Multiple sequence alignment - TraesCS4D01G215700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G215700 chr4D 100.000 2519 0 0 1 2519 369333433 369330915 0.000000e+00 4652
1 TraesCS4D01G215700 chr4D 90.854 164 14 1 2354 2516 23005226 23005389 4.220000e-53 219
2 TraesCS4D01G215700 chr4D 90.625 160 15 0 2357 2516 299352872 299353031 1.960000e-51 213
3 TraesCS4D01G215700 chr4B 96.043 1946 36 11 1 1921 454706603 454704674 0.000000e+00 3129
4 TraesCS4D01G215700 chr4B 95.165 393 17 2 1966 2358 454704372 454703982 9.900000e-174 619
5 TraesCS4D01G215700 chr4A 90.898 1637 83 24 492 2107 95176353 95177944 0.000000e+00 2137
6 TraesCS4D01G215700 chr4A 95.217 460 17 2 1 459 95175799 95176254 0.000000e+00 723
7 TraesCS4D01G215700 chr4A 81.988 322 36 15 2044 2355 95177944 95178253 1.160000e-63 254
8 TraesCS4D01G215700 chr3D 92.025 163 13 0 2354 2516 435452247 435452409 1.950000e-56 230
9 TraesCS4D01G215700 chr3D 89.820 167 16 1 2353 2519 478644114 478643949 1.960000e-51 213
10 TraesCS4D01G215700 chr2A 91.071 168 12 3 2350 2516 751201693 751201858 9.070000e-55 224
11 TraesCS4D01G215700 chr2B 90.476 168 14 2 2351 2516 64890773 64890940 1.170000e-53 220
12 TraesCS4D01G215700 chr6D 91.250 160 14 0 2357 2516 305359627 305359786 4.220000e-53 219
13 TraesCS4D01G215700 chr7D 90.184 163 16 0 2357 2519 213758679 213758517 1.960000e-51 213
14 TraesCS4D01G215700 chr5D 90.625 160 15 0 2357 2516 69515126 69515285 1.960000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G215700 chr4D 369330915 369333433 2518 True 4652 4652 100.000000 1 2519 1 chr4D.!!$R1 2518
1 TraesCS4D01G215700 chr4B 454703982 454706603 2621 True 1874 3129 95.604000 1 2358 2 chr4B.!!$R1 2357
2 TraesCS4D01G215700 chr4A 95175799 95178253 2454 False 1038 2137 89.367667 1 2355 3 chr4A.!!$F1 2354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 670 4.338118 TCACTTGTTGGTGATTTCTTGGAC 59.662 41.667 0.0 0.0 40.72 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2336 0.035317 TGCTTGCTCACAGAACCGAT 59.965 50.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
311 313 7.746475 GCGGCATTTCTAGATTATTTATGTGTC 59.254 37.037 0.00 0.00 0.00 3.67
342 344 5.934402 TTATCTTCCTAAGGGACACTGTC 57.066 43.478 0.00 0.00 42.05 3.51
434 436 6.893554 TCTGTTAGGCATGTAAGACCTAAGTA 59.106 38.462 8.53 2.56 44.58 2.24
585 653 6.801539 TTTTAAGTGGAGCATACTCACTTG 57.198 37.500 15.48 0.00 45.42 3.16
602 670 4.338118 TCACTTGTTGGTGATTTCTTGGAC 59.662 41.667 0.00 0.00 40.72 4.02
