 12.98 39.73 2.43
3394 4104 6.561614 TGAACATTCCGAGAATGTACTCTAC 58.438 40.000 23.62 14.80 39.73 2.59
3395 4105 6.377429 TGAACATTCCGAGAATGTACTCTACT 59.623 38.462 23.62 12.26 39.73 2.57
3396 4106 7.555195 TGAACATTCCGAGAATGTACTCTACTA 59.445 37.037 23.62 8.04 39.73 1.82
3397 4107 7.499321 ACATTCCGAGAATGTACTCTACTAG 57.501 40.000 22.66 0.00 38.94 2.57
3398 4108 6.487331 ACATTCCGAGAATGTACTCTACTAGG 59.513 42.308 22.66 0.00 38.94 3.02
3399 4109 5.883685 TCCGAGAATGTACTCTACTAGGA 57.116 43.478 0.00 0.00 35.06 2.94
3400 4110 6.436738 TCCGAGAATGTACTCTACTAGGAT 57.563 41.667 0.00 0.00 35.06 3.24
3401 4111 6.839454 TCCGAGAATGTACTCTACTAGGATT 58.161 40.000 0.00 0.00 35.06 3.01
3402 4112 7.288560 TCCGAGAATGTACTCTACTAGGATTT 58.711 38.462 0.00 0.00 35.06 2.17
3403 4113 7.228906 TCCGAGAATGTACTCTACTAGGATTTG 59.771 40.741 0.00 0.00 35.06 2.32
3404 4114 7.364200 CGAGAATGTACTCTACTAGGATTTGG 58.636 42.308 0.00 0.00 35.06 3.28
3405 4115 7.522399 CGAGAATGTACTCTACTAGGATTTGGG 60.522 44.444 0.00 0.00 35.06 4.12
3406 4116 7.363031 AGAATGTACTCTACTAGGATTTGGGA 58.637 38.462 0.00 0.00 0.00 4.37
3407 4117 8.013667 AGAATGTACTCTACTAGGATTTGGGAT 58.986 37.037 0.00 0.00 0.00 3.85
3408 4118 6.978674 TGTACTCTACTAGGATTTGGGATG 57.021 41.667 0.00 0.00 0.00 3.51
3409 4119 4.965200 ACTCTACTAGGATTTGGGATGC 57.035 45.455 0.00 0.00 0.00 3.91
3410 4120 3.322254 ACTCTACTAGGATTTGGGATGCG 59.678 47.826 0.00 0.00 0.00 4.73
3411 4121 3.572642 TCTACTAGGATTTGGGATGCGA 58.427 45.455 0.00 0.00 0.00 5.10
3412 4122 4.160329 TCTACTAGGATTTGGGATGCGAT 58.840 43.478 0.00 0.00 0.00 4.58
3413 4123 3.409026 ACTAGGATTTGGGATGCGATC 57.591 47.619 0.00 0.00 0.00 3.69
3414 4124 2.705658 ACTAGGATTTGGGATGCGATCA 59.294 45.455 0.00 0.00 0.00 2.92
3415 4125 2.734755 AGGATTTGGGATGCGATCAA 57.265 45.000 0.00 0.00 0.00 2.57
3416 4126 3.234234 AGGATTTGGGATGCGATCAAT 57.766 42.857 0.00 0.00 0.00 2.57
3417 4127 2.889045 AGGATTTGGGATGCGATCAATG 59.111 45.455 0.00 0.00 0.00 2.82
3418 4128 2.608752 GGATTTGGGATGCGATCAATGC 60.609 50.000 0.00 0.00 0.00 3.56
3424 4134 4.246053 TGCGATCAATGCATGGCT 57.754 50.000 0.00 0.00 37.44 4.75
3425 4135 1.731093 TGCGATCAATGCATGGCTG 59.269 52.632 0.00 0.00 37.44 4.85
3426 4136 1.007734 GCGATCAATGCATGGCTGG 60.008 57.895 0.00 0.00 0.00 4.85
3427 4137 1.658114 CGATCAATGCATGGCTGGG 59.342 57.895 0.00 0.00 0.00 4.45
3428 4138 1.802337 CGATCAATGCATGGCTGGGG 61.802 60.000 0.00 0.00 0.00 4.96
3429 4139 0.468585 GATCAATGCATGGCTGGGGA 60.469 55.000 0.00 0.00 0.00 4.81
3430 4140 0.190069 ATCAATGCATGGCTGGGGAT 59.810 50.000 0.00 0.00 0.00 3.85
3431 4141 0.757561 TCAATGCATGGCTGGGGATG 60.758 55.000 0.00 0.00 0.00 3.51
3432 4142 2.138179 AATGCATGGCTGGGGATGC 61.138 57.895 0.00 0.00 44.42 3.91
3434 4144 2.760799 GCATGGCTGGGGATGCAA 60.761 61.111 0.00 0.00 43.75 4.08
3435 4145 2.138179 GCATGGCTGGGGATGCAAT 61.138 57.895 0.00 0.00 43.75 3.56
3436 4146 2.046938 CATGGCTGGGGATGCAATC 58.953 57.895 0.00 0.00 44.55 2.67
3437 4147 0.469331 CATGGCTGGGGATGCAATCT 60.469 55.000 0.00 0.00 44.71 2.40
3438 4148 0.178970 ATGGCTGGGGATGCAATCTC 60.179 55.000 0.00 0.00 45.45 2.75
3445 4155 1.964552 GGGATGCAATCTCAGGTCAG 58.035 55.000 0.00 0.00 45.51 3.51
3446 4156 1.211457 GGGATGCAATCTCAGGTCAGT 59.789 52.381 0.00 0.00 45.51 3.41
3447 4157 2.356535 GGGATGCAATCTCAGGTCAGTT 60.357 50.000 0.00 0.00 45.51 3.16
3448 4158 2.941720 GGATGCAATCTCAGGTCAGTTC 59.058 50.000 0.00 0.00 44.71 3.01
3449 4159 2.479566 TGCAATCTCAGGTCAGTTCC 57.520 50.000 0.00 0.00 0.00 3.62
3450 4160 1.980765 TGCAATCTCAGGTCAGTTCCT 59.019 47.619 0.00 0.00 38.51 3.36
3451 4161 5.452527 GATGCAATCTCAGGTCAGTTCCTG 61.453 50.000 6.41 6.41 44.03 3.86
3456 4166 3.793060 AGGTCAGTTCCTGGTCCG 58.207 61.111 0.00 0.00 36.35 4.79
3457 4167 2.047179 GGTCAGTTCCTGGTCCGC 60.047 66.667 0.00 0.00 31.51 5.54
3458 4168 2.584391 GGTCAGTTCCTGGTCCGCT 61.584 63.158 0.00 0.00 31.51 5.52
3459 4169 1.079750 GTCAGTTCCTGGTCCGCTC 60.080 63.158 0.00 0.00 31.51 5.03
3460 4170 1.228894 TCAGTTCCTGGTCCGCTCT 60.229 57.895 0.00 0.00 31.51 4.09
3461 4171 0.832135 TCAGTTCCTGGTCCGCTCTT 60.832 55.000 0.00 0.00 31.51 2.85
3462 4172 0.390472 CAGTTCCTGGTCCGCTCTTC 60.390 60.000 0.00 0.00 0.00 2.87
3463 4173 1.079057 GTTCCTGGTCCGCTCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
3464 4174 1.535444 TTCCTGGTCCGCTCTTCCA 60.535 57.895 0.00 0.00 0.00 3.53
3465 4175 0.909610 TTCCTGGTCCGCTCTTCCAT 60.910 55.000 0.00 0.00 0.00 3.41
3466 4176 1.144936 CCTGGTCCGCTCTTCCATC 59.855 63.158 0.00 0.00 0.00 3.51
3467 4177 1.227089 CTGGTCCGCTCTTCCATCG 60.227 63.158 0.00 0.00 0.00 3.84
3468 4178 2.107141 GGTCCGCTCTTCCATCGG 59.893 66.667 0.00 0.00 44.16 4.18
3469 4179 2.722201 GGTCCGCTCTTCCATCGGT 61.722 63.158 0.00 0.00 43.35 4.69
3470 4180 1.519455 GTCCGCTCTTCCATCGGTG 60.519 63.158 0.00 0.00 43.35 4.94
3472 4182 2.892425 CGCTCTTCCATCGGTGGC 60.892 66.667 10.80 0.00 45.63 5.01
3473 4183 2.268920 GCTCTTCCATCGGTGGCA 59.731 61.111 10.80 0.00 45.63 4.92
3474 4184 1.377202 GCTCTTCCATCGGTGGCAA 60.377 57.895 10.80 4.60 45.63 4.52
3475 4185 1.648467 GCTCTTCCATCGGTGGCAAC 61.648 60.000 10.80 0.00 45.63 4.17
3476 4186 1.361668 CTCTTCCATCGGTGGCAACG 61.362 60.000 20.91 20.91 45.63 4.10
3477 4187 1.671054 CTTCCATCGGTGGCAACGT 60.671 57.895 25.79 9.60 45.63 3.99
3478 4188 1.911293 CTTCCATCGGTGGCAACGTG 61.911 60.000 25.79 20.55 45.63 4.49
3479 4189 3.430862 CCATCGGTGGCAACGTGG 61.431 66.667 25.79 25.05 39.01 4.94
3480 4190 2.668212 CATCGGTGGCAACGTGGT 60.668 61.111 25.79 9.60 42.51 4.16
3481 4191 2.668212 ATCGGTGGCAACGTGGTG 60.668 61.111 25.79 0.00 42.51 4.17
