Multiple sequence alignment - TraesCS4D01G219100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G219100 chr4D 100.000 3080 0 0 1 3080 374601098 374598019 0.000000e+00 5688
1 TraesCS4D01G219100 chr4B 93.744 2238 87 24 604 2805 460870573 460868353 0.000000e+00 3308
2 TraesCS4D01G219100 chr4A 92.546 2227 86 32 595 2766 89929726 89931927 0.000000e+00 3120
3 TraesCS4D01G219100 chr4A 90.303 165 12 2 2893 3057 89932003 89932163 2.410000e-51 213
4 TraesCS4D01G219100 chr5B 81.106 217 24 7 1240 1456 696633012 696633211 1.140000e-34 158
5 TraesCS4D01G219100 chr5B 85.833 120 16 1 1044 1163 696632881 696632999 3.220000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G219100 chr4D 374598019 374601098 3079 True 5688.0 5688 100.0000 1 3080 1 chr4D.!!$R1 3079
1 TraesCS4D01G219100 chr4B 460868353 460870573 2220 True 3308.0 3308 93.7440 604 2805 1 chr4B.!!$R1 2201
2 TraesCS4D01G219100 chr4A 89929726 89932163 2437 False 1666.5 3120 91.4245 595 3057 2 chr4A.!!$F1 2462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.032952 GCGGTGCTTCGGGATATACA 59.967 55.0 1.94 0.0 0.0 2.29 F
365 366 0.033090 AAAAGACGTGGACTCCGGAC 59.967 55.0 0.00 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1675 0.401105 AGGGCTGGATCAGTATGGCT 60.401 55.0 0.00 0.0 36.16 4.75 R
2250 2306 0.670546 TGCTTTCCGACAGCACTAGC 60.671 55.0 5.08 0.0 42.49 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.105128 GATGCGGTGGGAGTCGAG 59.895 66.667 0.00 0.00 0.00 4.04
18 19 3.432051 GATGCGGTGGGAGTCGAGG 62.432 68.421 0.00 0.00 0.00 4.63
19 20 4.988716 TGCGGTGGGAGTCGAGGT 62.989 66.667 0.00 0.00 0.00 3.85
20 21 4.436998 GCGGTGGGAGTCGAGGTG 62.437 72.222 0.00 0.00 0.00 4.00
21 22 4.436998 CGGTGGGAGTCGAGGTGC 62.437 72.222 0.00 0.00 0.00 5.01
22 23 4.083862 GGTGGGAGTCGAGGTGCC 62.084 72.222 0.00 0.00 0.00 5.01
23 24 3.311110 GTGGGAGTCGAGGTGCCA 61.311 66.667 3.98 3.98 32.07 4.92
24 25 2.997315 TGGGAGTCGAGGTGCCAG 60.997 66.667 3.98 0.00 30.78 4.85
25 26 4.459089 GGGAGTCGAGGTGCCAGC 62.459 72.222 0.67 0.00 0.00 4.85
26 27 4.459089 GGAGTCGAGGTGCCAGCC 62.459 72.222 0.00 0.00 0.00 4.85
27 28 4.803426 GAGTCGAGGTGCCAGCCG 62.803 72.222 0.00 0.00 0.00 5.52
39 40 2.266055 CAGCCGTGGAGGAGGTTC 59.734 66.667 0.00 0.00 45.00 3.62
40 41 2.120718 AGCCGTGGAGGAGGTTCT 59.879 61.111 0.00 0.00 45.00 3.01
41 42 1.536662 AGCCGTGGAGGAGGTTCTT 60.537 57.895 0.00 0.00 45.00 2.52
42 43 0.252103 AGCCGTGGAGGAGGTTCTTA 60.252 55.000 0.00 0.00 45.00 2.10
43 44 0.831307 GCCGTGGAGGAGGTTCTTAT 59.169 55.000 0.00 0.00 45.00 1.73
44 45 1.209747 GCCGTGGAGGAGGTTCTTATT 59.790 52.381 0.00 0.00 45.00 1.40
45 46 2.906354 CCGTGGAGGAGGTTCTTATTG 58.094 52.381 0.00 0.00 45.00 1.90
46 47 2.236395 CCGTGGAGGAGGTTCTTATTGT 59.764 50.000 0.00 0.00 45.00 2.71
47 48 3.262420 CGTGGAGGAGGTTCTTATTGTG 58.738 50.000 0.00 0.00 0.00 3.33
48 49 3.010420 GTGGAGGAGGTTCTTATTGTGC 58.990 50.000 0.00 0.00 0.00 4.57
49 50 2.026262 TGGAGGAGGTTCTTATTGTGCC 60.026 50.000 0.00 0.00 0.00 5.01
50 51 2.026262 GGAGGAGGTTCTTATTGTGCCA 60.026 50.000 0.00 0.00 0.00 4.92
51 52 3.372025 GGAGGAGGTTCTTATTGTGCCAT 60.372 47.826 0.00 0.00 0.00 4.40
52 53 3.624777 AGGAGGTTCTTATTGTGCCATG 58.375 45.455 0.00 0.00 0.00 3.66
53 54 2.689983 GGAGGTTCTTATTGTGCCATGG 59.310 50.000 7.63 7.63 0.00 3.66
54 55 3.356290 GAGGTTCTTATTGTGCCATGGT 58.644 45.455 14.67 0.00 0.00 3.55
55 56 4.523083 GAGGTTCTTATTGTGCCATGGTA 58.477 43.478 14.67 5.86 0.00 3.25
56 57 4.526970 AGGTTCTTATTGTGCCATGGTAG 58.473 43.478 14.67 0.00 0.00 3.18
57 58 3.066760 GGTTCTTATTGTGCCATGGTAGC 59.933 47.826 14.67 4.59 0.00 3.58
58 59 3.643199 TCTTATTGTGCCATGGTAGCA 57.357 42.857 14.67 7.28 38.08 3.49
59 60 3.544684 TCTTATTGTGCCATGGTAGCAG 58.455 45.455 14.67 0.73 41.87 4.24
60 61 2.346766 TATTGTGCCATGGTAGCAGG 57.653 50.000 14.67 0.00 41.87 4.85
61 62 0.625316 ATTGTGCCATGGTAGCAGGA 59.375 50.000 14.67 0.00 41.87 3.86
62 63 0.322456 TTGTGCCATGGTAGCAGGAC 60.322 55.000 14.67 3.52 41.87 3.85
63 64 1.815421 GTGCCATGGTAGCAGGACG 60.815 63.158 14.67 0.00 41.87 4.79
64 65 2.897350 GCCATGGTAGCAGGACGC 60.897 66.667 14.67 0.00 42.91 5.19
71 72 1.226603 GTAGCAGGACGCGGTACTG 60.227 63.158 12.47 16.36 46.49 2.74
72 73 1.676635 TAGCAGGACGCGGTACTGT 60.677 57.895 21.96 14.04 45.57 3.55
73 74 1.246056 TAGCAGGACGCGGTACTGTT 61.246 55.000 21.96 19.52 45.57 3.16
74 75 2.380410 GCAGGACGCGGTACTGTTG 61.380 63.158 21.96 8.23 45.57 3.33
75 76 1.736645 CAGGACGCGGTACTGTTGG 60.737 63.158 12.47 0.00 39.48 3.77
76 77 2.205152 AGGACGCGGTACTGTTGGT 61.205 57.895 12.47 0.00 0.00 3.67
77 78 2.025418 GGACGCGGTACTGTTGGTG 61.025 63.158 12.47 0.00 0.00 4.17
78 79 2.025418 GACGCGGTACTGTTGGTGG 61.025 63.158 12.47 0.00 0.00 4.61
79 80 2.029964 CGCGGTACTGTTGGTGGT 59.970 61.111 0.00 0.00 0.00 4.16
80 81 1.289694 CGCGGTACTGTTGGTGGTA 59.710 57.895 0.00 0.00 0.00 3.25
81 82 1.010419 CGCGGTACTGTTGGTGGTAC 61.010 60.000 0.00 0.00 37.97 3.34
85 86 2.358939 GTACTGTTGGTGGTACCTCG 57.641 55.000 14.36 0.00 39.58 4.63
86 87 0.604578 TACTGTTGGTGGTACCTCGC 59.395 55.000 14.36 4.61 39.58 5.03
87 88 1.736645 CTGTTGGTGGTACCTCGCG 60.737 63.158 14.36 0.00 39.58 5.87
88 89 3.116531 GTTGGTGGTACCTCGCGC 61.117 66.667 14.36 0.00 39.58 6.86
89 90 4.728102 TTGGTGGTACCTCGCGCG 62.728 66.667 26.76 26.76 39.58 6.86
96 97 4.789075 TACCTCGCGCGGTGCTTC 62.789 66.667 30.04 0.00 43.27 3.86
102 103 4.884257 GCGCGGTGCTTCGGGATA 62.884 66.667 8.83 0.00 44.22 2.59
103 104 2.029073 CGCGGTGCTTCGGGATAT 59.971 61.111 0.00 0.00 44.22 1.63
104 105 1.287815 CGCGGTGCTTCGGGATATA 59.712 57.895 0.00 0.00 44.22 0.86
105 106 1.007336 CGCGGTGCTTCGGGATATAC 61.007 60.000 0.00 0.00 44.22 1.47
106 107 0.032952 GCGGTGCTTCGGGATATACA 59.967 55.000 1.94 0.00 0.00 2.29
107 108 1.935300 GCGGTGCTTCGGGATATACAG 60.935 57.143 1.94 0.00 0.00 2.74
108 109 1.340248 CGGTGCTTCGGGATATACAGT 59.660 52.381 0.00 0.00 0.00 3.55
109 110 2.607282 CGGTGCTTCGGGATATACAGTC 60.607 54.545 0.00 0.00 0.00 3.51
110 111 2.607282 GGTGCTTCGGGATATACAGTCG 60.607 54.545 0.00 0.00 0.00 4.18
111 112 2.292569 GTGCTTCGGGATATACAGTCGA 59.707 50.000 0.00 0.00 0.00 4.20
112 113 3.057456 GTGCTTCGGGATATACAGTCGAT 60.057 47.826 0.00 0.00 0.00 3.59
113 114 3.190744 TGCTTCGGGATATACAGTCGATC 59.809 47.826 0.00 0.00 0.00 3.69
114 115 3.440872 GCTTCGGGATATACAGTCGATCT 59.559 47.826 0.00 0.00 0.00 2.75
115 116 4.437659 GCTTCGGGATATACAGTCGATCTC 60.438 50.000 0.00 0.00 0.00 2.75
116 117 3.259902 TCGGGATATACAGTCGATCTCG 58.740 50.000 9.65 9.65 43.44 4.04
117 118 3.001414 CGGGATATACAGTCGATCTCGT 58.999 50.000 8.22 0.00 38.49 4.18
118 119 3.181519 CGGGATATACAGTCGATCTCGTG 60.182 52.174 8.22 0.00 38.49 4.35
119 120 3.127203 GGGATATACAGTCGATCTCGTGG 59.873 52.174 0.00 0.00 40.80 4.94
120 121 3.426426 GGATATACAGTCGATCTCGTGGC 60.426 52.174 0.00 0.00 40.80 5.01
121 122 0.669077 ATACAGTCGATCTCGTGGCC 59.331 55.000 0.00 0.00 40.80 5.36
122 123 1.712018 TACAGTCGATCTCGTGGCCG 61.712 60.000 0.00 0.00 40.80 6.13
123 124 3.518998 AGTCGATCTCGTGGCCGG 61.519 66.667 0.00 0.00 40.80 6.13
142 143 3.791586 GTGCCCTCCCCTCTGCTC 61.792 72.222 0.00 0.00 0.00 4.26
146 147 4.154347 CCTCCCCTCTGCTCGCAC 62.154 72.222 0.00 0.00 0.00 5.34
147 148 4.154347 CTCCCCTCTGCTCGCACC 62.154 72.222 0.00 0.00 0.00 5.01
149 150 4.463879 CCCCTCTGCTCGCACCAG 62.464 72.222 0.00 0.00 0.00 4.00
192 193 2.047274 CCACGAGTTGGCATCGGT 60.047 61.111 14.30 2.98 44.36 4.69
193 194 2.390599 CCACGAGTTGGCATCGGTG 61.391 63.158 14.30 13.44 44.36 4.94
194 195 1.667830 CACGAGTTGGCATCGGTGT 60.668 57.895 14.30 0.86 44.36 4.16
195 196 1.374252 ACGAGTTGGCATCGGTGTC 60.374 57.895 14.30 0.00 44.36 3.67
196 197 1.079819 CGAGTTGGCATCGGTGTCT 60.080 57.895 0.21 0.00 36.54 3.41
197 198 0.670546 CGAGTTGGCATCGGTGTCTT 60.671 55.000 0.21 0.00 36.54 3.01
198 199 0.798776 GAGTTGGCATCGGTGTCTTG 59.201 55.000 0.21 0.00 0.00 3.02
199 200 1.210155 GTTGGCATCGGTGTCTTGC 59.790 57.895 0.21 0.00 35.64 4.01
200 201 1.073025 TTGGCATCGGTGTCTTGCT 59.927 52.632 0.21 0.00 36.62 3.91
201 202 0.537143 TTGGCATCGGTGTCTTGCTT 60.537 50.000 0.21 0.00 36.62 3.91
202 203 0.955428 TGGCATCGGTGTCTTGCTTC 60.955 55.000 0.21 0.00 36.62 3.86
203 204 1.648467 GGCATCGGTGTCTTGCTTCC 61.648 60.000 0.00 0.00 36.62 3.46
204 205 1.648467 GCATCGGTGTCTTGCTTCCC 61.648 60.000 0.00 0.00 33.61 3.97
205 206 1.026718 CATCGGTGTCTTGCTTCCCC 61.027 60.000 0.00 0.00 0.00 4.81
206 207 1.201429 ATCGGTGTCTTGCTTCCCCT 61.201 55.000 0.00 0.00 0.00 4.79
207 208 1.073199 CGGTGTCTTGCTTCCCCTT 59.927 57.895 0.00 0.00 0.00 3.95
208 209 0.955919 CGGTGTCTTGCTTCCCCTTC 60.956 60.000 0.00 0.00 0.00 3.46
