Multiple sequence alignment - TraesCS4D01G226700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G226700 chr4D 100.000 3172 0 0 1 3172 385984877 385988048 0.000000e+00 5858.0
1 TraesCS4D01G226700 chr4D 90.681 279 19 5 1174 1445 101498795 101499073 6.470000e-97 364.0
2 TraesCS4D01G226700 chr4D 78.389 509 89 16 1 496 375155345 375155845 8.540000e-81 311.0
3 TraesCS4D01G226700 chr4A 93.043 690 37 6 1900 2583 67260636 67261320 0.000000e+00 998.0
4 TraesCS4D01G226700 chr4A 91.516 719 41 9 480 1185 67259441 67260152 0.000000e+00 972.0
5 TraesCS4D01G226700 chr4A 92.871 533 37 1 1452 1984 67260141 67260672 0.000000e+00 773.0
6 TraesCS4D01G226700 chr4A 90.385 520 26 13 2668 3172 67261319 67261829 0.000000e+00 662.0
7 TraesCS4D01G226700 chr4A 77.836 379 67 12 1 373 476142969 476143336 5.330000e-53 219.0
8 TraesCS4D01G226700 chr4B 93.171 615 33 7 566 1178 472423279 472423886 0.000000e+00 894.0
9 TraesCS4D01G226700 chr4B 88.980 735 61 9 1508 2239 472428360 472429077 0.000000e+00 891.0
10 TraesCS4D01G226700 chr4B 85.744 484 66 3 5 487 472422665 472423146 2.820000e-140 508.0
11 TraesCS4D01G226700 chr4B 90.120 334 18 7 2852 3172 472485899 472486230 1.360000e-113 420.0
12 TraesCS4D01G226700 chr4B 76.923 507 91 18 3 496 526721855 526721362 6.750000e-67 265.0
13 TraesCS4D01G226700 chr4B 87.692 130 9 4 2326 2454 472429091 472429214 9.170000e-31 145.0
14 TraesCS4D01G226700 chr7D 91.667 276 19 3 1174 1445 40716230 40716505 2.310000e-101 379.0
15 TraesCS4D01G226700 chr7D 91.367 278 17 5 1174 1445 49806594 49806870 1.070000e-99 374.0
16 TraesCS4D01G226700 chr7D 91.007 278 19 3 1174 1445 141345637 141345360 1.390000e-98 370.0
17 TraesCS4D01G226700 chr7D 91.209 273 23 1 1174 1445 628510317 628510045 1.390000e-98 370.0
18 TraesCS4D01G226700 chr7D 91.228 57 3 2 2614 2670 133687516 133687570 3.390000e-10 76.8
19 TraesCS4D01G226700 chr2D 91.367 278 18 5 1174 1445 618294776 618294499 2.990000e-100 375.0
20 TraesCS4D01G226700 chr2D 77.042 453 90 10 5 452 650950047 650950490 6.790000e-62 248.0
21 TraesCS4D01G226700 chr1B 91.039 279 19 4 1173 1445 484457554 484457832 3.860000e-99 372.0
22 TraesCS4D01G226700 chr1B 90.210 286 21 5 1167 1445 683992180 683991895 1.800000e-97 366.0
23 TraesCS4D01G226700 chr1B 78.486 502 87 14 3 496 678205475 678204987 3.070000e-80 309.0
24 TraesCS4D01G226700 chr1B 75.149 503 97 19 3 496 633265969 633266452 8.910000e-51 211.0
25 TraesCS4D01G226700 chr1B 92.000 50 3 1 2624 2673 56271304 56271352 5.680000e-08 69.4
26 TraesCS4D01G226700 chr2A 91.039 279 18 5 1174 1445 434579962 434580240 1.390000e-98 370.0
27 TraesCS4D01G226700 chr6B 80.122 493 81 10 13 491 505712512 505712023 5.030000e-93 351.0
28 TraesCS4D01G226700 chr6B 79.290 338 60 8 1534 1866 129759181 129758849 8.850000e-56 228.0
29 TraesCS4D01G226700 chr6D 79.710 483 80 12 4 472 318357576 318358054 1.820000e-87 333.0
30 TraesCS4D01G226700 chr6D 78.698 338 62 8 1534 1866 57853637 57853305 1.920000e-52 217.0
31 TraesCS4D01G226700 chr3B 80.149 403 71 8 3 398 559897109 559897509 3.090000e-75 292.0
32 TraesCS4D01G226700 chr3B 74.354 503 109 18 4 496 18788977 18788485 2.500000e-46 196.0
33 TraesCS4D01G226700 chr3B 88.710 62 4 2 2614 2673 384062458 384062518 4.390000e-09 73.1
34 TraesCS4D01G226700 chr5B 84.351 262 36 5 3 262 375795978 375796236 5.250000e-63 252.0
35 TraesCS4D01G226700 chr5B 88.333 60 2 3 2614 2669 671717291 671717233 2.040000e-07 67.6
36 TraesCS4D01G226700 chr6A 79.179 341 55 12 1534 1866 72873435 72873103 4.120000e-54 222.0
37 TraesCS4D01G226700 chr2B 87.097 62 2 3 2614 2669 513281141 513281202 7.340000e-07 65.8
38 TraesCS4D01G226700 chrUn 86.885 61 2 4 2614 2669 336906378 336906437 2.640000e-06 63.9
39 TraesCS4D01G226700 chrUn 86.885 61 2 4 2614 2669 336908010 336908069 2.640000e-06 63.9
40 TraesCS4D01G226700 chrUn 86.885 61 2 4 2614 2669 336908554 336908613 2.640000e-06 63.9
41 TraesCS4D01G226700 chr7B 85.294 68 3 5 2614 2676 715543329 715543264 2.640000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G226700 chr4D 385984877 385988048 3171 False 5858.00 5858 100.00000 1 3172 1 chr4D.!!$F3 3171
1 TraesCS4D01G226700 chr4D 375155345 375155845 500 False 311.00 311 78.38900 1 496 1 chr4D.!!$F2 495
2 TraesCS4D01G226700 chr4A 67259441 67261829 2388 False 851.25 998 91.95375 480 3172 4 chr4A.!!$F2 2692
3 TraesCS4D01G226700 chr4B 472422665 472423886 1221 False 701.00 894 89.45750 5 1178 2 chr4B.!!$F2 1173
4 TraesCS4D01G226700 chr4B 472428360 472429214 854 False 518.00 891 88.33600 1508 2454 2 chr4B.!!$F3 946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 945 0.320946 CCTTTTCACTTACGGGCCGA 60.321 55.0 35.78 13.93 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2666 2799 0.035725 GGTGGTAGCCTGGTTGGTAC 60.036 60.0 0.0 0.0 38.35 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.753662 TCGTCCCTCCCTCACCGG 62.754 72.222 0.00 0.00 0.00 5.28
56 57 5.296035 GCCAAACTTGTTGTAGTAGACAGTT 59.704 40.000 0.00 0.00 39.88 3.16
82 83 1.226888 CGTCGTGCTAAGGCCCTAC 60.227 63.158 0.00 0.00 37.74 3.18
104 105 3.730761 CCAGCGCACCAGAACAGC 61.731 66.667 11.47 0.00 0.00 4.40
111 112 1.724582 GCACCAGAACAGCAACCGTT 61.725 55.000 0.00 0.00 0.00 4.44
131 132 4.441415 CGTTGCCGATGAAGAGAAGTATAC 59.559 45.833 0.00 0.00 35.63 1.47
158 160 1.145803 GAACCAACCTGTAGACGCAC 58.854 55.000 0.00 0.00 0.00 5.34
169 177 0.870393 TAGACGCACGAACGAAGACT 59.130 50.000 8.71 5.33 36.70 3.24
174 182 1.466866 CGCACGAACGAAGACTGGATA 60.467 52.381 0.14 0.00 34.06 2.59
201 209 4.780021 ACAGATCCATCAAAGACCAGTACT 59.220 41.667 0.00 0.00 0.00 2.73
222 230 4.713814 ACTGACTGAATCCTGCAAGATCTA 59.286 41.667 0.00 0.00 34.07 1.98
255 263 4.129737 CACACGCCCTCCGACGAT 62.130 66.667 0.00 0.00 41.02 3.73
263 271 1.655329 CCTCCGACGATGCTAGACC 59.345 63.158 0.00 0.00 0.00 3.85
271 279 0.752658 CGATGCTAGACCCATCACCA 59.247 55.000 0.00 0.00 39.17 4.17
275 283 2.481441 TGCTAGACCCATCACCAGAAT 58.519 47.619 0.00 0.00 0.00 2.40
289 299 2.581216 CAGAATGGGATCAGATGGGG 57.419 55.000 0.00 0.00 0.00 4.96
310 320 4.141390 GGGGAAGCTTATTCCATCTTCAGA 60.141 45.833 0.00 0.00 40.32 3.27
313 323 6.465607 GGGAAGCTTATTCCATCTTCAGAGAT 60.466 42.308 0.00 0.00 43.43 2.75
321 331 2.593346 ATCTTCAGAGATGCGTCACC 57.407 50.000 8.99 0.00 41.09 4.02
369 379 9.250624 CACAAACCCTAAACGAAATCATAAAAA 57.749 29.630 0.00 0.00 0.00 1.94
383 393 9.990360 GAAATCATAAAAACACCTAAAAAGGGA 57.010 29.630 0.00 0.00 0.00 4.20
387 397 5.887214 AAAAACACCTAAAAAGGGAGCAT 57.113 34.783 0.00 0.00 0.00 3.79
389 399 2.807676 ACACCTAAAAAGGGAGCATGG 58.192 47.619 0.00 0.00 0.00 3.66
401 411 4.489771 GCATGGTCCCTCCCACCG 62.490 72.222 0.00 0.00 37.31 4.94
421 431 4.342086 AAGGGCCGGGGTCTACCA 62.342 66.667 2.18 0.00 42.91 3.25
430 440 1.192428 GGGGTCTACCACGTCTTCAT 58.808 55.000 0.81 0.00 42.91 2.57
452 462 2.363795 CTAGGGCCACCGGAGACA 60.364 66.667 9.46 0.00 43.47 3.41
458 468 4.760047 CCACCGGAGACAAGGCGG 62.760 72.222 9.46 0.00 0.00 6.13
487 527 3.461773 CGCCGGTGGGAGTCAGAT 61.462 66.667 7.26 0.00 34.06 2.90
496 536 3.041946 GTGGGAGTCAGATGAACCCTAT 58.958 50.000 19.98 0.00 40.88 2.57