3482 4192 4.920112 TCGGTGGCAACGTGGTGG 62.920 66.667 25.79 0.00 42.51 4.61
3483 4193 4.920112 CGGTGGCAACGTGGTGGA 62.920 66.667 18.46 0.00 42.51 4.02
3484 4194 2.517402 GGTGGCAACGTGGTGGAA 60.517 61.111 0.00 0.00 42.51 3.53
3485 4195 2.719354 GTGGCAACGTGGTGGAAC 59.281 61.111 0.00 0.00 42.51 3.62
3492 4202 3.561429 CGTGGTGGAACGGACATG 58.439 61.111 0.00 0.00 39.89 3.21
3493 4203 2.032634 CGTGGTGGAACGGACATGG 61.033 63.158 0.00 0.00 39.89 3.66
3494 4204 1.072505 GTGGTGGAACGGACATGGT 59.927 57.895 0.00 0.00 38.12 3.55
3495 4205 1.072332 TGGTGGAACGGACATGGTG 59.928 57.895 0.00 0.00 38.12 4.17
3496 4206 1.674322 GGTGGAACGGACATGGTGG 60.674 63.158 0.00 0.00 38.12 4.61
3497 4207 1.674322 GTGGAACGGACATGGTGGG 60.674 63.158 0.00 0.00 0.00 4.61
3498 4208 1.843832 TGGAACGGACATGGTGGGA 60.844 57.895 0.00 0.00 0.00 4.37
3499 4209 1.204786 TGGAACGGACATGGTGGGAT 61.205 55.000 0.00 0.00 0.00 3.85
3500 4210 0.748005 GGAACGGACATGGTGGGATG 60.748 60.000 0.00 0.00 0.00 3.51
3501 4211 0.748005 GAACGGACATGGTGGGATGG 60.748 60.000 0.00 0.00 0.00 3.51
3502 4212 1.497309 AACGGACATGGTGGGATGGT 61.497 55.000 0.00 0.00 0.00 3.55
3503 4213 1.451927 CGGACATGGTGGGATGGTG 60.452 63.158 0.00 0.00 0.00 4.17
3504 4214 1.076777 GGACATGGTGGGATGGTGG 60.077 63.158 0.00 0.00 0.00 4.61
3505 4215 1.076777 GACATGGTGGGATGGTGGG 60.077 63.158 0.00 0.00 0.00 4.61
3506 4216 1.543642 ACATGGTGGGATGGTGGGA 60.544 57.895 0.00 0.00 0.00 4.37
3507 4217 1.228228 CATGGTGGGATGGTGGGAG 59.772 63.158 0.00 0.00 0.00 4.30
3508 4218 1.230281 ATGGTGGGATGGTGGGAGT 60.230 57.895 0.00 0.00 0.00 3.85
3509 4219 1.281925 ATGGTGGGATGGTGGGAGTC 61.282 60.000 0.00 0.00 0.00 3.36
3510 4220 1.923395 GGTGGGATGGTGGGAGTCA 60.923 63.158 0.00 0.00 0.00 3.41
3511 4221 1.497309 GGTGGGATGGTGGGAGTCAA 61.497 60.000 0.00 0.00 0.00 3.18
3512 4222 0.322546 GTGGGATGGTGGGAGTCAAC 60.323 60.000 0.00 0.00 0.00 3.18
3516 4226 4.739495 TGGTGGGAGTCAACAGGA 57.261 55.556 0.00 0.00 38.32 3.86
3517 4227 2.938301 TGGTGGGAGTCAACAGGAA 58.062 52.632 0.00 0.00 38.32 3.36
3518 4228 1.444933 TGGTGGGAGTCAACAGGAAT 58.555 50.000 0.00 0.00 38.32 3.01
3519 4229 1.073763 TGGTGGGAGTCAACAGGAATG 59.926 52.381 0.00 0.00 38.32 2.67
3520 4230 1.168714 GTGGGAGTCAACAGGAATGC 58.831 55.000 0.00 0.00 0.00 3.56
3521 4231 2.873797 GGGAGTCAACAGGAATGCC 58.126 57.895 0.00 0.00 44.83 4.40
3524 4234 3.567478 GGAGTCAACAGGAATGCCTAT 57.433 47.619 0.00 0.00 44.80 2.57
3525 4235 4.689612 GGAGTCAACAGGAATGCCTATA 57.310 45.455 0.00 0.00 44.80 1.31
3526 4236 5.036117 GGAGTCAACAGGAATGCCTATAA 57.964 43.478 0.00 0.00 44.80 0.98
3527 4237 5.625150 GGAGTCAACAGGAATGCCTATAAT 58.375 41.667 0.00 0.00 44.80 1.28
3528 4238 6.064717 GGAGTCAACAGGAATGCCTATAATT 58.935 40.000 0.00 0.00 44.80 1.40
3529 4239 6.205658 GGAGTCAACAGGAATGCCTATAATTC 59.794 42.308 0.00 0.00 44.80 2.17
3530 4240 6.904626 AGTCAACAGGAATGCCTATAATTCT 58.095 36.000 0.00 0.00 44.80 2.40
3531 4241 7.349598 AGTCAACAGGAATGCCTATAATTCTT 58.650 34.615 0.00 0.00 44.80 2.52
3532 4242 7.836183 AGTCAACAGGAATGCCTATAATTCTTT 59.164 33.333 0.00 0.00 44.80 2.52
3533 4243 7.917505 GTCAACAGGAATGCCTATAATTCTTTG 59.082 37.037 0.00 0.00 44.80 2.77
3534 4244 7.833682 TCAACAGGAATGCCTATAATTCTTTGA 59.166 33.333 0.00 0.00 44.80 2.69
3535 4245 7.814264 ACAGGAATGCCTATAATTCTTTGAG 57.186 36.000 0.00 0.00 44.80 3.02
3536 4246 6.774656 ACAGGAATGCCTATAATTCTTTGAGG 59.225 38.462 0.00 0.00 44.80 3.86
3537 4247 7.000472 CAGGAATGCCTATAATTCTTTGAGGA 59.000 38.462 0.00 0.00 44.80 3.71
3538 4248 7.001073 AGGAATGCCTATAATTCTTTGAGGAC 58.999 38.462 0.00 0.00 44.74 3.85
3539 4249 6.073003 GGAATGCCTATAATTCTTTGAGGACG 60.073 42.308 0.00 0.00 34.95 4.79
3540 4250 5.607939 TGCCTATAATTCTTTGAGGACGA 57.392 39.130 0.00 0.00 0.00 4.20
3541 4251 5.357257 TGCCTATAATTCTTTGAGGACGAC 58.643 41.667 0.00 0.00 0.00 4.34
3542 4252 4.444720 GCCTATAATTCTTTGAGGACGACG 59.555 45.833 0.00 0.00 0.00 5.12
3543 4253 5.735354 GCCTATAATTCTTTGAGGACGACGA 60.735 44.000 0.00 0.00 0.00 4.20
3544 4254 6.448006 CCTATAATTCTTTGAGGACGACGAT 58.552 40.000 0.00 0.00 0.00 3.73
3545 4255 7.591165 CCTATAATTCTTTGAGGACGACGATA 58.409 38.462 0.00 0.00 0.00 2.92
3546 4256 8.080417 CCTATAATTCTTTGAGGACGACGATAA 58.920 37.037 0.00 0.00 0.00 1.75
3547 4257 7.695869 ATAATTCTTTGAGGACGACGATAAC 57.304 36.000 0.00 0.00 0.00 1.89
3548 4258 4.778534 TTCTTTGAGGACGACGATAACT 57.221 40.909 0.00 0.00 0.00 2.24
3549 4259 4.092771 TCTTTGAGGACGACGATAACTG 57.907 45.455 0.00 0.00 0.00 3.16
3550 4260 2.273370 TTGAGGACGACGATAACTGC 57.727 50.000 0.00 0.00 0.00 4.40
3551 4261 0.454600 TGAGGACGACGATAACTGCC 59.545 55.000 0.00 0.00 0.00 4.85
3552 4262 0.454600 GAGGACGACGATAACTGCCA 59.545 55.000 0.00 0.00 0.00 4.92
3553 4263 0.172803 AGGACGACGATAACTGCCAC 59.827 55.000 0.00 0.00 0.00 5.01
3554 4264 0.108992 GGACGACGATAACTGCCACA 60.109 55.000 0.00 0.00 0.00 4.17
3555 4265 0.989890 GACGACGATAACTGCCACAC 59.010 55.000 0.00 0.00 0.00 3.82
3556 4266 0.731514 ACGACGATAACTGCCACACG 60.732 55.000 0.00 0.00 0.00 4.49
3557 4267 0.731514 CGACGATAACTGCCACACGT 60.732 55.000 0.00 0.00 36.71 4.49
3558 4268 0.713883 GACGATAACTGCCACACGTG 59.286 55.000 15.48 15.48 34.26 4.49
3559 4269 0.032952 ACGATAACTGCCACACGTGT 59.967 50.000 17.22 17.22 32.93 4.49
3560 4270 0.438445 CGATAACTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
3568 4278 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
3569 4279 1.567537 CACACGTGTGGGCGTTAAG 59.432 57.895 35.65 11.35 43.83 1.85
3570 4280 1.595929 ACACGTGTGGGCGTTAAGG 60.596 57.895 22.71 0.00 43.83 2.69
