>input_sequence_44574
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ATGGGCACGGCGGTGCAGGGGCCCAAGCCGGACCCCATCCGCCGCGCCGTCCTCC
GCGCCATCGAGATAGGGTACCGCCACTTCGACACGGCGGCGCACTACGAGACCGAGGCCCCCATCGGCGAGGCCGCCGCC
GAGGCCGTGCGCTCCGGCGCCGTCGCCTCCCGGGACGAGCTCTTCATCACCTCCAAGCTCTGGTGCAGCGACGCCCACCG
CGACAGGGTCGTCCCCGCCCTCAGGCAGTCGCTCCGGTACGGCGCCCATCTCCTCCTCTTGCTCAGATTTCGATTTCGCT
TGGATCTCATGATAATCATGACAAGCCTGTGCTCTAGGGTCGGTCGTGTAGCACTGAGGTAGGAGTATTACAGCTATCCT
GTCTGTGATTAA----GGCCTGAAAAGCATGGAACCAATTGCCAATTT--------GCCGCTGAAGCAAAACCTAGAAAA
TACTGAAGAGAGACATACATAATACTAG-----TAGATGA------TAATACTACATGGGACCAATTGCATAC-----TA
CTCCAACTGACCGCTTGAAAACCACTGCTAGGAAGGAGTGAAATGGGTTTGACAGGCATGCCGGGT--------------
----------------------------TTGTCACTTTGATGTGCACCTATCTTTCAGGCATATCAGTTGAGCCCACACA
TCAACGGTGTCGGCCCAAGTTCCAACAAACGTGGATCTTTCTCACACACCACACTGATCTGATCTGACAACCTGAACAAG
AAACCCAGTAGAAATTCACTGTCGCGTAAAGCCAACATTGCAATTCCCAGAAGAC---ACTAGCTGGAGCAAGCTAGCTT
A------GCTAGCTCCAAATACAGATCAAATCAGTCCTGTCGTGCATCATCGATCGA------------CTCACGGGCAC
TGAACCCAACATTGCAAGTGCACCGTTGCGCCATCGTGTAACTGATCTAGTACTATTATTGGTTAGAGAATGGCCCCTGA
CAGGAAT---TACTTAACCACGGCGCATCCGCGTAATGAATGGCACTGCAGGAATCTCCAGATGGAGTACGTGGACCTGT
ACCTTGTCCACTGGCCGGTGTCCATGAAGCCCGGGCGGTTCAAGGCCCCCTTCACGGCCGAGGACTTCGTGCCCTTCGAC
ATGCGGGCCGTGTGGGAGGCCATGGAGGAGTGCCACAGGCTGGGCCTCGCCAAGGCCATCGGCGTCGCCAATTTCTCCTG
CAAGAAGCTGGAGACCCTCCTCTCCTTCGCCACCATCCCTCCCACCGTCAATCAGGTCACCATACATTCCTACATACAGT
ACATCTAATTGATTTTGTTCATAAAAAATACAAGTAGATCATACACACGACG----------AAGTGAGTGACCGATGTG
TCCTTTTGCAGGTGGAGGTGAACCCGGTGTGGCAGCAGAGAAAGCTGAGGGAGTTCTGCAGGGGCAAGGGCATCCAGCTG
TGCGCCTACTCGCCGCTGGGGGCCAAGGGCACGCACTGGGGCAGCGACGCCGTGATGGACGCCGGCGTCCTGCAGGAGAT
CGCCGCGTCCAGGGGCAAGAGCGTGGCGCAGGTGTGCCTGAGGTGGGTGTACGAGCAGGGGGACTGCCTCATCGTCAAGA
GCTTCGACGAGGCCCGGATGAGGGAGAACCTGGAGGTGGACGGCTGGGAGCTCACGGAGGAGGAGCGCCTCCGGATCGCC
GAGATCCCGCAGCGCAAGATCAACCTCGGCAAGCGCTACGTGTCCGAGCACGGGCCCTACAAGTCCCTCGAGGAGCTCTG
GGACGGCGAGATATGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr4D_1_TraesCS4D01G232200
TTGGCATGTTTGAGATTAGGCCATTATTCGTAGGAAGAGGTAATGAACCTATAAAATTTCTTGTCATTGTGCGACCGGTA
TGATGAACCGTCTTTCCTTTGATCCCCCCC-ATGTATTATGTGACGTCCAGACAGTATTACTTTGTTGAACCATAACAGC
CCATATAAATTTCTGTGCAAGTTCCTATGGCAGAA---------------------------AGAAAGGGCATGCCCAGT