499 539 2.546795 GGAGTCAGATGAACCCTATGCG 60.547 54.545 0.00 0.00 0.00 4.73
524 566 7.904461 CGTACTTCTGTCTTTAGCTTACTAGTC 59.096 40.741 0.00 0.00 0.00 2.59
539 588 3.099905 ACTAGTCTGCCTCACATGCTTA 58.900 45.455 0.00 0.00 0.00 3.09
540 589 2.393271 AGTCTGCCTCACATGCTTAC 57.607 50.000 0.00 0.00 0.00 2.34
571 637 4.181578 GACCGCTTAAGTTCAGCTATTCA 58.818 43.478 7.42 0.00 34.88 2.57
723 792 5.063204 GGCAATCCATGTGCTATGTACTAA 58.937 41.667 6.72 0.00 41.88 2.24
780 850 7.182930 AGGAAAGTTGGAACTGGAGAGTATATT 59.817 37.037 0.00 0.00 39.66 1.28
803 873 7.687941 TTTGAAGGAAAGGAGATCACATTAC 57.312 36.000 0.00 0.00 0.00 1.89
857 927 3.426292 GCCGAATTTAGCTGTTCTTCACC 60.426 47.826 0.00 0.00 0.00 4.02
875 945 0.320946 CCTTTTCACTTACGGGCCGA 60.321 55.000 35.78 13.93 0.00 5.54
932 1002 5.586243 CCTATATAAACGATGCCATCCTTGG 59.414 44.000 0.00 0.00 46.66 3.61
965 1035 0.401738 TCCACAGCTTCCCTTCCTTG 59.598 55.000 0.00 0.00 0.00 3.61
989 1059 4.759782 CATCTCCGAACAAGTGGTAGATT 58.240 43.478 0.00 0.00 0.00 2.40
1014 1084 1.078497 CACAATGGCGCTCCTACCA 60.078 57.895 7.64 0.00 41.06 3.25
1023 1093 1.448013 GCTCCTACCACGGCTGTTC 60.448 63.158 0.00 0.00 0.00 3.18
1143 1213 3.316308 ACTGCACAAGGAAGAACATGAAC 59.684 43.478 0.00 0.00 0.00 3.18
1177 1247 7.486870 CAGCTTTCAAAGGTACGTAAACTTTTT 59.513 33.333 18.58 5.24 37.49 1.94
1196 1266 5.736486 TTTTTGAACACAGTACATACGCA 57.264 34.783 0.00 0.00 0.00 5.24
1197 1267 5.736486 TTTTGAACACAGTACATACGCAA 57.264 34.783 0.00 0.00 0.00 4.85
1199 1269 2.734606 TGAACACAGTACATACGCAAGC 59.265 45.455 0.00 0.00 45.62 4.01
1200 1270 1.346365 ACACAGTACATACGCAAGCG 58.654 50.000 13.50 13.50 46.03 4.68
1201 1271 0.025001 CACAGTACATACGCAAGCGC 59.975 55.000 15.09 0.00 44.19 5.92
1202 1272 0.108804 ACAGTACATACGCAAGCGCT 60.109 50.000 15.09 2.64 44.19 5.92
1203 1273 0.572590 CAGTACATACGCAAGCGCTC 59.427 55.000 12.06 0.00 44.19 5.03
1204 1274 0.172578 AGTACATACGCAAGCGCTCA 59.827 50.000 12.06 0.15 44.19 4.26
1205 1275 1.202417 AGTACATACGCAAGCGCTCAT 60.202 47.619 12.06 0.00 44.19 2.90
1206 1276 2.034179 AGTACATACGCAAGCGCTCATA 59.966 45.455 12.06 0.81 44.19 2.15
1207 1277 2.154854 ACATACGCAAGCGCTCATAT 57.845 45.000 12.06 3.50 44.19 1.78
1208 1278 3.297830 ACATACGCAAGCGCTCATATA 57.702 42.857 12.06 1.64 44.19 0.86
1209 1279 2.987149 ACATACGCAAGCGCTCATATAC 59.013 45.455 12.06 0.00 44.19 1.47
1210 1280 2.785713 TACGCAAGCGCTCATATACA 57.214 45.000 12.06 0.00 44.19 2.29
1211 1281 1.209128 ACGCAAGCGCTCATATACAC 58.791 50.000 12.06 0.00 44.19 2.90
1212 1282 0.159554 CGCAAGCGCTCATATACACG 59.840 55.000 12.06 2.00 35.30 4.49
1216 1286 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
1217 1287 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
1218 1288 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
1219 1289 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
1220 1290 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
1221 1291 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
1222 1292 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
1223 1293 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
1224 1294 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
1225 1295 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
1226 1296 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
1227 1297 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
1228 1298 2.184322 CGCGCATACACTCACCCT 59.816 61.111 8.75 0.00 0.00 4.34
1229 1299 1.317431 ACGCGCATACACTCACCCTA 61.317 55.000 5.73 0.00 0.00 3.53
1230 1300 0.032130 CGCGCATACACTCACCCTAT 59.968 55.000 8.75 0.00 0.00 2.57
1231 1301 1.502231 GCGCATACACTCACCCTATG 58.498 55.000 0.30 0.00 0.00 2.23
1232 1302 1.068588 GCGCATACACTCACCCTATGA 59.931 52.381 0.30 0.00 35.45 2.15
1233 1303 2.483013 GCGCATACACTCACCCTATGAA 60.483 50.000 0.30 0.00 36.69 2.57
1234 1304 3.123804 CGCATACACTCACCCTATGAAC 58.876 50.000 0.00 0.00 36.69 3.18
1235 1305 3.123804 GCATACACTCACCCTATGAACG 58.876 50.000 0.00 0.00 36.69 3.95
1236 1306 2.953466 TACACTCACCCTATGAACGC 57.047 50.000 0.00 0.00 36.69 4.84
1237 1307 0.108804 ACACTCACCCTATGAACGCG 60.109 55.000 3.53 3.53 36.69 6.01
1238 1308 1.153628 ACTCACCCTATGAACGCGC 60.154 57.895 5.73 0.00 36.69 6.86
1239 1309 1.153647 CTCACCCTATGAACGCGCA 60.154 57.895 5.73 0.00 36.69 6.09
1240 1310 1.421410 CTCACCCTATGAACGCGCAC 61.421 60.000 5.73 0.00 36.69 5.34
1241 1311 1.739929 CACCCTATGAACGCGCACA 60.740 57.895 5.73 7.23 0.00 4.57
1242 1312 1.740296 ACCCTATGAACGCGCACAC 60.740 57.895 5.73 0.00 0.00 3.82
1243 1313 1.739929 CCCTATGAACGCGCACACA 60.740 57.895 5.73 3.79 0.00 3.72
1244 1314 1.419922 CCTATGAACGCGCACACAC 59.580 57.895 5.73 0.00 0.00 3.82
1245 1315 1.419922 CTATGAACGCGCACACACC 59.580 57.895 5.73 0.00 0.00 4.16
1246 1316 1.966493 CTATGAACGCGCACACACCC 61.966 60.000 5.73 0.00 0.00 4.61
1247 1317 2.443260 TATGAACGCGCACACACCCT 62.443 55.000 5.73 0.00 0.00 4.34
1248 1318 2.356553 GAACGCGCACACACCCTA 60.357 61.111 5.73 0.00 0.00 3.53
1249 1319 2.663852 AACGCGCACACACCCTAC 60.664 61.111 5.73 0.00 0.00 3.18
1250 1320 4.675029 ACGCGCACACACCCTACC 62.675 66.667 5.73 0.00 0.00 3.18
1253 1323 3.319198 CGCACACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
1254 1324 1.985662 CGCACACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
1255 1325 1.335132 CGCACACACCCTACCCCTAT 61.335 60.000 0.00 0.00 0.00 2.57
1256 1326 0.180406 GCACACACCCTACCCCTATG 59.820 60.000 0.00 0.00 0.00 2.23
1257 1327 1.874129 CACACACCCTACCCCTATGA 58.126 55.000 0.00 0.00 0.00 2.15
1258 1328 1.762957 CACACACCCTACCCCTATGAG 59.237 57.143 0.00 0.00 0.00 2.90
1259 1329 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
1260 1330 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
1261 1331 1.061346 ACACCCTACCCCTATGAGCAT 60.061 52.381 0.00 0.00 0.00 3.79
1262 1332 1.625818 CACCCTACCCCTATGAGCATC 59.374 57.143 0.00 0.00 0.00 3.91
1263 1333 1.509961 ACCCTACCCCTATGAGCATCT 59.490 52.381 0.00 0.00 34.92 2.90
1264 1334 2.183679 CCCTACCCCTATGAGCATCTC 58.816 57.143 0.00 0.00 34.92 2.75
1265 1335 2.183679 CCTACCCCTATGAGCATCTCC 58.816 57.143 0.00 0.00 34.92 3.71
1266 1336 1.821753 CTACCCCTATGAGCATCTCCG 59.178 57.143 0.00 0.00 34.92 4.63
1267 1337 0.188587 ACCCCTATGAGCATCTCCGA 59.811 55.000 0.00 0.00 34.92 4.55
1268 1338 1.342074 CCCCTATGAGCATCTCCGAA 58.658 55.000 0.00 0.00 34.92 4.30
1269 1339 1.694150 CCCCTATGAGCATCTCCGAAA 59.306 52.381 0.00 0.00 34.92 3.46
1270 1340 2.289320 CCCCTATGAGCATCTCCGAAAG 60.289 54.545 0.00 0.00 34.92 2.62
1271 1341 2.630098 CCCTATGAGCATCTCCGAAAGA 59.370 50.000 0.00 0.00 38.72 2.52
1272 1342 3.553922 CCCTATGAGCATCTCCGAAAGAC 60.554 52.174 0.00 0.00 36.65 3.01
1273 1343 3.320541 CCTATGAGCATCTCCGAAAGACT 59.679 47.826 0.00 0.00 36.65 3.24
1274 1344 2.662006 TGAGCATCTCCGAAAGACTG 57.338 50.000 0.00 0.00 36.65 3.51
1275 1345 2.171003 TGAGCATCTCCGAAAGACTGA 58.829 47.619 0.00 0.00 36.65 3.41
1276 1346 2.165234 TGAGCATCTCCGAAAGACTGAG 59.835 50.000 0.00 0.00 36.65 3.35
1277 1347 1.134848 AGCATCTCCGAAAGACTGAGC 60.135 52.381 0.00 0.00 36.65 4.26
1278 1348 1.933247 CATCTCCGAAAGACTGAGCC 58.067 55.000 0.00 0.00 36.65 4.70
1279 1349 0.457851 ATCTCCGAAAGACTGAGCCG 59.542 55.000 0.00 0.00 36.65 5.52