3571 4281 2.031465 ACGTGTGGGCGTTAAGGG 59.969 61.111 0.00 0.00 43.04 3.95
3572 4282 2.744709 CGTGTGGGCGTTAAGGGG 60.745 66.667 0.00 0.00 0.00 4.79
3573 4283 2.433004 GTGTGGGCGTTAAGGGGT 59.567 61.111 0.00 0.00 0.00 4.95
3574 4284 1.673337 GTGTGGGCGTTAAGGGGTC 60.673 63.158 0.00 0.00 0.00 4.46
3575 4285 1.844289 TGTGGGCGTTAAGGGGTCT 60.844 57.895 0.00 0.00 0.00 3.85
3576 4286 1.376812 GTGGGCGTTAAGGGGTCTG 60.377 63.158 0.00 0.00 0.00 3.51
3577 4287 2.437895 GGGCGTTAAGGGGTCTGC 60.438 66.667 0.00 0.00 0.00 4.26
3578 4288 2.349755 GGCGTTAAGGGGTCTGCA 59.650 61.111 0.00 0.00 0.00 4.41
3579 4289 2.038837 GGCGTTAAGGGGTCTGCAC 61.039 63.158 0.00 0.00 0.00 4.57
3580 4290 1.302192 GCGTTAAGGGGTCTGCACA 60.302 57.895 0.00 0.00 0.00 4.57
3581 4291 0.676782 GCGTTAAGGGGTCTGCACAT 60.677 55.000 0.00 0.00 0.00 3.21
3582 4292 1.406341 GCGTTAAGGGGTCTGCACATA 60.406 52.381 0.00 0.00 0.00 2.29
3583 4293 2.745152 GCGTTAAGGGGTCTGCACATAT 60.745 50.000 0.00 0.00 0.00 1.78
3584 4294 2.872245 CGTTAAGGGGTCTGCACATATG 59.128 50.000 0.00 0.00 0.00 1.78
3585 4295 3.681594 CGTTAAGGGGTCTGCACATATGT 60.682 47.826 1.41 1.41 0.00 2.29
3586 4296 4.270008 GTTAAGGGGTCTGCACATATGTT 58.730 43.478 5.37 0.00 0.00 2.71
3587 4297 3.456380 AAGGGGTCTGCACATATGTTT 57.544 42.857 5.37 0.00 0.00 2.83
3588 4298 3.456380 AGGGGTCTGCACATATGTTTT 57.544 42.857 5.37 0.00 0.00 2.43
3589 4299 3.091545 AGGGGTCTGCACATATGTTTTG 58.908 45.455 5.37 0.00 0.00 2.44
3590 4300 2.825532 GGGGTCTGCACATATGTTTTGT 59.174 45.455 5.37 0.00 0.00 2.83
3591 4301 3.367292 GGGGTCTGCACATATGTTTTGTG 60.367 47.826 5.37 0.00 45.74 3.33
3592 4302 3.255642 GGGTCTGCACATATGTTTTGTGT 59.744 43.478 5.37 0.00 44.96 3.72
3593 4303 4.229096 GGTCTGCACATATGTTTTGTGTG 58.771 43.478 5.37 0.00 44.96 3.82
3594 4304 4.229096 GTCTGCACATATGTTTTGTGTGG 58.771 43.478 5.37 0.00 44.96 4.17
3595 4305 3.888323 TCTGCACATATGTTTTGTGTGGT 59.112 39.130 5.37 0.00 44.96 4.16
3596 4306 3.974912 TGCACATATGTTTTGTGTGGTG 58.025 40.909 5.37 0.00 44.96 4.17
3597 4307 3.382865 TGCACATATGTTTTGTGTGGTGT 59.617 39.130 5.37 0.00 44.96 4.16
3598 4308 3.980775 GCACATATGTTTTGTGTGGTGTC 59.019 43.478 5.37 0.00 44.96 3.67
3599 4309 4.261572 GCACATATGTTTTGTGTGGTGTCT 60.262 41.667 5.37 0.00 44.96 3.41
3600 4310 5.049060 GCACATATGTTTTGTGTGGTGTCTA 60.049 40.000 5.37 0.00 44.96 2.59
3601 4311 6.514212 GCACATATGTTTTGTGTGGTGTCTAA 60.514 38.462 5.37 0.00 44.96 2.10
3602 4312 7.077605 CACATATGTTTTGTGTGGTGTCTAAG 58.922 38.462 5.37 0.00 39.66 2.18
3603 4313 6.995686 ACATATGTTTTGTGTGGTGTCTAAGA 59.004 34.615 1.41 0.00 0.00 2.10
3604 4314 7.173218 ACATATGTTTTGTGTGGTGTCTAAGAG 59.827 37.037 1.41 0.00 0.00 2.85
3605 4315 4.196193 TGTTTTGTGTGGTGTCTAAGAGG 58.804 43.478 0.00 0.00 0.00 3.69
3606 4316 4.080807 TGTTTTGTGTGGTGTCTAAGAGGA 60.081 41.667 0.00 0.00 0.00 3.71
3607 4317 3.746045 TTGTGTGGTGTCTAAGAGGAC 57.254 47.619 0.00 0.00 36.81 3.85
3608 4318 1.968493 TGTGTGGTGTCTAAGAGGACC 59.032 52.381 0.00 0.00 35.54 4.46
3609 4319 1.968493 GTGTGGTGTCTAAGAGGACCA 59.032 52.381 0.00 0.00 36.10 4.02
3610 4320 2.028930 GTGTGGTGTCTAAGAGGACCAG 60.029 54.545 0.00 0.00 39.17 4.00
3611 4321 2.249139 GTGGTGTCTAAGAGGACCAGT 58.751 52.381 0.00 0.00 39.17 4.00
3612 4322 2.633481 GTGGTGTCTAAGAGGACCAGTT 59.367 50.000 0.00 0.00 39.17 3.16
3613 4323 2.897969 TGGTGTCTAAGAGGACCAGTTC 59.102 50.000 0.00 0.00 33.44 3.01
3614 4324 2.897969 GGTGTCTAAGAGGACCAGTTCA 59.102 50.000 0.00 0.00 35.54 3.18
3615 4325 3.306156 GGTGTCTAAGAGGACCAGTTCAC 60.306 52.174 0.00 0.00 35.54 3.18
3616 4326 3.321111 GTGTCTAAGAGGACCAGTTCACA 59.679 47.826 0.00 0.00 35.54 3.58
3617 4327 3.321111 TGTCTAAGAGGACCAGTTCACAC 59.679 47.826 0.00 0.00 35.54 3.82
3618 4328 2.557056 TCTAAGAGGACCAGTTCACACG 59.443 50.000 0.00 0.00 0.00 4.49
3619 4329 1.120530 AAGAGGACCAGTTCACACGT 58.879 50.000 0.00 0.00 0.00 4.49
3620 4330 0.674534 AGAGGACCAGTTCACACGTC 59.325 55.000 0.00 0.00 0.00 4.34
3621 4331 0.674534 GAGGACCAGTTCACACGTCT 59.325 55.000 0.00 0.00 0.00 4.18
3622 4332 1.884579 GAGGACCAGTTCACACGTCTA 59.115 52.381 0.00 0.00 0.00 2.59
3623 4333 2.492484 GAGGACCAGTTCACACGTCTAT 59.508 50.000 0.00 0.00 0.00 1.98
3624 4334 2.231478 AGGACCAGTTCACACGTCTATG 59.769 50.000 0.00 0.00 0.00 2.23
3625 4335 2.029290 GGACCAGTTCACACGTCTATGT 60.029 50.000 0.00 0.00 0.00 2.29
3626 4336 3.192001 GGACCAGTTCACACGTCTATGTA 59.808 47.826 0.00 0.00 0.00 2.29
3627 4337 4.142227 GGACCAGTTCACACGTCTATGTAT 60.142 45.833 0.00 0.00 0.00 2.29
3628 4338 4.744570 ACCAGTTCACACGTCTATGTATG 58.255 43.478 0.00 0.00 0.00 2.39
3629 4339 4.112634 CCAGTTCACACGTCTATGTATGG 58.887 47.826 0.00 0.00 0.00 2.74
3630 4340 4.112634 CAGTTCACACGTCTATGTATGGG 58.887 47.826 0.00 0.00 0.00 4.00
3631 4341 2.864343 GTTCACACGTCTATGTATGGGC 59.136 50.000 0.00 0.00 0.00 5.36
3632 4342 1.066454 TCACACGTCTATGTATGGGCG 59.934 52.381 0.61 0.61 42.28 6.13
3633 4343 1.066454 CACACGTCTATGTATGGGCGA 59.934 52.381 9.18 0.00 38.73 5.54
3634 4344 1.752498 ACACGTCTATGTATGGGCGAA 59.248 47.619 9.18 0.00 38.73 4.70
3635 4345 2.166870 ACACGTCTATGTATGGGCGAAA 59.833 45.455 9.18 0.00 38.73 3.46
3636 4346 2.538449 CACGTCTATGTATGGGCGAAAC 59.462 50.000 9.18 0.00 38.73 2.78
3637 4347 2.166870 ACGTCTATGTATGGGCGAAACA 59.833 45.455 9.18 0.00 38.73 2.83
3638 4348 3.191669 CGTCTATGTATGGGCGAAACAA 58.808 45.455 0.00 0.00 38.73 2.83
3639 4349 3.000925 CGTCTATGTATGGGCGAAACAAC 59.999 47.826 0.00 0.00 38.73 3.32
3640 4350 4.189231 GTCTATGTATGGGCGAAACAACT 58.811 43.478 0.00 0.00 0.00 3.16
