>input_sequence_77626
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----------------------------------------ATGTATCTTCCAGGTGTTGTGAAAGGCAAACGGACAATCT
GGAGACTAAGCATAATCCTCGACTTCTTTAAGGCTATTGTGAACTTCATCAGAATGTTCTTCCTCACAATGTTTTCTGTA
AGTGATCAGAATTAAACTGCTCGAATTATCTTATTGTTGCCAAATTAGCCTTTTGTCCCATATATTTCCATGAGTTAAAA
CACAATATAATTCTCGCATCTTATCTTGTAGATCGAGAAAACAGACAGCTATAAGAAAGGATATGGTAGTGGTAAGAAGT
GGGATGGTGGACCTGGTGGGGGAGGTCCTGGTGGGGGTCCTTATGGTGGTGGGGGCGGCGGTGGAGGTGGACCTCGCGGT
CCTCGCACACTATCTGACCTCCGATCAAACGATCAGAGTAAGTCATATCTTCTAAAATTCCAGATTTTGTTGTTTGTTCA
GAATGGTGGATTTGAGATTTCTAAGCCAAACTCTCTAATTTCAGGTTCCCTCCCTGCTTGTGGATCCTGCTGCGGATGA-
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>chr4D_1_TraesCS4D01G215700
TATTCCTTACTGAATCATCGTAAGTAAGTGTCTCTGTATTTGGTGTGTGCACATAGTAGTCCAATTTGTAGTGGAACCTT
GGCCACTTAGTGCCATTCTGTGGGTCACTGAAGAAAATAAGTGACGTTAGAAATTAGTTTGAGTGAAACACGTAGCTGCC
CACAGTTCAATGGACCAAAGGAGGTAAACAATTGCTAGTTTCTTTTGCGTACTGTTTGTGAGTTATACTAGTA-TATCAA
CCACACTTTGCTAGGATGGTGATTCATTGTGGTAATACCACTAACAGCGGCATTTCTAGATTATTTATGTGTCGCTCAAA
TTTATCTTCCTAAGGGACACTGTCTCATGAAATAATTCTGACAAATTATGAGCTTCAACCCTGTGAGCTGAAAGGTCCAT
GATCAAAGCATCTGTTAGGCATGTAAGACCTAAGTAATGACACGCTAATTTTGTTTGGTCTAATGGT-ATAATGTTACTA
CTTAC-------------------------------------------------------------TAATTGAC----CT
TTATTAAGATTTTGCATTATAATCAATTTTAGAGTAAAAGAAGACTGGTTCATTTGGTGTAACTTCAGATTTTAAGTGGA
GCATACTCACTTGTTGGTGATTTCTTGGACTGTTGCACTTATTATAGAGCATATGAATTGGTG--------CTAGCAGTT
TCATTTGTCAGTTCCTGGAGACATGTCTTGTTTAAGAACAGAGTAAAGTTTGAGGTGACATTTTGAAGGCAGCTGGCCAC
GTTTGATCACTCCTTGGCTTTTTGCTGAAGCCAAAATATAGTTTGGAGCATTCACAGTGTTGTATTTGAAA-TTGATTGA
TCATTTTTTAGCATGCACAAAGTTACATAATTCACCCTTGAGTACATATAATTGCACTGTTGTTGAATTTCTTCGGATTC
ATTTCTGCCATTGATTGTTTTCTATAATTACACGACTTCTTTTGATCTTAGGTCC----GTATGTGAGTAGGCTTTCATT
TAAGTAGGACCGTGACTATCAATCTCATTTGCGTTTCTTCATGTATCTTCCAGGTGTTGTGAAAGGCAAACGGACAATCT
GGAGACTAAGCATAATCCTCGACTTCTTTAAGGCTATTGTGAACTTCATCAGAATGTTCTTCCTCACAATGTTTTCTGTA
AGTGATCAGAATTAAACTGCTCGAATTATCTTATTGTTGCCAAATTAGCCTTTTGTCCCATATATTTCCATGAGTTAAAA
CACAATATAATTCTCGCATCTTATCTTGTAGATCGAGAAAACAGACAGCTATAAGAAAGGATATGGTAGTGGTAAGAAGT
GGGATGGTGGACCTGGTGGGGGAGGTCCTGGTGGGGGTCCTTATGGTGGTGGGGGCGGCGGTGGAGGTGGACCTCGCGGT
CCTCGCACACTATCTGACCTCCGATCAAACGATCAGAGTAAGTCATATCTTCTAAAATTCCAGATTTTGTTGTTTGTTCA
GAATGGTGGATTTGAGATTTCTAAGCCAAACTCTCTAATTTCAGGTTCCCTCCCTGCTTGTGGATCCTGCTGCGGATGAC
ATCTTAACAAAAGAACAACATATTATAATGACAGAAAAACTTCCGTATTTCAATTTCAGCAGAGCAAAATCATTGTGACA
CCGTGAAGAGTCTAGCATGTCCAGTATATATTCTGTAGCTTGTTTCTGATGTGAT-------CTGTGTTCATCATCGCTT