1280 1350 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
1281 1351 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
1282 1352 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
1283 1353 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
1284 1354 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
1285 1355 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
1286 1356 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
1287 1357 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
1288 1358 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
1289 1359 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
1290 1360 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
1291 1361 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
1292 1362 2.899900 ACTGAGCCGGCATATCATCTTA 59.100 45.455 31.54 0.00 0.00 2.10
1293 1363 3.324846 ACTGAGCCGGCATATCATCTTAA 59.675 43.478 31.54 0.00 0.00 1.85
1294 1364 4.202357 ACTGAGCCGGCATATCATCTTAAA 60.202 41.667 31.54 0.00 0.00 1.52
1295 1365 4.713553 TGAGCCGGCATATCATCTTAAAA 58.286 39.130 31.54 0.00 0.00 1.52
1296 1366 5.316167 TGAGCCGGCATATCATCTTAAAAT 58.684 37.500 31.54 0.06 0.00 1.82
1297 1367 5.769662 TGAGCCGGCATATCATCTTAAAATT 59.230 36.000 31.54 0.00 0.00 1.82
1298 1368 6.265196 TGAGCCGGCATATCATCTTAAAATTT 59.735 34.615 31.54 0.00 0.00 1.82
1299 1369 7.446931 TGAGCCGGCATATCATCTTAAAATTTA 59.553 33.333 31.54 0.00 0.00 1.40
1300 1370 7.593825 AGCCGGCATATCATCTTAAAATTTAC 58.406 34.615 31.54 0.00 0.00 2.01
1301 1371 7.230510 AGCCGGCATATCATCTTAAAATTTACA 59.769 33.333 31.54 0.00 0.00 2.41
1302 1372 7.865385 GCCGGCATATCATCTTAAAATTTACAA 59.135 33.333 24.80 0.00 0.00 2.41
1303 1373 9.743057 CCGGCATATCATCTTAAAATTTACAAA 57.257 29.630 0.00 0.00 0.00 2.83
1310 1380 9.840427 ATCATCTTAAAATTTACAAAGTCACCG 57.160 29.630 0.00 0.00 0.00 4.94
1311 1381 8.842280 TCATCTTAAAATTTACAAAGTCACCGT 58.158 29.630 0.00 0.00 0.00 4.83
1326 1396 4.053067 CGTAGGCACTTCGTCGTC 57.947 61.111 0.00 0.00 44.10 4.20
1327 1397 1.862147 CGTAGGCACTTCGTCGTCG 60.862 63.158 0.00 0.00 44.10 5.12
1328 1398 1.499056 GTAGGCACTTCGTCGTCGA 59.501 57.895 0.00 0.00 44.66 4.20
1329 1399 0.792356 GTAGGCACTTCGTCGTCGAC 60.792 60.000 15.51 15.51 46.03 4.20
1351 1421 3.672767 GGAACGTCTTCTCCCACTAAA 57.327 47.619 0.00 0.00 0.00 1.85
1352 1422 4.203654 GGAACGTCTTCTCCCACTAAAT 57.796 45.455 0.00 0.00 0.00 1.40
1353 1423 3.933332 GGAACGTCTTCTCCCACTAAATG 59.067 47.826 0.00 0.00 0.00 2.32
1354 1424 2.973945 ACGTCTTCTCCCACTAAATGC 58.026 47.619 0.00 0.00 0.00 3.56
1355 1425 1.927174 CGTCTTCTCCCACTAAATGCG 59.073 52.381 0.00 0.00 0.00 4.73
1356 1426 1.666189 GTCTTCTCCCACTAAATGCGC 59.334 52.381 0.00 0.00 0.00 6.09
1357 1427 1.277842 TCTTCTCCCACTAAATGCGCA 59.722 47.619 14.96 14.96 0.00 6.09
1358 1428 2.092968 TCTTCTCCCACTAAATGCGCAT 60.093 45.455 19.28 19.28 0.00 4.73
1359 1429 1.953559 TCTCCCACTAAATGCGCATC 58.046 50.000 25.53 0.00 0.00 3.91
1360 1430 0.583438 CTCCCACTAAATGCGCATCG 59.417 55.000 25.53 17.09 0.00 3.84
1371 1441 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
1372 1442 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
1373 1443 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
1374 1444 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
1375 1445 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
1376 1446 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
1377 1447 3.734902 GCATCGCCGAAAATCCTGAAATT 60.735 43.478 0.00 0.00 0.00 1.82
1378 1448 4.497340 GCATCGCCGAAAATCCTGAAATTA 60.497 41.667 0.00 0.00 0.00 1.40
1379 1449 5.762045 CATCGCCGAAAATCCTGAAATTAT 58.238 37.500 0.00 0.00 0.00 1.28
1380 1450 5.828299 TCGCCGAAAATCCTGAAATTATT 57.172 34.783 0.00 0.00 0.00 1.40
1381 1451 5.816919 TCGCCGAAAATCCTGAAATTATTC 58.183 37.500 0.00 0.00 36.04 1.75
1382 1452 5.355630 TCGCCGAAAATCCTGAAATTATTCA 59.644 36.000 0.00 0.00 43.18 2.57
1383 1453 6.039270 TCGCCGAAAATCCTGAAATTATTCAT 59.961 34.615 0.00 0.00 44.29 2.57
1384 1454 6.142798 CGCCGAAAATCCTGAAATTATTCATG 59.857 38.462 0.00 0.00 44.29 3.07
1385 1455 7.202526 GCCGAAAATCCTGAAATTATTCATGA 58.797 34.615 0.00 0.00 44.29 3.07
1386 1456 7.706179 GCCGAAAATCCTGAAATTATTCATGAA 59.294 33.333 11.26 11.26 44.29 2.57
1387 1457 9.754382 CCGAAAATCCTGAAATTATTCATGAAT 57.246 29.630 23.75 23.75 44.29 2.57
1394 1464 9.681692 TCCTGAAATTATTCATGAATAAATGCG 57.318 29.630 33.52 22.42 44.29 4.73
1395 1465 9.681692 CCTGAAATTATTCATGAATAAATGCGA 57.318 29.630 33.52 17.81 44.29 5.10
1397 1467 9.184062 TGAAATTATTCATGAATAAATGCGAGC 57.816 29.630 33.52 21.63 43.83 5.03
1398 1468 9.184062 GAAATTATTCATGAATAAATGCGAGCA 57.816 29.630 33.52 16.01 43.83 4.26
1399 1469 8.511465 AATTATTCATGAATAAATGCGAGCAC 57.489 30.769 33.52 0.00 43.83 4.40
1400 1470 3.969117 TCATGAATAAATGCGAGCACC 57.031 42.857 0.00 0.00 0.00 5.01
1401 1471 3.277715 TCATGAATAAATGCGAGCACCA 58.722 40.909 0.00 0.00 0.00 4.17
1402 1472 3.313249 TCATGAATAAATGCGAGCACCAG 59.687 43.478 0.00 0.00 0.00 4.00
1403 1473 2.984562 TGAATAAATGCGAGCACCAGA 58.015 42.857 0.00 0.00 0.00 3.86
1404 1474 3.342719 TGAATAAATGCGAGCACCAGAA 58.657 40.909 0.00 0.00 0.00 3.02
1405 1475 3.126858 TGAATAAATGCGAGCACCAGAAC 59.873 43.478 0.00 0.00 0.00 3.01
1406 1476 2.472695 TAAATGCGAGCACCAGAACT 57.527 45.000 0.00 0.00 0.00 3.01
1407 1477 1.609208 AAATGCGAGCACCAGAACTT 58.391 45.000 0.00 0.00 0.00 2.66
1408 1478 0.877071 AATGCGAGCACCAGAACTTG 59.123 50.000 0.00 0.00 0.00 3.16
1409 1479 0.035317 ATGCGAGCACCAGAACTTGA 59.965 50.000 0.00 0.00 0.00 3.02
1410 1480 0.179059 TGCGAGCACCAGAACTTGAA 60.179 50.000 0.00 0.00 0.00 2.69
1411 1481 0.235926 GCGAGCACCAGAACTTGAAC 59.764 55.000 0.00 0.00 0.00 3.18
1412 1482 0.868406 CGAGCACCAGAACTTGAACC 59.132 55.000 0.00 0.00 0.00 3.62
1413 1483 0.868406 GAGCACCAGAACTTGAACCG 59.132 55.000 0.00 0.00 0.00 4.44
1414 1484 0.180406 AGCACCAGAACTTGAACCGT 59.820 50.000 0.00 0.00 0.00 4.83
1415 1485 0.307760 GCACCAGAACTTGAACCGTG 59.692 55.000 0.00 0.00 0.00 4.94
1416 1486 1.948104 CACCAGAACTTGAACCGTGA 58.052 50.000 0.00 0.00 0.00 4.35
1417 1487 2.494059 CACCAGAACTTGAACCGTGAT 58.506 47.619 0.00 0.00 0.00 3.06
1418 1488 2.224079 CACCAGAACTTGAACCGTGATG 59.776 50.000 0.00 0.00 0.00 3.07
1419 1489 1.806542 CCAGAACTTGAACCGTGATGG 59.193 52.381 0.00 0.00 46.41 3.51
1420 1490 1.806542 CAGAACTTGAACCGTGATGGG 59.193 52.381 0.00 0.00 44.64 4.00
1421 1491 0.521735 GAACTTGAACCGTGATGGGC 59.478 55.000 0.00 0.00 44.64 5.36
1422 1492 0.110486 AACTTGAACCGTGATGGGCT 59.890 50.000 0.00 0.00 44.64 5.19
1423 1493 0.606401 ACTTGAACCGTGATGGGCTG 60.606 55.000 0.00 0.00 44.64 4.85
1424 1494 1.303236 TTGAACCGTGATGGGCTGG 60.303 57.895 0.00 0.00 44.64 4.85
1425 1495 2.438434 GAACCGTGATGGGCTGGG 60.438 66.667 0.00 0.00 44.64 4.45
1426 1496 3.995506 GAACCGTGATGGGCTGGGG 62.996 68.421 0.00 0.00 44.64 4.96
1428 1498 3.492353 CCGTGATGGGCTGGGGAT 61.492 66.667 0.00 0.00 0.00 3.85
1429 1499 2.146724 CCGTGATGGGCTGGGGATA 61.147 63.158 0.00 0.00 0.00 2.59
1430 1500 1.071471 CGTGATGGGCTGGGGATAC 59.929 63.158 0.00 0.00 0.00 2.24
1447 1517 5.024785 GGATACCACAGTCCCTCTAAAAG 57.975 47.826 0.00 0.00 0.00 2.27