3641 4351 5.353938 GTCTATGTATGGGCGAAACAACTA 58.646 41.667 0.00 0.00 0.00 2.24
3642 4352 5.462398 GTCTATGTATGGGCGAAACAACTAG 59.538 44.000 0.00 0.00 0.00 2.57
3643 4353 2.352388 TGTATGGGCGAAACAACTAGC 58.648 47.619 0.00 0.00 0.00 3.42
3644 4354 1.326548 GTATGGGCGAAACAACTAGCG 59.673 52.381 0.00 0.00 0.00 4.26
3649 4359 3.345087 CGAAACAACTAGCGCACAC 57.655 52.632 11.47 0.00 0.00 3.82
3650 4360 0.579630 CGAAACAACTAGCGCACACA 59.420 50.000 11.47 0.00 0.00 3.72
3651 4361 1.656429 CGAAACAACTAGCGCACACAC 60.656 52.381 11.47 0.00 0.00 3.82
3652 4362 0.303493 AAACAACTAGCGCACACACG 59.697 50.000 11.47 0.00 0.00 4.49
3660 4370 3.022287 CGCACACACGCCTCTTTT 58.978 55.556 0.00 0.00 0.00 2.27
3661 4371 1.355210 CGCACACACGCCTCTTTTT 59.645 52.632 0.00 0.00 0.00 1.94
3678 4388 2.943036 TTTTTACTTGCGGTCCCTCT 57.057 45.000 0.00 0.00 0.00 3.69
3679 4389 2.467566 TTTTACTTGCGGTCCCTCTC 57.532 50.000 0.00 0.00 0.00 3.20
3680 4390 1.344065 TTTACTTGCGGTCCCTCTCA 58.656 50.000 0.00 0.00 0.00 3.27
3681 4391 0.606604 TTACTTGCGGTCCCTCTCAC 59.393 55.000 0.00 0.00 0.00 3.51
3682 4392 0.541063 TACTTGCGGTCCCTCTCACA 60.541 55.000 0.00 0.00 0.00 3.58
3683 4393 1.374758 CTTGCGGTCCCTCTCACAC 60.375 63.158 0.00 0.00 0.00 3.82
3684 4394 3.220999 TTGCGGTCCCTCTCACACG 62.221 63.158 0.00 0.00 0.00 4.49
3686 4396 4.436998 CGGTCCCTCTCACACGCC 62.437 72.222 0.00 0.00 0.00 5.68
3687 4397 2.997897 GGTCCCTCTCACACGCCT 60.998 66.667 0.00 0.00 0.00 5.52
3688 4398 1.681327 GGTCCCTCTCACACGCCTA 60.681 63.158 0.00 0.00 0.00 3.93
3689 4399 1.511768 GTCCCTCTCACACGCCTAC 59.488 63.158 0.00 0.00 0.00 3.18
3704 4414 0.109319 CCTACGTGTGGGCAAAATGC 60.109 55.000 0.00 0.00 44.08 3.56
3714 4424 3.432517 GCAAAATGCATAACGCCCA 57.567 47.368 0.00 0.00 44.26 5.36
3715 4425 0.998669 GCAAAATGCATAACGCCCAC 59.001 50.000 0.00 0.00 44.26 4.61
3716 4426 1.671261 GCAAAATGCATAACGCCCACA 60.671 47.619 0.00 0.00 44.26 4.17
3717 4427 2.891112 CAAAATGCATAACGCCCACAT 58.109 42.857 0.00 0.00 41.33 3.21
3718 4428 2.582728 AAATGCATAACGCCCACATG 57.417 45.000 0.00 0.00 41.33 3.21
3719 4429 1.761449 AATGCATAACGCCCACATGA 58.239 45.000 0.00 0.00 41.33 3.07
3720 4430 1.024271 ATGCATAACGCCCACATGAC 58.976 50.000 0.00 0.00 41.33 3.06
3721 4431 1.029408 TGCATAACGCCCACATGACC 61.029 55.000 0.00 0.00 41.33 4.02
3722 4432 0.748005 GCATAACGCCCACATGACCT 60.748 55.000 0.00 0.00 32.94 3.85
3723 4433 1.299541 CATAACGCCCACATGACCTC 58.700 55.000 0.00 0.00 0.00 3.85
3724 4434 1.134401 CATAACGCCCACATGACCTCT 60.134 52.381 0.00 0.00 0.00 3.69
3725 4435 0.535335 TAACGCCCACATGACCTCTC 59.465 55.000 0.00 0.00 0.00 3.20
3726 4436 1.194781 AACGCCCACATGACCTCTCT 61.195 55.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 241 4.974645 ACAAGGACAAAGGTACAGATCA 57.025 40.909 0.00 0.00 0.00 2.92
223 252 4.481368 ACGCATAGGATACAAGGACAAA 57.519 40.909 0.00 0.00 41.41 2.83
228 257 3.181465 ACCAGAACGCATAGGATACAAGG 60.181 47.826 0.00 0.00 41.41 3.61
288 330 6.959639 AATTACAGAAGAAACTTTGCCAGA 57.040 33.333 0.00 0.00 0.00 3.86
416 528 7.725844 TCTCCTTTATGCTTTCCTTTTTCTCTT 59.274 33.333 0.00 0.00 0.00 2.85
431 543 7.012421 ACGGAGTTATTGATTTCTCCTTTATGC 59.988 37.037 8.16 0.00 37.78 3.14
498 614 6.128795 GCAGTTGAAATGTCACACTACTCTAC 60.129 42.308 0.00 0.00 31.90 2.59
500 616 4.752101 GCAGTTGAAATGTCACACTACTCT 59.248 41.667 0.00 0.00 31.90 3.24
624 740 1.153647 CTTGGACGATGCGGCTACA 60.154 57.895 0.00 0.00 34.07 2.74
625 741 1.883084 CCTTGGACGATGCGGCTAC 60.883 63.158 0.00 0.00 34.07 3.58
637 759 0.616395 TGCCGTGTCCTATCCTTGGA 60.616 55.000 0.00 0.00 0.00 3.53
639 761 1.369625 GTTGCCGTGTCCTATCCTTG 58.630 55.000 0.00 0.00 0.00 3.61
640 762 0.108329 CGTTGCCGTGTCCTATCCTT 60.108 55.000 0.00 0.00 0.00 3.36
643 765 2.171725 GGCGTTGCCGTGTCCTATC 61.172 63.158 0.00 0.00 39.62 2.08
711 1153 5.733373 GCCGATTAAAGATGCGGAAATTCTT 60.733 40.000 0.00 0.00 46.29 2.52
713 1155 3.975035 GCCGATTAAAGATGCGGAAATTC 59.025 43.478 0.00 0.00 46.29 2.17
816 1260 2.809601 CTTCCGAGGCGTTGACGG 60.810 66.667 5.62 0.00 46.71 4.79
817 1261 1.801913 CTCTTCCGAGGCGTTGACG 60.802 63.158 0.00 0.00 43.27 4.35
818 1262 2.095252 GCTCTTCCGAGGCGTTGAC 61.095 63.158 0.00 0.00 37.75 3.18
819 1263 2.261671 GCTCTTCCGAGGCGTTGA 59.738 61.111 0.00 0.00 37.75 3.18
820 1264 3.181967 CGCTCTTCCGAGGCGTTG 61.182 66.667 0.00 0.00 37.75 4.10
862 1306 1.951424 GCGTGCCTGGGGTTAATACAA 60.951 52.381 0.00 0.00 0.00 2.41
896 1351 0.978907 GGGTGAAAGGACTCGGGTTA 59.021 55.000 0.00 0.00 0.00 2.85
910 1365 1.277273 CTGAGATTCTGTGCAGGGTGA 59.723 52.381 0.00 0.00 0.00 4.02
1092 1558 3.736482 CTCGGTCTCGTAGTGCGCC 62.736 68.421 4.18 0.00 41.07 6.53
1275 1741 3.349176 CAAGCGAAATCGAAATCTGAGC 58.651 45.455 7.06 0.00 43.02 4.26
1280 1746 4.271049 TGAGATCCAAGCGAAATCGAAATC 59.729 41.667 7.06 1.97 43.02 2.17
1281 1747 4.191544 TGAGATCCAAGCGAAATCGAAAT 58.808 39.130 7.06 0.00 43.02 2.17
1282 1748 3.595173 TGAGATCCAAGCGAAATCGAAA 58.405 40.909 7.06 0.00 43.02 3.46
1283 1749 3.245518 TGAGATCCAAGCGAAATCGAA 57.754 42.857 7.06 0.00 43.02 3.71
1284 1750 2.959507 TGAGATCCAAGCGAAATCGA 57.040 45.000 7.06 0.00 43.02 3.59
1285 1751 3.126073 TCATGAGATCCAAGCGAAATCG 58.874 45.455 0.00 0.00 43.27 3.34
1353 1819 6.943718 AGACAGGATAGCTGTAATACTCCTAC 59.056 42.308 0.00 0.00 34.88 3.18
1357 1823 6.263392 TCACAGACAGGATAGCTGTAATACTC 59.737 42.308 0.00 0.00 40.63 2.59
1372 1838 2.237143 TCAGGCCTTAATCACAGACAGG 59.763 50.000 0.00 0.00 0.00 4.00
1377 1843 3.507233 TGCTTTTCAGGCCTTAATCACAG 59.493 43.478 0.00 0.00 0.00 3.66
1392 1862 2.743664 GGCAATTGGTTCCATGCTTTTC 59.256 45.455 7.72 0.00 38.79 2.29