TGATCTGTACCTTTGTCCT----------TGTATCCTATGCGTTCTGGTTATATATTGTCAGATTTTGAAA---TATTTT
CTTTACAAATCTGGCAAAGTTTCTTCTGTAATTTACCAGTGAGCTA----------------------------ATTGCC
AAGCACCTCTGAAGGTCCTCTTATTTATTTGTTCAT----AACCATTTTTTCACAACATCGGTACAGATTACAGAAGCAC
AGTT--------------------------------------TATTAAAGAGAAAAAGGAAAGCATAAAGGAGAAATCAA
TA--ACTCCG--TGTTACACTGGCGATATCTTTAGAAAAATGCCATGGAATTAGTAGAGTAGTGTGACATTTCAACTGCT
GCTTTGCTTATTTTTGGCTAAAGCATGGTGATGCAGGCATGGACTTGGCTGTGGCCTCGTGCCGGTTCTAGCAGGTTGGC
ATGATCAGCGCCTTTCTTTTGT------AGCCGCATCGTCCAAGGATAGG------ACACGGCAACGCCCAAATCGTAAA
AACGGACGCAGAAAGCACGCTGCGTCTAGACT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AACACCAAGAATTTCCGCATCTTTAATCGGCCAAAAGCTTGCACCGACCCGAGG
AGCTCAACCAC--TCCTACCACTACCAGTGACCCGAGGCACGTCTCATGCCGTCACATGCCGTCAACGCCTCGGAAGAGC
GCATATATGCGGCGTATCCCGCAGATT-----------GTATTAACCCCAGGCACGCCTCCCGCTGCAACTAACCCGAGT
CCTTTCACCCTGCACAGAA--------TCTCAGC---ACCCACAGGTCTCGACTCAAGCCATGGGCGCCGGCGAGAAGAC
GGCCGCGGGCATGCCGCGCATCGGCATGGGCACGGCGGTGCAGGGGCCCAAGCCGGACCCCATCCGCCGCGCCGTCCTCC
GCGCCATCGAGATAGGGTACCGCCACTTCGACACGGCGGCGCACTACGAGACCGAGGCCCCCATCGGCGAGGCCGCCGCC
GAGGCCGTGCGCTCCGGCGCCGTCGCCTCCCGGGACGAGCTCTTCATCACCTCCAAGCTCTGGTGCAGCGACGCCCACCG
CGACAGGGTCGTCCCCGCCCTCAGGCAGTCGCTCCGGTACGGCGCCCATCTCCTCCTCTTGCTCAGATTTCGATTTCGCT
TGGATCTCATGATAATCATGACAAGCCTGTGCTCTAGGGTCGGTCGTGTAGCACTGAGGTAGGAGTATTACAGCTATCCT
GTCTGTGATTAA----GGCCTGAAAAGCATGGAACCAATTGCCAATTT--------GCCGCTGAAGCAAAACCTAGAAAA
TACTGAAGAGAGACATACATAATACTAG-----TAGATGA------TAATACTACATGGGACCAATTGCATAC-----TA
CTCCAACTGACCGCTTGAAAACCACTGCTAGGAAGGAGTGAAATGGGTTTGACAGGCATGCCGGGT--------------
----------------------------TTGTCACTTTGATGTGCACCTATCTTTCAGGCATATCAGTTGAGCCCACACA
TCAACGGTGTCGGCCCAAGTTCCAACAAACGTGGATCTTTCTCACACACCACACTGATCTGATCTGACAACCTGAACAAG
AAACCCAGTAGAAATTCACTGTCGCGTAAAGCCAACATTGCAATTCCCAGAAGAC---ACTAGCTGGAGCAAGCTAGCTT
A------GCTAGCTCCAAATACAGATCAAATCAGTCCTGTCGTGCATCATCGATCGA------------CTCACGGGCAC
TGAACCCAACATTGCAAGTGCACCGTTGCGCCATCGTGTAACTGATCTAGTACTATTATTGGTTAGAGAATGGCCCCTGA
CAGGAAT---TACTTAACCACGGCGCATCCGCGTAATGAATGGCACTGCAGGAATCTCCAGATGGAGTACGTGGACCTGT
ACCTTGTCCACTGGCCGGTGTCCATGAAGCCCGGGCGGTTCAAGGCCCCCTTCACGGCCGAGGACTTCGTGCCCTTCGAC
ATGCGGGCCGTGTGGGAGGCCATGGAGGAGTGCCACAGGCTGGGCCTCGCCAAGGCCATCGGCGTCGCCAATTTCTCCTG