TGCCATGCTGAATTATCCTGGATGGAGTCAAAATCTTATCCTTAATACTGGTTTCCTGTTGTGCAATGTGAATTTACTAT
----ACCTTTTGTCTACTTTGTAATTCCGTGGAGATTGGAATCAGCGAATTGTTTGCTGTATGTTGAATTCAGCCAGGAA
ATAGTTGGAACAACGTGAAGTTTACCTAGGTTATCTGATAGTCCTGTAAACGCCAACTGAAAACAAGAGTAGGCGCTCTT
GTGAAAAG------------------------------------------------------------------------
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--------------------------------------------------CTGAAAATGAAACCGTTCTAGGAGGAAAGT
ATTCATGATTCTTATATCGGTTCT-------------------------GTGAGCAAGCAAACCACTGTCCTACTCCGTC
TCTTTTACAAGCGAGA---AAGTTTAACCCCGTAACAATAAGTTTGGACTTAGACCAAGGAGCACATGGCAAAGAAACTA
-----------------------------------------------------------TAGAATTTGCCGTGTAAATTA
ATATCCTTGTGTTAGTCGCAACCAAGGGCATTAAGAAT--AATCGCCTTTGTCAATATACTTTGAATGAATGCTAAAATT
AGATGTATACCTTTGTAAACAGTGATGGTATGTCGTACAA-CTGAAATGGTTCAATTTGAACAGCTCATGCTCAAACATT
TAAC---------------------GTCTATTGTGTTGATGAGCATCACTTGACTGGACATCTTATAGGGGGGCAAAGCA
TTGTTTTGGTGCGGACCAAACCTAAACAAACTCTAAATATTACTCCCTCAGTCTCTAAATATAAGTCTTTTTAGACATTT
TAAATAGACTACAATATACGAATGTATGTAGATATATTTTAGACTGTAGATTCACTCATTTTGTTCCGTATGTAGTCATT
TGTTGAAATCTTTAAAGAGACTTATATTTAGGAATGGAGGTAG
>chr4B_1
TATTCCTTACTGAATCATCGTAAGTAAGTGTCTCTGTATTTGGTGTGTGCACATAGTAGTCCAATTTGTAGTGGAACCTC
GGCCACTTAGTGCCATTCTGTGGGTCTCTGAAGAAAATAAGTGACGTTAGAAATTAGTTTGAGTGAAACACGTAGCTGCC
CACAGTTCAATGGACCAAAGGAGGTAAACAATTGCTAGTTTCTTTTGCGTACTGTTTGTGAGTTATACTAGTATTATCAC
CCACACTTTGCTAGGATGGTGATTCATTGTGGTAATACCACTAACAGCGGCATTTCTAGATTATTTATGTGTAGCTCAAA
TTTATCTTCCTAAGGGACACTGTTTCATGAAATAATTCTGACAAATTATGAGCTTCAACCCTGCGAGCTGAAAGGTCCAT
GATCAAAGCATCTGTTAGGCATGTAAGACCTAAGTGATGACACGCTAATTTTGTTTGGTCTAATGGTAATAATGTTACTA
CTTAC-------------------------------------------------------------TAATTGACTTGGCT
TTATTAAGATTTTGCATTATAATCAATTTTAGAGTAAAAGAAGACTGGTTCATTTGGTGTAACTTCAGATTTTAAGTGGA
GCATACTCACTTCTTGGTGATTTCTTGGATTGTTGCACTTATTATAGAGCATATGAATTGGTGGCTTGGTGCTAGCAGTT
TCATTTGTCAGTTCCTGGAGACATGTCTTGTTTAAGAACAGAATAAAGTTTGAGGTGACATTTTGAAGGCAGCTGGCCAC
GTTTGATCACTCCTTGGCTTTTTGCTGAAGCCAAAATATAGTTTGGAGCATTCACAGTGTTGTATTTGAAA-TTGATTGA
TCATTTTTTAGCATGCACAAAGTTACATAATTCACCCTTGAGTACATATAATTGCACTGTTGTTGAATTTGTTCGGATTC
ATTTCTGCCATATTG---------------CACGACTTCTTTTGATCTTAGGTCC----GTATGTGAGTAGGCTTTCATT
TAAGTATGACTGTGACTATCAATCTCATTTGTGTTTCTTCATGTATCTTCTAGGTGTTGTGAAAGGCAAACGGACAATCT
GGAGACTAAGCATAATCCCCGACTTCTTTAAGGCTATTGTGAACTTCATCAGAATGTTCTTCCTCACAATGTTTTCTGTA
AGTGATCAGAATTAAACTGCTTGAATTATCTTATTGTTGCCAAATTAGCCTTTTGTCCCATATATTTCCATGAGTTAAAA