1397 1867 2.406596 ATTGGCAATTGGTTCCATGC 57.593 45.000 6.96 8.42 38.06 4.06
1412 1882 0.319727 TTGCTTCAGCGGCAAATTGG 60.320 50.000 1.45 0.00 45.05 3.16
1470 1948 8.362464 TGGTCCCATGTAGTATTATCATCTAC 57.638 38.462 0.00 0.00 35.86 2.59
1504 1993 1.272490 TCAAGCGGTCAGTTGGAGTAG 59.728 52.381 0.00 0.00 0.00 2.57
1532 2026 2.239654 CCCATTTCACTCCTTCCTAGCA 59.760 50.000 0.00 0.00 0.00 3.49
1638 2174 1.202359 CCACGTTTGTTGGAACTTGGG 60.202 52.381 5.62 0.00 42.23 4.12
1662 2198 3.134623 AGATCAGTGTGGTGTGTGAGAAA 59.865 43.478 0.00 0.00 0.00 2.52
1844 2401 1.202510 GCACTTGCAATGTTGGGTTCA 60.203 47.619 0.00 0.00 41.59 3.18
1867 2424 1.225637 GTTACACGATGGCGCAACG 60.226 57.895 10.83 14.06 42.48 4.10
1912 2469 0.712380 AATTCCTGTCAGGGGCCATT 59.288 50.000 19.11 9.33 35.59 3.16
1919 2476 4.630069 CGTGGTTAAGTAATTCCTGTCAGG 59.370 45.833 13.21 13.21 36.46 3.86
2286 2846 0.997226 CGGTCACTCACTTCGTCGTG 60.997 60.000 0.00 1.32 36.25 4.35
2289 2849 1.068472 ACATCGGTCACTCACTTCGTC 60.068 52.381 0.00 0.00 0.00 4.20
2313 2883 1.338020 GTTCACCTCCACCTGCAAAAG 59.662 52.381 0.00 0.00 0.00 2.27
2351 2921 0.767375 TGCAGAACTCCCTCAGCTTT 59.233 50.000 0.00 0.00 0.00 3.51
2750 3320 4.710695 CACACACGTAGCGCCGGA 62.711 66.667 5.05 0.00 0.00 5.14
2767 3337 2.048603 GCCAAGGATGACACCCAGC 61.049 63.158 0.00 0.00 0.00 4.85
2770 3340 1.039233 CATGGCCAAGGATGACACCC 61.039 60.000 10.96 0.00 0.00 4.61
2792 3379 4.483243 CCCCCGATCAACCACCCG 62.483 72.222 0.00 0.00 0.00 5.28
2876 3474 6.482308 TCTTAATAACTCTCCTTAAATGCGGC 59.518 38.462 0.00 0.00 0.00 6.53
2896 3494 6.012745 TGATGAGATGATCCCGATCTCTTAA 58.987 40.000 17.70 6.70 44.28 1.85
2905 3503 7.254692 GCATAATAACATGATGAGATGATCCCG 60.255 40.741 0.00 0.00 0.00 5.14
2980 3578 9.877178 CCTCTCTTTATTTACATACACACTTCT 57.123 33.333 0.00 0.00 0.00 2.85
2981 3579 8.604890 GCCTCTCTTTATTTACATACACACTTC 58.395 37.037 0.00 0.00 0.00 3.01
2982 3580 8.100791 TGCCTCTCTTTATTTACATACACACTT 58.899 33.333 0.00 0.00 0.00 3.16
2983 3581 7.620880 TGCCTCTCTTTATTTACATACACACT 58.379 34.615 0.00 0.00 0.00 3.55
2984 3582 7.466050 GCTGCCTCTCTTTATTTACATACACAC 60.466 40.741 0.00 0.00 0.00 3.82
2985 3583 6.538742 GCTGCCTCTCTTTATTTACATACACA 59.461 38.462 0.00 0.00 0.00 3.72
2986 3584 6.292381 CGCTGCCTCTCTTTATTTACATACAC 60.292 42.308 0.00 0.00 0.00 2.90
2987 3585 5.753438 CGCTGCCTCTCTTTATTTACATACA 59.247 40.000 0.00 0.00 0.00 2.29
2988 3586 5.177696 CCGCTGCCTCTCTTTATTTACATAC 59.822 44.000 0.00 0.00 0.00 2.39
2989 3587 5.297547 CCGCTGCCTCTCTTTATTTACATA 58.702 41.667 0.00 0.00 0.00 2.29
2990 3588 4.130118 CCGCTGCCTCTCTTTATTTACAT 58.870 43.478 0.00 0.00 0.00 2.29
2991 3589 3.531538 CCGCTGCCTCTCTTTATTTACA 58.468 45.455 0.00 0.00 0.00 2.41
2992 3590 2.288186 GCCGCTGCCTCTCTTTATTTAC 59.712 50.000 0.00 0.00 0.00 2.01
3018 3616 2.575532 CATACGGCCCATGATGAAACT 58.424 47.619 6.17 0.00 0.00 2.66
3152 3800 7.524717 AGAGCTACCATTTTTCTAAAAGCAA 57.475 32.000 0.00 0.00 29.71 3.91
3153 3801 7.370383 CAAGAGCTACCATTTTTCTAAAAGCA 58.630 34.615 0.00 0.00 29.71 3.91
3155 3803 7.803079 GCAAGAGCTACCATTTTTCTAAAAG 57.197 36.000 0.00 0.00 37.91 2.27
3186 3868 3.755628 TCGTGCTAGTCACCCGGC 61.756 66.667 0.00 0.00 42.69 6.13
3187 3869 2.181021 GTCGTGCTAGTCACCCGG 59.819 66.667 0.00 0.00 42.69 5.73
3232 3914 2.033801 ACACACTTGACGTACGTTAGCT 59.966 45.455 23.70 10.55 0.00 3.32
3234 3916 3.620761 TCACACACTTGACGTACGTTAG 58.379 45.455 23.70 22.84 0.00 2.34
3298 3980 5.191426 TGGGTAGTACTTGCAGACTAGTAG 58.809 45.833 0.00 0.00 35.27 2.57
3299 3981 5.183530 TGGGTAGTACTTGCAGACTAGTA 57.816 43.478 0.00 0.00 33.72 1.82
3300 3982 4.043608 TGGGTAGTACTTGCAGACTAGT 57.956 45.455 0.00 0.00 35.90 2.57
3310 4020 1.211212 GGGCCGAAATGGGTAGTACTT 59.789 52.381 0.00 0.00 38.63 2.24
3312 4022 0.179037 GGGGCCGAAATGGGTAGTAC 60.179 60.000 0.00 0.00 38.63 2.73
3329 4039 0.179000 AGCAGCGGAGTATTTCAGGG 59.821 55.000 0.00 0.00 0.00 4.45
3346 4056 4.142600 GGACTAACAAACATGGACATCAGC 60.143 45.833 0.00 0.00 0.00 4.26
3360 4070 4.282449 TCTCGGAATGTTCAGGACTAACAA 59.718 41.667 0.00 0.00 40.05 2.83
3368 4078 4.759782 AGTACATTCTCGGAATGTTCAGG 58.240 43.478 26.45 7.37 40.87 3.86
3376 4086 6.244552 TCCTAGTAGAGTACATTCTCGGAA 57.755 41.667 0.00 0.00 39.21 4.30
3386 4096 5.565045 CGCATCCCAAATCCTAGTAGAGTAC 60.565 48.000 0.00 0.00 0.00 2.73
3387 4097 4.523173 CGCATCCCAAATCCTAGTAGAGTA 59.477 45.833 0.00 0.00 0.00 2.59
3388 4098 3.322254 CGCATCCCAAATCCTAGTAGAGT 59.678 47.826 0.00 0.00 0.00 3.24
3389 4099 3.574396 TCGCATCCCAAATCCTAGTAGAG 59.426 47.826 0.00 0.00 0.00 2.43
3390 4100 3.572642 TCGCATCCCAAATCCTAGTAGA 58.427 45.455 0.00 0.00 0.00 2.59
3391 4101 4.021104 TGATCGCATCCCAAATCCTAGTAG 60.021 45.833 0.00 0.00 0.00 2.57
3392 4102 3.901222 TGATCGCATCCCAAATCCTAGTA 59.099 43.478 0.00 0.00 0.00 1.82
3393 4103 2.705658 TGATCGCATCCCAAATCCTAGT 59.294 45.455 0.00 0.00 0.00 2.57
3394 4104 3.407424 TGATCGCATCCCAAATCCTAG 57.593 47.619 0.00 0.00 0.00 3.02
3395 4105 3.855255 TTGATCGCATCCCAAATCCTA 57.145 42.857 0.00 0.00 0.00 2.94
3396 4106 2.734755 TTGATCGCATCCCAAATCCT 57.265 45.000 0.00 0.00 0.00 3.24
3397 4107 2.608752 GCATTGATCGCATCCCAAATCC 60.609 50.000 0.00 0.00 0.00 3.01
3398 4108 2.034939 TGCATTGATCGCATCCCAAATC 59.965 45.455 0.00 0.00 33.55 2.17
3399 4109 2.033372 TGCATTGATCGCATCCCAAAT 58.967 42.857 0.00 0.00 33.55 2.32
3400 4110 1.472188 TGCATTGATCGCATCCCAAA 58.528 45.000 0.00 0.00 33.55 3.28
3401 4111 3.187955 TGCATTGATCGCATCCCAA 57.812 47.368 0.00 0.00 33.55 4.12
3402 4112 4.981924 TGCATTGATCGCATCCCA 57.018 50.000 0.00 0.00 33.55 4.37