CAAGAAGCTGGAGACCCTCCTCTCCTTCGCCACCATCCCTCCCACCGTCAATCAGGTCACCATACATTCCTACATACAGT
ACATCTAATTGATTTTGTTCATAAAAAATACAAGTAGATCATACACACGACG----------AAGTGAGTGACCGATGTG
TCCTTTTGCAGGTGGAGGTGAACCCGGTGTGGCAGCAGAGAAAGCTGAGGGAGTTCTGCAGGGGCAAGGGCATCCAGCTG
TGCGCCTACTCGCCGCTGGGGGCCAAGGGCACGCACTGGGGCAGCGACGCCGTGATGGACGCCGGCGTCCTGCAGGAGAT
CGCCGCGTCCAGGGGCAAGAGCGTGGCGCAGGTGTGCCTGAGGTGGGTGTACGAGCAGGGGGACTGCCTCATCGTCAAGA
GCTTCGACGAGGCCCGGATGAGGGAGAACCTGGAGGTGGACGGCTGGGAGCTCACGGAGGAGGAGCGCCTCCGGATCGCC
GAGATCCCGCAGCGCAAGATCAACCTCGGCAAGCGCTACGTGTCCGAGCACGGGCCCTACAAGTCCCTCGAGGAGCTCTG
GGACGGCGAGATATGAGTAGCCAGTGGAGAGGCCGACTGTCCGGCGCTACGTGTGTGCTGGG-----------------T
GTCATCCTTGGCCATGGGCGGGTGGTTGATCGGGGGA-----------CGATTTCCCTTTGAATAAAATCATGTTCTGCA
TTGTGTTTCAGTGAATAAATGAAGATGTTTACTGCCGCATTTAAGGAGAGTTATTAAGAGATCGGGATCATCTCATCATG
TTATTATGCGTACTTTCCTGGCAATGTAAGTTGTTCCAAGGGCAGAACAGAACAAAAAGAAGTGTGTATGTAAATAAAGA
GAGGCAGCGGCGTCGAGTTTCATCATGGGCCGTATGCC----GCATGCGCTCGACGCAAGCATCTGCT------------
---------------------------------ATAATGGGTGGCAGAGCAGCCCACTGACGGCTAGCCGTCGTCGT-GC
CAACCGGCCGGGCCCGACAATGCCGGCGAAGTGCCGTGCTTGCTTTTAG-------------------------------
---AAAAATGGTAGCTCTTGCTCGGCGGCCGGGTGACTAGCACGACCAGTCAGATGTTGCAGTGCCGGTGCTAAGCTAAC
GTACGTCAAGTGTGTGAGAAACTGCACATTTGTCATTTTTTCAAATATAACATATAGTACTA------------------
----------CTAGTCTGCAAGTACTACCCATTTCGGCCCCTGAAATACTCCGCTGCTGATGTCCATGTTTGTTAGTCCT
GAACATTCCGAGAATGTACTCTACTAGGATTTGGGATGCGATCAATGCATGGCTGGGGATGCAATCTCAGGTCAGTTCCT
GGTCCGCTCTTCCATCGGTGGCAACGTGGTGGAACGGACATGGTGGGATGGTGGGAGTCAACAGGAATGCCTATAATTCT
TTGAGGACGACGATAACTGCCACACGTGTGGGCGTTAAGGGGTCTGCACATATGTTTTGTGTGGTGTCTAAGAGGACCAG
TTCACACGTCTATGTATGGGCGAAACAACTAGCGCACACACGCCTCTTTTTTTACTTGCGGTCCCTCTCACACGCCTACG
TGTGGGCAAAATGCATAACGCCCACATGACCTCTCT
>chr4A_1
TTGGCATGTTTGAGATTAGGCCATTATTCATAGGAAGAGGTAATGAACCTATAAAATTTCTTGTCATTGTGCGACCGGTA
TGATGAACCGTCTTTCCTTTGATCCCCCCCCATGTATTATGTGACGTCCAGACAGTATTACTTTGTTGAACCATAA---C
CTATATAAATTTCTGTGGAAGTTCCTATGGCAGAATAACACACGTGTAGAGATGATGCCTCAAG-AAGGGCATGTCCAGT
CGATCTGTACCGTTGTACTCCTACTACTCTGTATCCTATGCGTTCTGGTTATATATTGTCAGGTTTTGAAACAGTATTTT
CTTTGCAAACCTGGCAAAGTTTCTGCTGTATTTTAGCAATGAGCTGAATGTTGTCATCGCTGGTTTGCAAAACCATGGTC
AAGCACATCTGAAGGTCCTCTTATTTATTTGTTCATTCATAACCATTTTTTCACATAATTGGTACAGATTACAGAAGCAA