209 210 0.609406 GGTGTCTTGCTTCCCCTTCC 60.609 60.000 0.00 0.00 0.00 3.46
210 211 0.609406 GTGTCTTGCTTCCCCTTCCC 60.609 60.000 0.00 0.00 0.00 3.97
211 212 1.000771 GTCTTGCTTCCCCTTCCCC 60.001 63.158 0.00 0.00 0.00 4.81
212 213 1.151587 TCTTGCTTCCCCTTCCCCT 60.152 57.895 0.00 0.00 0.00 4.79
213 214 0.776080 TCTTGCTTCCCCTTCCCCTT 60.776 55.000 0.00 0.00 0.00 3.95
214 215 0.323816 CTTGCTTCCCCTTCCCCTTC 60.324 60.000 0.00 0.00 0.00 3.46
215 216 1.800229 TTGCTTCCCCTTCCCCTTCC 61.800 60.000 0.00 0.00 0.00 3.46
216 217 2.997584 GCTTCCCCTTCCCCTTCCC 61.998 68.421 0.00 0.00 0.00 3.97
217 218 1.543896 CTTCCCCTTCCCCTTCCCA 60.544 63.158 0.00 0.00 0.00 4.37
218 219 1.071745 TTCCCCTTCCCCTTCCCAA 60.072 57.895 0.00 0.00 0.00 4.12
219 220 0.706583 TTCCCCTTCCCCTTCCCAAA 60.707 55.000 0.00 0.00 0.00 3.28
220 221 1.078528 CCCCTTCCCCTTCCCAAAC 59.921 63.158 0.00 0.00 0.00 2.93
221 222 1.735455 CCCCTTCCCCTTCCCAAACA 61.735 60.000 0.00 0.00 0.00 2.83
222 223 0.189822 CCCTTCCCCTTCCCAAACAA 59.810 55.000 0.00 0.00 0.00 2.83
223 224 1.632589 CCTTCCCCTTCCCAAACAAG 58.367 55.000 0.00 0.00 0.00 3.16
224 225 0.969149 CTTCCCCTTCCCAAACAAGC 59.031 55.000 0.00 0.00 0.00 4.01
225 226 0.471022 TTCCCCTTCCCAAACAAGCC 60.471 55.000 0.00 0.00 0.00 4.35
226 227 1.152355 CCCCTTCCCAAACAAGCCA 60.152 57.895 0.00 0.00 0.00 4.75
227 228 0.762461 CCCCTTCCCAAACAAGCCAA 60.762 55.000 0.00 0.00 0.00 4.52
228 229 0.392706 CCCTTCCCAAACAAGCCAAC 59.607 55.000 0.00 0.00 0.00 3.77
229 230 1.118838 CCTTCCCAAACAAGCCAACA 58.881 50.000 0.00 0.00 0.00 3.33
230 231 1.484240 CCTTCCCAAACAAGCCAACAA 59.516 47.619 0.00 0.00 0.00 2.83
231 232 2.104622 CCTTCCCAAACAAGCCAACAAT 59.895 45.455 0.00 0.00 0.00 2.71
232 233 2.906691 TCCCAAACAAGCCAACAATG 57.093 45.000 0.00 0.00 0.00 2.82
244 245 2.233271 CCAACAATGGCTATGGCTAGG 58.767 52.381 0.00 0.00 40.58 3.02
245 246 2.233271 CAACAATGGCTATGGCTAGGG 58.767 52.381 0.00 0.00 38.73 3.53
246 247 1.522900 ACAATGGCTATGGCTAGGGT 58.477 50.000 0.00 0.00 38.73 4.34
247 248 1.421646 ACAATGGCTATGGCTAGGGTC 59.578 52.381 0.00 0.00 38.73 4.46
248 249 1.701847 CAATGGCTATGGCTAGGGTCT 59.298 52.381 0.00 0.00 38.73 3.85
249 250 1.650528 ATGGCTATGGCTAGGGTCTC 58.349 55.000 0.00 0.00 38.73 3.36
250 251 0.563173 TGGCTATGGCTAGGGTCTCT 59.437 55.000 0.00 0.00 38.73 3.10
251 252 0.972883 GGCTATGGCTAGGGTCTCTG 59.027 60.000 0.00 0.00 38.73 3.35
252 253 1.710816 GCTATGGCTAGGGTCTCTGT 58.289 55.000 0.00 0.00 35.22 3.41
253 254 1.616374 GCTATGGCTAGGGTCTCTGTC 59.384 57.143 0.00 0.00 35.22 3.51
254 255 1.883275 CTATGGCTAGGGTCTCTGTCG 59.117 57.143 0.00 0.00 0.00 4.35
255 256 1.395826 ATGGCTAGGGTCTCTGTCGC 61.396 60.000 0.00 0.00 0.00 5.19
256 257 2.787567 GGCTAGGGTCTCTGTCGCC 61.788 68.421 0.00 0.00 0.00 5.54
257 258 3.111939 CTAGGGTCTCTGTCGCCG 58.888 66.667 0.00 0.00 0.00 6.46
258 259 2.439701 TAGGGTCTCTGTCGCCGG 60.440 66.667 0.00 0.00 0.00 6.13
283 284 3.264897 GCGGCGTGCCTAGATGTG 61.265 66.667 9.37 0.00 37.76 3.21
284 285 2.586079 CGGCGTGCCTAGATGTGG 60.586 66.667 9.55 0.00 0.00 4.17
285 286 2.900273 GGCGTGCCTAGATGTGGA 59.100 61.111 2.98 0.00 0.00 4.02
286 287 1.521681 GGCGTGCCTAGATGTGGAC 60.522 63.158 2.98 0.00 0.00 4.02
287 288 1.878522 GCGTGCCTAGATGTGGACG 60.879 63.158 6.44 6.44 34.08 4.79
288 289 1.226974 CGTGCCTAGATGTGGACGG 60.227 63.158 3.45 0.00 0.00 4.79
289 290 1.144057 GTGCCTAGATGTGGACGGG 59.856 63.158 0.00 0.00 0.00 5.28
290 291 1.001120 TGCCTAGATGTGGACGGGA 59.999 57.895 0.00 0.00 0.00 5.14
291 292 1.043116 TGCCTAGATGTGGACGGGAG 61.043 60.000 0.00 0.00 0.00 4.30
302 303 2.203182 ACGGGAGTGGGAAGTGGA 59.797 61.111 0.00 0.00 44.82 4.02
303 304 1.229529 ACGGGAGTGGGAAGTGGAT 60.230 57.895 0.00 0.00 44.82 3.41
304 305 1.221840 CGGGAGTGGGAAGTGGATG 59.778 63.158 0.00 0.00 0.00 3.51
305 306 1.264749 CGGGAGTGGGAAGTGGATGA 61.265 60.000 0.00 0.00 0.00 2.92
306 307 0.543749 GGGAGTGGGAAGTGGATGAG 59.456 60.000 0.00 0.00 0.00 2.90
307 308 0.107459 GGAGTGGGAAGTGGATGAGC 60.107 60.000 0.00 0.00 0.00 4.26
308 309 0.107459 GAGTGGGAAGTGGATGAGCC 60.107 60.000 0.00 0.00 37.10 4.70
309 310 1.077429 GTGGGAAGTGGATGAGCCC 60.077 63.158 0.00 0.00 39.29 5.19
310 311 2.308722 TGGGAAGTGGATGAGCCCC 61.309 63.158 0.00 0.00 38.02 5.80
311 312 2.597903 GGAAGTGGATGAGCCCCC 59.402 66.667 0.00 0.00 34.97 5.40
312 313 2.003548 GGAAGTGGATGAGCCCCCT 61.004 63.158 0.00 0.00 34.97 4.79
313 314 1.529309 GAAGTGGATGAGCCCCCTC 59.471 63.158 0.00 0.00 38.62 4.30
314 315 1.988982 GAAGTGGATGAGCCCCCTCC 61.989 65.000 0.00 0.00 37.29 4.30
315 316 3.493303 GTGGATGAGCCCCCTCCC 61.493 72.222 0.00 0.00 37.29 4.30
316 317 4.843331 TGGATGAGCCCCCTCCCC 62.843 72.222 0.00 0.00 37.29 4.81
345 346 4.010575 CCCCCACGCTTGCATTTA 57.989 55.556 0.00 0.00 0.00 1.40
346 347 2.271940 CCCCCACGCTTGCATTTAA 58.728 52.632 0.00 0.00 0.00 1.52
347 348 0.605589 CCCCCACGCTTGCATTTAAA 59.394 50.000 0.00 0.00 0.00 1.52
348 349 1.001406 CCCCCACGCTTGCATTTAAAA 59.999 47.619 0.00 0.00 0.00 1.52
349 350 2.548920 CCCCCACGCTTGCATTTAAAAA 60.549 45.455 0.00 0.00 0.00 1.94
350 351 2.736192 CCCCACGCTTGCATTTAAAAAG 59.264 45.455 0.00 0.00 0.00 2.27
351 352 3.553922 CCCCACGCTTGCATTTAAAAAGA 60.554 43.478 2.90 0.00 0.00 2.52
352 353 3.428534 CCCACGCTTGCATTTAAAAAGAC 59.571 43.478 2.90 0.00 0.00 3.01
353 354 3.119463 CCACGCTTGCATTTAAAAAGACG 59.881 43.478 2.90 7.48 0.00 4.18
354 355 3.728718 CACGCTTGCATTTAAAAAGACGT 59.271 39.130 11.40 11.40 35.56 4.34
355 356 3.728718 ACGCTTGCATTTAAAAAGACGTG 59.271 39.130 14.21 1.57 34.66 4.49
356 357 3.119463 CGCTTGCATTTAAAAAGACGTGG 59.881 43.478 0.00 0.00 0.00 4.94
357 358 4.295051 GCTTGCATTTAAAAAGACGTGGA 58.705 39.130 0.00 0.00 0.00 4.02
358 359 4.148174 GCTTGCATTTAAAAAGACGTGGAC 59.852 41.667 0.00 0.00 0.00 4.02
359 360 5.508200 TTGCATTTAAAAAGACGTGGACT 57.492 34.783 0.00 0.00 0.00 3.85
360 361 5.103290 TGCATTTAAAAAGACGTGGACTC 57.897 39.130 0.00 0.00 0.00 3.36
361 362 4.023536 TGCATTTAAAAAGACGTGGACTCC 60.024 41.667 0.00 0.00 0.00 3.85
362 363 4.708601 CATTTAAAAAGACGTGGACTCCG 58.291 43.478 0.00 0.00 0.00 4.63
363 364 2.443887 TAAAAAGACGTGGACTCCGG 57.556 50.000 0.00 0.00 0.00 5.14
364 365 0.754472 AAAAAGACGTGGACTCCGGA 59.246 50.000 2.93 2.93 0.00 5.14
365 366 0.033090 AAAAGACGTGGACTCCGGAC 59.967 55.000 0.00 0.00 0.00 4.79
366 367 1.111116 AAAGACGTGGACTCCGGACA 61.111 55.000 0.00 0.00 0.00 4.02
367 368 1.803366 AAGACGTGGACTCCGGACAC 61.803 60.000 12.50 12.50 0.00 3.67
368 369 2.203451 ACGTGGACTCCGGACACT 60.203 61.111 18.39 6.13 33.13 3.55
369 370 1.803366 GACGTGGACTCCGGACACTT 61.803 60.000 18.39 11.28 33.13 3.16
370 371 1.080705 CGTGGACTCCGGACACTTC 60.081 63.158 18.39 5.77 33.13 3.01
371 372 1.292541 GTGGACTCCGGACACTTCC 59.707 63.158 14.69 11.73 38.77 3.46
372 373 1.152419 TGGACTCCGGACACTTCCA 60.152 57.895 13.11 13.11 43.00 3.53
373 374 1.185618 TGGACTCCGGACACTTCCAG 61.186 60.000 13.11 0.00 43.00 3.86
374 375 1.186267 GGACTCCGGACACTTCCAGT 61.186 60.000 0.00 0.00 43.00 4.00
382 383 2.113774 CACTTCCAGTGGCTGCCA 59.886 61.111 19.30 19.30 42.35 4.92
383 384 1.303888 CACTTCCAGTGGCTGCCAT 60.304 57.895 26.22 11.11 42.35 4.40
384 385 1.303888 ACTTCCAGTGGCTGCCATG 60.304 57.895 26.22 21.36 35.28 3.66
385 386 2.677524 TTCCAGTGGCTGCCATGC 60.678 61.111 26.22 13.14 35.28 4.06
407 408 2.358737 CCGAGGTGGGTGAGTTGC 60.359 66.667 0.00 0.00 0.00 4.17
408 409 2.425592 CGAGGTGGGTGAGTTGCA 59.574 61.111 0.00 0.00 0.00 4.08
409 410 1.003355 CGAGGTGGGTGAGTTGCAT 60.003 57.895 0.00 0.00 0.00 3.96
410 411 0.606401 CGAGGTGGGTGAGTTGCATT 60.606 55.000 0.00 0.00 0.00 3.56
411 412 0.883833 GAGGTGGGTGAGTTGCATTG 59.116 55.000 0.00 0.00 0.00 2.82
412 413 0.478072 AGGTGGGTGAGTTGCATTGA 59.522 50.000 0.00 0.00 0.00 2.57
413 414 1.133513 AGGTGGGTGAGTTGCATTGAA 60.134 47.619 0.00 0.00 0.00 2.69
414 415 1.895131 GGTGGGTGAGTTGCATTGAAT 59.105 47.619 0.00 0.00 0.00 2.57
415 416 3.088532 GGTGGGTGAGTTGCATTGAATA 58.911 45.455 0.00 0.00 0.00 1.75
416 417 3.701040 GGTGGGTGAGTTGCATTGAATAT 59.299 43.478 0.00 0.00 0.00 1.28
417 418 4.440525 GGTGGGTGAGTTGCATTGAATATG 60.441 45.833 0.00 0.00 0.00 1.78
418 419 4.398988 GTGGGTGAGTTGCATTGAATATGA 59.601 41.667 0.00 0.00 0.00 2.15
419 420 4.398988 TGGGTGAGTTGCATTGAATATGAC 59.601 41.667 0.00 0.00 0.00 3.06
420 421 4.202050 GGGTGAGTTGCATTGAATATGACC 60.202 45.833 0.00 0.00 0.00 4.02
421 422 4.496341 GGTGAGTTGCATTGAATATGACCG 60.496 45.833 0.00 0.00 0.00 4.79
422 423 3.065233 TGAGTTGCATTGAATATGACCGC 59.935 43.478 0.00 0.00 0.00 5.68
423 424 2.032054 AGTTGCATTGAATATGACCGCG 59.968 45.455 0.00 0.00 0.00 6.46
