>input_sequence_58628
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-----------------------------ATGGCGCTCCTACCACGGCTGTTCCTGTTCGGAGTTTGCGCCGTAGCGCTG
GCGATCGGCCTCGCGAACGCTGTGCACGGCGAGGCGGCGCCGGTCGTGGTCGGCCTGGCCAGGTGCTCGGACTGCACAAG
GAAGAACATGAACGCCGAGGCAGCTTTCAAAGGTACGTAAACTTTTTTGAACACAGTACATACGCAAGCGCTCATATACA
CGCGCATACACTCACCCTATGAACGCGCACACACCCTACCCCTATGAGCATCTCCGAAAGACTGAGCCGGCATATCATCT
TAAAATTTACAAAGTCACCGTAGGCACTTCGTCGTCGACGGGAACGTCTTCTCCCACTAAATGCGCATCGCCGAAAATCC
TGAAATTATTCATGAATAAATGCGAGCACCAGAACTTGAACCGTGATGGGCTGGGGATACCACAGTCCCTCTAAAAGTAC
TTTTAGACACACTGAATTTGCCAACGGCGTCAAAGAAAAGCAGAGCCTAATTGGCCCTTTTTCAATTTGTTATCTACTTG
TGTCAGGTCTCCAAGTTGCTGTCAAGTGTAAGAATGGCAAGGGCGAGTACGAGAGCAAGTCCGTGGGGCCTGTGGACAAA
TCCGGCGCCTTCAGCGTCCCCCTGGACGTCGGCCTCGTCGGGGACGGCGGCGAGCTGAAGCAGGACTGCTTCGCGCAGCT
CCACAGCGCGTCTGGCGCGCCGTGCCCCGGGCAGGAGCCCTCCAAGATCGTCGCGGCACGGCCCGGCCGCGACGGCCAGA
CGACCTTCGTCGCGCTCGCCGGCGAGGTGCACCAACCTTCAGCTGAGTGCGCATCCGCGTTCCTGTGCCATCCTCTGCAC
AAGCACCACCTGTTCGTCTTCCACAAGCCCGTGACTGTCCCTCCCAAGCACGATCATGACCATGACCACGACCACGACCA
TGATCACGACCA------------------CGACCACGATCACGATCATGGCCACGATCACGATCACGA-----------
-------------------------TCTCGCGCCTGCAGT---CAAGCCGCCAACGACGCCGGTGTACACGCCGACGGCG
CCAACCCCGACGCCGATCTACCACCCCCGGGCCCAGCGTGACGCCGTCACTGAGCCACAACTCTTCAAGAAGATGCTCCC
GTTCCTCAAGAAGCTGCCGTTCTTTCCTCCTGCCAAGCAGAGCGGCGGCAAGCCGTAG----------------------
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>chr4D_1_TraesCS4D01G226700
CACCGTCATCGTCCCTCCCTCACCGGAGCCGGGCCAAACTTGTTGTAGTAGACAGTTGGAAAGTCGTCGTGCTAAGGCCC
TACAGGACCAGCGCACCAGAACAGCAACCGTTGCCGATGAAGAGAAGTATACATCGAAA-GAACCAACCTGTAGACGCAC
GAACG------AAGACTGGATACAAACAGATCCATCAAAGACCAGTACTGACTGAATCCTGCAAGATCTATCGGAGACAC
ACCTCCACACGCCCTCCGACGATGCTAGACCCATCACCAGAAT--GGGATCAGATGGGGGAAGCTTATTCCATCTTCAGA
GATGCGTCACCGCCTTCTTTTCGTGAGTAGGACACAAACCCTAAACGAAATCATAAAAACACCTAAAAAGGGAGCATGGT
CCCTCCCACCGGCAAGGGCCGGGGTCTACCACGTCTTCATGGCCCTAGGGCCACCGGAGACAAGGCGGACCGGCGGCGGC
GCCGGTGG------------------------------GAGTCAGATGAACCCTATGCGTACTTCTGTCTTTAGCTTAC-
-TAGTC-------TGCCTCACATGCTTACAAGTTAATGACCGCTTAAGTTCAG-----------------CTATTCATCT
TTTCAGTATTTGCGCTTTGTTTTGTTTACT---TTCTTCTTCTTCCGAAAATGTGTTTTTTTTAAGAAGTTGTTAAAATC
TTTCATTCACCCTCCCTTGATCTGGTCGACAACTTGATCCTGCAAAAGGGCAATCCATGTGCTATGTACTAAACTTCGCT
TGAGCATTTAACGGCCAGTACGAGGAAAGTTGGAACTGGA-GAGTATATTTGAAGGAAAGGAGATCACATTACGCGACGT