TCATAATGTAGGAAATGTCAAATCTGGGCTAAATGTACAGTCTATTAGAGAGAAAAAGGAAAACATGAAGGAGAGATCAA
TACTCTACTCCATGTTACACTGGCGACATCTTTAGGAAAATGCCATGGAATTAATGGACTAGTGTGACATTTCAACTGCT
GCTTTGCTTATTTTTGGCTAAAGCATGGTGATGCAGGCATGGACTTGGCTGTGGCCTCGTGCCGGTTCTAGCTGGATGGC
ATGATCAGCGCCTTTCTTT----TCGAGAGCCGCAT-----------------------------CGCCCAAATCGTAAA
AACGGACGCAGAAAGCACGCTGCGTCAGACTAGGCCCTTTTTGGTTTCAAATAAGTCACCAATTTATAAGTCGAAAAGTG
CAAAAGGTGACTTATTTTGCCAAACGGACCCAACTTATAAGTCATCCCAACTTATAAGTCATAAGTTGCTTCACTCCAAC
TTAAAACTTATAAGTTACCCCTTTTGCATGGGTCCCATCACCTTTACATAAAAAAACAAGATAGAAAGATGTGCTCAGAT
GACTTATAAGTCAGATGACAACCAAACAAGTGTGACTTATAAGTCACTGATTTTAAGTCACCTGACTTATAAGTTAGGTG
AATTATTGGAACCAAACAGGCCCTAACACTCCCAAAATTTCCGCATCTTTAATCGGCCAAAAGCTTGCACCGACCCGAGG
AGCTCAACC--ACTCCAATCACTACCAGTGAGCCGAGGCACGTCTCACGCCGTCA----------ACGCCTCGGAAGAGC
GCATATATGCGGCGTATCCCGTAGACTGGACTCCCACAGTATTAACCCCAGGCACGCCTCCCGCTGCAACCAACCCGAGT
CCTTCCACCCTGCACAGAA--------TCTCAGCCCAACCCACAGGTCTCGACTCAAGCCATGGGCGCCGGCGACAAGAC
GGCCGCGGGCATGCCGCGCATCGGCATGGGCACGGCGGTGCAGGGGCCCAAGCCGGACCCCATCCGCCGCGCCGTCCTCC
GCGCCATCGAGGTAGGGTACCGCCACTTCGACACGGCCGCGCACTACGAGACCGAGGCCCCCATCGGCGAGGCCGCCGCC
GAGGCCGTGCGCTCCGGCGCCGTCGCCTCCCGGGACGACCTCTTCATCACCTCCAAGCTCTGGTGCAGCGACGCGCACCG
CGACAGGGTCGTCCCCGCCCTCAGGCAGACGCTCCGGTACGGCGCCCATCTCCCGCTCTTCCTCA------GATTTCGCT
TGGATCTCATGATAATGAGA--AAGCCTGTGCTCTAGGGTCCGTCGTGTAGCACTGAGATAGTAGCATTACAGCTATTCT
GTTTGTGATTAATTGTGGCCTAAAAATCATGGAACCAATTGTCAATCTGAACAATCGCCGCTGAAGCAAAACCTATAAAA
TACTGAAAAGAGACATACATAATACTACTACGCTAGATAA------TAATACTACATGGTACTAATTGCATAGCGTAGTA
CTCCAACTGACCGTTGAAAATCA----CTAGGAAGGAGTAAAATGGGCTTGACAGGCATGCCGGGTACTT----------
------CGCTGGTCTAGAGGCCGTAAGATTGTCACTTTGATGTGCACCTATCTTTCAGGCATATCAGTTGAGCCCACACA
TCAACGGTGTCGGTCCAAGTTCCAACAAACGTGGATCATTCTCACACACCAGACTGATCTGATCTGACAACCTGAACAAG
AAACCCAGTAGAAATTCACTGTCGGGTAAAGCCAACATTGCAATTCCCAGAAGAC---GCTAGCTGGAGTAAGCTAGCTT
AGCCTTAGCTAGCTCCAAATACAGATCAAATCAGTCCTGTCGTGCATAATCGATCGA------------C----------
-----------------GTGCACTGTTGCGCCATCGTGTAACTGATCTAGTACTATTATTGGTTAGAG-ATGGCCTCTGA
CAGGAATTACTACTTAACCACGGCGCATCCGCGTAATGAATGACACTGCAGGAATCTCCAGATGGAGTACGTGGACCTGT
ACCTCGTCCACTGGCCGGTGTCCATGAAGCCCGGGCGGTTCAAGGCCCCCTTCACGGCGGAGGACTTCGTGCCGTTCGAC
ATGCGGGCCGTGTGGGAGGCCATGGAGGAGTGCCACAGGCTGGGCCTCGCCAAGGCCATCGGCGTCGCCAATTTCTCCTG