424 425 0.943673 TGCATTGAATATGACCGCGG 59.056 50.000 26.86 26.86 0.00 6.46
425 426 0.385974 GCATTGAATATGACCGCGGC 60.386 55.000 28.58 19.01 0.00 6.53
426 427 0.110688 CATTGAATATGACCGCGGCG 60.111 55.000 28.58 16.78 0.00 6.46
427 428 0.249699 ATTGAATATGACCGCGGCGA 60.250 50.000 28.58 12.98 0.00 5.54
428 429 0.249699 TTGAATATGACCGCGGCGAT 60.250 50.000 28.58 19.82 0.00 4.58
429 430 0.943835 TGAATATGACCGCGGCGATG 60.944 55.000 28.58 10.76 0.00 3.84
430 431 1.626654 GAATATGACCGCGGCGATGG 61.627 60.000 28.58 14.71 0.00 3.51
431 432 2.377628 AATATGACCGCGGCGATGGT 62.378 55.000 28.58 21.74 42.42 3.55
432 433 2.377628 ATATGACCGCGGCGATGGTT 62.378 55.000 28.58 2.52 38.99 3.67
442 443 2.589540 CGATGGTTGGGCAGCCTA 59.410 61.111 12.43 0.81 32.40 3.93
443 444 1.819632 CGATGGTTGGGCAGCCTAC 60.820 63.158 12.43 9.96 32.40 3.18
444 445 1.302949 GATGGTTGGGCAGCCTACA 59.697 57.895 12.43 0.15 32.40 2.74
445 446 1.000896 ATGGTTGGGCAGCCTACAC 60.001 57.895 12.43 6.49 32.40 2.90
446 447 1.788518 ATGGTTGGGCAGCCTACACA 61.789 55.000 12.43 7.25 32.40 3.72
447 448 1.971695 GGTTGGGCAGCCTACACAC 60.972 63.158 12.43 0.00 0.00 3.82
448 449 2.031919 TTGGGCAGCCTACACACG 59.968 61.111 12.43 0.00 0.00 4.49
449 450 3.545124 TTGGGCAGCCTACACACGG 62.545 63.158 12.43 0.00 0.00 4.94
450 451 4.778143 GGGCAGCCTACACACGGG 62.778 72.222 12.43 0.00 0.00 5.28
477 478 2.517875 GAATCCAGCGGCTGCCAT 60.518 61.111 24.27 14.70 44.31 4.40
478 479 2.831742 AATCCAGCGGCTGCCATG 60.832 61.111 24.27 16.00 44.31 3.66
479 480 3.348554 AATCCAGCGGCTGCCATGA 62.349 57.895 24.27 15.84 44.31 3.07
480 481 3.769369 ATCCAGCGGCTGCCATGAG 62.769 63.158 24.27 9.73 44.31 2.90
481 482 4.790962 CCAGCGGCTGCCATGAGT 62.791 66.667 24.27 0.00 44.31 3.41
482 483 3.200593 CAGCGGCTGCCATGAGTC 61.201 66.667 18.16 0.00 44.31 3.36
483 484 4.827087 AGCGGCTGCCATGAGTCG 62.827 66.667 20.29 4.17 44.05 4.18
486 487 3.785859 GGCTGCCATGAGTCGGGA 61.786 66.667 15.17 0.00 0.00 5.14
487 488 2.268920 GCTGCCATGAGTCGGGAA 59.731 61.111 4.90 0.00 0.00 3.97
488 489 1.153086 GCTGCCATGAGTCGGGAAT 60.153 57.895 4.90 0.00 0.00 3.01
489 490 1.442526 GCTGCCATGAGTCGGGAATG 61.443 60.000 4.90 0.00 0.00 2.67
490 491 1.442526 CTGCCATGAGTCGGGAATGC 61.443 60.000 4.90 0.00 0.00 3.56
491 492 2.537560 GCCATGAGTCGGGAATGCG 61.538 63.158 4.90 0.00 0.00 4.73
492 493 1.153369 CCATGAGTCGGGAATGCGT 60.153 57.895 0.00 0.00 0.00 5.24
493 494 1.431488 CCATGAGTCGGGAATGCGTG 61.431 60.000 0.00 0.00 0.00 5.34
494 495 1.815421 ATGAGTCGGGAATGCGTGC 60.815 57.895 0.00 0.00 0.00 5.34
495 496 2.434185 GAGTCGGGAATGCGTGCA 60.434 61.111 0.00 0.00 0.00 4.57
496 497 2.434884 AGTCGGGAATGCGTGCAG 60.435 61.111 0.00 0.00 0.00 4.41
497 498 2.434185 GTCGGGAATGCGTGCAGA 60.434 61.111 0.00 0.00 0.00 4.26
498 499 1.815421 GTCGGGAATGCGTGCAGAT 60.815 57.895 0.00 0.00 0.00 2.90
499 500 1.815003 TCGGGAATGCGTGCAGATG 60.815 57.895 0.00 0.00 0.00 2.90
500 501 1.815003 CGGGAATGCGTGCAGATGA 60.815 57.895 0.00 0.00 0.00 2.92
501 502 1.368345 CGGGAATGCGTGCAGATGAA 61.368 55.000 0.00 0.00 0.00 2.57
502 503 0.099436 GGGAATGCGTGCAGATGAAC 59.901 55.000 0.00 0.00 0.00 3.18
503 504 0.804364 GGAATGCGTGCAGATGAACA 59.196 50.000 0.00 0.00 0.00 3.18
504 505 1.199789 GGAATGCGTGCAGATGAACAA 59.800 47.619 0.00 0.00 0.00 2.83
505 506 2.245096 GAATGCGTGCAGATGAACAAC 58.755 47.619 0.00 0.00 0.00 3.32
506 507 0.166597 ATGCGTGCAGATGAACAACG 59.833 50.000 0.00 0.00 0.00 4.10
507 508 0.878086 TGCGTGCAGATGAACAACGA 60.878 50.000 0.00 0.00 0.00 3.85
508 509 0.234625 GCGTGCAGATGAACAACGAA 59.765 50.000 0.00 0.00 0.00 3.85
509 510 1.135972 GCGTGCAGATGAACAACGAAT 60.136 47.619 0.00 0.00 0.00 3.34
510 511 2.093625 GCGTGCAGATGAACAACGAATA 59.906 45.455 0.00 0.00 0.00 1.75
511 512 3.782250 GCGTGCAGATGAACAACGAATAG 60.782 47.826 0.00 0.00 0.00 1.73
512 513 3.612423 CGTGCAGATGAACAACGAATAGA 59.388 43.478 0.00 0.00 0.00 1.98
513 514 4.490959 CGTGCAGATGAACAACGAATAGAC 60.491 45.833 0.00 0.00 0.00 2.59
514 515 3.612423 TGCAGATGAACAACGAATAGACG 59.388 43.478 0.00 0.00 39.31 4.18
515 516 3.000322 GCAGATGAACAACGAATAGACGG 60.000 47.826 0.00 0.00 37.61 4.79
516 517 4.174009 CAGATGAACAACGAATAGACGGT 58.826 43.478 0.00 0.00 37.61 4.83
517 518 4.625742 CAGATGAACAACGAATAGACGGTT 59.374 41.667 0.00 0.00 37.61 4.44
518 519 5.120208 CAGATGAACAACGAATAGACGGTTT 59.880 40.000 0.00 0.00 37.61 3.27
519 520 5.699458 AGATGAACAACGAATAGACGGTTTT 59.301 36.000 0.00 0.00 37.61 2.43
520 521 6.869913 AGATGAACAACGAATAGACGGTTTTA 59.130 34.615 0.00 0.00 37.61 1.52
521 522 6.456447 TGAACAACGAATAGACGGTTTTAG 57.544 37.500 0.00 0.00 37.61 1.85
522 523 5.406175 TGAACAACGAATAGACGGTTTTAGG 59.594 40.000 0.00 0.00 37.61 2.69
523 524 4.248058 ACAACGAATAGACGGTTTTAGGG 58.752 43.478 0.00 0.00 37.61 3.53
524 525 4.248058 CAACGAATAGACGGTTTTAGGGT 58.752 43.478 0.00 0.00 37.61 4.34
525 526 4.541973 ACGAATAGACGGTTTTAGGGTT 57.458 40.909 0.00 0.00 37.61 4.11
526 527 4.898320 ACGAATAGACGGTTTTAGGGTTT 58.102 39.130 0.00 0.00 37.61 3.27
527 528 4.692155 ACGAATAGACGGTTTTAGGGTTTG 59.308 41.667 0.00 0.00 37.61 2.93
528 529 4.436451 CGAATAGACGGTTTTAGGGTTTGC 60.436 45.833 0.00 0.00 0.00 3.68
529 530 1.232119 AGACGGTTTTAGGGTTTGCG 58.768 50.000 0.00 0.00 0.00 4.85
530 531 0.946528 GACGGTTTTAGGGTTTGCGT 59.053 50.000 0.00 0.00 0.00 5.24
531 532 1.334556 GACGGTTTTAGGGTTTGCGTT 59.665 47.619 0.00 0.00 0.00 4.84
532 533 1.334556 ACGGTTTTAGGGTTTGCGTTC 59.665 47.619 0.00 0.00 0.00 3.95
533 534 1.335233 CGGTTTTAGGGTTTGCGTTCC 60.335 52.381 0.00 0.00 0.00 3.62
534 535 1.958579 GGTTTTAGGGTTTGCGTTCCT 59.041 47.619 0.00 0.00 34.85 3.36
535 536 2.287970 GGTTTTAGGGTTTGCGTTCCTG 60.288 50.000 0.00 0.00 32.46 3.86
536 537 1.611519 TTTAGGGTTTGCGTTCCTGG 58.388 50.000 0.00 0.00 32.46 4.45
537 538 0.891904 TTAGGGTTTGCGTTCCTGGC 60.892 55.000 0.00 0.00 32.46 4.85
538 539 2.757980 TAGGGTTTGCGTTCCTGGCC 62.758 60.000 0.00 0.00 32.46 5.36
539 540 4.038080 GGTTTGCGTTCCTGGCCG 62.038 66.667 0.00 1.83 0.00 6.13
540 541 2.975799 GTTTGCGTTCCTGGCCGA 60.976 61.111 0.00 0.00 0.00 5.54
541 542 2.033448 TTTGCGTTCCTGGCCGAT 59.967 55.556 0.00 0.00 0.00 4.18
542 543 2.331893 TTTGCGTTCCTGGCCGATG 61.332 57.895 0.00 0.00 0.00 3.84
543 544 3.545124 TTGCGTTCCTGGCCGATGT 62.545 57.895 0.00 0.00 0.00 3.06
544 545 2.746277 GCGTTCCTGGCCGATGTT 60.746 61.111 0.00 0.00 0.00 2.71
545 546 2.332654 GCGTTCCTGGCCGATGTTT 61.333 57.895 0.00 0.00 0.00 2.83
546 547 1.794222 CGTTCCTGGCCGATGTTTC 59.206 57.895 0.00 0.00 0.00 2.78
547 548 1.794222 GTTCCTGGCCGATGTTTCG 59.206 57.895 0.00 0.00 45.08 3.46
551 552 2.046700 TGGCCGATGTTTCGACCC 60.047 61.111 0.00 0.00 46.28 4.46
552 553 2.796483 CTGGCCGATGTTTCGACCCA 62.796 60.000 0.00 3.61 46.28 4.51
553 554 2.398840 TGGCCGATGTTTCGACCCAA 62.399 55.000 0.00 0.00 46.28 4.12
554 555 3.864582 TGGCCGATGTTTCGACCCAAA 62.865 52.381 0.00 0.00 46.28 3.28
556 557 5.753274 TGGCCGATGTTTCGACCCAAATA 62.753 47.826 0.00 0.00 46.28 1.40
562 563 4.212213 TGTTTCGACCCAAATAAACACG 57.788 40.909 0.00 0.00 37.02 4.49
563 564 2.973419 TTCGACCCAAATAAACACGC 57.027 45.000 0.00 0.00 0.00 5.34
564 565 1.880271 TCGACCCAAATAAACACGCA 58.120 45.000 0.00 0.00 0.00 5.24
565 566 1.532007 TCGACCCAAATAAACACGCAC 59.468 47.619 0.00 0.00 0.00 5.34
566 567 1.723384 CGACCCAAATAAACACGCACG 60.723 52.381 0.00 0.00 0.00 5.34
567 568 0.594110 ACCCAAATAAACACGCACGG 59.406 50.000 0.00 0.00 0.00 4.94
568 569 0.875728 CCCAAATAAACACGCACGGA 59.124 50.000 0.00 0.00 0.00 4.69
569 570 1.470890 CCCAAATAAACACGCACGGAT 59.529 47.619 0.00 0.00 0.00 4.18
570 571 2.477189 CCCAAATAAACACGCACGGATC 60.477 50.000 0.00 0.00 0.00 3.36
571 572 2.160615 CCAAATAAACACGCACGGATCA 59.839 45.455 0.00 0.00 0.00 2.92
572 573 3.365465 CCAAATAAACACGCACGGATCAA 60.365 43.478 0.00 0.00 0.00 2.57
573 574 4.222886 CAAATAAACACGCACGGATCAAA 58.777 39.130 0.00 0.00 0.00 2.69
574 575 4.695217 AATAAACACGCACGGATCAAAT 57.305 36.364 0.00 0.00 0.00 2.32
575 576 2.330231 AAACACGCACGGATCAAATG 57.670 45.000 0.00 0.00 0.00 2.32
576 577 1.518325 AACACGCACGGATCAAATGA 58.482 45.000 0.00 0.00 0.00 2.57
577 578 1.518325 ACACGCACGGATCAAATGAA 58.482 45.000 0.00 0.00 0.00 2.57
578 579 2.083774 ACACGCACGGATCAAATGAAT 58.916 42.857 0.00 0.00 0.00 2.57
579 580 2.095853 ACACGCACGGATCAAATGAATC 59.904 45.455 0.00 0.00 0.00 2.52
580 581 1.327460 ACGCACGGATCAAATGAATCG 59.673 47.619 0.00 7.05 0.00 3.34
581 582 1.333169 CGCACGGATCAAATGAATCGG 60.333 52.381 11.45 6.40 0.00 4.18
582 583 1.597937 GCACGGATCAAATGAATCGGC 60.598 52.381 11.45 8.79 0.00 5.54
583 584 0.937304 ACGGATCAAATGAATCGGCG 59.063 50.000 0.00 0.00 0.00 6.46
