>input_sequence_61340
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----------------------------------------------------ATGATAAGGAGGAGGATGGGGGCACTGC
ACGTCGGCGAGCCGCGGGTCAGCTTCCAGCAGCAGGTCGGCAAGAACGGCGGGGGCCACGGCGCCGTCGTGGAGGAGATA
CACGGGCTCATCCGCGTGTACAAGGACGGGCACGTGGAGCGCCTCCCGGCGATCCCCGACGTCCCCTGCACGTGGGGCTC
GACGGCCGCCGCGAGCGGCGTCCTCGCGCGCGACGTGGCGGTCGACCGCGCCACGGGGGTGTGGGCGCGCCTGTACGCGC
CGGCCGCCGCGGCGGGGAAGGTCCCCGTGGTGGTGTACTTCCACGGCGGCGGGTTCAGCGTCGGCTCCGCCGCGTGGAGC
TGCTACCACGAGTTCCTCGCCCAGCTCCCCGCGCGGGCGGGCTGCGCCGTGATGTCCGTCGACTACCGCCTGGCGCCGGA
GAACCGCCTGCCCGCCGCGTTCGACGACGGGCTCACGGCGCTGCGGTGGCTGCGGCAGCAAGCGAGCAGA---AACGCGG
CCGCCTCCGACGAGGTCTCGTGGTGGCGCAGCCGGTGCAGGTTCGACCGCGTGTTCCTCATGGGCGACAGCGCGGGCGCC
GCCATCGCGTTCCACGTCGCGGCGCGGGCCGGGCAGGGCCAGCTGGGCGCGCTGGCGCCGCTCTCGGTCAAGGGAGCCAT
ACTGATCCAGCCCTTCTTCGGCGGGGAGGCCCGCACGGCGTCGGAGAAGAGCATGCCGCAGCCGCCGGGGTCGGCGCTGA
GCCTGTCGACCTCGGACAGCTACTGGCGCATGGCGCTCCCGGCCGGCGCCGGGCGCGACCACCCCTGGTGCAACCCGCTG
GCCCGCGGCGCCCCCCGGCTGGAGACGCTGGCGCTGCCGCCCGTGCTGGTGTGCATCTCGGAGGCGGACATCCTGCGCGA
CCGGAACCTGGAGCTGTGCAGGGCGCTGCGGAAGGCCGGCAAGAGCGTGGAGCAGGCGACGTACGGCGGCGTGGGGCACG
CCTTCCAGGTGCTCCACAACTGCCACCTGTCCCAGCCGCGCACGCAGGAGATGCTCGCGCACATCCGGGCCTTCGTCAGC
GCCAGGTCCAGCTGA-----------------------------------------------------------------
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>chr4D_1_TraesCS4D01G219100
GATGCGGTGGGAGTCGAGGTGCCAGCCGTGGAGGAGGTTCTTATTGTGCCATGGTAGCAGGACGCGGTACTGTTGGTGGT
ACCTCGCGCGGTGCTTCGGGATATACAGTCGATCTCGTGGCCGGCGTGCCCTCCCCTCTGCTCGCACCAGCGTGCGCCTA
GCTCGGCGGCCCACGCCACGAGTTGGCATCGGTGTCTTGCTTCCCCTTCCCCTTCCCAAACAAGCCAACAATGGCTATGG
CTAGGGTCTCTGTCGCCGGCGGTGGAGCGGCGTGCCTAGATGTGGACGGGAGTGGGAAGTGGATGAGCCCCCTCCCCCCT
CTCCCCTCCCCCCACGCTTGCATTTAAAAAGACGTGGACTCCGGACACTTCCAGTGGCTGCCATGCGGCCCCGAGGTGGG
TGAGTTGCATTGAATATGACCGCGGCGATGGTTGGGCAGCCTACACACGGGCCCGGGCCCGAATCCAGCGGCTGCCATGA
GTCGGGAATGCGTGCAGATGAACAACGAATAGACGGTTTTAGGGTTTGCGTTCCTGGCCGATGTTTCGACCCAAATAAAC
ACGCACGGATCAAATGAATCGGCGCGTTAAAGTTGCTCTCAGAAACACGACGAGCTGGTAGACAGGGTGCATACGACCGA
AGCGTCCCAAGTGTTCCTACACGGTGGACTTTTGCGGGGGTCGCTCACGAT-----TGGATCATTTCACACACTTCGCCG
TGTGCGCGAATCACCCACCC-----CCA-CCCCACTTGGCGAGTCCACTCGATCGCTCGGCAGCCAAAGGCAGCCCGACA
CCTGTGCCACCG-CCCCCTCCCGGCTATAAAACCCGCCCACCGCCCGAGCTCCCCGGACAACGCCGCATAATTGTGTCCG
CCGCCGGCTCCCGGGACACCGCACAGCGCACAGACAACCCAAGGCCTAGCACCACTCTCCTTGTCTCGCACCTGCCTGCC
GGCTGCGCCGCTAGCGATCGAGCTAAGTCGACGCGCGCGCGTGGGCTTTTGCATGATAAGGAGGAGGATGGGGGCACTGC
ACGTCGGCGAGCCGCGGGTCAGCTTCCAGCAGCAGGTCGGCAAGAACGGCGGGGGCCACGGCGCCGTCGTGGAGGAGATA
CACGGGCTCATCCGCGTGTACAAGGACGGGCACGTGGAGCGCCTCCCGGCGATCCCCGACGTCCCCTGCACGTGGGGCTC