1448 1518 4.470304 GGATACCACAGTCCCTCTAAAAGT 59.530 45.833 0.00 0.00 0.00 2.66
1449 1519 5.659971 GGATACCACAGTCCCTCTAAAAGTA 59.340 44.000 0.00 0.00 0.00 2.24
1450 1520 4.886496 ACCACAGTCCCTCTAAAAGTAC 57.114 45.455 0.00 0.00 0.00 2.73
1476 1546 2.033299 AGACACACTGAATTTGCCAACG 59.967 45.455 0.00 0.00 0.00 4.10
1501 1571 4.154918 CGTCAAAGAAAAGCAGAGCCTAAT 59.845 41.667 0.00 0.00 0.00 1.73
1521 1591 6.489700 CCTAATTGGCCCTTTTTCAATTTGTT 59.510 34.615 0.00 0.00 40.33 2.83
1524 1594 7.686438 ATTGGCCCTTTTTCAATTTGTTATC 57.314 32.000 0.00 0.00 0.00 1.75
1525 1595 6.432403 TGGCCCTTTTTCAATTTGTTATCT 57.568 33.333 0.00 0.00 0.00 1.98
1526 1596 7.546250 TGGCCCTTTTTCAATTTGTTATCTA 57.454 32.000 0.00 0.00 0.00 1.98
1590 1660 1.507174 GGCGAGTACGAGAGCAAGT 59.493 57.895 0.00 0.00 42.66 3.16
1610 1680 2.197324 GTGGGGCCTGTGGACAAA 59.803 61.111 0.84 0.00 27.52 2.83
1817 1887 0.535780 TGCACCAACCTTCAGCTGAG 60.536 55.000 17.43 9.03 0.00 3.35
1900 1970 1.461268 TGACTGTCCCTCCCAAGCA 60.461 57.895 5.17 0.00 0.00 3.91
1902 1972 2.046892 CTGTCCCTCCCAAGCACG 60.047 66.667 0.00 0.00 0.00 5.34
1903 1973 2.525629 TGTCCCTCCCAAGCACGA 60.526 61.111 0.00 0.00 0.00 4.35
1904 1974 1.903877 CTGTCCCTCCCAAGCACGAT 61.904 60.000 0.00 0.00 0.00 3.73
1905 1975 1.153349 GTCCCTCCCAAGCACGATC 60.153 63.158 0.00 0.00 0.00 3.69
1906 1976 1.612146 TCCCTCCCAAGCACGATCA 60.612 57.895 0.00 0.00 0.00 2.92
1907 1977 0.982852 TCCCTCCCAAGCACGATCAT 60.983 55.000 0.00 0.00 0.00 2.45
1937 2007 0.108804 ACGACCACGACCATGATCAC 60.109 55.000 0.00 0.00 42.66 3.06
1949 2037 0.108804 ATGATCACGACCACGACCAC 60.109 55.000 0.00 0.00 42.66 4.16
1952 2040 1.592400 ATCACGACCACGACCACGAT 61.592 55.000 0.00 0.00 42.66 3.73
1973 2061 0.530650 ACGATCATGGCCACGATCAC 60.531 55.000 34.03 15.16 38.35 3.06
1986 2110 1.070510 ACGATCACGATCACGATCTCG 60.071 52.381 15.65 12.28 43.04 4.04
2213 2340 1.230324 GAGGTTGCTCGCTCTTTTGT 58.770 50.000 0.00 0.00 0.00 2.83
2251 2379 3.561725 AGTTCTTTTCACTCCTTTGCTCG 59.438 43.478 0.00 0.00 0.00 5.03
2313 2441 4.679654 GCGAGGACGATTGTTTTTCATTTT 59.320 37.500 0.00 0.00 42.66 1.82
2314 2442 5.174943 GCGAGGACGATTGTTTTTCATTTTT 59.825 36.000 0.00 0.00 42.66 1.94
2335 2463 0.976641 TGAACTGGATTGCGAGGACT 59.023 50.000 0.00 0.00 0.00 3.85
2354 2482 4.868734 GGACTATTGTTAGTTCGGTTGAGG 59.131 45.833 0.00 0.00 38.81 3.86
2391 2524 5.047590 TGGAGTAGTTCGATCTTGCTTGTTA 60.048 40.000 0.48 0.00 0.00 2.41
2404 2537 6.033341 TCTTGCTTGTTATGTGTGTTTGTTC 58.967 36.000 0.00 0.00 0.00 3.18
2418 2551 5.057149 GTGTTTGTTCCACTCTGATGTACT 58.943 41.667 0.00 0.00 0.00 2.73
2423 2556 4.830600 TGTTCCACTCTGATGTACTGTGTA 59.169 41.667 0.00 0.00 0.00 2.90
2424 2557 5.303333 TGTTCCACTCTGATGTACTGTGTAA 59.697 40.000 0.00 0.00 0.00 2.41
2426 2559 6.605471 TCCACTCTGATGTACTGTGTAAAT 57.395 37.500 0.00 0.00 0.00 1.40
2427 2560 6.398095 TCCACTCTGATGTACTGTGTAAATG 58.602 40.000 0.00 0.00 0.00 2.32
2428 2561 6.014584 TCCACTCTGATGTACTGTGTAAATGT 60.015 38.462 0.00 0.00 0.00 2.71
2429 2562 6.091305 CCACTCTGATGTACTGTGTAAATGTG 59.909 42.308 0.00 0.00 0.00 3.21
2430 2563 6.646653 CACTCTGATGTACTGTGTAAATGTGT 59.353 38.462 0.00 0.00 0.00 3.72
2431 2564 7.812669 CACTCTGATGTACTGTGTAAATGTGTA 59.187 37.037 0.00 0.00 0.00 2.90
2432 2565 8.364894 ACTCTGATGTACTGTGTAAATGTGTAA 58.635 33.333 0.00 0.00 0.00 2.41
2433 2566 9.371136 CTCTGATGTACTGTGTAAATGTGTAAT 57.629 33.333 0.00 0.00 0.00 1.89
2509 2642 1.345741 CTTCTGCCACTGACCTTCTCA 59.654 52.381 0.00 0.00 0.00 3.27
2545 2678 5.164620 TGAGATGCAACTTTGGTAGATGA 57.835 39.130 0.00 0.00 0.00 2.92
2556 2689 2.329267 TGGTAGATGAATGAGCGGGAT 58.671 47.619 0.00 0.00 0.00 3.85
2583 2716 7.433680 CCCAGAAAAACTTGCTTAACAGTTAT 58.566 34.615 0.00 0.00 0.00 1.89
2584 2717 7.926018 CCCAGAAAAACTTGCTTAACAGTTATT 59.074 33.333 0.00 0.00 0.00 1.40
2585 2718 8.755018 CCAGAAAAACTTGCTTAACAGTTATTG 58.245 33.333 0.00 0.00 0.00 1.90
2586 2719 9.301153 CAGAAAAACTTGCTTAACAGTTATTGT 57.699 29.630 0.00 0.00 43.45 2.71
2593 2726 9.284968 ACTTGCTTAACAGTTATTGTAAGATGT 57.715 29.630 20.77 6.81 39.73 3.06
2602 2735 9.730420 ACAGTTATTGTAAGATGTTTTTGACAC 57.270 29.630 0.00 0.00 38.67 3.67
2603 2736 9.950680 CAGTTATTGTAAGATGTTTTTGACACT 57.049 29.630 0.00 0.00 42.04 3.55
2613 2746 8.902540 AGATGTTTTTGACACTACATTAGTCA 57.097 30.769 0.00 0.00 42.04 3.41
2614 2747 8.774586 AGATGTTTTTGACACTACATTAGTCAC 58.225 33.333 0.00 0.00 42.04 3.67
2615 2748 6.939627 TGTTTTTGACACTACATTAGTCACG 58.060 36.000 0.00 0.00 41.53 4.35
2616 2749 6.535865 TGTTTTTGACACTACATTAGTCACGT 59.464 34.615 0.00 0.00 41.53 4.49
2617 2750 7.064847 TGTTTTTGACACTACATTAGTCACGTT 59.935 33.333 0.00 0.00 41.53 3.99
2618 2751 7.542534 TTTTGACACTACATTAGTCACGTTT 57.457 32.000 0.00 0.00 41.53 3.60
2619 2752 7.542534 TTTGACACTACATTAGTCACGTTTT 57.457 32.000 0.00 0.00 41.53 2.43
2620 2753 7.542534 TTGACACTACATTAGTCACGTTTTT 57.457 32.000 0.00 0.00 41.53 1.94
2659 2792 5.789710 AAACGTCTTACATTATGGAACGG 57.210 39.130 6.60 0.00 0.00 4.44
2660 2793 4.724074 ACGTCTTACATTATGGAACGGA 57.276 40.909 6.60 0.00 0.00 4.69
2661 2794 4.679662 ACGTCTTACATTATGGAACGGAG 58.320 43.478 6.60 0.00 0.00 4.63
2662 2795 3.489785 CGTCTTACATTATGGAACGGAGC 59.510 47.826 0.00 0.00 0.00 4.70
2663 2796 4.439057 GTCTTACATTATGGAACGGAGCA 58.561 43.478 0.00 0.00 0.00 4.26
2664 2797 4.508124 GTCTTACATTATGGAACGGAGCAG 59.492 45.833 0.00 0.00 0.00 4.24
2665 2798 4.404394 TCTTACATTATGGAACGGAGCAGA 59.596 41.667 0.00 0.00 0.00 4.26
2666 2799 3.185246 ACATTATGGAACGGAGCAGAG 57.815 47.619 0.00 0.00 0.00 3.35
2667 2800 2.501723 ACATTATGGAACGGAGCAGAGT 59.498 45.455 0.00 0.00 0.00 3.24
2668 2801 3.704566 ACATTATGGAACGGAGCAGAGTA 59.295 43.478 0.00 0.00 0.00 2.59
2669 2802 3.795623 TTATGGAACGGAGCAGAGTAC 57.204 47.619 0.00 0.00 0.00 2.73
2670 2803 0.824759 ATGGAACGGAGCAGAGTACC 59.175 55.000 0.00 0.00 0.00 3.34
2671 2804 0.541063 TGGAACGGAGCAGAGTACCA 60.541 55.000 0.00 0.00 0.00 3.25
2719 2852 2.526873 ACGTCCTGCCCCACTTCT 60.527 61.111 0.00 0.00 0.00 2.85
2721 2854 2.883828 CGTCCTGCCCCACTTCTGT 61.884 63.158 0.00 0.00 0.00 3.41
2748 2881 6.925165 CGTACAGTTTAAGGTTCTGGACTAAA 59.075 38.462 0.00 0.00 39.90 1.85
2764 2905 5.169295 GGACTAAACTATTCGCAGTTCAGT 58.831 41.667 1.25 1.25 39.29 3.41
2779 2923 7.013369 TCGCAGTTCAGTACATATATCAACTCT 59.987 37.037 0.00 0.00 0.00 3.24
2815 2959 8.182881 CAGTCCACACTACTCACTAAATACTAC 58.817 40.741 0.00 0.00 0.00 2.73
2823 2967 3.902467 CTCACTAAATACTACCCCCTCCC 59.098 52.174 0.00 0.00 0.00 4.30
2848 2992 2.643551 CCCTGTGTTTCCGCAAGATAT 58.356 47.619 0.00 0.00 43.02 1.63
2856 3000 4.137543 GTTTCCGCAAGATATGGGAAGAT 58.862 43.478 0.00 0.00 44.39 2.40
2884 3028 8.423349 TGTTTCAAAATTTCACTCAGATCCATT 58.577 29.630 0.00 0.00 0.00 3.16
2889 3033 9.784680 CAAAATTTCACTCAGATCCATTAAGAG 57.215 33.333 0.00 0.00 0.00 2.85
2890 3034 8.517062 AAATTTCACTCAGATCCATTAAGAGG 57.483 34.615 0.00 0.00 0.00 3.69
2898 3042 8.943085 ACTCAGATCCATTAAGAGGTAATCAAT 58.057 33.333 0.00 0.00 29.38 2.57
3040 3184 6.343616 GCAAGTAAAACGTGTTACAACAATCG 60.344 38.462 26.39 10.18 41.21 3.34
3052 3196 2.096417 ACAACAATCGTACGAAGCAAGC 60.096 45.455 23.56 0.00 0.00 4.01