CAAGAAGCTTGAGACCCTCCTCTCCTTCGCCACCATCCCTCCCACCGTCAATCAGGTCACCTTAACTCCTTACATACA--
---TCCAACTAATGTTGTTTATAAACAATGCAGATCGATCATACATACTACCACGAAGTGACAAGTGAGTGACTGATGTG
CCATTTTGCAGGTGGAGGTGAACCCGGTGTGGCAGCAGAGGAAGCTGAGGGAGTTCTGCAGGGGCAAGGGCATCCAGCTG
TGCGCCTACTCGCCGCTGGGGGCCAAGGGCACGCACTGGGGCAGCGACGCCGTGATGGACGCGGGCGTCCTGCAGGAGAT
CGCCGCGTCCAGGGGCAAGAGTGTGGCGCAGGTGTGCCTGAGGTGGGTGTACGAGCAGGGGGACTGCCTCATCGTCAAGA
GCTTCGACGAGGCCCGGATGCGGGAGAACCTGGACGTGGACGGCTGGGAGCTCACCGAGGAGGAGCACCGCAGGATCGCG
GAGATCCCGCAGCGCAAGATCAACCTCGGCAAGCGCTACGTGTCCGAGCACGGGCCCTACAAGTCCCTCGAGGAGCTCTG
GGACGGTGAGATATGAGTGATCACTGGAGAGGCTGGCTGGCCGGTGCGACGGGTTCTGTTGGGT---------------T
GTCATCCTTGGCCATGGATGGGTGGTTGATCGGGGGA-----------CGATTTCCCTTTGAATAAAATCATGTTCTGCA
TTGTGTTTCAGTGAATAAATGGAGATGTTTACTACCGGATTTAAGGAGAGTTACTAAGAGATTGGGATCATCTCATCATG
TTATTATGCGTACTTTCCTGGCAATGTAAGTTGTTACAATGGCAGAACAAAAAGAAGGTGTA--------TAAATAAAGA
GAGGCAGCGGCGTCGGGTTTGATCATGGGCCGTATGCC----GCATGCGCGCGACGCAAGCATCTGCTTGGACATGACCA
AGCAACTGGACCGCTTGCCAGGCTTGTCGTATGATAATGGGTGGCAGAGCAGCCCAGTGCCGGCTAGCCGTCGTGCCAGC
CAACCGGCCGGGCCCGACAATGCCGGCGAAGTGCCGTGCGGGGCGCAGCCCTTTAGCTAGCTCTTGCTTCTCTCTCTCTA
AAAAAAAAGGGTAGCTCTTGATCGGCGAACGGGTGACTAGCACGACCAGTCAGATGTTGCAGTGCCGGTGCTAGG-TAAC
GTACGTCAAGTGTGTGAGAAGTTATA----------TTTTTGAAATGTAACAAATAATAAACGAATCCCAAAAATTCAGT
ACTACTACTGCTAGTCTGCTACTACTACCCATTTCGGCACCTGAAATACTCCGCTACTGATGTCCATGTCTGTTAGTTCT
GAACACTCCGAGAAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr4B_1
TTGGCATGTTTGAGATTAGGCCATTATTCATAGGAAGAGGTAATGAACCTATAAAATTTCTTGTCATTGTGCGACCGGTA
TGATGAACCGTCTTTCCTTTGATCCCCCCC-ATGTATTATGTGACGTCCAGACAGTATTACTTTGTTGAACCATAACAGC
CTATATAAATTTCTGTGCAAGTTCCTATGGCAGAATAACACACGTGTAGAGATGATGCCTCAAGGAAGGGCATGCCCAGT
CGATCTGTACCGTTCTACT----------TGTATCCTATGCGTTCTGGTTATA-ATTGTCAGATTTTGAAACAGCATTTT
CTTTAAAAACCTGGCAAAGTTTCTTCTGAAATTTACCCGTGTGTTAATTGTTGTTGTCATTGGTTTGCAAAACCATTGCC
AAACACCTCTGAGGGCCCTC---TTTATTTATTTGTTCATAACCATTTTTTCATAACATCGGTGCAGATTACAGAAGCAA
TCATGATGTAGGAAATGTCAAATCT----------------------GAGAGAAAAAGGAAAACATAAAGGAGAAATCAA
CGCTACTCCG--TGTTACTCTGGCGGCATCTTTAGAAAAATGCCATGGAATTAATGGAGTAGTGTGACATTTCAACTGCT
GCTTTGCTTATTTTTGGCTAAAGCATGTTGATGCAGGCATGGACTTGGCTGTGGCCTCGTGCCGGTTCTAGCAGGATGGC
ATGATCAGCGCCTTTCTTTCTTTTCGAGAGCCGCATCGCCGGAGTAGATCGATTGCACACGGCAACGCCCAAATCGTAAA