TAATGGCTAATCTGCAAAGCCGGCGCCGAATTTAGCTGTTCTTCACCTTTTCACTTACGGGCCGATCCGGTTGATTGAAC
CGCGTCGGTGTTTGACGCCTATATAAACGATGCCATCCTTGGCCACATCCATCCATCCACAGCTTCCCTTCCTTGGCATC
TCCGAACAAGTGGTAGATTGAGCTCCACAATGGCGCTCCTACCACGGCTGTTCCTGTTCGGAGTTTGCGCCGTAGCGCTG
GCGATCGGCCTCGCGAACGCTGTGCACGGCGAGGCGGCGCCGGTCGTGGTCGGCCTGGCCAGGTGCTCGGACTGCACAAG
GAAGAACATGAACGCCGAGGCAGCTTTCAAAGGTACGTAAACTTTTTTGAACACAGTACATACGCAAGCGCTCATATACA
CGCGCATACACTCACCCTATGAACGCGCACACACCCTACCCCTATGAGCATCTCCGAAAGACTGAGCCGGCATATCATCT
TAAAATTTACAAAGTCACCGTAGGCACTTCGTCGTCGACGGGAACGTCTTCTCCCACTAAATGCGCATCGCCGAAAATCC
TGAAATTATTCATGAATAAATGCGAGCACCAGAACTTGAACCGTGATGGGCTGGGGATACCACAGTCCCTCTAAAAGTAC
TTTTAGACACACTGAATTTGCCAACGGCGTCAAAGAAAAGCAGAGCCTAATTGGCCCTTTTTCAATTTGTTATCTACTTG
TGTCAGGTCTCCAAGTTGCTGTCAAGTGTAAGAATGGCAAGGGCGAGTACGAGAGCAAGTCCGTGGGGCCTGTGGACAAA
TCCGGCGCCTTCAGCGTCCCCCTGGACGTCGGCCTCGTCGGGGACGGCGGCGAGCTGAAGCAGGACTGCTTCGCGCAGCT
CCACAGCGCGTCTGGCGCGCCGTGCCCCGGGCAGGAGCCCTCCAAGATCGTCGCGGCACGGCCCGGCCGCGACGGCCAGA
CGACCTTCGTCGCGCTCGCCGGCGAGGTGCACCAACCTTCAGCTGAGTGCGCATCCGCGTTCCTGTGCCATCCTCTGCAC
AAGCACCACCTGTTCGTCTTCCACAAGCCCGTGACTGTCCCTCCCAAGCACGATCATGACCATGACCACGACCACGACCA
TGATCACGACCA------------------CGACCACGATCACGATCATGGCCACGATCACGATCACGA-----------
-------------------------TCTCGCGCCTGCAGT---CAAGCCGCCAACGACGCCGGTGTACACGCCGACGGCG
CCAACCCCGACGCCGATCTACCACCCCCGGGCCCAGCGTGACGCCGTCACTGAGCCACAACTCTTCAAGAAGATGCTCCC
GTTCCTCAAGAAGCTGCCGTTCTTTCCTCCTGCCAAGCAGAGCGGCGGCAAGCCGTAGATGGTTTTGTCCGCGGCGGAGC
GAGGTTGCTCGCTCTTTTGTTTGAAGCCACGAACGAGTTC-TTTTCACTCCTTTGCTCGCTGGTAGCAGGCGACGTTGCT
TCCACAAAATAATGTTTGCGAGGACGATTGTTTTTCATTTTTTTGAACTGGATTGCGAGGACTATTGTTAGTTCGGTTGA
GGGCGTTCCATTTCTGGAGTAGTTCGATCT-----TGCTTGTTATGTGTGTTTGTTCCACTCTGATGTACTGTGTAAATG
TGTAATGTATGTTGGAAATATGATTGGCATCCTGTTATTTCTCACTTGATGCGTACGGCGACTTCTGCCACTGACCTTCT
CACTGATGGTACATATGAGATGCAACTTTGGTAGATGAATGAGCGGGATGCCCAGAAAAACTTGCTTAACAGTTATTGTA
AGATGTTTTTGACACTACATTAGTCACGTTTTTTGACACTAGTTTCAAAAAACGTCTTACATTATGGAACGGAGCAGAGT
ACCAACCAGGCTACCACCCACATGAACAATATTGACGTCCTGCCCCACTTCTGTTCGTACAGTTTAAGGTTCTGGACTAA
ACTATTC--------GCAGTTCAGTACATATATCA---ACTCTAGTACTCCACAGTCCACACTACTCACTAAATACTACC
CCCTCCCAATCCCCTGTGTTTCCGCAAGATATGGGAAGATTTGTTTCAAAATTTCACTCAGATCCATTAAGAGGTAATCA
ATTAACTTCACCGCATATCGCCTTCTTGCAAGACATCAATCATGTTGTAAATTCTCTTAGGATCCATTGATTGTACCTAA
ATTAGAAAGAAATAGTAAGATAATAAGAAACAAGAACTGCAAGTAAAACGTGTTACAACAATCGTACGAAGCAAGC-ATA