584 585 0.384725 CGGATCAAATGAATCGGCGC 60.385 55.000 0.00 0.00 0.00 6.53
585 586 0.384725 GGATCAAATGAATCGGCGCG 60.385 55.000 0.00 0.00 0.00 6.86
586 587 0.304705 GATCAAATGAATCGGCGCGT 59.695 50.000 8.43 0.00 0.00 6.01
587 588 0.732571 ATCAAATGAATCGGCGCGTT 59.267 45.000 8.43 0.00 0.00 4.84
588 589 1.360820 TCAAATGAATCGGCGCGTTA 58.639 45.000 8.43 0.00 0.00 3.18
589 590 1.732809 TCAAATGAATCGGCGCGTTAA 59.267 42.857 8.43 0.00 0.00 2.01
590 591 2.159824 TCAAATGAATCGGCGCGTTAAA 59.840 40.909 8.43 0.00 0.00 1.52
591 592 2.452006 AATGAATCGGCGCGTTAAAG 57.548 45.000 8.43 0.00 0.00 1.85
592 593 1.365699 ATGAATCGGCGCGTTAAAGT 58.634 45.000 8.43 0.00 0.00 2.66
593 594 1.149987 TGAATCGGCGCGTTAAAGTT 58.850 45.000 8.43 0.00 0.00 2.66
594 595 1.136197 TGAATCGGCGCGTTAAAGTTG 60.136 47.619 8.43 0.00 0.00 3.16
595 596 0.453782 AATCGGCGCGTTAAAGTTGC 60.454 50.000 8.43 0.55 0.00 4.17
596 597 1.296056 ATCGGCGCGTTAAAGTTGCT 61.296 50.000 8.43 0.00 0.00 3.91
597 598 1.509162 CGGCGCGTTAAAGTTGCTC 60.509 57.895 8.43 0.00 0.00 4.26
598 599 1.866925 GGCGCGTTAAAGTTGCTCT 59.133 52.632 8.43 0.00 0.00 4.09
599 600 0.179222 GGCGCGTTAAAGTTGCTCTC 60.179 55.000 8.43 0.00 0.00 3.20
600 601 0.511221 GCGCGTTAAAGTTGCTCTCA 59.489 50.000 8.43 0.00 0.00 3.27
601 602 1.462541 GCGCGTTAAAGTTGCTCTCAG 60.463 52.381 8.43 0.00 0.00 3.35
602 603 2.058798 CGCGTTAAAGTTGCTCTCAGA 58.941 47.619 0.00 0.00 0.00 3.27
617 618 0.318699 TCAGAAACACGACGAGCTGG 60.319 55.000 0.00 0.00 0.00 4.85
824 837 0.883370 CTCCCGGCTATAAAACCCGC 60.883 60.000 0.00 0.00 40.65 6.13
927 940 1.268283 AAGGCCTAGCACCACTCTCC 61.268 60.000 5.16 0.00 0.00 3.71
1363 1376 0.458716 GAGCTGCTACCACGAGTTCC 60.459 60.000 0.15 0.00 0.00 3.62
1663 1679 1.984570 CTCTCGGTCAAGGGAGCCA 60.985 63.158 0.00 0.00 38.30 4.75
2138 2170 7.650903 GTCACCCGTCGATTAATTACTTAATCT 59.349 37.037 18.20 2.15 45.86 2.40
2175 2215 2.586258 AGATGCCGTGTAAGCAGTAG 57.414 50.000 0.00 0.00 44.90 2.57
2212 2255 0.598065 CGCCCAAGTGAAGGAAAAGG 59.402 55.000 0.00 0.00 0.00 3.11
2230 2276 3.825908 AGGCAAGAAAAGGGTCCAATA 57.174 42.857 0.00 0.00 0.00 1.90
2246 2302 3.055675 TCCAATACCGAACTTGGATCGTT 60.056 43.478 8.03 0.00 44.56 3.85
2248 2304 3.604875 ATACCGAACTTGGATCGTTGT 57.395 42.857 0.00 0.00 38.60 3.32
2249 2305 4.724074 ATACCGAACTTGGATCGTTGTA 57.276 40.909 0.00 0.00 38.60 2.41
2250 2306 2.955614 ACCGAACTTGGATCGTTGTAG 58.044 47.619 0.00 0.00 38.60 2.74
2251 2307 1.659098 CCGAACTTGGATCGTTGTAGC 59.341 52.381 0.00 0.00 38.60 3.58
2252 2308 2.607187 CGAACTTGGATCGTTGTAGCT 58.393 47.619 0.00 0.00 35.64 3.32
2253 2309 3.428452 CCGAACTTGGATCGTTGTAGCTA 60.428 47.826 0.00 0.00 38.60 3.32
2254 2310 3.791887 CGAACTTGGATCGTTGTAGCTAG 59.208 47.826 0.00 0.00 35.64 3.42
2255 2311 4.674623 CGAACTTGGATCGTTGTAGCTAGT 60.675 45.833 0.00 0.00 35.64 2.57
2256 2312 4.111375 ACTTGGATCGTTGTAGCTAGTG 57.889 45.455 0.00 0.00 0.00 2.74
2257 2313 2.579207 TGGATCGTTGTAGCTAGTGC 57.421 50.000 0.00 0.00 40.05 4.40
2305 2361 8.419442 CGGAAAAATAATACTCCTACCACTACT 58.581 37.037 0.00 0.00 0.00 2.57
2306 2362 9.543783 GGAAAAATAATACTCCTACCACTACTG 57.456 37.037 0.00 0.00 0.00 2.74
2316 2374 3.068307 CCTACCACTACTGCTCCATGTAC 59.932 52.174 0.00 0.00 0.00 2.90
2333 2391 8.321650 TCCATGTACGTATGTATATCGTGTTA 57.678 34.615 0.00 0.00 38.27 2.41
2357 2421 3.888323 TCATTGTACTTGCTTGCAAAGGA 59.112 39.130 9.39 0.00 46.35 3.36
2442 2519 0.323633 TGGTGTTGCATGATCAGGGG 60.324 55.000 9.76 0.00 0.00 4.79
2555 2636 0.555769 TGCTTTGGGAAGGTTCAGGT 59.444 50.000 0.00 0.00 33.34 4.00
2767 2868 0.745486 CAATGCATCAGACAGGCCGA 60.745 55.000 0.00 0.00 0.00 5.54
2805 2906 1.372582 GACGCATCATTCTTCCTGCA 58.627 50.000 0.00 0.00 34.29 4.41
2806 2907 1.063174 GACGCATCATTCTTCCTGCAC 59.937 52.381 0.00 0.00 34.29 4.57
2807 2908 0.027194 CGCATCATTCTTCCTGCACG 59.973 55.000 0.00 0.00 34.29 5.34
2808 2909 0.379669 GCATCATTCTTCCTGCACGG 59.620 55.000 0.00 0.00 34.77 4.94
2809 2910 1.742761 CATCATTCTTCCTGCACGGT 58.257 50.000 2.68 0.00 0.00 4.83
2810 2911 1.667724 CATCATTCTTCCTGCACGGTC 59.332 52.381 2.68 0.00 0.00 4.79
2811 2912 0.976641 TCATTCTTCCTGCACGGTCT 59.023 50.000 2.68 0.00 0.00 3.85
2812 2913 1.081892 CATTCTTCCTGCACGGTCTG 58.918 55.000 2.68 0.00 0.00 3.51
2820 2921 3.426568 GCACGGTCTGCTTGCCTC 61.427 66.667 0.00 0.00 43.33 4.70
2821 2922 3.114616 CACGGTCTGCTTGCCTCG 61.115 66.667 0.00 0.00 0.00 4.63
2822 2923 3.303135 ACGGTCTGCTTGCCTCGA 61.303 61.111 0.00 0.00 0.00 4.04
2823 2924 2.507992 CGGTCTGCTTGCCTCGAG 60.508 66.667 5.13 5.13 0.00 4.04
2824 2925 2.659610 GGTCTGCTTGCCTCGAGT 59.340 61.111 12.31 0.00 0.00 4.18
2825 2926 1.739562 GGTCTGCTTGCCTCGAGTG 60.740 63.158 12.31 4.07 0.00 3.51
2826 2927 2.047844 TCTGCTTGCCTCGAGTGC 60.048 61.111 12.31 14.61 0.00 4.40
2829 2930 0.390340 CTGCTTGCCTCGAGTGCTTA 60.390 55.000 21.36 11.81 0.00 3.09
2858 2959 1.135402 GTAAATTGGAAGGCACGCAGG 60.135 52.381 0.00 0.00 0.00 4.85
2860 2961 2.713531 AATTGGAAGGCACGCAGGGT 62.714 55.000 0.00 0.00 0.00 4.34
2862 2963 3.365265 GGAAGGCACGCAGGGTTG 61.365 66.667 0.00 0.00 0.00 3.77
2864 2965 2.594592 AAGGCACGCAGGGTTGTC 60.595 61.111 0.00 0.00 0.00 3.18
2865 2966 4.988598 AGGCACGCAGGGTTGTCG 62.989 66.667 0.00 0.00 0.00 4.35
2867 2968 3.712881 GCACGCAGGGTTGTCGTC 61.713 66.667 0.00 0.00 35.78 4.20
2868 2969 3.403057 CACGCAGGGTTGTCGTCG 61.403 66.667 0.00 0.00 35.78 5.12
2869 2970 3.908081 ACGCAGGGTTGTCGTCGT 61.908 61.111 0.00 0.00 33.82 4.34
2870 2971 3.103911 CGCAGGGTTGTCGTCGTC 61.104 66.667 0.00 0.00 0.00 4.20
2871 2972 3.103911 GCAGGGTTGTCGTCGTCG 61.104 66.667 0.00 0.00 38.55 5.12
2872 2973 2.333938 CAGGGTTGTCGTCGTCGT 59.666 61.111 1.33 0.00 38.33 4.34
2873 2974 1.728426 CAGGGTTGTCGTCGTCGTC 60.728 63.158 1.33 0.00 38.33 4.20
2874 2975 2.798262 GGGTTGTCGTCGTCGTCG 60.798 66.667 5.50 5.50 38.33 5.12
2875 2976 2.051882 GGTTGTCGTCGTCGTCGT 60.052 61.111 11.41 0.00 38.33 4.34
2876 2977 2.071526 GGTTGTCGTCGTCGTCGTC 61.072 63.158 11.41 6.94 38.33 4.20
2877 2978 2.128017 TTGTCGTCGTCGTCGTCG 60.128 61.111 14.18 14.18 46.06 5.12
2878 2979 2.870341 TTGTCGTCGTCGTCGTCGT 61.870 57.895 18.44 0.00 45.27 4.34
2879 2980 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
2880 2981 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
2881 2982 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
2882 2983 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
2883 2984 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
2884 2985 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
2885 2986 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
2886 2987 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
2887 2988 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
2888 2989 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
2889 2990 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
2890 2991 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
2891 2992 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
2905 3006 1.582953 CGTCGTCGTTGTTGTTGTACA 59.417 47.619 0.00 0.00 0.00 2.90
2907 3008 3.421560 CGTCGTCGTTGTTGTTGTACATA 59.578 43.478 0.00 0.00 0.00 2.29
2933 3034 1.165907 TTGCTTGGTTGCCTGTCTCG 61.166 55.000 0.00 0.00 0.00 4.04
2940 3041 4.680237 TGCCTGTCTCGCCAACCG 62.680 66.667 0.00 0.00 38.61 4.44
2964 3065 4.530857 GGCGGCTGGCATCTACGT 62.531 66.667 15.36 0.00 46.16 3.57
2965 3066 2.415843 GCGGCTGGCATCTACGTA 59.584 61.111 1.08 0.00 42.87 3.57
2966 3067 1.227147 GCGGCTGGCATCTACGTAA 60.227 57.895 1.08 0.00 42.87 3.18
2967 3068 0.600255 GCGGCTGGCATCTACGTAAT 60.600 55.000 1.08 0.00 42.87 1.89
2968 3069 1.865865 CGGCTGGCATCTACGTAATT 58.134 50.000 1.08 0.00 0.00 1.40
3006 3107 3.800531 ACATCATGCGTGATCATCTGAA 58.199 40.909 18.67 0.00 43.14 3.02
3012 3113 2.674852 TGCGTGATCATCTGAAAAGAGC 59.325 45.455 0.00 0.00 0.00 4.09
3018 3119 4.100653 TGATCATCTGAAAAGAGCCTCGAT 59.899 41.667 0.00 0.00 0.00 3.59
3037 3138 3.140814 GGCCGCATTGGGAAGTCC 61.141 66.667 1.69 0.00 38.63 3.85
3057 3158 2.427812 CCAGCCACAATGCACATGATAA 59.572 45.455 0.00 0.00 0.00 1.75
3058 3159 3.490249 CCAGCCACAATGCACATGATAAG 60.490 47.826 0.00 0.00 0.00 1.73
3059 3160 3.129813 CAGCCACAATGCACATGATAAGT 59.870 43.478 0.00 0.00 0.00 2.24
3060 3161 3.379372 AGCCACAATGCACATGATAAGTC 59.621 43.478 0.00 0.00 0.00 3.01
3061 3162 3.789791 GCCACAATGCACATGATAAGTCG 60.790 47.826 0.00 0.00 0.00 4.18
3062 3163 3.374988 CCACAATGCACATGATAAGTCGT 59.625 43.478 0.00 0.00 0.00 4.34
3063 3164 4.142622 CCACAATGCACATGATAAGTCGTT 60.143 41.667 0.00 0.00 0.00 3.85
3064 3165 4.789629 CACAATGCACATGATAAGTCGTTG 59.210 41.667 0.00 2.47 0.00 4.10