GACGGCCGCCGCGAGCGGCGTCCTCGCGCGCGACGTGGCGGTCGACCGCGCCACGGGGGTGTGGGCGCGCCTGTACGCGC
CGGCCGCCGCGGCGGGGAAGGTCCCCGTGGTGGTGTACTTCCACGGCGGCGGGTTCAGCGTCGGCTCCGCCGCGTGGAGC
TGCTACCACGAGTTCCTCGCCCAGCTCCCCGCGCGGGCGGGCTGCGCCGTGATGTCCGTCGACTACCGCCTGGCGCCGGA
GAACCGCCTGCCCGCCGCGTTCGACGACGGGCTCACGGCGCTGCGGTGGCTGCGGCAGCAAGCGAGCAGA---AACGCGG
CCGCCTCCGACGAGGTCTCGTGGTGGCGCAGCCGGTGCAGGTTCGACCGCGTGTTCCTCATGGGCGACAGCGCGGGCGCC
GCCATCGCGTTCCACGTCGCGGCGCGGGCCGGGCAGGGCCAGCTGGGCGCGCTGGCGCCGCTCTCGGTCAAGGGAGCCAT
ACTGATCCAGCCCTTCTTCGGCGGGGAGGCCCGCACGGCGTCGGAGAAGAGCATGCCGCAGCCGCCGGGGTCGGCGCTGA
GCCTGTCGACCTCGGACAGCTACTGGCGCATGGCGCTCCCGGCCGGCGCCGGGCGCGACCACCCCTGGTGCAACCCGCTG
GCCCGCGGCGCCCCCCGGCTGGAGACGCTGGCGCTGCCGCCCGTGCTGGTGTGCATCTCGGAGGCGGACATCCTGCGCGA
CCGGAACCTGGAGCTGTGCAGGGCGCTGCGGAAGGCCGGCAAGAGCGTGGAGCAGGCGACGTACGGCGGCGTGGGGCACG
CCTTCCAGGTGCTCCACAACTGCCACCTGTCCCAGCCGCGCACGCAGGAGATGCTCGCGCACATCCGGGCCTTCGTCAGC
GCCAGGTCCAGCTGACAGACACA---CACTCCTCCGCCGTG-CATGTCAGTGTCACCCGTCGATTAATTACT--------
----TAATCTACTACCAGTTCCAG--------AGTAGATGCCGTGTAAGCAGTAGT---AGTAGCTTGTGGTACTCGCCC
AAGTGAAGGAAAAGGC---AAGAAAAGGGTCCAATACCGAACTTGGATC----------GTTGTAGCTAGTGCTGTCGGA
AAGCAAAAGTGTAGCGGAAAAATAATACTCCTACCACTACTGCTCCATGT--ACGTATGTATATCGTGTTATTCATTGTA
CT------TGCTTGCAAAGGAGGATCAATATATATATATATA----TATTATTACTACTGC--------TTGTGTTGTTT
AAGTAACAACTCGGGTGATGGTGTT-GCATGATCAGGGGAGCCAGAAAAGGCTCCGGGAACAAAAAATCATTGTCTGCTT
GTCTGGTGCTTTGCACTTTGCACCATCCCTTC----TTTTCTATGTTTCCCGTCGCTGCTTTGGGAAGGTTCAGGTT---
-TTGCTTGCTTGATGATGGAGCCCGGGACTTGTCTAAGC---GCAATCATCAGTCGGC---TAGATCTTAGGCTA-----
-GCACCTGGTAAGAACAGAATAGAATCTTGGGTACGTTTCCCGATGGGAGGCC----ATCACATGACCCCCAACCGTGGC
GCAACAACGCAAGTGCGGGTGCGTCCACGGGCGCTAGTGCCGCTGCTGCAATGCATCAGACAGGCCGACCGGTCGATCGC
TGGACGGACGCATCATTCTTCCTGCACGGTCTGCTTGCCTCGAGTGCTTATGCAGCTTGTAAATTGGAAGGCACGCAGGG
TTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTTGTTGTACATAGTATCATTGCTTGGTTGCCTGTCTCGCCAACC
GCATCATGGCGGCTGGCATCTACGTAATTGCGTGCAAGCAGGCCAACATCATGCGTGATCATCTGAAAAGAGCCTCGATC
GGCCGCATTGGGAAGTCCAGCCACAATGCACATGATAAGTCGTTGCTTGGTCGCCTGTGA
>chr4A_595
GCTCTTTAGG----------------------------------------------------------------------
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-------------------------------------------AACACGACGAGCCGATAGACAGCGTGCAAACGACCGA
AGCGTCCCAAGTGTTCCTACACGGTGGACTTTTGCGGGGGTCGCTCACGAGACGAATGGATCATTTCACACACTTCGCCG
TGTGCGCGAATCACCCACCC-----CCACCCCCACTTTGCGAGTCCACTCGATCGCTCGGCAGCCAAAGCCAGCCCGACA
CCTGTCCCACCGTCCCCCTCCCGGCTATAAAACCCGGCCACCGCCCGAGCTCCCCGGACAACGCCGCATAATTGTGTCCG
CCGCCGGCTCCCGGGACACCCCACAGCGCACAGACAACCCAAGGCCTAGCACCACTCTCGTTGTCTAGCGCCTGCCGGCC
GGCCGCGCCGCTCGC-ATCGATCCAAGCCGACGCGCGCGCGAGGGCTTCTGCATGATAAGGAGGAGGATGGGGGCACTGC