687 763 7.095439 GGAGACATGTCTTGTTTAAGAACAGAG 60.095 40.741 28.46 0.00 45.80 3.35
970 1051 6.651086 AGTAGGCTTTCATTTAAGTAGGACC 58.349 40.000 0.00 0.00 0.00 4.46
991 1072 4.572389 ACCGTGACTATCAATCTCATTTGC 59.428 41.667 0.00 0.00 0.00 3.68
1058 1139 6.328672 ACAATCTGGAGACTAAGCATAATCCT 59.671 38.462 0.00 0.00 0.00 3.24
1320 1401 4.677151 GGTCCTGGTGGGGGTCCT 62.677 72.222 0.00 0.00 35.33 3.85
1404 1485 5.332707 CGATCAAACGATCAGAGTAAGTCA 58.667 41.667 0.00 0.00 39.50 3.41
1470 1551 6.924111 TGGATTTGAGATTTCTAAGCCAAAC 58.076 36.000 13.52 0.00 46.47 2.93
1599 1680 3.570975 AGCAGAGCAAAATCATTGTGACA 59.429 39.130 0.00 0.00 0.00 3.58
1659 1747 4.454847 AGCTTGTTTCTGATGTGATCTGTG 59.545 41.667 0.00 0.00 0.00 3.66
1687 1775 2.090760 TCGCTTTGCCATGCTGAATTA 58.909 42.857 0.00 0.00 0.00 1.40
1792 1884 3.931907 ATTCCGTGGAGATTGGAATCA 57.068 42.857 0.01 0.00 46.85 2.57
1880 1972 7.040473 AGGTTATCTGATAGTCCTGTAAACG 57.960 40.000 16.94 0.00 0.00 3.60
1916 2008 2.413453 GAGTAGGCGCTCTTGTGAAAAG 59.587 50.000 7.64 0.00 32.99 2.27
1940 2314 5.390991 GCTGAAAATGAAACCGTTCTAGGAG 60.391 44.000 0.00 0.00 34.60 3.69
1941 2315 5.001232 TGAAAATGAAACCGTTCTAGGAGG 58.999 41.667 0.00 0.00 34.60 4.30
1942 2316 4.903045 AAATGAAACCGTTCTAGGAGGA 57.097 40.909 6.15 0.00 34.60 3.71
1943 2317 4.903045 AATGAAACCGTTCTAGGAGGAA 57.097 40.909 6.15 0.00 34.60 3.36
1944 2318 4.903045 ATGAAACCGTTCTAGGAGGAAA 57.097 40.909 6.15 0.00 34.60 3.13
1945 2319 4.267349 TGAAACCGTTCTAGGAGGAAAG 57.733 45.455 6.15 0.00 34.60 2.62
1946 2320 3.644738 TGAAACCGTTCTAGGAGGAAAGT 59.355 43.478 6.15 0.00 34.60 2.66
1947 2321 4.834496 TGAAACCGTTCTAGGAGGAAAGTA 59.166 41.667 6.15 0.00 34.60 2.24
1948 2322 5.482878 TGAAACCGTTCTAGGAGGAAAGTAT 59.517 40.000 6.15 0.00 34.60 2.12
1949 2323 6.013984 TGAAACCGTTCTAGGAGGAAAGTATT 60.014 38.462 6.15 0.00 34.60 1.89
1950 2324 5.595257 ACCGTTCTAGGAGGAAAGTATTC 57.405 43.478 6.15 0.00 34.73 1.75
1951 2325 5.021458 ACCGTTCTAGGAGGAAAGTATTCA 58.979 41.667 6.15 0.00 34.63 2.57
1952 2326 5.661759 ACCGTTCTAGGAGGAAAGTATTCAT 59.338 40.000 6.15 0.00 34.63 2.57
1953 2327 5.986135 CCGTTCTAGGAGGAAAGTATTCATG 59.014 44.000 0.00 0.00 37.29 3.07
1954 2328 6.183360 CCGTTCTAGGAGGAAAGTATTCATGA 60.183 42.308 0.00 0.00 37.29 3.07
1955 2329 7.437748 CGTTCTAGGAGGAAAGTATTCATGAT 58.562 38.462 0.00 0.00 37.29 2.45
1956 2330 7.928706 CGTTCTAGGAGGAAAGTATTCATGATT 59.071 37.037 0.00 0.00 37.29 2.57