AACAAACCTTCTTATACAGAAATACGGCAGCATCAACTGACCCTTCGGCGTAGATTGAACGGCCACAAACATTGTGCTGG
AACTCAAATGAAACGCTGGCAGGAGAAAACCGAACA
>chr4D_1
CACCGTTATCGCCCCTCCCTCACCGAAGCCTTGCAAAACTTGTTGTAGTAGACAGTCTATAAGGCGTCGTGCTAAGGGCC
CTAAGGACCAGCACACTAGAACAGT--CTGTCGTTGATGAAGGGAAGTGTAAATCGAAAGGATCCAACCTGAAAACACAT
GAACATAGACAAAGACCGGATTCAAGCAGATCCACCAAAGACAGACGCCAACCGAATCCAGCGAGATCCGTTAGAGACAC
ACCTCCACACGCCCTCCGACGACGCTGGACACACCGCCGGAGCGGGGGCTAGGCGGGGAGAATCTTATTCCA--------
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--TCTTCAGGGAGCTGTCGTCGCCTCATCTTCCTGAGCAGGACACAAACCCTAAACAATCTAAAAAAACACCTAAAAATT
GAGCATCAGCCCTCCCACCGGCAGGGTCAGGATCTACCGCGCCTCCATGACCCTAAGGCCACAGGAGA------------
------------------CGAGGAAGATTGGGGACGGGGCCGGTGAGAGGCAGAGAAACCCTA-----------------
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>chr4B_5
----GTCATTGTCCCTCCCTCACCGAAGTCGGGCTAAACTTGTTGTAGTAGACAGTCGGAAAGTTGTCGTGCTAAGTCCC
TATAGGACCAGCGCACCAGAACAGTAACCGTCGCCGATGAAGAAAAGTATAAATCAAAA-GAACCAACATGTAGATGCAT
GAATG------AAGACCCGATCCAAACAGATCCACCGAAGACCAGTACCGACTGAATCTTGTGAGATTTGTCGGAGGCAC
ACCTGCACACGCCCTCCGGCGACGCTAGACGCATCACCGAAAC-GGGGCTAGCCAGGGAGAAGTTTATTTCATCTTCAGG
GAGGCGTCACTGCCTCGTCTTCGTGAGTAGGACACAAACCCTAAACGAAATCATAAAA-CACCTAAAAACGGGGCAGGAT
CCCTCCCACCAGCAAGGGAC-GGGTCCACCGCGCCTCCACGGCCCTAGGGCCACCAGAGACGAGGCGAACCGGCGGCAGC
GCCGGCGGGAGTCAGAACCCTAAGTTTCTTTGTTTTTGGAGTCAGAGGAACCCTAAGCATACTTCTGTCTTTAGCTTAC-
-TAGTTTTACTTTTGCCTCACATGCTGTGTTTTGGCAACAATGTATTGCAAAAAACTGAAGTATTGAAAACTATTCCTCT
TTTCAGTATTTGCGCTTTGTTTTGTTTACT---TTCTTCTTCTTCCAAAAATGCGTTTTTTG-AAGAAATTGTTAAAAAC
TTTCATCCACCCTCCCCTGATCTGGTCGACAACTTGATCCTGCAAAAGGGCAATCCATGTGCTATGTACTACACTTCGCT
TGAGCATTTAACGGCCAGTACGAGGAGACTTGGAACTGGAAGAGTATATCTGAAGGAAAGGAGATCACATTAGGCGACGT
TGATGGCTAATCTGCAAAGCCGGCGCCGAATTTAGCCGTTCTTCACTTTTTCACTTACGGGCCGCTCCGGTTGATTGAAC
CGCGTCAGTGTTTGACGCCTATATAAAGGATGCCATCCTTGTCCACG----TCCATCCACAGCTTCCCTTCCTTAGCATC
TCCGAACAAGTGGTAGATCGAGCTCCACAATGGCGCTCCTACCTCGGCGGTTTCTGTTCGGAGTTTGCGCTGTAGTGCTG
GTGATCGGCCTCGCAAACTCTGTGCACGGCGAGGCGGCGCCGGTCGTGGTCGGCCTGGCCAGGTGCTCGGACTGCACAAG
GAAGAACATGAATACCGAGGCAGCTTTCAAAGGTACTGTACTTTTT----------------------------------
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>chr4A_480
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--------------------------------------GAGTCAGAGGAACCCTAAGCATACTTCTGTCTTTAGCTTACT
ATAGTTTTACTTTTGCCTCACATGCTTGTAAGCTAATGACCGCTTAAGTTCAG-----------------CTATTCCTCT