3056 3201 3.930229 ACAATCGTACGAAGCAAGCATAA 59.070 39.130 23.56 0.00 0.00 1.90
3084 3229 6.229936 ACCTTCTTATACAGAAATACGGCA 57.770 37.500 0.00 0.00 41.25 5.69
3105 3250 1.079127 ATCAACTGACCCTTCGGCG 60.079 57.895 0.00 0.00 0.00 6.46
3108 3253 0.736325 CAACTGACCCTTCGGCGTAG 60.736 60.000 6.85 6.68 0.00 3.51
3157 3302 1.267806 ACTCAAATGAAACGCTGGCAG 59.732 47.619 10.94 10.94 0.00 4.85
3166 3311 1.172812 AACGCTGGCAGGAGAAAACC 61.173 55.000 17.64 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.200337 AACAAGTTTGGCCCGGCTC 61.200 57.895 9.86 0.00 0.00 4.70
34 35 6.537301 TCCAACTGTCTACTACAACAAGTTTG 59.463 38.462 0.00 0.00 37.74 2.93
56 57 1.336517 CCTTAGCACGACGACTTTCCA 60.337 52.381 0.00 0.00 0.00 3.53
82 83 3.535629 TTCTGGTGCGCTGGTCCTG 62.536 63.158 9.73 10.05 0.00 3.86
111 112 5.562890 CGATGTATACTTCTCTTCATCGGCA 60.563 44.000 14.75 0.00 45.61 5.69
131 132 4.389077 GTCTACAGGTTGGTTCTTTCGATG 59.611 45.833 0.00 0.00 0.00 3.84
158 160 3.985279 TGTTTGTATCCAGTCTTCGTTCG 59.015 43.478 0.00 0.00 0.00 3.95
174 182 4.728772 TGGTCTTTGATGGATCTGTTTGT 58.271 39.130 0.00 0.00 0.00 2.83
201 209 5.508657 CGATAGATCTTGCAGGATTCAGTCA 60.509 44.000 13.14 0.00 39.76 3.41
215 223 3.886505 GAGGTGTGTCTCCGATAGATCTT 59.113 47.826 0.00 0.00 36.36 2.40
255 263 1.951209 TTCTGGTGATGGGTCTAGCA 58.049 50.000 0.00 0.00 0.00 3.49
263 271 2.440627 TCTGATCCCATTCTGGTGATGG 59.559 50.000 0.00 0.00 35.17 3.51
271 279 1.060323 TCCCCCATCTGATCCCATTCT 60.060 52.381 0.00 0.00 0.00 2.40
275 283 1.355718 GCTTCCCCCATCTGATCCCA 61.356 60.000 0.00 0.00 0.00 4.37
279 289 3.075134 GGAATAAGCTTCCCCCATCTGAT 59.925 47.826 0.00 0.00 32.48 2.90
281 291 2.175499 TGGAATAAGCTTCCCCCATCTG 59.825 50.000 0.00 0.00 37.79 2.90
282 292 2.502745 TGGAATAAGCTTCCCCCATCT 58.497 47.619 0.00 0.00 37.79 2.90
284 294 3.066704 AGATGGAATAAGCTTCCCCCAT 58.933 45.455 19.95 19.95 37.79 4.00
285 295 2.502745 AGATGGAATAAGCTTCCCCCA 58.497 47.619 0.00 9.18 37.79 4.96
289 299 5.923204 TCTCTGAAGATGGAATAAGCTTCC 58.077 41.667 0.00 0.00 36.74 3.46
321 331 1.993370 CCTACTCACGAAAAGAAGGCG 59.007 52.381 0.00 0.00 0.00 5.52
326 336 4.659111 TTGTGTCCTACTCACGAAAAGA 57.341 40.909 0.00 0.00 38.48 2.52
327 337 4.025145 GGTTTGTGTCCTACTCACGAAAAG 60.025 45.833 0.00 0.00 39.76 2.27
329 339 3.460103 GGTTTGTGTCCTACTCACGAAA 58.540 45.455 0.00 0.00 39.76 3.46
369 379 2.110011 ACCATGCTCCCTTTTTAGGTGT 59.890 45.455 0.00 0.00 0.00 4.16
383 393 3.017581 GGTGGGAGGGACCATGCT 61.018 66.667 0.00 0.00 43.59 3.79
389 399 4.410400 CTTGCCGGTGGGAGGGAC 62.410 72.222 1.90 0.00 34.06 4.46
409 419 1.941999 GAAGACGTGGTAGACCCCGG 61.942 65.000 8.45 0.00 32.95 5.73
411 421 1.134788 CATGAAGACGTGGTAGACCCC 60.135 57.143 0.00 0.00 34.29 4.95
421 431 1.338136 CCCTAGGGCCATGAAGACGT 61.338 60.000 16.90 0.00 0.00 4.34
446 456 4.452733 CCGGTCCGCCTTGTCTCC 62.453 72.222 5.50 0.00 0.00 3.71
476 486 2.940514 TAGGGTTCATCTGACTCCCA 57.059 50.000 16.85 5.60 39.44 4.37
487 527 2.829720 ACAGAAGTACGCATAGGGTTCA 59.170 45.455 0.00 0.00 0.00 3.18
496 536 3.936372 AGCTAAAGACAGAAGTACGCA 57.064 42.857 0.00 0.00 0.00 5.24
499 539 8.949177 AGACTAGTAAGCTAAAGACAGAAGTAC 58.051 37.037 0.00 0.00 0.00 2.73
524 566 2.430465 ACTTGTAAGCATGTGAGGCAG 58.570 47.619 0.00 0.00 32.65 4.85
539 588 5.761234 TGAACTTAAGCGGTCATTAACTTGT 59.239 36.000 1.29 0.00 0.00 3.16
540 589 6.236017 TGAACTTAAGCGGTCATTAACTTG 57.764 37.500 1.29 0.00 0.00 3.16
571 637 5.772521 ACAAAGCGCAAATACTGAAAAGAT 58.227 33.333 11.47 0.00 0.00 2.40
640 709 7.598869 GGAGGGTGAATGAAAGATTTTAACAAC 59.401 37.037 0.00 0.00 0.00 3.32
723 792 3.364964 CCGTTAAATGCTCAAGCGAAGTT 60.365 43.478 0.00 0.00 45.83 2.66
780 850 5.874810 CGTAATGTGATCTCCTTTCCTTCAA 59.125 40.000 0.00 0.00 0.00 2.69
803 873 2.097396 CAGATTAGCCATTAACGTCGCG 60.097 50.000 0.00 0.00 0.00 5.87
857 927 1.664151 GATCGGCCCGTAAGTGAAAAG 59.336 52.381 1.63 0.00 0.00 2.27
932 1002 0.106569 TGTGGATGGATGGATGTGGC 60.107 55.000 0.00 0.00 0.00 5.01
965 1035 0.321653 ACCACTTGTTCGGAGATGCC 60.322 55.000 0.00 0.00 35.04 4.40
1014 1084 2.030562 CCGAACAGGAACAGCCGT 59.969 61.111 0.00 0.00 45.00 5.68
1023 1093 2.556287 GCGCAAACTCCGAACAGG 59.444 61.111 0.30 0.00 42.97 4.00
1143 1213 2.518836 CTTTGAAAGCTGCCTCGGCG 62.519 60.000 0.00 0.00 45.51 6.46
1177 1247 3.185594 GCTTGCGTATGTACTGTGTTCAA 59.814 43.478 0.00 0.00 0.00 2.69
1178 1248 2.734606 GCTTGCGTATGTACTGTGTTCA 59.265 45.455 0.00 0.00 0.00 3.18
1179 1249 2.222508 CGCTTGCGTATGTACTGTGTTC 60.223 50.000 6.86 0.00 0.00 3.18
1180 1250 1.724623 CGCTTGCGTATGTACTGTGTT 59.275 47.619 6.86 0.00 0.00 3.32
1181 1251 1.346365 CGCTTGCGTATGTACTGTGT 58.654 50.000 6.86 0.00 0.00 3.72
1182 1252 0.025001 GCGCTTGCGTATGTACTGTG 59.975 55.000 16.38 0.00 0.00 3.66
1183 1253 0.108804 AGCGCTTGCGTATGTACTGT 60.109 50.000 16.38 0.00 45.69 3.55
1184 1254 0.572590 GAGCGCTTGCGTATGTACTG 59.427 55.000 13.26 0.00 45.69 2.74
1185 1255 0.172578 TGAGCGCTTGCGTATGTACT 59.827 50.000 13.26 3.73 45.69 2.73
1186 1256 1.209128 ATGAGCGCTTGCGTATGTAC 58.791 50.000 13.26 0.00 45.69 2.90
1187 1257 2.785713 TATGAGCGCTTGCGTATGTA 57.214 45.000 13.26 3.16 45.69 2.29
1188 1258 2.154854 ATATGAGCGCTTGCGTATGT 57.845 45.000 13.26 5.01 45.69 2.29
1189 1259 2.986479 TGTATATGAGCGCTTGCGTATG 59.014 45.455 13.26 0.00 45.69 2.39
1190 1260 2.987149 GTGTATATGAGCGCTTGCGTAT 59.013 45.455 13.26 13.43 45.69 3.06
1191 1261 2.390938 GTGTATATGAGCGCTTGCGTA 58.609 47.619 13.26 5.86 45.69 4.42
1192 1262 1.209128 GTGTATATGAGCGCTTGCGT 58.791 50.000 13.26 3.24 45.69 5.24
1193 1263 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
1194 1264 0.111089 GCGTGTATATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
1195 1265 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
1196 1266 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
1197 1267 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
1200 1270 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
1201 1271 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
1202 1272 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
1203 1273 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
1204 1274 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
1205 1275 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
1206 1276 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
1207 1277 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
1208 1278 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
1209 1279 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
1210 1280 1.317431 TAGGGTGAGTGTATGCGCGT 61.317 55.000 8.43 7.55 0.00 6.01
1211 1281 0.032130 ATAGGGTGAGTGTATGCGCG 59.968 55.000 0.00 0.00 0.00 6.86
1212 1282 1.068588 TCATAGGGTGAGTGTATGCGC 59.931 52.381 0.00 0.00 31.80 6.09
1213 1283 3.123804 GTTCATAGGGTGAGTGTATGCG 58.876 50.000 0.00 0.00 38.29 4.73
1214 1284 3.123804 CGTTCATAGGGTGAGTGTATGC 58.876 50.000 0.00 0.00 38.29 3.14
1215 1285 3.123804 GCGTTCATAGGGTGAGTGTATG 58.876 50.000 0.00 0.00 38.29 2.39
1216 1286 2.223735 CGCGTTCATAGGGTGAGTGTAT 60.224 50.000 0.00 0.00 38.29 2.29
1217 1287 1.133598 CGCGTTCATAGGGTGAGTGTA 59.866 52.381 0.00 0.00 38.29 2.90