3407 4117 1.730451 CCAGCCATGCATTGATCGCA 61.730 55.000 1.13 0.00 44.94 5.10
3408 4118 1.007734 CCAGCCATGCATTGATCGC 60.008 57.895 1.13 0.00 0.00 4.58
3409 4119 1.658114 CCCAGCCATGCATTGATCG 59.342 57.895 1.13 0.00 0.00 3.69
3410 4120 0.468585 TCCCCAGCCATGCATTGATC 60.469 55.000 1.13 0.00 0.00 2.92
3411 4121 0.190069 ATCCCCAGCCATGCATTGAT 59.810 50.000 1.13 0.00 0.00 2.57
3412 4122 0.757561 CATCCCCAGCCATGCATTGA 60.758 55.000 1.13 0.00 0.00 2.57
3413 4123 1.745890 CATCCCCAGCCATGCATTG 59.254 57.895 0.00 0.00 0.00 2.82
3414 4124 2.138179 GCATCCCCAGCCATGCATT 61.138 57.895 0.00 0.00 44.18 3.56
3415 4125 2.523412 GCATCCCCAGCCATGCAT 60.523 61.111 0.00 0.00 44.18 3.96
3417 4127 2.095978 GATTGCATCCCCAGCCATGC 62.096 60.000 0.00 0.00 44.87 4.06
3418 4128 0.469331 AGATTGCATCCCCAGCCATG 60.469 55.000 0.00 0.00 0.00 3.66
3419 4129 0.178970 GAGATTGCATCCCCAGCCAT 60.179 55.000 0.00 0.00 0.00 4.40
3420 4130 1.228228 GAGATTGCATCCCCAGCCA 59.772 57.895 0.00 0.00 0.00 4.75
3421 4131 0.822532 CTGAGATTGCATCCCCAGCC 60.823 60.000 0.00 0.00 0.00 4.85
3422 4132 0.822532 CCTGAGATTGCATCCCCAGC 60.823 60.000 0.00 0.00 32.47 4.85
3423 4133 0.549950 ACCTGAGATTGCATCCCCAG 59.450 55.000 0.00 0.00 33.15 4.45
3424 4134 0.548031 GACCTGAGATTGCATCCCCA 59.452 55.000 0.00 0.00 0.00 4.96
3425 4135 0.548031 TGACCTGAGATTGCATCCCC 59.452 55.000 0.00 0.00 0.00 4.81
3426 4136 1.211457 ACTGACCTGAGATTGCATCCC 59.789 52.381 0.00 0.00 0.00 3.85
3427 4137 2.706339 ACTGACCTGAGATTGCATCC 57.294 50.000 0.00 0.00 0.00 3.51
3428 4138 2.941720 GGAACTGACCTGAGATTGCATC 59.058 50.000 0.00 0.00 0.00 3.91
3429 4139 2.575279 AGGAACTGACCTGAGATTGCAT 59.425 45.455 0.00 0.00 39.01 3.96
3430 4140 1.980765 AGGAACTGACCTGAGATTGCA 59.019 47.619 0.00 0.00 39.01 4.08
3431 4141 2.777832 AGGAACTGACCTGAGATTGC 57.222 50.000 0.00 0.00 39.01 3.56
3444 4154 1.545706 GGAAGAGCGGACCAGGAACT 61.546 60.000 0.00 0.00 43.88 3.01
3445 4155 1.079057 GGAAGAGCGGACCAGGAAC 60.079 63.158 0.00 0.00 0.00 3.62
3446 4156 0.909610 ATGGAAGAGCGGACCAGGAA 60.910 55.000 0.00 0.00 37.12 3.36
3447 4157 1.306141 ATGGAAGAGCGGACCAGGA 60.306 57.895 0.00 0.00 37.12 3.86
3448 4158 1.144936 GATGGAAGAGCGGACCAGG 59.855 63.158 0.00 0.00 37.12 4.45
3449 4159 1.227089 CGATGGAAGAGCGGACCAG 60.227 63.158 0.00 0.00 37.12 4.00
3450 4160 2.892640 CGATGGAAGAGCGGACCA 59.107 61.111 0.00 0.00 38.09 4.02
3463 4173 2.668212 ACCACGTTGCCACCGATG 60.668 61.111 0.00 0.00 0.00 3.84
3464 4174 2.668212 CACCACGTTGCCACCGAT 60.668 61.111 0.00 0.00 0.00 4.18
3465 4175 4.920112 CCACCACGTTGCCACCGA 62.920 66.667 0.00 0.00 0.00 4.69
3466 4176 4.920112 TCCACCACGTTGCCACCG 62.920 66.667 0.00 0.00 0.00 4.94
3467 4177 2.517402 TTCCACCACGTTGCCACC 60.517 61.111 0.00 0.00 0.00 4.61
3468 4178 2.719354 GTTCCACCACGTTGCCAC 59.281 61.111 0.00 0.00 0.00 5.01
3469 4179 2.897846 CGTTCCACCACGTTGCCA 60.898 61.111 0.00 0.00 35.34 4.92
3470 4180 3.656045 CCGTTCCACCACGTTGCC 61.656 66.667 0.00 0.00 38.57 4.52
3471 4181 2.589442 TCCGTTCCACCACGTTGC 60.589 61.111 0.00 0.00 38.57 4.17
3472 4182 0.882927 ATGTCCGTTCCACCACGTTG 60.883 55.000 0.00 0.00 38.57 4.10
3473 4183 0.882927 CATGTCCGTTCCACCACGTT 60.883 55.000 0.00 0.00 38.57 3.99
3474 4184 1.301401 CATGTCCGTTCCACCACGT 60.301 57.895 0.00 0.00 38.57 4.49
3475 4185 2.032634 CCATGTCCGTTCCACCACG 61.033 63.158 0.00 0.00 40.02 4.94
3476 4186 1.072505 ACCATGTCCGTTCCACCAC 59.927 57.895 0.00 0.00 0.00 4.16
3477 4187 1.072332 CACCATGTCCGTTCCACCA 59.928 57.895 0.00 0.00 0.00 4.17
3478 4188 1.674322 CCACCATGTCCGTTCCACC 60.674 63.158 0.00 0.00 0.00 4.61
3479 4189 1.674322 CCCACCATGTCCGTTCCAC 60.674 63.158 0.00 0.00 0.00 4.02
3480 4190 1.204786 ATCCCACCATGTCCGTTCCA 61.205 55.000 0.00 0.00 0.00 3.53
3481 4191 0.748005 CATCCCACCATGTCCGTTCC 60.748 60.000 0.00 0.00 0.00 3.62
3482 4192 0.748005 CCATCCCACCATGTCCGTTC 60.748 60.000 0.00 0.00 0.00 3.95
3483 4193 1.302949 CCATCCCACCATGTCCGTT 59.697 57.895 0.00 0.00 0.00 4.44
3484 4194 1.923395 ACCATCCCACCATGTCCGT 60.923 57.895 0.00 0.00 0.00 4.69
3485 4195 1.451927 CACCATCCCACCATGTCCG 60.452 63.158 0.00 0.00 0.00 4.79
3486 4196 1.076777 CCACCATCCCACCATGTCC 60.077 63.158 0.00 0.00 0.00 4.02
3487 4197 1.076777 CCCACCATCCCACCATGTC 60.077 63.158 0.00 0.00 0.00 3.06
3488 4198 1.543642 TCCCACCATCCCACCATGT 60.544 57.895 0.00 0.00 0.00 3.21
3489 4199 1.228228 CTCCCACCATCCCACCATG 59.772 63.158 0.00 0.00 0.00 3.66
3490 4200 1.230281 ACTCCCACCATCCCACCAT 60.230 57.895 0.00 0.00 0.00 3.55
3491 4201 1.923395 GACTCCCACCATCCCACCA 60.923 63.158 0.00 0.00 0.00 4.17
3492 4202 1.497309 TTGACTCCCACCATCCCACC 61.497 60.000 0.00 0.00 0.00 4.61
3493 4203 0.322546 GTTGACTCCCACCATCCCAC 60.323 60.000 0.00 0.00 0.00 4.61
3494 4204 0.770166 TGTTGACTCCCACCATCCCA 60.770 55.000 0.00 0.00 0.00 4.37
3495 4205 0.035056 CTGTTGACTCCCACCATCCC 60.035 60.000 0.00 0.00 0.00 3.85
3496 4206 0.035056 CCTGTTGACTCCCACCATCC 60.035 60.000 0.00 0.00 0.00 3.51
3497 4207 0.984230 TCCTGTTGACTCCCACCATC 59.016 55.000 0.00 0.00 0.00 3.51
3498 4208 1.444933 TTCCTGTTGACTCCCACCAT 58.555 50.000 0.00 0.00 0.00 3.55
3499 4209 1.073763 CATTCCTGTTGACTCCCACCA 59.926 52.381 0.00 0.00 0.00 4.17
3500 4210 1.826385 CATTCCTGTTGACTCCCACC 58.174 55.000 0.00 0.00 0.00 4.61
3501 4211 1.168714 GCATTCCTGTTGACTCCCAC 58.831 55.000 0.00 0.00 0.00 4.61
3502 4212 0.038166 GGCATTCCTGTTGACTCCCA 59.962 55.000 0.00 0.00 0.00 4.37
3503 4213 0.329596 AGGCATTCCTGTTGACTCCC 59.670 55.000 0.00 0.00 42.34 4.30
3504 4214 3.567478 ATAGGCATTCCTGTTGACTCC 57.433 47.619 0.00 0.00 44.08 3.85