TTTCAGTATTTGCGCTTTGTTTTGTTTACTTTCTTCTTCTTCTTCCGAAAATGTGTTTTT-G-AAGAAATTGTTAAAATC
TTCCATTCACCCTCCCTCGATCCGGTCGATAACTTAATCCTGCAAAATGGCAATCCATGTGCTACGTACTACACTTCGCT
TGAGCATTTAACGGCCAGTGCGAGGAAAGCTGGAG------GAGTATATCTGAAGGAAAGGAGATCACATTAGGCGACGT
TAATGGCTAATCTGCAAAGCCGGCGTCTAATTTAGCTGTTCGTCACTGTTTCACTTACGGGCCGCTCCGGTTGATTGAAC
CTCGTCGGTGTTTGGCGCCTATATAAACGATGCCATCCTTGTCCACATCCATCCATCCACAGCTTCCCTTCCTTAGCATC
TCCGAACAGGTGGTAGATCGAGCTCCACAATGGCGCTCCTACCTCGGCGGTTTCTGTTCGGGGTTTGCGCCGTAGCGCTG
GCGATCGGCCTCGCGAACGCTGTGCACGGCGAGGCGGCGCCGGTCGTGGTCGGCCTGGCCAGGTGCTCGGACTGCACAAG
GAAGAGCATGAATGCCGAGGCCGCTTTCAAAGGTACGTAAACT-------------------------------------
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TTTTAGACACACTGAATTTGCCAACAGCGTCAAAGAAAAGCAGAGCCTAACTGG-CCTTTTTCAATTTGCCATTGGCTTG
TGTCAGGTCTCCAGGTTGCTGTCAAGTGTAAGAACGGCAAGGGCGAGTACCAGAGCAAGGCCGTGGGGCATGTGGACAAG
TCCGGCGCCTTCAGCGTCCCCCTGGACGCCGGCCTCGTCGGCGACGACGGCGAGCTGAAGCAGGACTGCTTCGCGCAGCT
CCACAGCGCGTCTGGCGCGCCGTGCCCCGGGCAGGAGCCCTCCAAGATCGTCGCGACACGGCCCGGCCGCGACGGCCAGA
CGACCTTCGTCGCGCTCGCCGGCGAGGTGCACCAACCGTCGGCTGAATGCGCCTCAGCGTTCCTGTGCCATCCTCTGCAC
AAGCACCACCTGGTCGTCTTCCACAAGCCCGTGACTGTCCCTCCCAAGCCC------GACCATGACCATGACCACGACCA
TGATCATGACCATGACAACGACCATGATCACGACCATGACCACGACCATGGCCACGATCATGATCACGACCATGGCCACG
ATCATGACCATGACCACGATCACTCGCTCCCGCCTGCAGT---CAAGCCGCCAACGACGCCGGTGTACACGCCGACGGCG
CCAACCCCGACGCCGATCTACCACCCCCGGGCCCAGCGTGACGCCGTCACTGAGCCACAACTCTTCAAGAAGATGCTCCC
GTTCCTCAAGAAGCTGCCGTTCTTTCCTCCTGCCAAGCAGAGCGGCGGCAAGCCGTAGATGGTTTTGTCCGCGGCGGAGC
GAGGTTGCTCGCTCTTTTGGTTGAAGCCACGAACGAGTTATTTTTCGCTCCTTTGCTCACTGGTAGCAGGCGACGTTGCT
TCCACAAAATAATGTTTGCGAGGACGATTGTTTTTCATTTC-TTGAACTGGATTGCGAGGACGATTGTTAGTTCAGTTGA
GAG-GTTCCATTTCTGGAGTAGTTCGATCTGCATCTGCTTGTTTTGTGTGTTTGTTTCACTCTGATGTACCGTGTGTAGT
ACA---GTGTGTTCGAAATATGATTGGCATCCTGTTATTTCTCACTTGATGCGTACGGCGACTTCTGCCACTGACCTTCT
CGCTGATGGTACATATGAGATGCAACTTTGGTAGATGGATGAGCGGGAAGCCCAGAAAAACTTGCTTAACAGTTACCT--
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----ACCAGGCTACCACCCACATGAACAATATTGACGTCCTGCCCCACTTCCGGTCGTACAATTTAAGGTTCTGGACTAA
GCTATTCGGGTGCATGCAGTTCAGCACATATATCATCAACTCCAGTACTCCACAGTCCACACTACTCACTAAATACTA-C
CCCTCCAAATCCCCTGTGTTTCCGCAAGATACGGGAAGA-TTGTTTCAAAATTTCACTCAGATCCATCAAGACCTAATCA
ACTAACTTCACCGCATATCGCCTTCTTGCAAGACATCAATCATGTTGTAAATTCTCTTAGGATCCATTGATTGTACCTAA
ATTAGAAGGAAATAGTAATAAGATAACAAGAAATC----CAAGTAACGTGTGTCACAACAATCATACGAAGCAAGATATA