1218 1288 0.108804 CGCGTTCATAGGGTGAGTGT 60.109 55.000 0.00 0.00 38.29 3.55
1219 1289 1.421410 GCGCGTTCATAGGGTGAGTG 61.421 60.000 8.43 0.00 38.29 3.51
1220 1290 1.153628 GCGCGTTCATAGGGTGAGT 60.154 57.895 8.43 0.00 38.29 3.41
1221 1291 1.153647 TGCGCGTTCATAGGGTGAG 60.154 57.895 8.43 0.00 38.29 3.51
1222 1292 1.447140 GTGCGCGTTCATAGGGTGA 60.447 57.895 8.43 0.00 34.25 4.02
1223 1293 1.739929 TGTGCGCGTTCATAGGGTG 60.740 57.895 8.43 0.00 0.00 4.61
1224 1294 1.740296 GTGTGCGCGTTCATAGGGT 60.740 57.895 8.43 0.00 0.00 4.34
1225 1295 1.739929 TGTGTGCGCGTTCATAGGG 60.740 57.895 8.43 0.00 0.00 3.53
1226 1296 1.419922 GTGTGTGCGCGTTCATAGG 59.580 57.895 8.43 0.00 0.00 2.57
1227 1297 1.419922 GGTGTGTGCGCGTTCATAG 59.580 57.895 8.43 0.00 0.00 2.23
1228 1298 2.030401 GGGTGTGTGCGCGTTCATA 61.030 57.895 8.43 2.84 0.00 2.15
1229 1299 2.443260 TAGGGTGTGTGCGCGTTCAT 62.443 55.000 8.43 0.00 0.00 2.57
1230 1300 3.153270 TAGGGTGTGTGCGCGTTCA 62.153 57.895 8.43 4.43 0.00 3.18
1231 1301 2.356553 TAGGGTGTGTGCGCGTTC 60.357 61.111 8.43 1.34 0.00 3.95
1232 1302 2.663852 GTAGGGTGTGTGCGCGTT 60.664 61.111 8.43 0.00 0.00 4.84
1233 1303 4.675029 GGTAGGGTGTGTGCGCGT 62.675 66.667 8.43 0.00 0.00 6.01
1236 1306 1.335132 ATAGGGGTAGGGTGTGTGCG 61.335 60.000 0.00 0.00 0.00 5.34
1237 1307 0.180406 CATAGGGGTAGGGTGTGTGC 59.820 60.000 0.00 0.00 0.00 4.57
1238 1308 1.762957 CTCATAGGGGTAGGGTGTGTG 59.237 57.143 0.00 0.00 0.00 3.82
1239 1309 1.970226 GCTCATAGGGGTAGGGTGTGT 60.970 57.143 0.00 0.00 0.00 3.72
1240 1310 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
1241 1311 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
1242 1312 1.625818 GATGCTCATAGGGGTAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
1243 1313 1.509961 AGATGCTCATAGGGGTAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
1244 1314 2.183679 GAGATGCTCATAGGGGTAGGG 58.816 57.143 0.00 0.00 0.00 3.53
1245 1315 2.183679 GGAGATGCTCATAGGGGTAGG 58.816 57.143 0.00 0.00 31.08 3.18
1246 1316 1.821753 CGGAGATGCTCATAGGGGTAG 59.178 57.143 0.00 0.00 31.08 3.18
1247 1317 1.427753 TCGGAGATGCTCATAGGGGTA 59.572 52.381 0.00 0.00 31.08 3.69
1248 1318 0.188587 TCGGAGATGCTCATAGGGGT 59.811 55.000 0.00 0.00 31.08 4.95
1249 1319 1.342074 TTCGGAGATGCTCATAGGGG 58.658 55.000 0.00 0.00 35.04 4.79
1250 1320 2.630098 TCTTTCGGAGATGCTCATAGGG 59.370 50.000 0.00 0.00 35.04 3.53
1251 1321 3.320541 AGTCTTTCGGAGATGCTCATAGG 59.679 47.826 0.00 0.00 36.61 2.57
1252 1322 4.037327 TCAGTCTTTCGGAGATGCTCATAG 59.963 45.833 0.00 0.00 36.61 2.23
1253 1323 3.954258 TCAGTCTTTCGGAGATGCTCATA 59.046 43.478 0.00 0.00 36.61 2.15
1254 1324 2.762887 TCAGTCTTTCGGAGATGCTCAT 59.237 45.455 0.00 0.00 36.61 2.90
1255 1325 2.165234 CTCAGTCTTTCGGAGATGCTCA 59.835 50.000 0.00 0.00 40.01 4.26
1256 1326 2.808244 CTCAGTCTTTCGGAGATGCTC 58.192 52.381 0.00 0.00 40.01 4.26
1257 1327 1.134848 GCTCAGTCTTTCGGAGATGCT 60.135 52.381 0.00 0.00 40.01 3.79
1258 1328 1.285578 GCTCAGTCTTTCGGAGATGC 58.714 55.000 0.00 0.00 40.01 3.91
1259 1329 1.800655 CGGCTCAGTCTTTCGGAGATG 60.801 57.143 0.00 0.00 40.01 2.90
1260 1330 0.457851 CGGCTCAGTCTTTCGGAGAT 59.542 55.000 0.00 0.00 40.01 2.75
1261 1331 1.595993 CCGGCTCAGTCTTTCGGAGA 61.596 60.000 0.00 0.00 42.94 3.71
1262 1332 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
1263 1333 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
1264 1334 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
1265 1335 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
1266 1336 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
1267 1337 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
1268 1338 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
1269 1339 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
1270 1340 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
1271 1341 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
1272 1342 2.469274 AAGATGATATGCCGGCTCAG 57.531 50.000 29.70 0.00 0.00 3.35
1273 1343 4.350368 TTTAAGATGATATGCCGGCTCA 57.650 40.909 29.70 23.34 0.00 4.26
1274 1344 5.886960 ATTTTAAGATGATATGCCGGCTC 57.113 39.130 29.70 17.89 0.00 4.70
1275 1345 6.655078 AAATTTTAAGATGATATGCCGGCT 57.345 33.333 29.70 15.76 0.00 5.52
1276 1346 7.367285 TGTAAATTTTAAGATGATATGCCGGC 58.633 34.615 22.73 22.73 0.00 6.13
1277 1347 9.743057 TTTGTAAATTTTAAGATGATATGCCGG 57.257 29.630 0.00 0.00 0.00 6.13
1284 1354 9.840427 CGGTGACTTTGTAAATTTTAAGATGAT 57.160 29.630 0.00 0.00 0.00 2.45
1285 1355 8.842280 ACGGTGACTTTGTAAATTTTAAGATGA 58.158 29.630 0.00 0.00 0.00 2.92
1288 1358 8.776470 CCTACGGTGACTTTGTAAATTTTAAGA 58.224 33.333 0.00 0.00 0.00 2.10
1289 1359 7.536281 GCCTACGGTGACTTTGTAAATTTTAAG 59.464 37.037 0.00 1.26 0.00 1.85
1290 1360 7.013083 TGCCTACGGTGACTTTGTAAATTTTAA 59.987 33.333 0.00 0.00 0.00 1.52
1291 1361 6.485984 TGCCTACGGTGACTTTGTAAATTTTA 59.514 34.615 0.00 0.00 0.00 1.52
1292 1362 5.299782 TGCCTACGGTGACTTTGTAAATTTT 59.700 36.000 0.00 0.00 0.00 1.82
1293 1363 4.822896 TGCCTACGGTGACTTTGTAAATTT 59.177 37.500 0.00 0.00 0.00 1.82
1294 1364 4.214758 GTGCCTACGGTGACTTTGTAAATT 59.785 41.667 0.00 0.00 0.00 1.82
1295 1365 3.749609 GTGCCTACGGTGACTTTGTAAAT 59.250 43.478 0.00 0.00 0.00 1.40
1296 1366 3.132925 GTGCCTACGGTGACTTTGTAAA 58.867 45.455 0.00 0.00 0.00 2.01
1297 1367 2.366266 AGTGCCTACGGTGACTTTGTAA 59.634 45.455 0.00 0.00 0.00 2.41
1298 1368 1.965643 AGTGCCTACGGTGACTTTGTA 59.034 47.619 0.00 0.00 0.00 2.41
1299 1369 0.756903 AGTGCCTACGGTGACTTTGT 59.243 50.000 0.00 0.00 0.00 2.83
1300 1370 1.798813 GAAGTGCCTACGGTGACTTTG 59.201 52.381 0.00 0.00 31.13 2.77
1301 1371 1.604693 CGAAGTGCCTACGGTGACTTT 60.605 52.381 0.00 0.00 31.13 2.66
1302 1372 0.038526 CGAAGTGCCTACGGTGACTT 60.039 55.000 0.00 0.00 32.76 3.01
1303 1373 1.177256 ACGAAGTGCCTACGGTGACT 61.177 55.000 0.00 0.00 42.51 3.41
1304 1374 1.288127 ACGAAGTGCCTACGGTGAC 59.712 57.895 0.00 0.00 42.51 3.67
1305 1375 3.767816 ACGAAGTGCCTACGGTGA 58.232 55.556 0.00 0.00 42.51 4.02
1331 1401 3.672767 TTTAGTGGGAGAAGACGTTCC 57.327 47.619 0.00 0.00 32.48 3.62
1332 1402 3.371285 GCATTTAGTGGGAGAAGACGTTC 59.629 47.826 0.00 0.00 0.00 3.95
1333 1403 3.335579 GCATTTAGTGGGAGAAGACGTT 58.664 45.455 0.00 0.00 0.00 3.99
1334 1404 2.674177 CGCATTTAGTGGGAGAAGACGT 60.674 50.000 0.00 0.00 43.02 4.34
1335 1405 1.927174 CGCATTTAGTGGGAGAAGACG 59.073 52.381 0.00 0.00 43.02 4.18
1336 1406 1.666189 GCGCATTTAGTGGGAGAAGAC 59.334 52.381 0.30 0.00 43.02 3.01
1337 1407 1.277842 TGCGCATTTAGTGGGAGAAGA 59.722 47.619 5.66 0.00 43.02 2.87
1338 1408 1.737838 TGCGCATTTAGTGGGAGAAG 58.262 50.000 5.66 0.00 43.02 2.85
1339 1409 2.288666 GATGCGCATTTAGTGGGAGAA 58.711 47.619 26.12 0.00 43.02 2.87
1340 1410 1.806247 CGATGCGCATTTAGTGGGAGA 60.806 52.381 26.12 0.00 43.02 3.71
1341 1411 0.583438 CGATGCGCATTTAGTGGGAG 59.417 55.000 26.12 4.12 43.02 4.30
1342 1412 2.689083 CGATGCGCATTTAGTGGGA 58.311 52.632 26.12 0.00 43.02 4.37
1354 1424 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
1355 1425 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
1356 1426 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
1357 1427 6.039270 TGAATAATTTCAGGATTTTCGGCGAT 59.961 34.615 11.76 0.00 36.94 4.58