1957 2331 9.267084 GTTCTAGGAGGAAAGTATTCATGATTC 57.733 37.037 0.00 0.00 37.29 2.52
1958 2332 8.789767 TCTAGGAGGAAAGTATTCATGATTCT 57.210 34.615 0.00 0.00 37.29 2.40
1959 2333 9.218525 TCTAGGAGGAAAGTATTCATGATTCTT 57.781 33.333 0.00 0.00 37.29 2.52
2004 2403 1.340211 CCACTGTCCTACTCCGTCTCT 60.340 57.143 0.00 0.00 0.00 3.10
2030 2432 1.804601 AGCGAGAAAGTTTAACCCCG 58.195 50.000 0.00 0.00 0.00 5.73
2127 2588 0.872388 GTGTTAGTCGCAACCAAGGG 59.128 55.000 0.00 0.00 0.00 3.95
2132 2593 0.037590 AGTCGCAACCAAGGGCATTA 59.962 50.000 0.00 0.00 0.00 1.90
2216 2679 4.794278 AACAGTGATGGTATGTCGTACA 57.206 40.909 0.00 0.00 34.87 2.90
2303 2788 6.423302 GCATCACTTGACTGGACATCTTATAG 59.577 42.308 0.00 0.00 0.00 1.31
2366 2851 9.892130 AACAAACTCTAAATATTACTCCCTCAG 57.108 33.333 0.00 0.00 0.00 3.35
2367 2852 9.047947 ACAAACTCTAAATATTACTCCCTCAGT 57.952 33.333 0.00 0.00 39.41 3.41
2368 2853 9.535878 CAAACTCTAAATATTACTCCCTCAGTC 57.464 37.037 0.00 0.00 36.43 3.51
2369 2854 9.495382 AAACTCTAAATATTACTCCCTCAGTCT 57.505 33.333 0.00 0.00 36.43 3.24
2370 2855 8.700439 ACTCTAAATATTACTCCCTCAGTCTC 57.300 38.462 0.00 0.00 36.43 3.36
2371 2856 8.507761 ACTCTAAATATTACTCCCTCAGTCTCT 58.492 37.037 0.00 0.00 36.43 3.10
2382 2867 8.700439 ACTCCCTCAGTCTCTAAATATAAGTC 57.300 38.462 0.00 0.00 0.00 3.01
2383 2868 8.507761 ACTCCCTCAGTCTCTAAATATAAGTCT 58.492 37.037 0.00 0.00 0.00 3.24
2384 2869 9.362151 CTCCCTCAGTCTCTAAATATAAGTCTT 57.638 37.037 0.00 0.00 0.00 3.01
2385 2870 9.716556 TCCCTCAGTCTCTAAATATAAGTCTTT 57.283 33.333 0.00 0.00 0.00 2.52
2459 2944 9.778741 TTTAGACTGTAGATTCACTCATTTTGT 57.221 29.630 0.00 0.00 0.00 2.83
2460 2945 9.778741 TTAGACTGTAGATTCACTCATTTTGTT 57.221 29.630 0.00 0.00 0.00 2.83
2461 2946 8.316640 AGACTGTAGATTCACTCATTTTGTTC 57.683 34.615 0.00 0.00 0.00 3.18
2462 2947 7.389053 AGACTGTAGATTCACTCATTTTGTTCC 59.611 37.037 0.00 0.00 0.00 3.62
2463 2948 6.147821 ACTGTAGATTCACTCATTTTGTTCCG 59.852 38.462 0.00 0.00 0.00 4.30
2464 2949 5.995282 TGTAGATTCACTCATTTTGTTCCGT 59.005 36.000 0.00 0.00 0.00 4.69
2465 2950 7.156000 TGTAGATTCACTCATTTTGTTCCGTA 58.844 34.615 0.00 0.00 0.00 4.02
2466 2951 7.822334 TGTAGATTCACTCATTTTGTTCCGTAT 59.178 33.333 0.00 0.00 0.00 3.06
2467 2952 7.076842 AGATTCACTCATTTTGTTCCGTATG 57.923 36.000 0.00 0.00 0.00 2.39
2468 2953 6.655003 AGATTCACTCATTTTGTTCCGTATGT 59.345 34.615 0.00 0.00 0.00 2.29
2469 2954 7.822334 AGATTCACTCATTTTGTTCCGTATGTA 59.178 33.333 0.00 0.00 0.00 2.29
2470 2955 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