ACGTCGGCGAGCCGCGGGTCAGCTTCCAGCAGCAGGTCGGCAAGAACGGCGGGGGCCACGGCGCCGTCGTGGAGGAGATA
CACGGGCTCATCCGCGTGTACAAGGACGGGCACGTGGAGCGCCTCCCGGCGATCCCCGACGTGCCCTGCACGTGGGGCTC
GACGGCCGCCGGGAGCGGCGTCCTCGCGCGCGACGTGGCGGTCGACCGCGCCACGGGGGTGTGGGCGCGCCTGTACGCGC
CGGCCGCCGCGGCGGGGAAGGTCCCCGTGGTGGTCTACTTCCACGGCGGCGGGTTCAGCGTCGGCTCCGCGGCGTGGAGC
TGCTACCACGAGTTCGTCGCCCAGCTCCCCGCGCGGGCGGGCTGCGCCGTGATGTCCGTCGACTACCGCCTGGCGCCGGA
GAACCGGCTGCCCGCGGCCTTCGACGACGGGCTCACGGCGCTGCGGTGGCTGCGGCAGCAGGCGGGCAGAAACAACGCCG
CCGCCTCCGACGAGGTCTCCTGGTGGCGCGGCCGGTGCAGGTTCGACCGCGTGTTCCTGATGGGCGACAGCGCGGGCGCC
GCCATCGCGTTCCACGTCGCGGCGCGGGCCGGGCAGGGCCAGCTGGGCGCGCTGGCGCCGCTCTCGGTGAAGGGGGCCGT
ACTGATCCAGCCCTTCTTCGGCGGGGAGGCCCGCACGGCGTCGGAGAAGAGCATGCCGCAGCCAGCGGGGTCGGCGCTGA
GCCTCTCCACCTCGGACAGCTACTGGCGCATGGCGCTCCCGGCGGGCGCCGGGCGCGACCACCCCTGGTGCAACCCGCTG
GCCCGCGGCGCGCCCCGGCTGGAGGCCCTGGCGCTGCCGGCCGTGCTGGTGTGCATCTCGGAGGCGGACATCCTGCGCGA
CCGGAACCTGGAGCTGTGCAGGGCGCTGCGCAAGGCCGGCAAGAGCGTGGAGCAGGCGACGTACGGCGGCGTGGGGCACG
CCTTCCAGGTGCTCCACAACTGCCACCTGTCCCAGCCGCGCACGCAGGAGATGCTCGCCCACATCCGGGCCTTCGTCAGC
GCCAGGTCCAGCTGACAGGCAGACACCACTCCTCCGCCGTGCCATGTCAGTGTCACCCGCCGATTAATTACT--------
----TAATCCACTACCAGTTCCAG--------AGTAGATGCCGTGTAAGCAGTATTAGCAGTAGCTTGTGGTACTCGCCC
AAGTGAAGGAAAAGACAAGAAGAAAAGGGTCCAATGCCGAACTTGGATC----------GTGG----------TGTCGGA
AAGCAAAAGTGTGGCGCAAAAATAACACTTT-----------CTCCATGT--ATGTATGTGTATCGTGTTGTTCATTGTA
CTCCTACTTACTTGCAAAGGCGGATCAATATATATATATATATTATTATTATTACTACTGC--------TTGTCTTGTTT
AAGTAACAACTCGGCTGACGGTGTT-GCATGATGAGGGAAGCAAGAAAAGGCTCCGGGAACAAAAAATCATTGTCTGCTT
GTCTGGCGCTTTGCGCTTTGCACTAGCCCCTTCTTTTTTTCTATGTTTCCCGTCGCTGCTTTGGGAAGGTTCAGGCTTTG
CTTGCTTGCTTGATGATGGAGCCCGGGACTTGTCTAAGCAGCGCAATCATCAGCCGGC---TAGATTTTAGGCTGGCACA
TGCACCTGGTAAGAACAGAATAGAATCTCGGATACGTTTCCCGATGGGAGGCCGGCCATCACATGAGCCCCAACCGCAGC
GCAACGACACAAGTGCG-GTGCGAC--CGGGCGCTAGTGCCGCTGCTGCAATGATGCAT-CAGACAAGCCTGTCGATCAC
TGTAAGGAAGCCTCGAGTGTATATGTT--------------------TTCTGCGGCTTGTAAACTGGAAGGCACGCAGCG
CTCTT---------------------------GTTGTTGTTGTACGTGGTATCATTGCTTGGTTGCCTGTCTCACCAACC
ACATCATGGCGGCCGGCAAACAATC----GCGTGCAAGCAGGCCAACATCATGCGTGATCATCTGAGAAGAGACTCGAGC
GGCAGCATTGGGAAGTCTAGCCACAATGCACATGATA-----------------------
>chr4B_604
AACACGACT-----------------------------------------------------------------------
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----------------------------------------------------AGCTGATAGACAGCGTACAAAAGACCGA
AGCGTCCCAAGTGTTCCTACACGGTGGACTTTTGCAGGGGTCGCTCACGA-----ATGGATCATTTCACACACTTCGCCG
TGTGCGCGAATCACCGTACCCACCACCA-CCCCACTTGGCGAGTCCACTCGATCGCTCGGCAGCCAAAGCCAGCCCGACA