AACGGACGCAGAAAACACGCTGCATCTAGACTA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AAAACACCCAAAATTTCCGCATCTCTAATCGGCCAAAAGCTTGCACTGACCCGAGG
AGCTCAACCACACTCCTACCACTACCAGTGACCTGAGGCACGTCTCATGCCGTCA----------ACGCCTCGGAAGAGC
GCATATATGTGGCTTATCCCGCAGACTGGACTCCCACAGGATTAATTTCAGGCACGCCTCCCGCTGCAACCGACCCGAGT
CCTTCCACCCTGCTTCAGAGTCTCGCCTCTCAGCCCAACCCACAGGTCCCAACTCAAACCATGGGCGCCGGCGACAAGAC
GGCCGCGGGCATGCCGCGCATCGGCATGGGCACGGCGGTGCAGGGGCCCAAGGCGGACCCCATCCGCCGCGCCGTCCTCC
GGGCCATCCAGATAGGGTACCGCCACTTCGACACGGCCGCGCACTACGAGACCGAGGCCCCCATCGGCGAGGCCGCCGCC
GAGGCCGTGCGCTCCGGCGCCGTCGCCTCCCGGGATGAGCTCTTCATCACCTCCAAGCTCTGGTGCAGCGACGCGCACCG
CGACAGGGTCGTCCCCGCCCTCAGGCAGACGCTCCGGTACGGTGCCCATCTCCTCCTCTTCCTCA------AATTTCGCT
TGGATTGCATGATAATCAGA--AGTT-TGTGCTCTACGGTCGGTCGTGTAGCACTTAGATAGTAGTATTACATCTATTCT
GTTTGTGATTAATTGTGGCCTACAATACATGGAACCAATTGTCAATTTGAACAATTGCCGCTGAAGCAAAACCTAGAAAA
TACTGAAGAGAGACATACATAATAGTACTACTTTCTACGGTAGATGTAATACTACATGGGACCAATTGCATAGT---GTA
CTCCAACTGACCTCTTGAAAACCACCG---GGAAGGAGTGAAGTGGGTTTGACAGGCATGCCGGGTACTAGTCTCCTAGC
CACCTACGCTGGTCTCGAGGCCGTAAGATTGTCACTTTGATGTGCACCTATCTTTCAGGCATAGCTGTTGAGCCCACACA
TCAACGGTGTCGGTCCAAGTTCCAACAAACGTGGATCCTTCTCG--CACCACACTGATCTGATCTGACAACCTGAACAAG
AAACCCAGTAGAAATTCACTGTCGCGTAAAGCCAACATTGCAATTCTCAGAAGACACAACTAGCTGGAGTAAGCTAGCTT
A------GCTAGCTCCAAATACAGATCAAATCAGTCCTGTCGTGCATCATCGATATCCTCTCTCACACCCTCACGGGCAC
CGAACCCAACATTGCAAGTGCACTGTTGCGCCATCCTGTAACTGATCTACTATTATTGGTTAGCAGTG-ATGGCCTCTGA
CAGGAAT---TACTTAACCACGGTGCATCCACGTAATGAATGACACTGCAGGAATCTCCAGATGGAGTACGTGGACCTGT
ACCTTGTCCACTGGCCGGTGTCCATGAAGCCCGGGCGGTTCAAGGCCCCCTTCACGGCCGAGGACTTCGTGCCGTTCGAC
ATGCGGGCCGTGTGGGAGGCCATGGAGGAGTGCCACAGGCTGGGCCTCGCCAAGGCCATCGGCGTCGCCAATTTCTCCTG
CAAGAAGCTGGAGACCCTCCTCTCCTTCGCCACCATCCCTCCCACCGTCAATCAGGTCACCATACATCCCTACATACAGT
ATATCTAATTGATTTTGTTCATAAAAAATACAAGTAGATCATACCAAGTGTGAAGTGACTGGT-----------------
-CATTTTGCAGGTGGAGGTGAACCCGGTGTGGCAGCAGAGGAAGCTGAGGGAGTTCTGCAGAGGCAAGGGCATCCAGCTG
TGCGCCTACTCGCCGCTGGGAGCCAAGGGCACGCACTGGGGCAGCGACGCCGTGATGGACGCCGGCGTCCTGCAGGAGAT
CGCCGCGTCCAGGGGCAAGAGCGTGGCGCAGGTGTGCCTGAGGTGGGTGTACGAGCAGGGGGACTGCCTCATCGTCAAGA
GCTTCGACGAGGCCCGGATGCGGGAGAACCTGGACGTGGACGGCTGGGAGCTCACGGAGGAGGAGCGCCGCCGGATCGCC
GAGATCCCGCAGCGCAAGATCAACCTCGGCAAGCGATACGTGTCCGAGCACGGGCCGTACAAGTCCCTCGAGGAGCTCTG