2471 2956 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
2472 2957 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
2473 2958 6.367695 CACTCATTTTGTTCCGTATGTAGTCA 59.632 38.462 0.00 0.00 0.00 3.41
2474 2959 7.064609 CACTCATTTTGTTCCGTATGTAGTCAT 59.935 37.037 0.00 0.00 38.00 3.06
2475 2960 7.606456 ACTCATTTTGTTCCGTATGTAGTCATT 59.394 33.333 0.00 0.00 35.70 2.57
2476 2961 8.330466 TCATTTTGTTCCGTATGTAGTCATTT 57.670 30.769 0.00 0.00 35.70 2.32
2477 2962 8.233868 TCATTTTGTTCCGTATGTAGTCATTTG 58.766 33.333 0.00 0.00 35.70 2.32
2478 2963 7.499321 TTTTGTTCCGTATGTAGTCATTTGT 57.501 32.000 0.00 0.00 35.70 2.83
2479 2964 7.499321 TTTGTTCCGTATGTAGTCATTTGTT 57.501 32.000 0.00 0.00 35.70 2.83
2480 2965 6.474819 TGTTCCGTATGTAGTCATTTGTTG 57.525 37.500 0.00 0.00 35.70 3.33
2481 2966 6.224584 TGTTCCGTATGTAGTCATTTGTTGA 58.775 36.000 0.00 0.00 35.70 3.18
2482 2967 6.706716 TGTTCCGTATGTAGTCATTTGTTGAA 59.293 34.615 0.00 0.00 35.70 2.69
2483 2968 7.226918 TGTTCCGTATGTAGTCATTTGTTGAAA 59.773 33.333 0.00 0.00 35.70 2.69
2484 2969 7.915293 TCCGTATGTAGTCATTTGTTGAAAT 57.085 32.000 0.00 0.00 35.70 2.17
2485 2970 7.970384 TCCGTATGTAGTCATTTGTTGAAATC 58.030 34.615 0.00 0.00 35.70 2.17
2486 2971 7.822334 TCCGTATGTAGTCATTTGTTGAAATCT 59.178 33.333 0.00 0.00 35.70 2.40
2487 2972 8.450964 CCGTATGTAGTCATTTGTTGAAATCTT 58.549 33.333 0.00 0.00 35.70 2.40
2488 2973 9.825972 CGTATGTAGTCATTTGTTGAAATCTTT 57.174 29.630 0.00 0.00 35.70 2.52
2516 3001 9.453830 AAGAGACTTATATTTAGGAATGGAGGT 57.546 33.333 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 240 1.705186 ACCATCCTAGCAAAGTGTGGT 59.295 47.619 0.00 0.00 41.93 4.16
311 313 6.017852 GTCCCTTAGGAAGATAAATTTGAGCG 60.018 42.308 0.00 0.00 46.38 5.03
434 436 5.596845 ACCAAACAAAATTAGCGTGTCATT 58.403 33.333 0.00 0.00 0.00 2.57
585 653 4.610945 CAACAGTCCAAGAAATCACCAAC 58.389 43.478 0.00 0.00 0.00 3.77
602 670 9.428097 TCATATGCTCTATAATAAGTGCAACAG 57.572 33.333 0.00 0.00 45.83 3.16
687 763 7.435192 CCTTCAAAATGTCACCTCAAACTTTAC 59.565 37.037 0.00 0.00 0.00 2.01
874 951 4.096833 TCAATGGCAGAAATGAATCCGAAG 59.903 41.667 0.00 0.00 0.00 3.79
970 1051 4.268644 ACGCAAATGAGATTGATAGTCACG 59.731 41.667 0.00 0.00 31.84 4.35
991 1072 5.063944 CACCTGGAAGATACATGAAGAAACG 59.936 44.000 0.00 0.00 34.07 3.60
1058 1139 6.032956 TCACAATAGCCTTAAAGAAGTCGA 57.967 37.500 0.00 0.00 0.00 4.20
1320 1401 3.733972 CCGCCCCCACCACCATAA 61.734 66.667 0.00 0.00 0.00 1.90