3065 3166 3.680642 ATGCACATGATAAGTCGTTGC 57.319 42.857 0.00 0.00 32.67 4.17
3066 3167 2.698803 TGCACATGATAAGTCGTTGCT 58.301 42.857 0.00 0.00 32.96 3.91
3067 3168 3.073678 TGCACATGATAAGTCGTTGCTT 58.926 40.909 0.00 0.00 32.96 3.91
3068 3169 3.120234 TGCACATGATAAGTCGTTGCTTG 60.120 43.478 0.00 0.00 32.96 4.01
3069 3170 3.728864 GCACATGATAAGTCGTTGCTTGG 60.729 47.826 0.00 0.00 31.01 3.61
3070 3171 3.436704 CACATGATAAGTCGTTGCTTGGT 59.563 43.478 0.00 0.00 0.00 3.67
3071 3172 3.684788 ACATGATAAGTCGTTGCTTGGTC 59.315 43.478 0.00 0.00 0.00 4.02
3072 3173 2.333926 TGATAAGTCGTTGCTTGGTCG 58.666 47.619 0.00 0.00 0.00 4.79
3073 3174 1.060698 GATAAGTCGTTGCTTGGTCGC 59.939 52.381 0.00 0.00 0.00 5.19
3074 3175 0.947180 TAAGTCGTTGCTTGGTCGCC 60.947 55.000 0.00 0.00 0.00 5.54
3075 3176 2.660258 AAGTCGTTGCTTGGTCGCCT 62.660 55.000 0.00 0.00 0.00 5.52
3076 3177 2.664851 TCGTTGCTTGGTCGCCTG 60.665 61.111 0.00 0.00 0.00 4.85
3077 3178 2.972505 CGTTGCTTGGTCGCCTGT 60.973 61.111 0.00 0.00 0.00 4.00
3078 3179 2.639286 GTTGCTTGGTCGCCTGTG 59.361 61.111 0.00 0.00 0.00 3.66
3079 3180 1.891919 GTTGCTTGGTCGCCTGTGA 60.892 57.895 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.436998 CACCTCGACTCCCACCGC 62.437 72.222 0.00 0.00 0.00 5.68
6 7 3.302347 CTGGCACCTCGACTCCCAC 62.302 68.421 0.00 0.00 0.00 4.61
7 8 2.997315 CTGGCACCTCGACTCCCA 60.997 66.667 0.00 0.00 0.00 4.37
10 11 4.803426 CGGCTGGCACCTCGACTC 62.803 72.222 1.08 0.00 0.00 3.36
15 16 4.767255 CTCCACGGCTGGCACCTC 62.767 72.222 1.08 0.00 37.49 3.85
18 19 4.767255 CTCCTCCACGGCTGGCAC 62.767 72.222 1.08 0.00 37.49 5.01
21 22 3.316573 GAACCTCCTCCACGGCTGG 62.317 68.421 0.00 0.00 39.23 4.85
22 23 1.831652 AAGAACCTCCTCCACGGCTG 61.832 60.000 0.00 0.00 0.00 4.85
23 24 0.252103 TAAGAACCTCCTCCACGGCT 60.252 55.000 0.00 0.00 0.00 5.52
24 25 0.831307 ATAAGAACCTCCTCCACGGC 59.169 55.000 0.00 0.00 0.00 5.68
25 26 2.236395 ACAATAAGAACCTCCTCCACGG 59.764 50.000 0.00 0.00 0.00 4.94
26 27 3.262420 CACAATAAGAACCTCCTCCACG 58.738 50.000 0.00 0.00 0.00 4.94
27 28 3.010420 GCACAATAAGAACCTCCTCCAC 58.990 50.000 0.00 0.00 0.00 4.02
28 29 2.026262 GGCACAATAAGAACCTCCTCCA 60.026 50.000 0.00 0.00 0.00 3.86
29 30 2.026262 TGGCACAATAAGAACCTCCTCC 60.026 50.000 0.00 0.00 31.92 4.30
30 31 3.350219 TGGCACAATAAGAACCTCCTC 57.650 47.619 0.00 0.00 31.92 3.71
45 46 1.815421 CGTCCTGCTACCATGGCAC 60.815 63.158 13.04 1.42 35.71 5.01
46 47 2.584064 CGTCCTGCTACCATGGCA 59.416 61.111 13.04 2.94 38.10 4.92
47 48 2.897350 GCGTCCTGCTACCATGGC 60.897 66.667 13.04 0.00 41.73 4.40
48 49 2.586079 CGCGTCCTGCTACCATGG 60.586 66.667 11.19 11.19 43.27 3.66
49 50 2.011741 TACCGCGTCCTGCTACCATG 62.012 60.000 4.92 0.00 43.27 3.66
50 51 1.755395 TACCGCGTCCTGCTACCAT 60.755 57.895 4.92 0.00 43.27 3.55
51 52 2.361483 TACCGCGTCCTGCTACCA 60.361 61.111 4.92 0.00 43.27 3.25
52 53 2.103736 GTACCGCGTCCTGCTACC 59.896 66.667 4.92 0.00 43.27 3.18
53 54 1.226603 CAGTACCGCGTCCTGCTAC 60.227 63.158 4.92 0.00 43.27 3.58
54 55 1.246056 AACAGTACCGCGTCCTGCTA 61.246 55.000 4.92 0.00 43.27 3.49
55 56 2.571216 AACAGTACCGCGTCCTGCT 61.571 57.895 4.92 0.00 43.27 4.24
56 57 2.048503 AACAGTACCGCGTCCTGC 60.049 61.111 4.92 0.00 41.47 4.85
57 58 1.736645 CCAACAGTACCGCGTCCTG 60.737 63.158 4.92 10.29 0.00 3.86
58 59 2.205152 ACCAACAGTACCGCGTCCT 61.205 57.895 4.92 0.00 0.00 3.85
59 60 2.025418 CACCAACAGTACCGCGTCC 61.025 63.158 4.92 0.00 0.00 4.79
60 61 2.025418 CCACCAACAGTACCGCGTC 61.025 63.158 4.92 0.00 0.00 5.19
61 62 1.462731 TACCACCAACAGTACCGCGT 61.463 55.000 4.92 0.00 0.00 6.01
62 63 1.010419 GTACCACCAACAGTACCGCG 61.010 60.000 0.00 0.00 34.12 6.46
63 64 0.671472 GGTACCACCAACAGTACCGC 60.671 60.000 7.15 0.00 46.60 5.68
64 65 3.520187 GGTACCACCAACAGTACCG 57.480 57.895 7.15 0.00 46.60 4.02
66 67 1.670967 GCGAGGTACCACCAACAGTAC 60.671 57.143 15.94 0.00 41.95 2.73
67 68 0.604578 GCGAGGTACCACCAACAGTA 59.395 55.000 15.94 0.00 41.95 2.74
68 69 1.370064 GCGAGGTACCACCAACAGT 59.630 57.895 15.94 0.00 41.95 3.55
69 70 1.736645 CGCGAGGTACCACCAACAG 60.737 63.158 15.94 0.00 41.95 3.16
70 71 2.340809 CGCGAGGTACCACCAACA 59.659 61.111 15.94 0.00 41.95 3.33
71 72 3.116531 GCGCGAGGTACCACCAAC 61.117 66.667 15.94 0.00 41.95 3.77
72 73 4.728102 CGCGCGAGGTACCACCAA 62.728 66.667 28.94 0.00 41.95 3.67
85 86 2.758770 TATATCCCGAAGCACCGCGC 62.759 60.000 0.00 0.00 42.91 6.86
86 87 1.007336 GTATATCCCGAAGCACCGCG 61.007 60.000 0.00 0.00 0.00 6.46
87 88 0.032952 TGTATATCCCGAAGCACCGC 59.967 55.000 0.00 0.00 0.00 5.68
88 89 1.340248 ACTGTATATCCCGAAGCACCG 59.660 52.381 0.00 0.00 0.00 4.94
89 90 2.607282 CGACTGTATATCCCGAAGCACC 60.607 54.545 0.00 0.00 0.00 5.01
90 91 2.292569 TCGACTGTATATCCCGAAGCAC 59.707 50.000 0.00 0.00 0.00 4.40
91 92 2.578786 TCGACTGTATATCCCGAAGCA 58.421 47.619 0.00 0.00 0.00 3.91
92 93 3.440872 AGATCGACTGTATATCCCGAAGC 59.559 47.826 0.00 0.00 32.84 3.86
93 94 4.201734 CGAGATCGACTGTATATCCCGAAG 60.202 50.000 0.00 0.00 43.02 3.79
94 95 3.683340 CGAGATCGACTGTATATCCCGAA 59.317 47.826 0.00 0.00 43.02 4.30
95 96 3.259902 CGAGATCGACTGTATATCCCGA 58.740 50.000 0.00 0.00 43.02 5.14
96 97 3.001414 ACGAGATCGACTGTATATCCCG 58.999 50.000 9.58 4.84 43.02 5.14
97 98 3.127203 CCACGAGATCGACTGTATATCCC 59.873 52.174 9.58 0.00 43.02 3.85
98 99 3.426426 GCCACGAGATCGACTGTATATCC 60.426 52.174 9.58 0.00 43.02 2.59
99 100 3.426426 GGCCACGAGATCGACTGTATATC 60.426 52.174 9.58 0.00 43.02 1.63
100 101 2.488545 GGCCACGAGATCGACTGTATAT 59.511 50.000 9.58 0.00 43.02 0.86
101 102 1.878088 GGCCACGAGATCGACTGTATA 59.122 52.381 9.58 0.00 43.02 1.47
102 103 0.669077 GGCCACGAGATCGACTGTAT 59.331 55.000 9.58 0.00 43.02 2.29
103 104 1.712018 CGGCCACGAGATCGACTGTA 61.712 60.000 9.58 0.00 44.60 2.74
104 105 2.885861 GGCCACGAGATCGACTGT 59.114 61.111 9.58 0.00 43.02 3.55
105 106 2.278206 CGGCCACGAGATCGACTG 60.278 66.667 9.58 0.00 44.60 3.51
106 107 3.518998 CCGGCCACGAGATCGACT 61.519 66.667 9.58 0.00 44.60 4.18
125 126 3.791586 GAGCAGAGGGGAGGGCAC 61.792 72.222 0.00 0.00 0.00 5.01
129 130 4.154347 GTGCGAGCAGAGGGGAGG 62.154 72.222 0.00 0.00 0.00 4.30
130 131 4.154347 GGTGCGAGCAGAGGGGAG 62.154 72.222 0.00 0.00 0.00 4.30
132 133 4.463879 CTGGTGCGAGCAGAGGGG 62.464 72.222 0.00 0.00 45.98 4.79
176 177 1.626654 GACACCGATGCCAACTCGTG 61.627 60.000 0.00 0.00 34.36 4.35
177 178 1.374252 GACACCGATGCCAACTCGT 60.374 57.895 0.00 0.00 34.36 4.18
178 179 0.670546 AAGACACCGATGCCAACTCG 60.671 55.000 0.00 0.00 35.92 4.18
179 180 0.798776 CAAGACACCGATGCCAACTC 59.201 55.000 0.00 0.00 0.00 3.01
180 181 1.237285 GCAAGACACCGATGCCAACT 61.237 55.000 0.00 0.00 34.03 3.16
181 182 1.210155 GCAAGACACCGATGCCAAC 59.790 57.895 0.00 0.00 34.03 3.77
182 183 0.537143 AAGCAAGACACCGATGCCAA 60.537 50.000 0.00 0.00 40.93 4.52
183 184 0.955428 GAAGCAAGACACCGATGCCA 60.955 55.000 0.00 0.00 40.93 4.92
184 185 1.648467 GGAAGCAAGACACCGATGCC 61.648 60.000 0.00 0.00 40.93 4.40
185 186 1.648467 GGGAAGCAAGACACCGATGC 61.648 60.000 0.00 0.00 40.34 3.91
186 187 1.026718 GGGGAAGCAAGACACCGATG 61.027 60.000 0.00 0.00 0.00 3.84
187 188 1.201429 AGGGGAAGCAAGACACCGAT 61.201 55.000 0.00 0.00 34.37 4.18
188 189 1.415672 AAGGGGAAGCAAGACACCGA 61.416 55.000 0.00 0.00 34.37 4.69
189 190 0.955919 GAAGGGGAAGCAAGACACCG 60.956 60.000 0.00 0.00 34.37 4.94
190 191 0.609406 GGAAGGGGAAGCAAGACACC 60.609 60.000 0.00 0.00 0.00 4.16
191 192 0.609406 GGGAAGGGGAAGCAAGACAC 60.609 60.000 0.00 0.00 0.00 3.67
192 193 1.767692 GGGAAGGGGAAGCAAGACA 59.232 57.895 0.00 0.00 0.00 3.41
193 194 1.000771 GGGGAAGGGGAAGCAAGAC 60.001 63.158 0.00 0.00 0.00 3.01
194 195 0.776080 AAGGGGAAGGGGAAGCAAGA 60.776 55.000 0.00 0.00 0.00 3.02
195 196 0.323816 GAAGGGGAAGGGGAAGCAAG 60.324 60.000 0.00 0.00 0.00 4.01
196 197 1.774300 GAAGGGGAAGGGGAAGCAA 59.226 57.895 0.00 0.00 0.00 3.91
197 198 2.238701 GGAAGGGGAAGGGGAAGCA 61.239 63.158 0.00 0.00 0.00 3.91
198 199 2.684104 GGAAGGGGAAGGGGAAGC 59.316 66.667 0.00 0.00 0.00 3.86
199 200 1.146544 TTGGGAAGGGGAAGGGGAAG 61.147 60.000 0.00 0.00 0.00 3.46
200 201 0.706583 TTTGGGAAGGGGAAGGGGAA 60.707 55.000 0.00 0.00 0.00 3.97
201 202 1.071745 TTTGGGAAGGGGAAGGGGA 60.072 57.895 0.00 0.00 0.00 4.81
202 203 1.078528 GTTTGGGAAGGGGAAGGGG 59.921 63.158 0.00 0.00 0.00 4.79
203 204 0.189822 TTGTTTGGGAAGGGGAAGGG 59.810 55.000 0.00 0.00 0.00 3.95
204 205 1.632589 CTTGTTTGGGAAGGGGAAGG 58.367 55.000 0.00 0.00 0.00 3.46
205 206 0.969149 GCTTGTTTGGGAAGGGGAAG 59.031 55.000 0.00 0.00 0.00 3.46
206 207 0.471022 GGCTTGTTTGGGAAGGGGAA 60.471 55.000 0.00 0.00 0.00 3.97
207 208 1.155155 GGCTTGTTTGGGAAGGGGA 59.845 57.895 0.00 0.00 0.00 4.81