CACAAACCTTCTTATACAGAAACACGGCGGCATCAACTGACCCTTCGGCATATATTGAACGGCCACAAACATTGTGTTGG
AACTCAAATGAAACGCTGGCAAGAGAAAACAGAACA
>chr4B_1508
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--------------------------------------------------------CTTTTTCAATTTGTCATTGGCTTG
TGTCAGGTCTCCAAGCCGCTGTCAAGTGTAAGAATGGCGAGGGCGAGTACGAGAGCAAGGCCGCGGGGCATGTGGACAAT
TCCGGCGCCTTCAGCGTCCCCCTGAACGTGGGCCTCGTCGGCGATGACGGCGAGCTGAAGCAGGACTGCTTCGCGCAGCT
CCACAGCGCGTCTGGTGCGCCGTGCCCCGGGCAAGAGCCCTCCAAGATCATCGCGGCACGGCCCGGCCGCGACGGCCAGA
CGACTTTCGTGGCGCTCGCCGGCGAGGTGCACCGACCGTTGGCTGAATGCGCCTCGGCGTTCTTGTGCCATCCTCTGCAC
AATCACCACCTGGCCGTCTTCCACAAGCCCGTGATTGTCCGTCCCAAGCCC------GAT--------------------
----------------------CATTACCATGATCATGACCACGATCATGGCCACGATCA------------------CG
ATCATGATCATCACCACGACCAGGATCTCCCGCCTGCTGTCAACAAGCCGCCAACGACGCCGGTGTACACGCCGACGATG
CCAACCCCCACGCCGATCTACCATCCCACGGCCCAGCGTGACGCCGTCACGGAGCCACAGCTCTTCAAGAAGATGCTCCT
GTTCCTCAAGAAGCTACCGTTCTTCCCTCCTGCCAAGCAGA---GCGGCAAGCCGTAGATAGTTTTGTCCGCGGCGGAGC
GAGGCTGCTCGCTCTTTTGGTTGAAGCCACACACGATTTT---------------------------------------T
TCCACAAAATAATGTTTGCGAGGATGATTGTT-------------------------------------AGTTGGGTTGA
GAGCGTTCCATTTCTGGAGTAGTTCGATCT-----TGCTTGTTTTGTGTGTTTGTTTCACTCTCATGTATCGTGTGTAAT
AC-----TATGTTGGAAATATGATTG------------------------------------------------------
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>SNPs
-------------------------S--------S---------------------S-----------------------
--S---------------------S------S-------------------S---------------------------S
----------------S----S------------S-------------S-------------S------S----------
----------------------S-------S-------S---S-----S-SS-SS---S--------------------S
--S-------S----SS-S---------------------------------------S----------S--S---S-S-
----------S-------S-S-----S---S--S--S--S---------------S-----S-----S---------S--
-----S----------------------------------------S--------S--S---------------------
-----S---------------------SS-----------------------------------------------S---
-------------------------------------------------------------SS-----S-----------
-----------------------------------------------------------------------S--------
-------------------------------------------------S----------------------S-------
----------------------------------------------S-----------------S---------------