1599 1680 2.164624 GACATGCTAGACTCTTCACGGT 59.835 50.000 0.00 0.00 0.00 4.83
1659 1747 2.456989 CATGGCAAAGCGATGATGAAC 58.543 47.619 8.06 0.00 45.27 3.18
1792 1884 4.023279 TCAACATACAGCAAACAATTCGCT 60.023 37.500 0.00 0.00 36.10 4.93
1848 1940 8.578151 CAGGACTATCAGATAACCTAGGTAAAC 58.422 40.741 16.67 9.31 0.00 2.01
1880 1972 3.304726 GCCTACTCTTGTTTTCAGTTGGC 60.305 47.826 7.79 7.79 42.05 4.52
1916 2008 4.454504 TCCTAGAACGGTTTCATTTTCAGC 59.545 41.667 0.00 0.00 33.72 4.26
1947 2321 9.212641 CACAGAACCGATATAAGAATCATGAAT 57.787 33.333 0.00 0.00 0.00 2.57
1948 2322 8.421002 TCACAGAACCGATATAAGAATCATGAA 58.579 33.333 0.00 0.00 0.00 2.57
1949 2323 7.951591 TCACAGAACCGATATAAGAATCATGA 58.048 34.615 0.00 0.00 0.00 3.07
1950 2324 7.148672 GCTCACAGAACCGATATAAGAATCATG 60.149 40.741 0.00 0.00 0.00 3.07
1951 2325 6.870965 GCTCACAGAACCGATATAAGAATCAT 59.129 38.462 0.00 0.00 0.00 2.45
1952 2326 6.183360 TGCTCACAGAACCGATATAAGAATCA 60.183 38.462 0.00 0.00 0.00 2.57
1953 2327 6.216569 TGCTCACAGAACCGATATAAGAATC 58.783 40.000 0.00 0.00 0.00 2.52
1954 2328 6.161855 TGCTCACAGAACCGATATAAGAAT 57.838 37.500 0.00 0.00 0.00 2.40
1955 2329 5.592104 TGCTCACAGAACCGATATAAGAA 57.408 39.130 0.00 0.00 0.00 2.52
1956 2330 5.592054 CTTGCTCACAGAACCGATATAAGA 58.408 41.667 0.00 0.00 0.00 2.10
1957 2331 4.210120 GCTTGCTCACAGAACCGATATAAG 59.790 45.833 0.00 0.00 0.00 1.73
1958 2332 4.119862 GCTTGCTCACAGAACCGATATAA 58.880 43.478 0.00 0.00 0.00 0.98
1959 2333 3.132111 TGCTTGCTCACAGAACCGATATA 59.868 43.478 0.00 0.00 0.00 0.86
1960 2334 2.093500 TGCTTGCTCACAGAACCGATAT 60.093 45.455 0.00 0.00 0.00 1.63
1961 2335 1.275010 TGCTTGCTCACAGAACCGATA 59.725 47.619 0.00 0.00 0.00 2.92
1962 2336 0.035317 TGCTTGCTCACAGAACCGAT 59.965 50.000 0.00 0.00 0.00 4.18
1963 2337 0.179059 TTGCTTGCTCACAGAACCGA 60.179 50.000 0.00 0.00 0.00 4.69
1964 2338 0.662619 TTTGCTTGCTCACAGAACCG 59.337 50.000 0.00 0.00 0.00 4.44
2004 2403 6.459985 GGGGTTAAACTTTCTCGCTTGTAAAA 60.460 38.462 0.00 0.00 0.00 1.52
2030 2432 8.611654 TGGTCTAAGTCCAAACTTATTGTTAC 57.388 34.615 0.00 0.00 44.82 2.50
2050 2452 1.001641 GCCATGTGCTCCTTGGTCT 60.002 57.895 9.50 0.00 39.89 3.85
2127 2588 6.494842 TGACAAAGGCGATTATTCTTAATGC 58.505 36.000 0.00 0.00 0.00 3.56
2132 2593 9.561069 AGTATATTGACAAAGGCGATTATTCTT 57.439 29.630 0.00 0.00 0.00 2.52
2358 2843 8.934023 AGACTTATATTTAGAGACTGAGGGAG 57.066 38.462 0.00 0.00 0.00 4.30
2359 2844 9.716556 AAAGACTTATATTTAGAGACTGAGGGA 57.283 33.333 0.00 0.00 0.00 4.20