208 209 0.762461 TTGGCTTGTTTGGGAAGGGG 60.762 55.000 0.00 0.00 0.00 4.79
209 210 0.392706 GTTGGCTTGTTTGGGAAGGG 59.607 55.000 0.00 0.00 0.00 3.95
210 211 1.118838 TGTTGGCTTGTTTGGGAAGG 58.881 50.000 0.00 0.00 0.00 3.46
211 212 2.977772 TTGTTGGCTTGTTTGGGAAG 57.022 45.000 0.00 0.00 0.00 3.46
212 213 2.158842 CCATTGTTGGCTTGTTTGGGAA 60.159 45.455 0.00 0.00 35.85 3.97
213 214 1.415659 CCATTGTTGGCTTGTTTGGGA 59.584 47.619 0.00 0.00 35.85 4.37
214 215 1.881591 CCATTGTTGGCTTGTTTGGG 58.118 50.000 0.00 0.00 35.85 4.12
224 225 2.233271 CCTAGCCATAGCCATTGTTGG 58.767 52.381 0.00 0.00 46.66 3.77
225 226 2.233271 CCCTAGCCATAGCCATTGTTG 58.767 52.381 0.00 0.00 41.25 3.33
226 227 1.852965 ACCCTAGCCATAGCCATTGTT 59.147 47.619 0.00 0.00 41.25 2.83
227 228 1.421646 GACCCTAGCCATAGCCATTGT 59.578 52.381 0.00 0.00 41.25 2.71
228 229 1.701847 AGACCCTAGCCATAGCCATTG 59.298 52.381 0.00 0.00 41.25 2.82
229 230 1.981495 GAGACCCTAGCCATAGCCATT 59.019 52.381 0.00 0.00 41.25 3.16
230 231 1.150986 AGAGACCCTAGCCATAGCCAT 59.849 52.381 0.00 0.00 41.25 4.40
231 232 0.563173 AGAGACCCTAGCCATAGCCA 59.437 55.000 0.00 0.00 41.25 4.75
232 233 0.972883 CAGAGACCCTAGCCATAGCC 59.027 60.000 0.00 0.00 41.25 3.93
233 234 1.616374 GACAGAGACCCTAGCCATAGC 59.384 57.143 0.00 0.00 40.32 2.97
234 235 1.883275 CGACAGAGACCCTAGCCATAG 59.117 57.143 0.00 0.00 0.00 2.23
235 236 1.982660 CGACAGAGACCCTAGCCATA 58.017 55.000 0.00 0.00 0.00 2.74
236 237 1.395826 GCGACAGAGACCCTAGCCAT 61.396 60.000 0.00 0.00 0.00 4.40
237 238 2.052690 GCGACAGAGACCCTAGCCA 61.053 63.158 0.00 0.00 0.00 4.75
238 239 2.787567 GGCGACAGAGACCCTAGCC 61.788 68.421 0.00 0.00 33.94 3.93
239 240 2.809010 GGCGACAGAGACCCTAGC 59.191 66.667 0.00 0.00 0.00 3.42
240 241 2.482333 CCGGCGACAGAGACCCTAG 61.482 68.421 9.30 0.00 0.00 3.02
241 242 2.439701 CCGGCGACAGAGACCCTA 60.440 66.667 9.30 0.00 0.00 3.53
263 264 3.917760 ATCTAGGCACGCCGCTCC 61.918 66.667 1.61 0.00 41.91 4.70
264 265 2.659897 CATCTAGGCACGCCGCTC 60.660 66.667 1.61 0.00 41.91 5.03
265 266 3.461773 ACATCTAGGCACGCCGCT 61.462 61.111 1.61 0.00 41.91 5.52
266 267 3.264897 CACATCTAGGCACGCCGC 61.265 66.667 1.61 0.00 41.95 6.53
267 268 2.586079 CCACATCTAGGCACGCCG 60.586 66.667 1.61 0.00 41.95 6.46
268 269 1.521681 GTCCACATCTAGGCACGCC 60.522 63.158 0.00 0.00 0.00 5.68
269 270 1.878522 CGTCCACATCTAGGCACGC 60.879 63.158 0.00 0.00 0.00 5.34
270 271 1.226974 CCGTCCACATCTAGGCACG 60.227 63.158 0.00 0.00 0.00 5.34
271 272 1.144057 CCCGTCCACATCTAGGCAC 59.856 63.158 0.00 0.00 0.00 5.01
272 273 1.001120 TCCCGTCCACATCTAGGCA 59.999 57.895 0.00 0.00 0.00 4.75
273 274 1.043673 ACTCCCGTCCACATCTAGGC 61.044 60.000 0.00 0.00 0.00 3.93
274 275 0.747255 CACTCCCGTCCACATCTAGG 59.253 60.000 0.00 0.00 0.00 3.02
275 276 0.747255 CCACTCCCGTCCACATCTAG 59.253 60.000 0.00 0.00 0.00 2.43
276 277 0.686441 CCCACTCCCGTCCACATCTA 60.686 60.000 0.00 0.00 0.00 1.98
277 278 1.990060 CCCACTCCCGTCCACATCT 60.990 63.158 0.00 0.00 0.00 2.90
278 279 1.550130 TTCCCACTCCCGTCCACATC 61.550 60.000 0.00 0.00 0.00 3.06
279 280 1.537889 TTCCCACTCCCGTCCACAT 60.538 57.895 0.00 0.00 0.00 3.21
280 281 2.122769 TTCCCACTCCCGTCCACA 60.123 61.111 0.00 0.00 0.00 4.17
281 282 2.214920 ACTTCCCACTCCCGTCCAC 61.215 63.158 0.00 0.00 0.00 4.02
282 283 2.203182 ACTTCCCACTCCCGTCCA 59.797 61.111 0.00 0.00 0.00 4.02
283 284 2.663196 CACTTCCCACTCCCGTCC 59.337 66.667 0.00 0.00 0.00 4.79
284 285 1.265454 ATCCACTTCCCACTCCCGTC 61.265 60.000 0.00 0.00 0.00 4.79
285 286 1.229529 ATCCACTTCCCACTCCCGT 60.230 57.895 0.00 0.00 0.00 5.28
286 287 1.221840 CATCCACTTCCCACTCCCG 59.778 63.158 0.00 0.00 0.00 5.14
287 288 0.543749 CTCATCCACTTCCCACTCCC 59.456 60.000 0.00 0.00 0.00 4.30
288 289 0.107459 GCTCATCCACTTCCCACTCC 60.107 60.000 0.00 0.00 0.00 3.85
289 290 0.107459 GGCTCATCCACTTCCCACTC 60.107 60.000 0.00 0.00 34.01 3.51
290 291 1.566298 GGGCTCATCCACTTCCCACT 61.566 60.000 0.00 0.00 36.96 4.00
291 292 1.077429 GGGCTCATCCACTTCCCAC 60.077 63.158 0.00 0.00 36.96 4.61
292 293 2.308722 GGGGCTCATCCACTTCCCA 61.309 63.158 0.00 0.00 38.72 4.37
293 294 2.597903 GGGGCTCATCCACTTCCC 59.402 66.667 0.00 0.00 34.56 3.97
294 295 1.988982 GAGGGGGCTCATCCACTTCC 61.989 65.000 0.00 0.00 41.42 3.46
295 296 1.529309 GAGGGGGCTCATCCACTTC 59.471 63.158 0.00 0.00 41.42 3.01
296 297 2.003548 GGAGGGGGCTCATCCACTT 61.004 63.158 14.34 0.00 45.15 3.16
297 298 2.367512 GGAGGGGGCTCATCCACT 60.368 66.667 14.34 0.00 45.15 4.00
328 329 0.605589 TTTAAATGCAAGCGTGGGGG 59.394 50.000 0.79 0.00 0.00 5.40
329 330 2.447244 TTTTAAATGCAAGCGTGGGG 57.553 45.000 0.79 0.00 0.00 4.96
330 331 3.428534 GTCTTTTTAAATGCAAGCGTGGG 59.571 43.478 0.79 0.00 0.00 4.61
331 332 3.119463 CGTCTTTTTAAATGCAAGCGTGG 59.881 43.478 0.79 0.00 0.00 4.94
332 333 3.728718 ACGTCTTTTTAAATGCAAGCGTG 59.271 39.130 14.21 0.00 32.71 5.34
333 334 3.728718 CACGTCTTTTTAAATGCAAGCGT 59.271 39.130 0.00 11.40 33.53 5.07
334 335 3.119463 CCACGTCTTTTTAAATGCAAGCG 59.881 43.478 0.00 10.58 0.00 4.68
335 336 4.148174 GTCCACGTCTTTTTAAATGCAAGC 59.852 41.667 0.00 0.00 0.00 4.01
336 337 5.519722 AGTCCACGTCTTTTTAAATGCAAG 58.480 37.500 0.00 0.00 0.00 4.01
337 338 5.506649 GGAGTCCACGTCTTTTTAAATGCAA 60.507 40.000 3.60 0.00 0.00 4.08
338 339 4.023536 GGAGTCCACGTCTTTTTAAATGCA 60.024 41.667 3.60 0.00 0.00 3.96
339 340 4.473199 GGAGTCCACGTCTTTTTAAATGC 58.527 43.478 3.60 0.00 0.00 3.56
340 341 4.378046 CCGGAGTCCACGTCTTTTTAAATG 60.378 45.833 10.49 0.00 0.00 2.32
341 342 3.749609 CCGGAGTCCACGTCTTTTTAAAT 59.250 43.478 10.49 0.00 0.00 1.40
342 343 3.132925 CCGGAGTCCACGTCTTTTTAAA 58.867 45.455 10.49 0.00 0.00 1.52
343 344 2.364970 TCCGGAGTCCACGTCTTTTTAA 59.635 45.455 10.49 0.00 0.00 1.52
344 345 1.962807 TCCGGAGTCCACGTCTTTTTA 59.037 47.619 10.49 0.00 0.00 1.52
345 346 0.754472 TCCGGAGTCCACGTCTTTTT 59.246 50.000 10.49 0.00 0.00 1.94
346 347 0.033090 GTCCGGAGTCCACGTCTTTT 59.967 55.000 3.06 0.00 0.00 2.27
347 348 1.111116 TGTCCGGAGTCCACGTCTTT 61.111 55.000 3.06 0.00 0.00 2.52
348 349 1.529948 TGTCCGGAGTCCACGTCTT 60.530 57.895 3.06 0.00 0.00 3.01
349 350 2.114625 TGTCCGGAGTCCACGTCT 59.885 61.111 3.06 0.00 0.00 4.18
350 351 1.803366 AAGTGTCCGGAGTCCACGTC 61.803 60.000 3.06 0.00 34.34 4.34
351 352 1.803366 GAAGTGTCCGGAGTCCACGT 61.803 60.000 3.06 8.28 34.34 4.49
352 353 1.080705 GAAGTGTCCGGAGTCCACG 60.081 63.158 3.06 0.00 34.34 4.94
353 354 1.292541 GGAAGTGTCCGGAGTCCAC 59.707 63.158 3.06 10.37 33.05 4.02
354 355 3.787394 GGAAGTGTCCGGAGTCCA 58.213 61.111 3.06 0.00 33.05 4.02
367 368 2.707849 GCATGGCAGCCACTGGAAG 61.708 63.158 19.10 3.85 35.80 3.46
368 369 2.677524 GCATGGCAGCCACTGGAA 60.678 61.111 19.10 0.00 35.80 3.53
390 391 2.358737 GCAACTCACCCACCTCGG 60.359 66.667 0.00 0.00 0.00 4.63
391 392 0.606401 AATGCAACTCACCCACCTCG 60.606 55.000 0.00 0.00 0.00 4.63
392 393 0.883833 CAATGCAACTCACCCACCTC 59.116 55.000 0.00 0.00 0.00 3.85
393 394 0.478072 TCAATGCAACTCACCCACCT 59.522 50.000 0.00 0.00 0.00 4.00
394 395 1.327303 TTCAATGCAACTCACCCACC 58.673 50.000 0.00 0.00 0.00 4.61
395 396 4.398988 TCATATTCAATGCAACTCACCCAC 59.601 41.667 0.00 0.00 0.00 4.61
396 397 4.398988 GTCATATTCAATGCAACTCACCCA 59.601 41.667 0.00 0.00 0.00 4.51
397 398 4.202050 GGTCATATTCAATGCAACTCACCC 60.202 45.833 0.00 0.00 0.00 4.61
398 399 4.496341 CGGTCATATTCAATGCAACTCACC 60.496 45.833 0.00 0.00 0.00 4.02
399 400 4.591202 CGGTCATATTCAATGCAACTCAC 58.409 43.478 0.00 0.00 0.00 3.51
400 401 3.065233 GCGGTCATATTCAATGCAACTCA 59.935 43.478 0.00 0.00 0.00 3.41
401 402 3.621794 GCGGTCATATTCAATGCAACTC 58.378 45.455 0.00 0.00 0.00 3.01
402 403 2.032054 CGCGGTCATATTCAATGCAACT 59.968 45.455 0.00 0.00 0.00 3.16
403 404 2.375110 CGCGGTCATATTCAATGCAAC 58.625 47.619 0.00 0.00 0.00 4.17
404 405 1.333308 CCGCGGTCATATTCAATGCAA 59.667 47.619 19.50 0.00 0.00 4.08
405 406 0.943673 CCGCGGTCATATTCAATGCA 59.056 50.000 19.50 0.00 0.00 3.96
406 407 0.385974 GCCGCGGTCATATTCAATGC 60.386 55.000 28.70 2.79 0.00 3.56
407 408 0.110688 CGCCGCGGTCATATTCAATG 60.111 55.000 28.70 0.00 0.00 2.82
408 409 0.249699 TCGCCGCGGTCATATTCAAT 60.250 50.000 28.70 0.00 0.00 2.57
409 410 0.249699 ATCGCCGCGGTCATATTCAA 60.250 50.000 28.70 2.03 0.00 2.69
410 411 0.943835 CATCGCCGCGGTCATATTCA 60.944 55.000 28.70 1.88 0.00 2.57
411 412 1.626654 CCATCGCCGCGGTCATATTC 61.627 60.000 28.70 6.83 0.00 1.75
412 413 1.667830 CCATCGCCGCGGTCATATT 60.668 57.895 28.70 3.02 0.00 1.28
413 414 2.048222 CCATCGCCGCGGTCATAT 60.048 61.111 28.70 12.23 0.00 1.78
414 415 3.083848 AACCATCGCCGCGGTCATA 62.084 57.895 28.70 10.25 33.17 2.15