-----------------------------------------S--------------------------------S-----
------------------S------------------------S----S---S---------------------------
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------------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-------------------------S------------------------S---S---------------S--SSS----
-----------------------------------------------------------S---------S---------S
-----------------------------------------S----S---------------------------------
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-------------------------------------S--S-----S-----S--S------------------------
------------S------------------------------------S-SSSSSS-----------S-----------
------S-----------------------------S--S--------------------S-------------------
-----------------------------S--------------------------------------------------
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-------------------S--------------------------------------S---------------------
----------------------------------------SS--------------------S-----------------
-S-----------------------------------------S------------S-------------S----SS-SS
SSSSSS--------------------------------------------------------------------------
-S-----------------------------------S----------S--------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-----------------------------------------------S-S-------S------------------
S-----------------------S-----------------S-----------------------------------S-
------S------------------------S-------S---------------------------S----SS------
-S------------------------------------------------------------------------------
-------S----------S-SS----S--SS--SSSSSS-------SSS----S---------S-----------S----
S---------------------S-----S--------------------S--S-----------------------S---
---------------------S--------S-----
>forward_945
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---------------------------------------------CCTTTTCACTTACGGGCCGA---------------
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>reverse_2799
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------------------------------------------------------------------------------GT
ACCAACCAGGCTACCACC--------------------------------------------------------------
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