2433 2918 9.778741 ACAAAATGAGTGAATCTACAGTCTAAA 57.221 29.630 0.00 0.00 39.91 1.85
2434 2919 9.778741 AACAAAATGAGTGAATCTACAGTCTAA 57.221 29.630 0.00 0.00 39.91 2.10
2435 2920 9.424319 GAACAAAATGAGTGAATCTACAGTCTA 57.576 33.333 0.00 0.00 39.91 2.59
2436 2921 7.389053 GGAACAAAATGAGTGAATCTACAGTCT 59.611 37.037 0.00 0.00 39.91 3.24
2437 2922 7.522374 GGAACAAAATGAGTGAATCTACAGTC 58.478 38.462 0.00 0.00 39.73 3.51
2438 2923 6.147821 CGGAACAAAATGAGTGAATCTACAGT 59.852 38.462 0.00 0.00 0.00 3.55
2439 2924 6.147821 ACGGAACAAAATGAGTGAATCTACAG 59.852 38.462 0.00 0.00 0.00 2.74
2440 2925 5.995282 ACGGAACAAAATGAGTGAATCTACA 59.005 36.000 0.00 0.00 0.00 2.74
2441 2926 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
2442 2927 7.822334 ACATACGGAACAAAATGAGTGAATCTA 59.178 33.333 0.00 0.00 0.00 1.98
2443 2928 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
2444 2929 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
2445 2930 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
2446 2931 6.932400 ACTACATACGGAACAAAATGAGTGAA 59.068 34.615 0.00 0.00 0.00 3.18
2447 2932 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
2448 2933 6.367695 TGACTACATACGGAACAAAATGAGTG 59.632 38.462 0.00 0.00 0.00 3.51
2449 2934 6.460781 TGACTACATACGGAACAAAATGAGT 58.539 36.000 0.00 0.00 0.00 3.41
2450 2935 6.961359 TGACTACATACGGAACAAAATGAG 57.039 37.500 0.00 0.00 0.00 2.90
2451 2936 7.915293 AATGACTACATACGGAACAAAATGA 57.085 32.000 0.00 0.00 35.50 2.57
2452 2937 8.020819 ACAAATGACTACATACGGAACAAAATG 58.979 33.333 0.00 0.00 35.50 2.32
2453 2938 8.106247 ACAAATGACTACATACGGAACAAAAT 57.894 30.769 0.00 0.00 35.50 1.82
2454 2939 7.499321 ACAAATGACTACATACGGAACAAAA 57.501 32.000 0.00 0.00 35.50 2.44
2455 2940 7.226918 TCAACAAATGACTACATACGGAACAAA 59.773 33.333 0.00 0.00 35.50 2.83
2456 2941 6.706716 TCAACAAATGACTACATACGGAACAA 59.293 34.615 0.00 0.00 35.50 2.83
2457 2942 6.224584 TCAACAAATGACTACATACGGAACA 58.775 36.000 0.00 0.00 35.50 3.18
2458 2943 6.715344 TCAACAAATGACTACATACGGAAC 57.285 37.500 0.00 0.00 35.50 3.62
2459 2944 7.731882 TTTCAACAAATGACTACATACGGAA 57.268 32.000 0.00 0.00 37.92 4.30
2460 2945 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
2461 2946 7.974675 AGATTTCAACAAATGACTACATACGG 58.025 34.615 0.00 0.00 37.92 4.02
2462 2947 9.825972 AAAGATTTCAACAAATGACTACATACG 57.174 29.630 0.00 0.00 37.92 3.06
2490 2975 9.453830 ACCTCCATTCCTAAATATAAGTCTCTT 57.546 33.333 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.