415 416 4.467084 AACCATCGCCGCGGTCAT 62.467 61.111 28.70 16.13 33.17 3.06
424 425 3.697439 TAGGCTGCCCAACCATCGC 62.697 63.158 16.57 0.00 0.00 4.58
425 426 1.819632 GTAGGCTGCCCAACCATCG 60.820 63.158 16.57 0.00 0.00 3.84
426 427 1.032114 GTGTAGGCTGCCCAACCATC 61.032 60.000 16.57 4.36 0.00 3.51
427 428 1.000896 GTGTAGGCTGCCCAACCAT 60.001 57.895 16.57 0.00 0.00 3.55
428 429 2.434331 GTGTAGGCTGCCCAACCA 59.566 61.111 16.57 4.00 0.00 3.67
429 430 1.971695 GTGTGTAGGCTGCCCAACC 60.972 63.158 16.57 8.80 0.00 3.77
430 431 2.325082 CGTGTGTAGGCTGCCCAAC 61.325 63.158 16.57 14.67 0.00 3.77
431 432 2.031919 CGTGTGTAGGCTGCCCAA 59.968 61.111 16.57 0.17 0.00 4.12
432 433 4.015406 CCGTGTGTAGGCTGCCCA 62.015 66.667 16.57 4.00 0.00 5.36
433 434 4.778143 CCCGTGTGTAGGCTGCCC 62.778 72.222 16.57 0.80 0.00 5.36
460 461 2.517875 ATGGCAGCCGCTGGATTC 60.518 61.111 21.77 4.90 38.60 2.52
461 462 2.831742 CATGGCAGCCGCTGGATT 60.832 61.111 21.77 0.00 38.60 3.01
462 463 3.769369 CTCATGGCAGCCGCTGGAT 62.769 63.158 21.77 0.00 38.60 3.41
463 464 4.478371 CTCATGGCAGCCGCTGGA 62.478 66.667 21.77 9.39 38.60 3.86
464 465 4.790962 ACTCATGGCAGCCGCTGG 62.791 66.667 21.77 6.52 38.60 4.85
465 466 3.200593 GACTCATGGCAGCCGCTG 61.201 66.667 16.47 16.47 38.60 5.18
466 467 4.827087 CGACTCATGGCAGCCGCT 62.827 66.667 7.03 0.00 38.60 5.52
469 470 2.615227 ATTCCCGACTCATGGCAGCC 62.615 60.000 3.66 3.66 0.00 4.85
470 471 1.153086 ATTCCCGACTCATGGCAGC 60.153 57.895 0.00 0.00 0.00 5.25
471 472 1.442526 GCATTCCCGACTCATGGCAG 61.443 60.000 0.00 0.00 0.00 4.85
472 473 1.451927 GCATTCCCGACTCATGGCA 60.452 57.895 0.00 0.00 0.00 4.92
473 474 2.537560 CGCATTCCCGACTCATGGC 61.538 63.158 0.00 0.00 0.00 4.40
474 475 1.153369 ACGCATTCCCGACTCATGG 60.153 57.895 0.00 0.00 0.00 3.66
475 476 2.009108 CACGCATTCCCGACTCATG 58.991 57.895 0.00 0.00 0.00 3.07
476 477 1.815421 GCACGCATTCCCGACTCAT 60.815 57.895 0.00 0.00 0.00 2.90
477 478 2.434185 GCACGCATTCCCGACTCA 60.434 61.111 0.00 0.00 0.00 3.41
478 479 2.434185 TGCACGCATTCCCGACTC 60.434 61.111 0.00 0.00 0.00 3.36
479 480 2.244117 ATCTGCACGCATTCCCGACT 62.244 55.000 0.00 0.00 0.00 4.18
480 481 1.815421 ATCTGCACGCATTCCCGAC 60.815 57.895 0.00 0.00 0.00 4.79
481 482 1.815003 CATCTGCACGCATTCCCGA 60.815 57.895 0.00 0.00 0.00 5.14
482 483 1.368345 TTCATCTGCACGCATTCCCG 61.368 55.000 0.00 0.00 0.00 5.14
483 484 0.099436 GTTCATCTGCACGCATTCCC 59.901 55.000 0.00 0.00 0.00 3.97
484 485 0.804364 TGTTCATCTGCACGCATTCC 59.196 50.000 0.00 0.00 0.00 3.01
485 486 2.245096 GTTGTTCATCTGCACGCATTC 58.755 47.619 0.00 0.00 0.00 2.67
486 487 1.400113 CGTTGTTCATCTGCACGCATT 60.400 47.619 0.00 0.00 0.00 3.56
487 488 0.166597 CGTTGTTCATCTGCACGCAT 59.833 50.000 0.00 0.00 0.00 4.73
488 489 0.878086 TCGTTGTTCATCTGCACGCA 60.878 50.000 0.00 0.00 0.00 5.24
489 490 0.234625 TTCGTTGTTCATCTGCACGC 59.765 50.000 0.00 0.00 0.00 5.34
490 491 2.880822 ATTCGTTGTTCATCTGCACG 57.119 45.000 0.00 0.00 0.00 5.34
491 492 4.490959 CGTCTATTCGTTGTTCATCTGCAC 60.491 45.833 0.00 0.00 0.00 4.57
492 493 3.612423 CGTCTATTCGTTGTTCATCTGCA 59.388 43.478 0.00 0.00 0.00 4.41
493 494 3.000322 CCGTCTATTCGTTGTTCATCTGC 60.000 47.826 0.00 0.00 0.00 4.26
494 495 4.174009 ACCGTCTATTCGTTGTTCATCTG 58.826 43.478 0.00 0.00 0.00 2.90
495 496 4.451629 ACCGTCTATTCGTTGTTCATCT 57.548 40.909 0.00 0.00 0.00 2.90
496 497 5.526010 AAACCGTCTATTCGTTGTTCATC 57.474 39.130 0.00 0.00 0.00 2.92
497 498 5.934935 AAAACCGTCTATTCGTTGTTCAT 57.065 34.783 0.00 0.00 0.00 2.57
498 499 5.406175 CCTAAAACCGTCTATTCGTTGTTCA 59.594 40.000 0.00 0.00 0.00 3.18
499 500 5.163923 CCCTAAAACCGTCTATTCGTTGTTC 60.164 44.000 0.00 0.00 0.00 3.18
500 501 4.692155 CCCTAAAACCGTCTATTCGTTGTT 59.308 41.667 0.00 0.00 0.00 2.83
501 502 4.248058 CCCTAAAACCGTCTATTCGTTGT 58.752 43.478 0.00 0.00 0.00 3.32
502 503 4.248058 ACCCTAAAACCGTCTATTCGTTG 58.752 43.478 0.00 0.00 0.00 4.10
503 504 4.541973 ACCCTAAAACCGTCTATTCGTT 57.458 40.909 0.00 0.00 0.00 3.85
504 505 4.541973 AACCCTAAAACCGTCTATTCGT 57.458 40.909 0.00 0.00 0.00 3.85
505 506 4.436451 GCAAACCCTAAAACCGTCTATTCG 60.436 45.833 0.00 0.00 0.00 3.34
506 507 4.436451 CGCAAACCCTAAAACCGTCTATTC 60.436 45.833 0.00 0.00 0.00 1.75
507 508 3.437741 CGCAAACCCTAAAACCGTCTATT 59.562 43.478 0.00 0.00 0.00 1.73
508 509 3.004862 CGCAAACCCTAAAACCGTCTAT 58.995 45.455 0.00 0.00 0.00 1.98
509 510 2.224257 ACGCAAACCCTAAAACCGTCTA 60.224 45.455 0.00 0.00 0.00 2.59
510 511 1.232119 CGCAAACCCTAAAACCGTCT 58.768 50.000 0.00 0.00 0.00 4.18
511 512 0.946528 ACGCAAACCCTAAAACCGTC 59.053 50.000 0.00 0.00 0.00 4.79
512 513 1.334556 GAACGCAAACCCTAAAACCGT 59.665 47.619 0.00 0.00 0.00 4.83
513 514 1.335233 GGAACGCAAACCCTAAAACCG 60.335 52.381 0.00 0.00 0.00 4.44
514 515 1.958579 AGGAACGCAAACCCTAAAACC 59.041 47.619 0.00 0.00 0.00 3.27
515 516 2.287970 CCAGGAACGCAAACCCTAAAAC 60.288 50.000 0.00 0.00 0.00 2.43
516 517 1.957877 CCAGGAACGCAAACCCTAAAA 59.042 47.619 0.00 0.00 0.00 1.52
517 518 1.611519 CCAGGAACGCAAACCCTAAA 58.388 50.000 0.00 0.00 0.00 1.85
518 519 0.891904 GCCAGGAACGCAAACCCTAA 60.892 55.000 0.00 0.00 0.00 2.69
519 520 1.302993 GCCAGGAACGCAAACCCTA 60.303 57.895 0.00 0.00 0.00 3.53
520 521 2.597510 GCCAGGAACGCAAACCCT 60.598 61.111 0.00 0.00 0.00 4.34
521 522 3.680786 GGCCAGGAACGCAAACCC 61.681 66.667 0.00 0.00 0.00 4.11
522 523 4.038080 CGGCCAGGAACGCAAACC 62.038 66.667 2.24 0.00 0.00 3.27
523 524 2.332654 ATCGGCCAGGAACGCAAAC 61.333 57.895 2.24 0.00 0.00 2.93
524 525 2.033448 ATCGGCCAGGAACGCAAA 59.967 55.556 2.24 0.00 0.00 3.68
525 526 2.745884 CATCGGCCAGGAACGCAA 60.746 61.111 2.24 0.00 0.00 4.85
526 527 3.545124 AACATCGGCCAGGAACGCA 62.545 57.895 2.24 0.00 0.00 5.24
527 528 2.253414 GAAACATCGGCCAGGAACGC 62.253 60.000 2.24 0.00 0.00 4.84
528 529 1.794222 GAAACATCGGCCAGGAACG 59.206 57.895 2.24 0.00 0.00 3.95
529 530 0.672401 TCGAAACATCGGCCAGGAAC 60.672 55.000 2.24 0.00 0.00 3.62
530 531 0.672401 GTCGAAACATCGGCCAGGAA 60.672 55.000 2.24 0.00 0.00 3.36
531 532 1.079405 GTCGAAACATCGGCCAGGA 60.079 57.895 2.24 0.00 0.00 3.86
532 533 3.486263 GTCGAAACATCGGCCAGG 58.514 61.111 2.24 0.00 0.00 4.45
536 537 0.808755 ATTTGGGTCGAAACATCGGC 59.191 50.000 0.00 0.00 36.95 5.54
537 538 4.083217 TGTTTATTTGGGTCGAAACATCGG 60.083 41.667 0.00 0.00 36.99 4.18
538 539 4.849383 GTGTTTATTTGGGTCGAAACATCG 59.151 41.667 2.71 0.00 42.11 3.84
539 540 4.849383 CGTGTTTATTTGGGTCGAAACATC 59.151 41.667 2.71 0.00 42.11 3.06
540 541 4.789784 CGTGTTTATTTGGGTCGAAACAT 58.210 39.130 2.71 0.00 42.11 2.71
541 542 3.548415 GCGTGTTTATTTGGGTCGAAACA 60.548 43.478 0.00 0.00 38.97 2.83
542 543 2.975193 GCGTGTTTATTTGGGTCGAAAC 59.025 45.455 0.00 0.00 33.37 2.78
543 544 2.617308 TGCGTGTTTATTTGGGTCGAAA 59.383 40.909 0.00 0.00 0.00 3.46
544 545 2.031857 GTGCGTGTTTATTTGGGTCGAA 60.032 45.455 0.00 0.00 0.00 3.71
545 546 1.532007 GTGCGTGTTTATTTGGGTCGA 59.468 47.619 0.00 0.00 0.00 4.20
546 547 1.723384 CGTGCGTGTTTATTTGGGTCG 60.723 52.381 0.00 0.00 0.00 4.79
547 548 1.400500 CCGTGCGTGTTTATTTGGGTC 60.400 52.381 0.00 0.00 0.00 4.46
548 549 0.594110 CCGTGCGTGTTTATTTGGGT 59.406 50.000 0.00 0.00 0.00 4.51
549 550 0.875728 TCCGTGCGTGTTTATTTGGG 59.124 50.000 0.00 0.00 0.00 4.12
550 551 2.160615 TGATCCGTGCGTGTTTATTTGG 59.839 45.455 0.00 0.00 0.00 3.28
551 552 3.463533 TGATCCGTGCGTGTTTATTTG 57.536 42.857 0.00 0.00 0.00 2.32
552 553 4.491234 TTTGATCCGTGCGTGTTTATTT 57.509 36.364 0.00 0.00 0.00 1.40
553 554 4.155099 TCATTTGATCCGTGCGTGTTTATT 59.845 37.500 0.00 0.00 0.00 1.40
554 555 3.687212 TCATTTGATCCGTGCGTGTTTAT 59.313 39.130 0.00 0.00 0.00 1.40
555 556 3.067833 TCATTTGATCCGTGCGTGTTTA 58.932 40.909 0.00 0.00 0.00 2.01
556 557 1.876799 TCATTTGATCCGTGCGTGTTT 59.123 42.857 0.00 0.00 0.00 2.83
557 558 1.518325 TCATTTGATCCGTGCGTGTT 58.482 45.000 0.00 0.00 0.00 3.32
558 559 1.518325 TTCATTTGATCCGTGCGTGT 58.482 45.000 0.00 0.00 0.00 4.49
559 560 2.708514 GATTCATTTGATCCGTGCGTG 58.291 47.619 0.00 0.00 0.00 5.34
560 561 1.327460 CGATTCATTTGATCCGTGCGT 59.673 47.619 0.00 0.00 0.00 5.24
561 562 1.333169 CCGATTCATTTGATCCGTGCG 60.333 52.381 0.00 0.00 0.00 5.34
562 563 1.597937 GCCGATTCATTTGATCCGTGC 60.598 52.381 0.00 0.00 0.00 5.34
563 564 1.333169 CGCCGATTCATTTGATCCGTG 60.333 52.381 0.00 0.00 0.00 4.94
564 565 0.937304 CGCCGATTCATTTGATCCGT 59.063 50.000 0.00 0.00 0.00 4.69
565 566 0.384725 GCGCCGATTCATTTGATCCG 60.385 55.000 0.00 0.00 0.00 4.18
566 567 0.384725 CGCGCCGATTCATTTGATCC 60.385 55.000 0.00 0.00 0.00 3.36
567 568 0.304705 ACGCGCCGATTCATTTGATC 59.695 50.000 5.73 0.00 0.00 2.92