CACAATATAATTCTCGCATCTTATCTTGTAGATCGAGAAAACAGACAGCTATAAGAAAGGATATGGTAGTGGTAAGAAGT
GGGATGGTGGACCTGGTGGGGGAGGTCCTGGTGGGGGTCCATATGGTGGTGGGGGCGGCGGTGGAGGTGGCCCTCGCGGT
CCTCGCACACTATCTGACCTCCGATCAAACGATCAGAGTAAGACCTATCTTCTAAAATTCCAGATTTTGTTGTTTGTTCA
GAATGGTGGATTTGAGATTTCTAAGCCAAATTCTCTAATTTCAGGTTCCCTCCCTGCTTGTGGATCCTGCTGCGGATGAC
ATCTTAACAAAAGAACAACATATTATAATGACAGAAAAACTTCCGTATTTC-ATTTCAGCAGAGCAAAATCATTGTGATG
CCGTGAAGAGTCTAGCATGTCCAGTATATATTCTGTAGCTTGTTTCTGATGTGATTTGCATACTGTATTCATCATCGCTT
TGCCATGCTGAATTGTCCTGGATGGAGTCAAAATCTTATCCTTAATACTGGCTTCCTGTTGTGCAATGTGAATTTACTAT
GTATACCGTTTGTCTACTTTGTAATTCCGTGGAGATTGGAATTGGCGAATTGTTTGCTGTATGTTGAATTCAGCCAGGAA
ATAGTTGGAACAACGTGAAATTTACCTAGGTTATCTGGTAGTCCTGTAACCTCCAACTGAAAACAAGAGCAGGCGCTCTT
GTGAAAAACTGAGGCCTCCTTTGATTTACAGGGTTCGCATAGGAATTTTACAGGATTGACACCCTCTGAAATTTTCCCTT
TACATGTTGTTTGATTCGTAGGATTGCATTCCTCAGGAACCAATCTTATAGGAACTTCTTAGTTCATTTTCACGGGAAAA
CAAGCATGAGGTTGGACTTCTTGGAAAAAATCCTCTATTTTCCTACCCAATGTAGGATTTCAGTGGACAGTACATCCTAT
TCTTGTACGTTTCCTACCTATTCCTGCGCAACCTTGTGAATCAAGGAGCCCTGAAAATGAAACCGTTCTAGGA-------
------------------GGTTCT-------------------------GTGAGCAAGCAAACCACTGTCCTACTCCGTC
TCATTTACAAGTGAGA---AAGTTTAACCCCATAACAATAAGTTTGGACTTCGACAAAGGAGCACATGGCAAAGAAACTA
-----------------------------------------------------------TAGAATTTGCCGTGTAAATTA
ATATCCTTGTGTTAGCCGCAACCAAGGCCATTCAGAAT--AATCGCCT-TGTCAATAAACTTTGAATGAATGCTAAAATT
AGATGTATATCTTTGTAAACAGTGATGGTATGTCGTATTACTTG-AATGGTTCAATTTGAACAGCTCATGCTCAAATATT
TAAC---------------------GTCTATTGTGTTGATGAGCATCACTTCACTGGACATCTTATA-GGGGGCAAAGCA
TTGTTTTGCTGCGGACCAAACCTAAACAAACTCTAAATATTA--------------------------------------
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>chr4A_1
TATTCCTTACTGAATCATCGTAAGTAAGTGTCTCTGTATTTGGTGTGTGCACATAGTAGTCCAATTTGTAGTGGAACCTC
GGCCACTTAGTGTCATTCTGTGGGTCACTGAAGAAAATAAGTGACGTTAGAAATTAGTTTGAGTGAAACAGGTAGCTGCC
CACAGTTCAATGGACCAAAG----TAAACAATTGCTAGTTTTCTTTGCGTACTGTTTGTGAGTTATACTAGTATTATCAC
CCACACTTTGCTAGGATGGTGATTCATTGTGTTAATACCACTAACAGCGGCATTTCTAGATTATTTAGGTGTTGCTCAAA
TTTGTCTTCCTAAGGGACACTGTTTCATGAAGTAATTCTGGCAAATTATGAGCTTCAACCCTGTGAGCTGAAAGGTCCGT
GATCAAAGCATCTGTTAGGCATGTAAGACCTAAGTGATGACATGCTAATTGTGTTTGGTCCCTCCGTAAAGAAATATAAG
AGCGTTTAGATTACTAAAGTAGTGATCTAAACGCTCTTATATTTCTTTACAGGGGGAATATAATGTTAATTGACTTGGCT
TTATTAAGATTTTGCATTATAATCAATTTTAGAGTAAAAGAAGACTGGTTCATTTGGTGTAACTTAAGATTTTAAGTGGA
GCATACTCACTTCCGGGTGATTTCTTGGGTTATATTGCAC-TTATAGAGCGTATGAATTGGTG--------CTAGCAGTT