GGACGGCGAGATATGAGTAGCCAGTGGAGA--CCGACTGGCCGGCCGTACGTACGTACCACGAGCGGTTGTATGTCGGAT
GTCATCCTTGGCCATTGATGGCTGGTTGATCGGGGGACAGCTTTGCACCGATTTCCCTTGGAATAAAAGGATGTTCTGTA
TTGTGTTTCAATGAATAAATCAAGATGTTTATGCCTACTTGGCACGGTT-------------------------------
-----------------------------GTTGTTCCAGGGGC----------------------------------AGA
GAGGCAGCGGCGTCGGGTTTCATCATGAGCCGGGTGCCGCATGCATGCGCTCGACGCAAGCATCTGCTAGGACGTGATCA
AGCAACTGAACCGCTTGCCAGGCTCCTCATAATGT----GGGGGCAGAGCAGCCCACTGCCGGCTAGCCGCCGTCGT-GC
CAACCGGCCGGGCCCGACAATGCCGGCGAAGTGCCGTGC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>SNPs
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-S--------------------------------------------------------------S---------------
S----------S----S---------------------------------------------------------------
---------S----------------------------------------------------------------------
-------------------------------------------------------------------------------S
SSS--------------------------------------------S--------------S-----------------
--------------------------S--------------------------S-S------------------------
---------------------------------------------------------------------------S----
-------------------SS-----------------S-SS--S-S-SS------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-S---------------------------------------------
-------------------------------------------------------SSSSSSSSSS---------------
-------------------------S--------------------------------------------S---------
----S---------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------S-----
----------------------------S-------------------------------S----SSSSSS---------
------------------SSSS------------------------------------S---S--------------S--
--S------------------S----S--------------S--------------------------------------
---------------------------S--------------------------------------------S-------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
-------------S-----------------------S------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
S----------------------S--------------------------------------------S------S----
------------------------------------------S-------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
-S-------------------------------------------S--S------------------------S------
S-S-------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-------------S----------------------------------S----------
--------------------------------------------------------------------------------
---------------------------------------S----------------S--S--------------------
-----------------SS-------------------------------------------------------------
---------------------------------S-------------------S--------S-----------------
-------------------------------------------------S--SS--SSSSSSSSSSSSSS----------
---------------S----------------------------------------------------------------
-----------------------------------------------------------S--------------------
---------------------------------------SS-SSSSSSS-------------------------------
--------S-----------S------SS--------------------------------------------S-S----
--------------------SS-SS-SSSSSSSSSS-----S----S-----S---S--SSS------------------
-------------------S-S----------------S----------------S-------------S-------S--
-----S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_587
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CTCCGTGTTACACTGGCGAT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_1882
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CCAATTTGCCGCTGAAGCAA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_770
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CCGCATCGTCCAAGGATAGG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2469
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AATGGCCCCTGA
CAGGAATT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_1258
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CACGTCTCATGCCGTCACAT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2921
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AAAGCTGAGGGAGTTCTGCA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_2883
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------AGTGAGTGACCGATGTG
TCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_4250
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ACGATAACTGCCACACGTGT---------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