568 569 0.732571 AACGCGCCGATTCATTTGAT 59.267 45.000 5.73 0.00 0.00 2.57
569 570 1.360820 TAACGCGCCGATTCATTTGA 58.639 45.000 5.73 0.00 0.00 2.69
570 571 2.166741 TTAACGCGCCGATTCATTTG 57.833 45.000 5.73 0.00 0.00 2.32
571 572 2.160813 ACTTTAACGCGCCGATTCATTT 59.839 40.909 5.73 0.00 0.00 2.32
572 573 1.735571 ACTTTAACGCGCCGATTCATT 59.264 42.857 5.73 0.00 0.00 2.57
573 574 1.365699 ACTTTAACGCGCCGATTCAT 58.634 45.000 5.73 0.00 0.00 2.57
574 575 1.136197 CAACTTTAACGCGCCGATTCA 60.136 47.619 5.73 0.00 0.00 2.57
575 576 1.520368 CAACTTTAACGCGCCGATTC 58.480 50.000 5.73 0.00 0.00 2.52
576 577 0.453782 GCAACTTTAACGCGCCGATT 60.454 50.000 5.73 0.00 0.00 3.34
577 578 1.133869 GCAACTTTAACGCGCCGAT 59.866 52.632 5.73 0.00 0.00 4.18
578 579 1.893168 GAGCAACTTTAACGCGCCGA 61.893 55.000 5.73 0.00 0.00 5.54
579 580 1.509162 GAGCAACTTTAACGCGCCG 60.509 57.895 5.73 0.00 0.00 6.46
580 581 0.179222 GAGAGCAACTTTAACGCGCC 60.179 55.000 5.73 0.00 0.00 6.53
581 582 0.511221 TGAGAGCAACTTTAACGCGC 59.489 50.000 5.73 0.00 0.00 6.86
582 583 2.058798 TCTGAGAGCAACTTTAACGCG 58.941 47.619 3.53 3.53 0.00 6.01
583 584 4.212150 GTTTCTGAGAGCAACTTTAACGC 58.788 43.478 0.00 0.00 0.00 4.84
584 585 5.198274 GTGTTTCTGAGAGCAACTTTAACG 58.802 41.667 0.00 0.00 0.00 3.18
585 586 5.006358 TCGTGTTTCTGAGAGCAACTTTAAC 59.994 40.000 0.00 0.00 0.00 2.01
586 587 5.006358 GTCGTGTTTCTGAGAGCAACTTTAA 59.994 40.000 0.00 0.00 0.00 1.52
587 588 4.506654 GTCGTGTTTCTGAGAGCAACTTTA 59.493 41.667 0.00 0.00 0.00 1.85
588 589 3.309954 GTCGTGTTTCTGAGAGCAACTTT 59.690 43.478 0.00 0.00 0.00 2.66
589 590 2.866762 GTCGTGTTTCTGAGAGCAACTT 59.133 45.455 0.00 0.00 0.00 2.66
590 591 2.474816 GTCGTGTTTCTGAGAGCAACT 58.525 47.619 0.00 0.00 0.00 3.16
591 592 1.190323 CGTCGTGTTTCTGAGAGCAAC 59.810 52.381 0.00 0.00 0.00 4.17
592 593 1.066454 TCGTCGTGTTTCTGAGAGCAA 59.934 47.619 0.00 0.00 0.00 3.91
593 594 0.666374 TCGTCGTGTTTCTGAGAGCA 59.334 50.000 0.00 0.00 0.00 4.26
594 595 1.332178 CTCGTCGTGTTTCTGAGAGC 58.668 55.000 0.00 0.00 0.00 4.09
595 596 1.068885 AGCTCGTCGTGTTTCTGAGAG 60.069 52.381 0.00 0.00 0.00 3.20
596 597 0.952280 AGCTCGTCGTGTTTCTGAGA 59.048 50.000 0.00 0.00 0.00 3.27
597 598 1.056103 CAGCTCGTCGTGTTTCTGAG 58.944 55.000 0.00 0.00 0.00 3.35
598 599 0.318699 CCAGCTCGTCGTGTTTCTGA 60.319 55.000 0.00 0.00 0.00 3.27
599 600 0.597637 ACCAGCTCGTCGTGTTTCTG 60.598 55.000 0.00 0.00 0.00 3.02
600 601 0.956633 TACCAGCTCGTCGTGTTTCT 59.043 50.000 0.00 0.00 0.00 2.52
601 602 1.068748 TCTACCAGCTCGTCGTGTTTC 60.069 52.381 0.00 0.00 0.00 2.78
602 603 0.956633 TCTACCAGCTCGTCGTGTTT 59.043 50.000 0.00 0.00 0.00 2.83
617 618 1.202382 GGTCGTATGCACCCTGTCTAC 60.202 57.143 0.00 0.00 0.00 2.59
625 626 2.514013 CGCTTCGGTCGTATGCACC 61.514 63.158 0.00 0.00 0.00 5.01
631 632 2.203972 CTTGGGACGCTTCGGTCGTA 62.204 60.000 0.00 0.00 40.59 3.43
690 691 3.058293 GCGAAGTGTGTGAAATGATCCAA 60.058 43.478 0.00 0.00 0.00 3.53
888 901 2.051882 GTTGTCTGTGCGCTGTGC 60.052 61.111 9.73 6.19 46.70 4.57
927 940 2.031516 CAGGCAGGTGCGAGACAAG 61.032 63.158 0.00 0.00 43.26 3.16
960 973 0.305313 GTCGACTTAGCTCGATCGCT 59.695 55.000 11.09 5.19 44.21 4.93
989 1002 3.025978 CTCCTTATCATGCAAAAGCCCA 58.974 45.455 0.00 0.00 0.00 5.36
1659 1675 0.401105 AGGGCTGGATCAGTATGGCT 60.401 55.000 0.00 0.00 36.16 4.75
1663 1679 2.366916 CGAAGAAGGGCTGGATCAGTAT 59.633 50.000 0.00 0.00 33.43 2.12
1749 1765 1.025647 AGTAGCTGTCCGAGGTCGAC 61.026 60.000 7.13 7.13 43.02 4.20
1752 1768 1.810532 CCAGTAGCTGTCCGAGGTC 59.189 63.158 0.00 0.00 33.31 3.85
2138 2170 4.888239 GCATCTACTCTGGAACTGGTAGTA 59.112 45.833 0.00 0.00 34.92 1.82
2175 2215 2.479219 GGCGAGTACCACAAGCTACTAC 60.479 54.545 0.00 0.00 0.00 2.73
2212 2255 2.163613 CGGTATTGGACCCTTTTCTTGC 59.836 50.000 0.00 0.00 46.81 4.01
2230 2276 2.929592 GCTACAACGATCCAAGTTCGGT 60.930 50.000 0.00 0.00 40.83 4.69
2250 2306 0.670546 TGCTTTCCGACAGCACTAGC 60.671 55.000 5.08 0.00 42.49 3.42
2251 2307 3.514777 TGCTTTCCGACAGCACTAG 57.485 52.632 5.08 0.00 42.49 2.57
2255 2311 1.065401 CACTTTTGCTTTCCGACAGCA 59.935 47.619 5.08 5.08 45.73 4.41
2256 2312 1.065551 ACACTTTTGCTTTCCGACAGC 59.934 47.619 0.00 0.00 37.82 4.40
2257 2313 3.607078 GCTACACTTTTGCTTTCCGACAG 60.607 47.826 0.00 0.00 0.00 3.51
2305 2361 5.413523 ACGATATACATACGTACATGGAGCA 59.586 40.000 0.00 0.00 38.47 4.26
2306 2362 5.737757 CACGATATACATACGTACATGGAGC 59.262 44.000 0.00 0.00 38.47 4.70
2333 2391 5.010922 TCCTTTGCAAGCAAGTACAATGAAT 59.989 36.000 7.60 0.00 37.24 2.57
2419 2495 2.098607 CCTGATCATGCAACACCATCAC 59.901 50.000 0.00 0.00 0.00 3.06
2555 2636 3.615592 GCTCCATCATCAAGCAAGCAAAA 60.616 43.478 0.00 0.00 36.06 2.44
2767 2868 3.823330 GTCCAGCGATCGACCGGT 61.823 66.667 21.57 6.92 41.25 5.28
2805 2906 3.288308 CTCGAGGCAAGCAGACCGT 62.288 63.158 3.91 0.00 0.00 4.83
2806 2907 2.507992 CTCGAGGCAAGCAGACCG 60.508 66.667 3.91 0.00 0.00 4.79
2807 2908 1.739562 CACTCGAGGCAAGCAGACC 60.740 63.158 18.41 0.00 0.00 3.85
2808 2909 2.386660 GCACTCGAGGCAAGCAGAC 61.387 63.158 18.41 0.00 0.00 3.51
2809 2910 2.047844 GCACTCGAGGCAAGCAGA 60.048 61.111 18.41 0.00 0.00 4.26
2810 2911 0.390340 TAAGCACTCGAGGCAAGCAG 60.390 55.000 22.44 4.47 0.00 4.24
2811 2912 0.250234 ATAAGCACTCGAGGCAAGCA 59.750 50.000 22.44 8.94 0.00 3.91
2812 2913 0.654683 CATAAGCACTCGAGGCAAGC 59.345 55.000 22.44 17.30 0.00 4.01
2813 2914 0.654683 GCATAAGCACTCGAGGCAAG 59.345 55.000 22.44 9.61 41.58 4.01
2814 2915 2.767536 GCATAAGCACTCGAGGCAA 58.232 52.632 22.44 13.32 41.58 4.52
2815 2916 4.521075 GCATAAGCACTCGAGGCA 57.479 55.556 22.44 8.09 41.58 4.75
2826 2927 6.038356 CCTTCCAATTTACAAGCTGCATAAG 58.962 40.000 1.02 0.00 0.00 1.73
2829 2930 3.368739 GCCTTCCAATTTACAAGCTGCAT 60.369 43.478 1.02 0.00 0.00 3.96
2833 2934 2.228822 CGTGCCTTCCAATTTACAAGCT 59.771 45.455 0.00 0.00 0.00 3.74
2843 2944 3.429372 AACCCTGCGTGCCTTCCAA 62.429 57.895 0.00 0.00 0.00 3.53
2858 2959 2.051882 ACGACGACGACGACAACC 60.052 61.111 25.15 0.00 42.66 3.77
2880 2981 1.196130 ACAACAACGACGACGACGAC 61.196 55.000 25.15 7.02 42.66 4.34
2881 2982 0.523125 AACAACAACGACGACGACGA 60.523 50.000 25.15 0.00 42.66 4.20
2882 2983 0.379760 CAACAACAACGACGACGACG 60.380 55.000 17.60 17.60 42.66 5.12
2883 2984 0.641783 ACAACAACAACGACGACGAC 59.358 50.000 15.32 0.00 42.66 4.34
2884 2985 1.845568 GTACAACAACAACGACGACGA 59.154 47.619 15.32 0.00 42.66 4.20
2885 2986 1.582953 TGTACAACAACAACGACGACG 59.417 47.619 5.58 5.58 45.75 5.12
2886 2987 3.847037 ATGTACAACAACAACGACGAC 57.153 42.857 0.00 0.00 32.02 4.34
2887 2988 4.609947 ACTATGTACAACAACAACGACGA 58.390 39.130 0.00 0.00 32.02 4.20
2888 2989 4.959631 ACTATGTACAACAACAACGACG 57.040 40.909 0.00 0.00 32.02 5.12
2889 2990 7.571089 TGATACTATGTACAACAACAACGAC 57.429 36.000 0.00 0.00 32.02 4.34
2890 2991 8.652463 CAATGATACTATGTACAACAACAACGA 58.348 33.333 0.00 0.00 32.02 3.85
2891 2992 7.425309 GCAATGATACTATGTACAACAACAACG 59.575 37.037 0.00 0.00 32.02 4.10
2905 3006 4.581824 CAGGCAACCAAGCAATGATACTAT 59.418 41.667 0.00 0.00 35.83 2.12
2907 3008 2.756760 CAGGCAACCAAGCAATGATACT 59.243 45.455 0.00 0.00 35.83 2.12
2953 3054 1.930503 CACGCAATTACGTAGATGCCA 59.069 47.619 21.65 0.00 46.34 4.92
2958 3059 1.392168 GCTTGCACGCAATTACGTAGA 59.608 47.619 10.77 0.00 46.34 2.59
2959 3060 1.127766 TGCTTGCACGCAATTACGTAG 59.872 47.619 16.40 0.00 46.34 3.51
2960 3061 1.127766 CTGCTTGCACGCAATTACGTA 59.872 47.619 19.22 0.00 46.34 3.57
2962 3063 0.794229 CCTGCTTGCACGCAATTACG 60.794 55.000 19.22 6.85 39.80 3.18
2963 3064 1.072666 GCCTGCTTGCACGCAATTAC 61.073 55.000 19.22 5.13 39.80 1.89
2964 3065 1.212490 GCCTGCTTGCACGCAATTA 59.788 52.632 19.22 0.00 39.80 1.40
2965 3066 2.048877 GCCTGCTTGCACGCAATT 60.049 55.556 19.22 0.00 39.80 2.32
2966 3067 4.060038 GGCCTGCTTGCACGCAAT 62.060 61.111 19.22 0.00 39.80 3.56
3012 3113 3.341043 CAATGCGGCCGATCGAGG 61.341 66.667 33.48 8.58 0.00 4.63
3018 3119 3.969250 GACTTCCCAATGCGGCCGA 62.969 63.158 33.48 15.19 0.00 5.54
3023 3124 2.409870 GGCTGGACTTCCCAATGCG 61.410 63.158 0.00 0.00 46.07 4.73
3037 3138 3.129813 ACTTATCATGTGCATTGTGGCTG 59.870 43.478 0.00 0.00 34.04 4.85
3057 3158 2.665185 GGCGACCAAGCAACGACT 60.665 61.111 0.00 0.00 39.27 4.18
3058 3159 2.665185 AGGCGACCAAGCAACGAC 60.665 61.111 0.00 0.00 39.27 4.34
3059 3160 2.664851 CAGGCGACCAAGCAACGA 60.665 61.111 0.00 0.00 39.27 3.85
3060 3161 2.972505 ACAGGCGACCAAGCAACG 60.973 61.111 0.00 0.00 39.27 4.10
3061 3162 1.891919 TCACAGGCGACCAAGCAAC 60.892 57.895 0.00 0.00 39.27 4.17
3062 3163 2.508436 TCACAGGCGACCAAGCAA 59.492 55.556 0.00 0.00 39.27 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.