TCATTCGTCAGTTCCTGGAGGCATGTCTTGTTTAAGAAC------AAGTTTGAGGTGACATTTTGGAGGCACCTGGCCAC
GTTTGATCACTCCTTGGCTTTTTCCTGAAGCCAAAATGTAGTTTGGAGCATTCACAGTGTTGTATTTGAAAATTGATTGA
TCACTTTTTAGCATGCACAAAGTTGCGAAATTCACCCTTGAGTACATGTAATTGCATTGTTGTTGAATTTGTTCGGATTC
ATTTCTGGCATTGATTGTTTTCTATAATTATGCGACTTCTTTTGATCTTAAGTCCGTATGTATGTGAGTAGGCTTTCATT
TAAGTAGGACTGTGACCATCAATCTCATTTGTGT-------------TTCCAGGTGTTGTGAAAGGCAAACGGACAATCT
GGAGACTAAGCATAATCCCTGACTTCTTTAAGGCTATTGTGAACTTCATCAGAATGTTCTTCCTCACAATGTTTTCTGTA
AGTGATCAGAATTAAACTGCTCGAATTATCTTATTGTTGCCAAATTAGCCTTTTGTCCCATATATTTCCATGAGTTAAAA
CACAATATAATTCTCGCGTCTTATCTTGTAGATCGAGAAAACAGACAGCTATAAGAAAGGATATGGTAGTGGTAAGAAGT
GGGATGGTGGACCTGGTGGGGGAGGTCCTGGTGGGGGTCCATATGGTGGTGGGGGCGGCGGCGGAGGTGGCCCTCGCGGT
CCTCGCACACTATCTGACCTCCGATCAAACGATCAGAGTAAGTCCTATCTTCTGAAATTCCAGATTTTGTTGTTTGTTCA
GAATGGTGGATTTGAGATTTCTGAGCCAAATTCTCTAATTTCAGGTTCCCTCCCTGCTTGTGGATCCTGCTGCGGATGAC
ATCCTAATAACAAAAGAACAATGATTAATGACAGAAGAACTACCGTATTTCAATTTCAGCAGAGCAAAATCATTGCGACG
CTGTGAAGAGTCTAGCATGTCGAGTATATA-----TAGCTTGTTTCTGATGTGATTTGCACACTGTATTCATCATCGCTT
TGCCATACTGAATTGTCCTGGATGGAGTCAAAATCTTATCCTTA-TACTGGTTTCCTGTTGTGCAATGTGAATTTACTAT
----ACCTTCTGTCTACTTTGTAATTCTGTTGAGATTGGACTTGACGAATTGTTTGCTATTTGTCGAATTCAGCGAGGAA
ATAGTTGGAACAACGTGAAATTTACCATGGTTATCTGATAGTCCTGTAAACTCCAACTGAAAACAAGAGTA---------
--GAAAAA------------------------------------------------------------------------
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--------------------------------------------------CTGAAAATGAAACTGTTCTAGGA-------
------------------GGAAAGTGTTCATGATTCTTATATCGGTTGGGTCAGCAAGCAAACCGCTGTCCTACTCCTTA
TCATTTACTTACATACCAGAAGTTTAACCCCATAACGATAAGTTTGGACTTCGACCAAGGAGCACGTAGCAAAGAAACTA
AAATTTACTATGTAAATTAATATCCTGGACTTCGACCAAGGAGCACGTAGCAAAGAAACTAAAATTTACTATGTAAATTA
ATATCCTTATGTTAATCGTACCTAAGGCAATTTGAAACAAAATCGCCTTTGTCAACAAACTT----TGAATGCTAAAATT
AGATGTA--CCTTTGTAAACAGTGATGGTATGTTGTACTTGCTGAAATGGTTC-ATGTGAACAGCTCATGCTCAAACATT
TTATGTCTATTTTTTTTTGAGCGGGGTCTATTGTGTTGATGAGCATCACTTGGGC-----------------GCAAAGCA
TTGTTTTGGTGCGGACCAAACCTAAACAAACTCTAAATA-----------------------------------------
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>SNPs
-------------------------------------------------------------------------------S
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-------------------------------------------------------------------------------S
------------------------------------------------------------------------S-------
-----------------------S--------------------------------------------------------
-----------------------------------S--------------------------------------------
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------------S----------------S--------------------------------------------------
------------------------------------------S-------------------------------------
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----------------------------------------------------------------------S---------
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----------S--------------------S------------------------------------------------
------------------S-------------------------------------------------------------
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----------------------------------------S-----------------------------S---------
--------------------------------------------S-----------------------------------
------------------------------S-------------------------------------------------
-------------------------------------------------------------------------------S
------------------------------------------------------------------S-------------
--------------S-----------------------------------------------------------------
------------------------------------------SS------------------------------------
-------------------S-------------------------------S----------------------------
-------S------------------------------------------------------------------------
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-------------------------------------------------------------------------SSSSSSS
SSSSSSSSSSSSSSSSSS--------------------------------------------------------------
--S----------------------------S-------------------S----------------------------
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---------------------------S----S------------------------S----------------------
--------------------------------------S-----------------------------------------
-------------------------------------------------------------------S------------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_670
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------TCACTTGTTGGTGATTTCTTGGAC--------------------------------------------------
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>reverse_2336
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---------------ATCGGTTCTGTGAGCAAGCA---------------------------------------------
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