3505 4215 6.995091 AGAATTATAGGCATTCCTGTTGACTC 59.005 38.462 0.00 0.00 44.08 3.36
3506 4216 6.904626 AGAATTATAGGCATTCCTGTTGACT 58.095 36.000 0.00 0.00 44.08 3.41
3507 4217 7.573968 AAGAATTATAGGCATTCCTGTTGAC 57.426 36.000 0.00 0.00 44.08 3.18
3508 4218 7.833682 TCAAAGAATTATAGGCATTCCTGTTGA 59.166 33.333 0.00 0.00 44.08 3.18
3509 4219 7.999679 TCAAAGAATTATAGGCATTCCTGTTG 58.000 34.615 0.00 0.00 44.08 3.33
3510 4220 7.286316 CCTCAAAGAATTATAGGCATTCCTGTT 59.714 37.037 0.00 0.00 44.08 3.16
3511 4221 6.774656 CCTCAAAGAATTATAGGCATTCCTGT 59.225 38.462 0.00 0.00 44.08 4.00
3512 4222 7.000472 TCCTCAAAGAATTATAGGCATTCCTG 59.000 38.462 0.00 0.00 44.08 3.86
3513 4223 7.001073 GTCCTCAAAGAATTATAGGCATTCCT 58.999 38.462 0.00 0.00 46.57 3.36
3514 4224 6.073003 CGTCCTCAAAGAATTATAGGCATTCC 60.073 42.308 0.00 0.00 31.86 3.01
3515 4225 6.706270 TCGTCCTCAAAGAATTATAGGCATTC 59.294 38.462 0.00 0.00 0.00 2.67
3516 4226 6.483640 GTCGTCCTCAAAGAATTATAGGCATT 59.516 38.462 0.00 0.00 0.00 3.56
3517 4227 5.992217 GTCGTCCTCAAAGAATTATAGGCAT 59.008 40.000 0.00 0.00 0.00 4.40
3518 4228 5.357257 GTCGTCCTCAAAGAATTATAGGCA 58.643 41.667 0.00 0.00 0.00 4.75
3519 4229 4.444720 CGTCGTCCTCAAAGAATTATAGGC 59.555 45.833 0.00 0.00 0.00 3.93
3520 4230 5.828747 TCGTCGTCCTCAAAGAATTATAGG 58.171 41.667 0.00 0.00 0.00 2.57
3521 4231 8.903723 GTTATCGTCGTCCTCAAAGAATTATAG 58.096 37.037 0.00 0.00 0.00 1.31
3522 4232 8.627403 AGTTATCGTCGTCCTCAAAGAATTATA 58.373 33.333 0.00 0.00 0.00 0.98
3523 4233 7.435488 CAGTTATCGTCGTCCTCAAAGAATTAT 59.565 37.037 0.00 0.00 0.00 1.28
3524 4234 6.750501 CAGTTATCGTCGTCCTCAAAGAATTA 59.249 38.462 0.00 0.00 0.00 1.40
3525 4235 5.577164 CAGTTATCGTCGTCCTCAAAGAATT 59.423 40.000 0.00 0.00 0.00 2.17
3526 4236 5.103000 CAGTTATCGTCGTCCTCAAAGAAT 58.897 41.667 0.00 0.00 0.00 2.40
3527 4237 4.482386 CAGTTATCGTCGTCCTCAAAGAA 58.518 43.478 0.00 0.00 0.00 2.52
3528 4238 3.672511 GCAGTTATCGTCGTCCTCAAAGA 60.673 47.826 0.00 0.00 0.00 2.52
3529 4239 2.599082 GCAGTTATCGTCGTCCTCAAAG 59.401 50.000 0.00 0.00 0.00 2.77
3530 4240 2.602878 GCAGTTATCGTCGTCCTCAAA 58.397 47.619 0.00 0.00 0.00 2.69
3531 4241 1.135199 GGCAGTTATCGTCGTCCTCAA 60.135 52.381 0.00 0.00 0.00 3.02
3532 4242 0.454600 GGCAGTTATCGTCGTCCTCA 59.545 55.000 0.00 0.00 0.00 3.86
3533 4243 0.454600 TGGCAGTTATCGTCGTCCTC 59.545 55.000 0.00 0.00 0.00 3.71
3534 4244 0.172803 GTGGCAGTTATCGTCGTCCT 59.827 55.000 0.00 0.00 0.00 3.85
3535 4245 0.108992 TGTGGCAGTTATCGTCGTCC 60.109 55.000 0.00 0.00 0.00 4.79
3536 4246 0.989890 GTGTGGCAGTTATCGTCGTC 59.010 55.000 0.00 0.00 0.00 4.20
3537 4247 0.731514 CGTGTGGCAGTTATCGTCGT 60.732 55.000 0.00 0.00 0.00 4.34
3538 4248 0.731514 ACGTGTGGCAGTTATCGTCG 60.732 55.000 0.00 0.00 0.00 5.12
3539 4249 0.713883 CACGTGTGGCAGTTATCGTC 59.286 55.000 7.58 0.00 0.00 4.20
3540 4250 0.032952 ACACGTGTGGCAGTTATCGT 59.967 50.000 22.71 0.00 34.19 3.73
3541 4251 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
3555 4265 2.744709 CCCCTTAACGCCCACACG 60.745 66.667 0.00 0.00 39.50 4.49
3556 4266 1.673337 GACCCCTTAACGCCCACAC 60.673 63.158 0.00 0.00 0.00 3.82
3557 4267 1.844289 AGACCCCTTAACGCCCACA 60.844 57.895 0.00 0.00 0.00 4.17
3558 4268 1.376812 CAGACCCCTTAACGCCCAC 60.377 63.158 0.00 0.00 0.00 4.61
3559 4269 3.074281 CAGACCCCTTAACGCCCA 58.926 61.111 0.00 0.00 0.00 5.36
3560 4270 2.437895 GCAGACCCCTTAACGCCC 60.438 66.667 0.00 0.00 0.00 6.13
3561 4271 2.038837 GTGCAGACCCCTTAACGCC 61.039 63.158 0.00 0.00 0.00 5.68
3562 4272 0.676782 ATGTGCAGACCCCTTAACGC 60.677 55.000 0.00 0.00 0.00 4.84
3563 4273 2.684001 TATGTGCAGACCCCTTAACG 57.316 50.000 0.00 0.00 0.00 3.18
3564 4274 3.886123 ACATATGTGCAGACCCCTTAAC 58.114 45.455 7.78 0.00 0.00 2.01
3565 4275 4.584638 AACATATGTGCAGACCCCTTAA 57.415 40.909 9.63 0.00 0.00 1.85
3566 4276 4.584638 AAACATATGTGCAGACCCCTTA 57.415 40.909 9.63 0.00 0.00 2.69
3567 4277 3.456380 AAACATATGTGCAGACCCCTT 57.544 42.857 9.63 0.00 0.00 3.95
3568 4278 3.091545 CAAAACATATGTGCAGACCCCT 58.908 45.455 9.63 0.00 0.00 4.79
3569 4279 2.825532 ACAAAACATATGTGCAGACCCC 59.174 45.455 9.63 0.00 0.00 4.95
3570 4280 3.836949 CACAAAACATATGTGCAGACCC 58.163 45.455 9.63 0.00 41.42 4.46
3578 4288 6.995686 TCTTAGACACCACACAAAACATATGT 59.004 34.615 1.41 1.41 0.00 2.29
3579 4289 7.361201 CCTCTTAGACACCACACAAAACATATG 60.361 40.741 0.00 0.00 0.00 1.78
3580 4290 6.655003 CCTCTTAGACACCACACAAAACATAT 59.345 38.462 0.00 0.00 0.00 1.78
3581 4291 5.995282 CCTCTTAGACACCACACAAAACATA 59.005 40.000 0.00 0.00 0.00 2.29
3582 4292 4.821805 CCTCTTAGACACCACACAAAACAT 59.178 41.667 0.00 0.00 0.00 2.71
3583 4293 4.080807 TCCTCTTAGACACCACACAAAACA 60.081 41.667 0.00 0.00 0.00 2.83
3584 4294 4.272748 GTCCTCTTAGACACCACACAAAAC 59.727 45.833 0.00 0.00 36.73 2.43
3585 4295 4.448210 GTCCTCTTAGACACCACACAAAA 58.552 43.478 0.00 0.00 36.73 2.44
3586 4296 3.181458 GGTCCTCTTAGACACCACACAAA 60.181 47.826 1.70 0.00 38.59 2.83
3587 4297 2.367567 GGTCCTCTTAGACACCACACAA 59.632 50.000 1.70 0.00 38.59 3.33
3588 4298 1.968493 GGTCCTCTTAGACACCACACA 59.032 52.381 1.70 0.00 38.59 3.72
3589 4299 1.968493 TGGTCCTCTTAGACACCACAC 59.032 52.381 4.60 0.00 38.59 3.82
3590 4300 2.248248 CTGGTCCTCTTAGACACCACA 58.752 52.381 4.60 0.00 38.59 4.17
3591 4301 2.249139 ACTGGTCCTCTTAGACACCAC 58.751 52.381 4.60 0.00 38.59 4.16
3592 4302 2.696526 ACTGGTCCTCTTAGACACCA 57.303 50.000 7.77 7.77 38.59 4.17
3593 4303 2.897969 TGAACTGGTCCTCTTAGACACC 59.102 50.000 0.00 0.00 38.59 4.16
3594 4304 3.321111 TGTGAACTGGTCCTCTTAGACAC 59.679 47.826 0.00 0.00 38.59 3.67