1358 1428 5.355630 TGAATAATTTCAGGATTTTCGGCGA 59.644 36.000 4.99 4.99 36.94 5.54
1359 1429 5.577835 TGAATAATTTCAGGATTTTCGGCG 58.422 37.500 0.00 0.00 36.94 6.46
1360 1430 7.202526 TCATGAATAATTTCAGGATTTTCGGC 58.797 34.615 0.00 0.00 45.05 5.54
1369 1439 9.681692 TCGCATTTATTCATGAATAATTTCAGG 57.318 29.630 31.56 22.30 44.75 3.86
1371 1441 9.184062 GCTCGCATTTATTCATGAATAATTTCA 57.816 29.630 31.56 21.35 45.57 2.69
1372 1442 9.184062 TGCTCGCATTTATTCATGAATAATTTC 57.816 29.630 31.56 23.32 41.34 2.17
1373 1443 8.971321 GTGCTCGCATTTATTCATGAATAATTT 58.029 29.630 31.56 22.38 41.34 1.82
1374 1444 7.596248 GGTGCTCGCATTTATTCATGAATAATT 59.404 33.333 31.56 26.38 41.34 1.40
1375 1445 7.086376 GGTGCTCGCATTTATTCATGAATAAT 58.914 34.615 31.56 21.65 41.34 1.28
1376 1446 6.039159 TGGTGCTCGCATTTATTCATGAATAA 59.961 34.615 28.93 28.93 40.39 1.40
1377 1447 5.530543 TGGTGCTCGCATTTATTCATGAATA 59.469 36.000 21.67 21.67 32.50 1.75
1378 1448 4.338964 TGGTGCTCGCATTTATTCATGAAT 59.661 37.500 23.75 23.75 34.93 2.57
1379 1449 3.693578 TGGTGCTCGCATTTATTCATGAA 59.306 39.130 11.26 11.26 0.00 2.57
1380 1450 3.277715 TGGTGCTCGCATTTATTCATGA 58.722 40.909 0.00 0.00 0.00 3.07
1381 1451 3.313249 TCTGGTGCTCGCATTTATTCATG 59.687 43.478 0.00 0.00 0.00 3.07
1382 1452 3.544684 TCTGGTGCTCGCATTTATTCAT 58.455 40.909 0.00 0.00 0.00 2.57
1383 1453 2.984562 TCTGGTGCTCGCATTTATTCA 58.015 42.857 0.00 0.00 0.00 2.57
1384 1454 3.375299 AGTTCTGGTGCTCGCATTTATTC 59.625 43.478 0.00 0.00 0.00 1.75
1385 1455 3.347216 AGTTCTGGTGCTCGCATTTATT 58.653 40.909 0.00 0.00 0.00 1.40
1386 1456 2.991250 AGTTCTGGTGCTCGCATTTAT 58.009 42.857 0.00 0.00 0.00 1.40
1387 1457 2.472695 AGTTCTGGTGCTCGCATTTA 57.527 45.000 0.00 0.00 0.00 1.40
1388 1458 1.267806 CAAGTTCTGGTGCTCGCATTT 59.732 47.619 0.00 0.00 0.00 2.32
1389 1459 0.877071 CAAGTTCTGGTGCTCGCATT 59.123 50.000 0.00 0.00 0.00 3.56
1390 1460 0.035317 TCAAGTTCTGGTGCTCGCAT 59.965 50.000 0.00 0.00 0.00 4.73
1391 1461 0.179059 TTCAAGTTCTGGTGCTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
1392 1462 0.235926 GTTCAAGTTCTGGTGCTCGC 59.764 55.000 0.00 0.00 0.00 5.03
1393 1463 0.868406 GGTTCAAGTTCTGGTGCTCG 59.132 55.000 0.00 0.00 0.00 5.03
1394 1464 0.868406 CGGTTCAAGTTCTGGTGCTC 59.132 55.000 0.00 0.00 0.00 4.26
1395 1465 0.180406 ACGGTTCAAGTTCTGGTGCT 59.820 50.000 0.00 0.00 0.00 4.40
1396 1466 0.307760 CACGGTTCAAGTTCTGGTGC 59.692 55.000 0.00 0.00 0.00 5.01
1397 1467 1.948104 TCACGGTTCAAGTTCTGGTG 58.052 50.000 0.00 0.00 0.00 4.17
1398 1468 2.494059 CATCACGGTTCAAGTTCTGGT 58.506 47.619 0.00 0.00 0.00 4.00
1399 1469 1.806542 CCATCACGGTTCAAGTTCTGG 59.193 52.381 0.00 0.00 0.00 3.86
1400 1470 1.806542 CCCATCACGGTTCAAGTTCTG 59.193 52.381 0.00 0.00 0.00 3.02
1401 1471 1.882352 GCCCATCACGGTTCAAGTTCT 60.882 52.381 0.00 0.00 0.00 3.01
1402 1472 0.521735 GCCCATCACGGTTCAAGTTC 59.478 55.000 0.00 0.00 0.00 3.01
1403 1473 0.110486 AGCCCATCACGGTTCAAGTT 59.890 50.000 0.00 0.00 0.00 2.66
1404 1474 0.606401 CAGCCCATCACGGTTCAAGT 60.606 55.000 0.00 0.00 0.00 3.16
1405 1475 1.308069 CCAGCCCATCACGGTTCAAG 61.308 60.000 0.00 0.00 0.00 3.02
1406 1476 1.303236 CCAGCCCATCACGGTTCAA 60.303 57.895 0.00 0.00 0.00 2.69
1407 1477 2.350895 CCAGCCCATCACGGTTCA 59.649 61.111 0.00 0.00 0.00 3.18
1408 1478 2.438434 CCCAGCCCATCACGGTTC 60.438 66.667 0.00 0.00 0.00 3.62
1409 1479 4.047125 CCCCAGCCCATCACGGTT 62.047 66.667 0.00 0.00 0.00 4.44
1410 1480 2.907482 TATCCCCAGCCCATCACGGT 62.907 60.000 0.00 0.00 0.00 4.83
1411 1481 2.146724 TATCCCCAGCCCATCACGG 61.147 63.158 0.00 0.00 0.00 4.94
1412 1482 1.071471 GTATCCCCAGCCCATCACG 59.929 63.158 0.00 0.00 0.00 4.35
1413 1483 1.352622 TGGTATCCCCAGCCCATCAC 61.353 60.000 0.00 0.00 38.72 3.06
1414 1484 1.005423 TGGTATCCCCAGCCCATCA 59.995 57.895 0.00 0.00 38.72 3.07
1415 1485 1.352622 TGTGGTATCCCCAGCCCATC 61.353 60.000 0.00 0.00 46.45 3.51
1416 1486 1.308657 TGTGGTATCCCCAGCCCAT 60.309 57.895 0.00 0.00 46.45 4.00
1417 1487 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
1418 1488 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
1419 1489 1.527370 GACTGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
1420 1490 1.527370 GGACTGTGGTATCCCCAGC 59.473 63.158 0.00 0.00 46.45 4.85
1425 1495 4.470304 ACTTTTAGAGGGACTGTGGTATCC 59.530 45.833 0.00 0.00 41.55 2.59
1426 1496 5.678955 ACTTTTAGAGGGACTGTGGTATC 57.321 43.478 0.00 0.00 41.55 2.24
1427 1497 6.262207 AGTACTTTTAGAGGGACTGTGGTAT 58.738 40.000 0.00 0.00 41.55 2.73
1428 1498 5.648247 AGTACTTTTAGAGGGACTGTGGTA 58.352 41.667 0.00 0.00 41.55 3.25
1429 1499 4.490706 AGTACTTTTAGAGGGACTGTGGT 58.509 43.478 0.00 0.00 41.55 4.16
1430 1500 5.485209 AAGTACTTTTAGAGGGACTGTGG 57.515 43.478 1.12 0.00 41.55 4.17
1445 1515 8.129211 GCAAATTCAGTGTGTCTAAAAGTACTT 58.871 33.333 1.12 1.12 0.00 2.24
1446 1516 7.255139 GGCAAATTCAGTGTGTCTAAAAGTACT 60.255 37.037 0.00 0.00 0.00 2.73
1447 1517 6.856426 GGCAAATTCAGTGTGTCTAAAAGTAC 59.144 38.462 0.00 0.00 0.00 2.73
1448 1518 6.544197 TGGCAAATTCAGTGTGTCTAAAAGTA 59.456 34.615 0.00 0.00 0.00 2.24
1449 1519 5.359576 TGGCAAATTCAGTGTGTCTAAAAGT 59.640 36.000 0.00 0.00 0.00 2.66
1450 1520 5.830912 TGGCAAATTCAGTGTGTCTAAAAG 58.169 37.500 0.00 0.00 0.00 2.27
1476 1546 1.664302 GCTCTGCTTTTCTTTGACGCC 60.664 52.381 0.00 0.00 0.00 5.68
1501 1571 6.836242 AGATAACAAATTGAAAAAGGGCCAA 58.164 32.000 6.18 0.00 0.00 4.52
1505 1575 9.981114 ACAAGTAGATAACAAATTGAAAAAGGG 57.019 29.630 0.00 0.00 0.00 3.95
1521 1591 4.930696 TGGAGACCTGACACAAGTAGATA 58.069 43.478 0.00 0.00 0.00 1.98
1524 1594 3.322254 ACTTGGAGACCTGACACAAGTAG 59.678 47.826 6.58 0.00 46.88 2.57
1525 1595 3.305720 ACTTGGAGACCTGACACAAGTA 58.694 45.455 6.58 0.00 46.88 2.24
1526 1596 2.119495 ACTTGGAGACCTGACACAAGT 58.881 47.619 0.00 0.00 44.78 3.16
1600 1670 3.039202 GCGCCGGATTTGTCCACAG 62.039 63.158 5.05 0.00 0.00 3.66
1808 1878 1.742880 GGATGCGCACTCAGCTGAA 60.743 57.895 18.85 1.32 42.61 3.02
1823 1893 4.015406 TGGCACAGGAACGCGGAT 62.015 61.111 12.47 0.00 0.00 4.18
1863 1933 1.301401 CGGGCTTGTGGAAGACGAA 60.301 57.895 0.00 0.00 38.24 3.85
1904 1974 0.249120 GGTCGTGGTCATGGTCATGA 59.751 55.000 9.35 9.35 44.83 3.07
1905 1975 0.036483 TGGTCGTGGTCATGGTCATG 60.036 55.000 4.67 4.67 40.09 3.07
1906 1976 0.036388 GTGGTCGTGGTCATGGTCAT 60.036 55.000 0.00 0.00 0.00 3.06
1907 1977 1.369692 GTGGTCGTGGTCATGGTCA 59.630 57.895 0.00 0.00 0.00 4.02
1919 1989 1.139816 CGTGATCATGGTCGTGGTCG 61.140 60.000 7.06 0.00 31.76 4.79
1937 2007 1.800315 GTGATCGTGGTCGTGGTCG 60.800 63.158 0.00 0.00 38.33 4.79
1949 2037 1.551503 CGTGGCCATGATCGTGATCG 61.552 60.000 21.08 4.72 40.63 3.69
1952 2040 0.249447 GATCGTGGCCATGATCGTGA 60.249 55.000 39.24 16.80 42.06 4.35
2213 2340 1.595794 GAACTCGTTCGTGGCTTCAAA 59.404 47.619 0.00 0.00 0.00 2.69
2251 2379 3.934391 AACGTCGCCTGCTACCAGC 62.934 63.158 0.00 0.00 42.82 4.85
2313 2441 2.552315 GTCCTCGCAATCCAGTTCAAAA 59.448 45.455 0.00 0.00 0.00 2.44
2314 2442 2.151202 GTCCTCGCAATCCAGTTCAAA 58.849 47.619 0.00 0.00 0.00 2.69
2335 2463 3.602483 GCCCTCAACCGAACTAACAATA 58.398 45.455 0.00 0.00 0.00 1.90
2354 2482 2.280628 CTACTCCAGAAATGGAACGCC 58.719 52.381 0.00 0.00 37.55 5.68