CCTGTCCCACCG-CCCCCTCCCGGCTATAAAACCCGGCCACCGGCCAAGCTCCCCGGACAACGCTGCATAATTGTGTCCG
CCGCCGGCTCCCGGGACACCACACAGCGCACAGACAACACAAGTCCTAGCAC---TCTCGTTGTCTCGCACCTGCCTGCC
GGCTGCGCCGCTCGCGATCGAGCTAGGCCGACGCGCGCGCGAGGGCTTTTGCATGATAAGGAGGAGGATGGGGGCACTGC
ACGTCGGCGAGCCGCGGGTCAGCTTCCAGCAGCAGGTCGGCAAGAACGGCGGGGGCCACGGCGCCGTCGTGGAGGAGATA
CATGGGCTCATCCGCGTGTACAAGGACGGGCACGTGGAGCGCCTCCCGGCGATCCCCGACGTGCCCTGCACGTGGGGCTC
GACGGCAGCCGCGAGCGGCGTCCTCGCGCGCGACGTGGCGGTCGACCGCGCCACGGGGGTGTGGGCGCGCCTGTACGCGC
CGGCCTCCGCGGCGGGGAAGGTTCCCGTGGTGGTGTACTTCCACGGCGGCGGGTTCAGCGTCGGCTCCGCCGCGTGGAGC
TGCTACCACGAGTTCGTCGCCCAGCTCCCCGCGCGGGCGGGCTGCGCCGTGATGTCCGTCGACTACCGCCTCGCGCCGGA
GAACCGCCTGCCCGCCGCGTTCGACGACGGGCTCACGGCGCTGCGGTGGCTGCGGCAGCAGGCGAGCAGAAACA------
CCGCCTCCGACGAGGTCTCGTGGTGGCGCAGCCGGTGCAGGTTCGACCGCGTGTTCCTCATGGGCGACAGCGCGGGCGCC
GCCATCGCGTTCCACGTCGCGGCGCGGGTCGGGCAGGGCCAGCTGGGCGCTCTGGCCCCGCTCTCGGTCAAGGGGGCCGT
ACTGATCCAGCCCTTCTTCGGCGGGGAGGCCCGCACGGCGTCGGAGAAGAGCATGCCGCAGCCGCCAGGGTCGGCGCTGA
ACCTCTCCACCTCCGACAGCTACTGGCGCATGGCGCTACCGGCCGGGGCCAGCCGCGACCACCCCTGGTGCAACCCCTTG
GCCCGCGGCGCGCCCCGGCTGGAGACGCTGGCGCTGCCGCCCGTGCTGGTGTGCATCTCCGAGGCGGACATCCTGCGCGA
CCGGAACCTGGAGCTGTGCAGGGCGCTGCGCAAGGCCGGCAAGAGCGTGGAGCAGGCGACGTACGGCGGCGTGGGGCACG
CCTTCCAGGTGCTCCACAACTGCCACCTGTCCCAGCCGCGCACGCAGGAGATGCTCGCGCACATCCGGGCCTTCGTCGGC
GCCAGGTCCAGCTGACAGACACA---CACTCGTCCGCCGTGTCATGTCAGTGTCACCCGTCGATTATAATTACTTAATCC
AGTCTAATCCACTACCAGTTCCAGGCTTTCAGAGTAGATACCGTGTAAGCAGT------AGTAACTTGTGGTACTCGCCC
AAGTGAAGGAAAAGAC---AAGAAAAGGGTCCAATGCCGAACTTGGATTGTTGTAGCTAGTGC----------TGTCGGA
AAGCAAAAGTGTAGCGGAAAAATAATACTCCTACCACTACCACTACCACTCCATGTATGTACATCGTGTTGTTCATTGTA
TC----CTTGCTTACAAAGGCGGATCAATATATATAT------------TACTACTACTGCTTGTGTAGTTGTGTTGTTT
AAATACTAACTCGGCTGATGGTGTTTGCATGATCAAGGAAACCCGAAAAGGCCCCGGGAAC---AAATCATTGTCTGCTT
GTCTGGTGCTTTGCACTTTGCACCATCCCTTC----TTTTCTATGTTTCCCGTCGCTGCTTTGGGAAGGTTCAGGC----
-TTGCTTGCTCGATGATGGAGCCCGGGACTTGTCTAAGC---GCAATCATCAGTCGGCTAGTAGATCTTAGGCTA-----
-GCACCTGGTAAGAACAGAATAGAATCTTGGGTACGTTTCCCGATGGGAGGCCG----TCACATGACCCCCAACCGTGGC
GCAACAACGCAAGTGCGGGTGCGTC--CGGGTGCTAGTGCCGCTGCTGCAATGCATCAGACAGGCCGGCCGGTCGATCGC
TGGACGGACGCATCATTCTTCCTGC-------------------------------------------------------
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>SNPs
---S--SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-------S-----S--------
--------------------------------------------------S-----------------------------
---------------------------------------------------------------------S----------
-----S------------------------------S-------------------------------------------
--------------------S--------------------------------------S--------------------