3595 4305 3.321111 GTGTGAACTGGTCCTCTTAGACA 59.679 47.826 0.00 0.00 38.59 3.41
3596 4306 3.612004 CGTGTGAACTGGTCCTCTTAGAC 60.612 52.174 0.00 0.00 35.95 2.59
3597 4307 2.557056 CGTGTGAACTGGTCCTCTTAGA 59.443 50.000 0.00 0.00 0.00 2.10
3598 4308 2.296471 ACGTGTGAACTGGTCCTCTTAG 59.704 50.000 0.00 0.00 0.00 2.18
3599 4309 2.295349 GACGTGTGAACTGGTCCTCTTA 59.705 50.000 0.00 0.00 0.00 2.10
3600 4310 1.068741 GACGTGTGAACTGGTCCTCTT 59.931 52.381 0.00 0.00 0.00 2.85
3601 4311 0.674534 GACGTGTGAACTGGTCCTCT 59.325 55.000 0.00 0.00 0.00 3.69
3602 4312 0.674534 AGACGTGTGAACTGGTCCTC 59.325 55.000 0.00 0.00 0.00 3.71
3603 4313 1.991121 TAGACGTGTGAACTGGTCCT 58.009 50.000 0.00 0.00 0.00 3.85
3604 4314 2.029290 ACATAGACGTGTGAACTGGTCC 60.029 50.000 0.00 0.00 0.00 4.46
3605 4315 3.299340 ACATAGACGTGTGAACTGGTC 57.701 47.619 0.00 0.00 0.00 4.02
3606 4316 4.381612 CCATACATAGACGTGTGAACTGGT 60.382 45.833 0.00 0.00 33.62 4.00
3607 4317 4.112634 CCATACATAGACGTGTGAACTGG 58.887 47.826 0.00 0.00 33.62 4.00
3608 4318 4.112634 CCCATACATAGACGTGTGAACTG 58.887 47.826 0.00 0.00 33.62 3.16
3609 4319 3.430374 GCCCATACATAGACGTGTGAACT 60.430 47.826 0.00 0.00 33.62 3.01
3610 4320 2.864343 GCCCATACATAGACGTGTGAAC 59.136 50.000 0.00 0.00 33.62 3.18
3611 4321 2.480587 CGCCCATACATAGACGTGTGAA 60.481 50.000 0.00 0.00 33.62 3.18
3612 4322 1.066454 CGCCCATACATAGACGTGTGA 59.934 52.381 0.00 0.00 33.62 3.58
3613 4323 1.066454 TCGCCCATACATAGACGTGTG 59.934 52.381 0.00 0.00 33.62 3.82
3614 4324 1.395635 TCGCCCATACATAGACGTGT 58.604 50.000 0.00 0.00 36.13 4.49
3615 4325 2.502213 TTCGCCCATACATAGACGTG 57.498 50.000 0.00 0.00 0.00 4.49
3616 4326 2.166870 TGTTTCGCCCATACATAGACGT 59.833 45.455 0.00 0.00 0.00 4.34
3617 4327 2.816689 TGTTTCGCCCATACATAGACG 58.183 47.619 0.00 0.00 0.00 4.18
3618 4328 4.189231 AGTTGTTTCGCCCATACATAGAC 58.811 43.478 0.00 0.00 0.00 2.59
3619 4329 4.481368 AGTTGTTTCGCCCATACATAGA 57.519 40.909 0.00 0.00 0.00 1.98
3620 4330 4.211374 GCTAGTTGTTTCGCCCATACATAG 59.789 45.833 0.00 0.00 0.00 2.23
3621 4331 4.124238 GCTAGTTGTTTCGCCCATACATA 58.876 43.478 0.00 0.00 0.00 2.29
3622 4332 2.943033 GCTAGTTGTTTCGCCCATACAT 59.057 45.455 0.00 0.00 0.00 2.29
3623 4333 2.352388 GCTAGTTGTTTCGCCCATACA 58.648 47.619 0.00 0.00 0.00 2.29
3624 4334 1.326548 CGCTAGTTGTTTCGCCCATAC 59.673 52.381 0.00 0.00 0.00 2.39
3625 4335 1.647346 CGCTAGTTGTTTCGCCCATA 58.353 50.000 0.00 0.00 0.00 2.74
3626 4336 1.644786 GCGCTAGTTGTTTCGCCCAT 61.645 55.000 0.00 0.00 41.53 4.00
3627 4337 2.322081 GCGCTAGTTGTTTCGCCCA 61.322 57.895 0.00 0.00 41.53 5.36
3628 4338 2.322081 TGCGCTAGTTGTTTCGCCC 61.322 57.895 9.73 0.00 46.14 6.13
3629 4339 1.154469 GTGCGCTAGTTGTTTCGCC 60.154 57.895 9.73 0.00 46.14 5.54
3630 4340 0.721483 GTGTGCGCTAGTTGTTTCGC 60.721 55.000 9.73 3.58 46.78 4.70
3631 4341 0.579630 TGTGTGCGCTAGTTGTTTCG 59.420 50.000 9.73 0.00 0.00 3.46
3632 4342 1.656429 CGTGTGTGCGCTAGTTGTTTC 60.656 52.381 9.73 0.00 0.00 2.78
3633 4343 0.303493 CGTGTGTGCGCTAGTTGTTT 59.697 50.000 9.73 0.00 0.00 2.83
3634 4344 1.931551 CGTGTGTGCGCTAGTTGTT 59.068 52.632 9.73 0.00 0.00 2.83
3635 4345 3.625232 CGTGTGTGCGCTAGTTGT 58.375 55.556 9.73 0.00 0.00 3.32
3643 4353 1.355210 AAAAAGAGGCGTGTGTGCG 59.645 52.632 0.00 0.00 35.06 5.34
3659 4369 2.105134 TGAGAGGGACCGCAAGTAAAAA 59.895 45.455 0.00 0.00 0.00 1.94
3660 4370 1.695242 TGAGAGGGACCGCAAGTAAAA 59.305 47.619 0.00 0.00 0.00 1.52
3661 4371 1.001633 GTGAGAGGGACCGCAAGTAAA 59.998 52.381 0.00 0.00 0.00 2.01
3662 4372 0.606604 GTGAGAGGGACCGCAAGTAA 59.393 55.000 0.00 0.00 0.00 2.24
3663 4373 0.541063 TGTGAGAGGGACCGCAAGTA 60.541 55.000 0.00 0.00 0.00 2.24
3664 4374 1.837051 TGTGAGAGGGACCGCAAGT 60.837 57.895 0.00 0.00 0.00 3.16
3665 4375 1.374758 GTGTGAGAGGGACCGCAAG 60.375 63.158 0.00 0.00 0.00 4.01
3666 4376 2.741092 GTGTGAGAGGGACCGCAA 59.259 61.111 0.00 0.00 0.00 4.85
3667 4377 3.680786 CGTGTGAGAGGGACCGCA 61.681 66.667 0.00 0.00 0.00 5.69
3669 4379 4.436998 GGCGTGTGAGAGGGACCG 62.437 72.222 0.00 0.00 0.00 4.79
3670 4380 1.681327 TAGGCGTGTGAGAGGGACC 60.681 63.158 0.00 0.00 0.00 4.46
3671 4381 1.511768 GTAGGCGTGTGAGAGGGAC 59.488 63.158 0.00 0.00 0.00 4.46
3672 4382 2.044555 CGTAGGCGTGTGAGAGGGA 61.045 63.158 0.00 0.00 0.00 4.20
3673 4383 2.490217 CGTAGGCGTGTGAGAGGG 59.510 66.667 0.00 0.00 0.00 4.30
3685 4395 0.109319 GCATTTTGCCCACACGTAGG 60.109 55.000 0.00 0.00 37.42 3.18
3686 4396 0.595588 TGCATTTTGCCCACACGTAG 59.404 50.000 0.00 0.00 44.23 3.51
3687 4397 1.252175 ATGCATTTTGCCCACACGTA 58.748 45.000 0.00 0.00 44.23 3.57
3688 4398 1.252175 TATGCATTTTGCCCACACGT 58.748 45.000 3.54 0.00 44.23 4.49
3689 4399 1.991965 GTTATGCATTTTGCCCACACG 59.008 47.619 3.54 0.00 44.23 4.49
3690 4400 1.991965 CGTTATGCATTTTGCCCACAC 59.008 47.619 3.54 0.00 44.23 3.82
3691 4401 1.671261 GCGTTATGCATTTTGCCCACA 60.671 47.619 3.54 0.00 44.23 4.17
3692 4402 0.998669 GCGTTATGCATTTTGCCCAC 59.001 50.000 3.54 0.00 44.23 4.61
3693 4403 3.432517 GCGTTATGCATTTTGCCCA 57.567 47.368 3.54 0.00 44.23 5.36
3703 4413 0.748005 AGGTCATGTGGGCGTTATGC 60.748 55.000 0.00 0.00 45.38 3.14
3704 4414 1.134401 AGAGGTCATGTGGGCGTTATG 60.134 52.381 0.00 0.00 0.00 1.90
3705 4415 1.139058 GAGAGGTCATGTGGGCGTTAT 59.861 52.381 0.00 0.00 0.00 1.89
3706 4416 0.535335 GAGAGGTCATGTGGGCGTTA 59.465 55.000 0.00 0.00 0.00 3.18
3707 4417 1.194781 AGAGAGGTCATGTGGGCGTT 61.195 55.000 0.00 0.00 0.00 4.84
3708 4418 1.610673 AGAGAGGTCATGTGGGCGT 60.611 57.895 0.00 0.00 0.00 5.68
3709 4419 3.303189 AGAGAGGTCATGTGGGCG 58.697 61.111 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.