2391 2524 3.884895 TCAGAGTGGAACAAACACACAT 58.115 40.909 0.00 0.00 44.16 3.21
2404 2537 6.091305 CACATTTACACAGTACATCAGAGTGG 59.909 42.308 0.00 0.00 34.65 4.00
2418 2551 8.622948 TCCAACATACATTACACATTTACACA 57.377 30.769 0.00 0.00 0.00 3.72
2429 2562 9.410556 GCCAATCATATTTCCAACATACATTAC 57.589 33.333 0.00 0.00 0.00 1.89
2430 2563 9.140874 TGCCAATCATATTTCCAACATACATTA 57.859 29.630 0.00 0.00 0.00 1.90
2431 2564 8.020777 TGCCAATCATATTTCCAACATACATT 57.979 30.769 0.00 0.00 0.00 2.71
2432 2565 7.600231 TGCCAATCATATTTCCAACATACAT 57.400 32.000 0.00 0.00 0.00 2.29
2433 2566 7.255906 GGATGCCAATCATATTTCCAACATACA 60.256 37.037 0.00 0.00 35.05 2.29
2509 2642 5.813513 TGCATCTCATATGTACCATCAGT 57.186 39.130 1.90 0.00 0.00 3.41
2556 2689 3.449018 TGTTAAGCAAGTTTTTCTGGGCA 59.551 39.130 0.00 0.00 32.13 5.36
2587 2720 9.337396 TGACTAATGTAGTGTCAAAAACATCTT 57.663 29.630 0.00 0.00 40.80 2.40
2588 2721 8.774586 GTGACTAATGTAGTGTCAAAAACATCT 58.225 33.333 0.00 0.00 41.52 2.90
2589 2722 7.740346 CGTGACTAATGTAGTGTCAAAAACATC 59.260 37.037 0.00 0.00 41.52 3.06
2590 2723 7.225931 ACGTGACTAATGTAGTGTCAAAAACAT 59.774 33.333 0.00 0.00 41.52 2.71
2591 2724 6.535865 ACGTGACTAATGTAGTGTCAAAAACA 59.464 34.615 0.00 0.00 41.52 2.83
2592 2725 6.940714 ACGTGACTAATGTAGTGTCAAAAAC 58.059 36.000 0.00 0.00 41.52 2.43
2593 2726 7.542534 AACGTGACTAATGTAGTGTCAAAAA 57.457 32.000 0.00 0.00 41.52 1.94
2594 2727 7.542534 AAACGTGACTAATGTAGTGTCAAAA 57.457 32.000 0.00 0.00 41.52 2.44
2595 2728 7.542534 AAAACGTGACTAATGTAGTGTCAAA 57.457 32.000 0.00 0.00 41.52 2.69
2596 2729 7.542534 AAAAACGTGACTAATGTAGTGTCAA 57.457 32.000 0.00 0.00 41.52 3.18
2635 2768 6.427547 TCCGTTCCATAATGTAAGACGTTTTT 59.572 34.615 0.00 0.00 0.00 1.94
2636 2769 5.933463 TCCGTTCCATAATGTAAGACGTTTT 59.067 36.000 0.00 0.00 0.00 2.43
2637 2770 5.481105 TCCGTTCCATAATGTAAGACGTTT 58.519 37.500 0.00 0.00 0.00 3.60
2638 2771 5.075858 TCCGTTCCATAATGTAAGACGTT 57.924 39.130 0.00 0.00 0.00 3.99
2639 2772 4.679662 CTCCGTTCCATAATGTAAGACGT 58.320 43.478 0.00 0.00 0.00 4.34
2640 2773 3.489785 GCTCCGTTCCATAATGTAAGACG 59.510 47.826 0.00 0.00 0.00 4.18
2641 2774 4.439057 TGCTCCGTTCCATAATGTAAGAC 58.561 43.478 0.00 0.00 0.00 3.01
2642 2775 4.404394 TCTGCTCCGTTCCATAATGTAAGA 59.596 41.667 0.00 0.00 0.00 2.10
2643 2776 4.693283 TCTGCTCCGTTCCATAATGTAAG 58.307 43.478 0.00 0.00 0.00 2.34
2644 2777 4.161565 ACTCTGCTCCGTTCCATAATGTAA 59.838 41.667 0.00 0.00 0.00 2.41
2645 2778 3.704566 ACTCTGCTCCGTTCCATAATGTA 59.295 43.478 0.00 0.00 0.00 2.29
2646 2779 2.501723 ACTCTGCTCCGTTCCATAATGT 59.498 45.455 0.00 0.00 0.00 2.71
2647 2780 3.185246 ACTCTGCTCCGTTCCATAATG 57.815 47.619 0.00 0.00 0.00 1.90
2648 2781 3.069729 GGTACTCTGCTCCGTTCCATAAT 59.930 47.826 0.00 0.00 0.00 1.28
2649 2782 2.429610 GGTACTCTGCTCCGTTCCATAA 59.570 50.000 0.00 0.00 0.00 1.90
2650 2783 2.029623 GGTACTCTGCTCCGTTCCATA 58.970 52.381 0.00 0.00 0.00 2.74
2651 2784 0.824759 GGTACTCTGCTCCGTTCCAT 59.175 55.000 0.00 0.00 0.00 3.41
2652 2785 0.541063 TGGTACTCTGCTCCGTTCCA 60.541 55.000 0.00 0.00 0.00 3.53
2653 2786 0.606604 TTGGTACTCTGCTCCGTTCC 59.393 55.000 0.00 0.00 0.00 3.62
2654 2787 1.672145 GGTTGGTACTCTGCTCCGTTC 60.672 57.143 0.00 0.00 0.00 3.95
2655 2788 0.320697 GGTTGGTACTCTGCTCCGTT 59.679 55.000 0.00 0.00 0.00 4.44
2656 2789 0.830444 TGGTTGGTACTCTGCTCCGT 60.830 55.000 0.00 0.00 0.00 4.69
2657 2790 0.108615 CTGGTTGGTACTCTGCTCCG 60.109 60.000 0.00 0.00 0.00 4.63
2658 2791 0.250513 CCTGGTTGGTACTCTGCTCC 59.749 60.000 0.00 0.00 0.00 4.70
2659 2792 0.391793 GCCTGGTTGGTACTCTGCTC 60.392 60.000 0.00 0.00 38.35 4.26
2660 2793 0.838122 AGCCTGGTTGGTACTCTGCT 60.838 55.000 0.00 0.00 38.35 4.24
2661 2794 0.902531 TAGCCTGGTTGGTACTCTGC 59.097 55.000 0.00 0.00 38.35 4.26
2662 2795 1.207329 GGTAGCCTGGTTGGTACTCTG 59.793 57.143 0.00 0.00 38.35 3.35
2663 2796 1.203262 TGGTAGCCTGGTTGGTACTCT 60.203 52.381 0.00 0.00 38.35 3.24
2664 2797 1.066358 GTGGTAGCCTGGTTGGTACTC 60.066 57.143 0.00 0.00 38.35 2.59
2665 2798 0.981943 GTGGTAGCCTGGTTGGTACT 59.018 55.000 0.00 0.00 38.35 2.73
2666 2799 0.035725 GGTGGTAGCCTGGTTGGTAC 60.036 60.000 0.00 0.00 38.35 3.34
2667 2800 1.202769 GGGTGGTAGCCTGGTTGGTA 61.203 60.000 0.00 0.00 38.35 3.25
2668 2801 2.535331 GGGTGGTAGCCTGGTTGGT 61.535 63.158 0.00 0.00 38.35 3.67
2669 2802 2.355115 GGGTGGTAGCCTGGTTGG 59.645 66.667 0.00 0.00 39.35 3.77
2670 2803 1.303317 GTGGGTGGTAGCCTGGTTG 60.303 63.158 0.00 0.00 36.53 3.77
2671 2804 1.140134 ATGTGGGTGGTAGCCTGGTT 61.140 55.000 0.00 0.00 36.53 3.67
2719 2852 5.051816 CCAGAACCTTAAACTGTACGAACA 58.948 41.667 0.00 0.00 0.00 3.18
2721 2854 5.069516 AGTCCAGAACCTTAAACTGTACGAA 59.930 40.000 0.00 0.00 0.00 3.85
2729 2862 8.654215 CGAATAGTTTAGTCCAGAACCTTAAAC 58.346 37.037 0.00 0.00 35.50 2.01
2748 2881 8.793592 TGATATATGTACTGAACTGCGAATAGT 58.206 33.333 0.00 0.00 0.00 2.12
2779 2923 3.520691 AGTGTGGACTGTGGAGTACTA 57.479 47.619 0.00 0.00 33.58 1.82
2815 2959 3.105928 CAGGGGATTGGGAGGGGG 61.106 72.222 0.00 0.00 0.00 5.40
2823 2967 0.893270 TGCGGAAACACAGGGGATTG 60.893 55.000 0.00 0.00 0.00 2.67
2848 2992 8.046107 AGTGAAATTTTGAAACAAATCTTCCCA 58.954 29.630 0.00 0.00 0.00 4.37
2856 3000 8.256605 TGGATCTGAGTGAAATTTTGAAACAAA 58.743 29.630 0.00 0.00 0.00 2.83
2884 3028 7.279313 GCGGTGAAGTTAATTGATTACCTCTTA 59.721 37.037 0.00 0.00 0.00 2.10
2889 3033 5.554822 TGCGGTGAAGTTAATTGATTACC 57.445 39.130 0.00 0.00 0.00 2.85
2890 3034 7.740346 CGATATGCGGTGAAGTTAATTGATTAC 59.260 37.037 0.00 0.00 36.03 1.89
3003 3147 5.798434 ACGTTTTACTTGCAGTTCTTGTTTC 59.202 36.000 0.00 0.00 0.00 2.78
3006 3150 4.155280 ACACGTTTTACTTGCAGTTCTTGT 59.845 37.500 0.00 0.00 0.00 3.16
3007 3151 4.658071 ACACGTTTTACTTGCAGTTCTTG 58.342 39.130 0.00 0.00 0.00 3.02
3010 3154 5.561993 TGTAACACGTTTTACTTGCAGTTC 58.438 37.500 21.55 0.00 33.73 3.01
3011 3155 5.548706 TGTAACACGTTTTACTTGCAGTT 57.451 34.783 21.55 6.08 33.73 3.16
3012 3156 5.106634 TGTTGTAACACGTTTTACTTGCAGT 60.107 36.000 21.55 0.00 33.73 4.40
3013 3157 5.325494 TGTTGTAACACGTTTTACTTGCAG 58.675 37.500 21.55 0.00 33.73 4.41
3014 3158 5.292671 TGTTGTAACACGTTTTACTTGCA 57.707 34.783 21.55 15.24 33.73 4.08
3015 3159 6.343616 CGATTGTTGTAACACGTTTTACTTGC 60.344 38.462 21.55 13.40 38.92 4.01
3023 3167 4.041049 TCGTACGATTGTTGTAACACGTT 58.959 39.130 15.28 4.45 40.53 3.99
3024 3168 3.626977 TCGTACGATTGTTGTAACACGT 58.373 40.909 15.28 14.77 42.04 4.49
3025 3169 4.611516 CTTCGTACGATTGTTGTAACACG 58.388 43.478 20.27 1.98 38.92 4.49
3030 3174 3.122278 GCTTGCTTCGTACGATTGTTGTA 59.878 43.478 20.27 0.58 0.00 2.41
3040 3184 4.615541 GGTTTGTTTATGCTTGCTTCGTAC 59.384 41.667 0.00 0.00 0.00 3.67
3056 3201 8.943002 CCGTATTTCTGTATAAGAAGGTTTGTT 58.057 33.333 0.00 0.00 45.64 2.83
3078 3223 0.391130 GGTCAGTTGATGCTGCCGTA 60.391 55.000 0.00 0.00 36.49 4.02
3084 3229 3.540211 CGAAGGGTCAGTTGATGCT 57.460 52.632 0.00 0.00 0.00 3.79
3105 3250 2.550606 TGTTTGTGGCCGTTCAATCTAC 59.449 45.455 0.00 0.41 0.00 2.59
3108 3253 2.723124 ATGTTTGTGGCCGTTCAATC 57.277 45.000 0.00 3.98 0.00 2.67
3132 3277 3.558505 CAGCGTTTCATTTGAGTTCCAG 58.441 45.455 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.