------------S--------------S-------------S--------------------------------------
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---------------S----------------------------------------------------------------
------------------------------------------------------------S-----------------S-
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--------------------------------------------------------------------------S---S-
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----S--S------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
------------------------------S-------------------------------------------------
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---------S--------------------------------------------S-------------------------
--------------S--------------------S-------------------------S-SSSSSSSSSS-------
----------------------------------------SS-----------S----------------S---------
--------------------S-----------------------------------------------------------
--------------S-----------------------S-----------------------------------------
---------------------------------------------------------------------------S----
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-------------------------SS----------------------------------------S------------
-------------------------SSSSSSSSSSSSSSSSSSSSSS--S---S---------S--------------S-
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-S-------------------------S------
S------------S----SSS-SSSSSSS-------------------------------------S-----S-----S-
---S-------------S-------------------SSSSSSSSSSSSSSSSSSSSSSS
>forward_107
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-------GCGGTGCTTCGGGATATACA-----------------------------------------------------
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>reverse_1675
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--------------------------------------------------------------------------AGCCAT
ACTGATCCAGCCCT------------------------------------------------------------------
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>forward_366
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--------------------------AAAAGACGTGGACTCCGGAC----------------------------------
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>reverse_2306
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-----------------------------------------------------------------GCTAGTGCTGTCGGA
AAGCA---------------------------------------------------------------------------
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